Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0200120 | XP_003594849.1 | 96.815 | 157 | 5 | 0 | 1 | 157 | 1 | 157 | 8.38e-104 | 304 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0200120 | sp|Q06931|ABR17_PEA | 86.624 | 157 | 21 | 0 | 1 | 157 | 1 | 157 | 9.13e-94 | 271 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0200120 | G7INB7 | 96.815 | 157 | 5 | 0 | 1 | 157 | 1 | 157 | 4.00e-104 | 304 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037280 | Msa0200120 | 0.807107 | 5.940545e-50 | -8.615850e-47 |
| Msa0037720 | Msa0200120 | 0.824050 | 9.955658e-54 | -8.615850e-47 |
| Msa0083240 | Msa0200120 | 0.805460 | 1.320638e-49 | -8.615850e-47 |
| Msa0172310 | Msa0200120 | -0.806321 | 8.706653e-50 | -8.615850e-47 |
| Msa0200100 | Msa0200120 | 0.838371 | 2.992120e-57 | -8.615850e-47 |
| Msa0200120 | Msa0242730 | 0.812923 | 3.320783e-51 | -8.615850e-47 |
| Msa0200120 | Msa0242790 | 0.865987 | 3.960962e-65 | -8.615850e-47 |
| Msa0200120 | Msa0281010 | 0.815851 | 7.479626e-52 | -8.615850e-47 |
| Msa0200120 | Msa0281050 | 0.810377 | 1.188107e-50 | -8.615850e-47 |
| Msa0200120 | Msa0320180 | 0.808484 | 3.027174e-50 | -8.615850e-47 |
| Msa0200120 | Msa0320230 | 0.858383 | 8.555652e-63 | -8.615850e-47 |
| Msa0200120 | Msa0480530 | 0.811743 | 6.008410e-51 | -8.615850e-47 |
| Msa0200120 | Msa0480540 | 0.834302 | 3.242361e-56 | -8.615850e-47 |
| Msa0200120 | Msa0480550 | 0.819085 | 1.397857e-52 | -8.615850e-47 |
| Msa0200120 | Msa0744540 | 0.813121 | 3.004483e-51 | -8.615850e-47 |
| Msa0200120 | Msa0744550 | 0.833949 | 3.974641e-56 | -8.615850e-47 |
| Msa0200120 | Msa0744560 | 0.822020 | 2.960722e-53 | -8.615850e-47 |
| Msa0200120 | Msa0826360 | 0.802330 | 5.906131e-49 | -8.615850e-47 |
| Msa0200120 | Msa0826370 | 0.829627 | 4.631499e-55 | -8.615850e-47 |
| Msa0200120 | Msa0826380 | 0.814130 | 1.802069e-51 | -8.615850e-47 |
| Msa0200120 | Msa0826450 | 0.811281 | 7.571736e-51 | -8.615850e-47 |
| Msa0200120 | Msa0865810 | 0.833305 | 5.755078e-56 | -8.615850e-47 |
| Msa0200120 | Msa0865820 | 0.815773 | 7.784910e-52 | -8.615850e-47 |
| Msa0200120 | Msa0865830 | 0.801068 | 1.072148e-48 | -8.615850e-47 |
| Msa0200120 | Msa0876790 | 0.800156 | 1.645108e-48 | -8.615850e-47 |
| Msa0200120 | Msa1202470 | 0.815652 | 8.283946e-52 | -8.615850e-47 |
| Msa0200120 | Msa1254910 | 0.801348 | 9.392700e-49 | -8.615850e-47 |
| Msa0200120 | Msa1372470 | -0.804968 | 1.674297e-49 | -8.615850e-47 |
| Msa0200120 | Msa1459920 | 0.828460 | 8.882584e-55 | -8.615850e-47 |
| Msa0200120 | Msa1459930 | 0.812802 | 3.529454e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0200120 | MtrunA17_Chr2g0295141 | 96.815 | 157 | 5 | 0 | 1 | 157 | 1 | 157 | 7.70e-108 | 304 |
| Msa0200120 | MtrunA17_Chr2g0295091 | 94.268 | 157 | 9 | 0 | 1 | 157 | 1 | 157 | 6.64e-105 | 296 |
| Msa0200120 | MtrunA17_Chr2g0295104 | 90.446 | 157 | 15 | 0 | 1 | 157 | 1 | 157 | 5.08e-101 | 286 |
| Msa0200120 | MtrunA17_Chr2g0295124 | 86.624 | 157 | 21 | 0 | 1 | 157 | 1 | 157 | 1.53e-96 | 275 |
| Msa0200120 | MtrunA17_Chr6g0462311 | 64.968 | 157 | 55 | 0 | 1 | 157 | 1 | 157 | 3.17e-70 | 209 |
| Msa0200120 | MtrunA17_Chr4g0067951 | 64.968 | 157 | 55 | 0 | 1 | 157 | 1 | 157 | 1.08e-69 | 207 |
| Msa0200120 | MtrunA17_Chr2g0295021 | 63.694 | 157 | 57 | 0 | 1 | 157 | 1 | 157 | 6.57e-68 | 203 |
| Msa0200120 | MtrunA17_Chr2g0295001 | 63.694 | 157 | 57 | 0 | 1 | 157 | 1 | 157 | 6.57e-68 | 203 |
| Msa0200120 | MtrunA17_Chr2g0295051 | 61.783 | 157 | 60 | 0 | 1 | 157 | 1 | 157 | 6.11e-66 | 198 |
| Msa0200120 | MtrunA17_Chr2g0295064 | 61.783 | 157 | 60 | 0 | 1 | 157 | 68 | 224 | 7.13e-65 | 197 |
| Msa0200120 | MtrunA17_Chr6g0462291 | 63.571 | 140 | 51 | 0 | 1 | 140 | 1 | 140 | 6.23e-60 | 183 |
| Msa0200120 | MtrunA17_Chr2g0295041 | 56.051 | 157 | 69 | 0 | 1 | 157 | 1 | 157 | 1.26e-59 | 182 |
| Msa0200120 | MtrunA17_Chr2g0295081 | 45.860 | 157 | 85 | 0 | 1 | 157 | 1 | 157 | 5.50e-47 | 150 |
| Msa0200120 | MtrunA17_Chr4g0067921 | 42.236 | 161 | 86 | 5 | 1 | 157 | 1 | 158 | 4.33e-32 | 112 |
| Msa0200120 | MtrunA17_Chr2g0295211 | 32.051 | 156 | 105 | 1 | 1 | 155 | 1 | 156 | 5.29e-30 | 107 |
| Msa0200120 | MtrunA17_Chr4g0067841 | 33.121 | 157 | 104 | 1 | 1 | 156 | 1 | 157 | 4.09e-29 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 42 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAATGGATAACTTCTTAA+TGG | 0.186795 | 2_1:-19720724 | None:intergenic |
| CTTCAACAATTTCAACAGTT+TGG | 0.243960 | 2_1:-19720683 | None:intergenic |
| GGATAACTTCTTAATGGTTC+CGG | 0.295277 | 2_1:-19720718 | None:intergenic |
| TTCAACAATTTCAACAGTTT+GGG | 0.345097 | 2_1:-19720682 | None:intergenic |
| TACAGCTTAGTAGGAGGAAC+AGG | 0.356588 | 2_1:+19721273 | Msa0200120:CDS |
| GTTGAAATTGTTGAAGGAAA+TGG | 0.360922 | 2_1:+19720690 | Msa0200120:CDS |
| GAAACTAAGGCCAGAGGAAC+TGG | 0.366866 | 2_1:+19721429 | Msa0200120:CDS |
| TGGGCAGCAGAAATCACCTT+TGG | 0.390043 | 2_1:-19720663 | None:intergenic |
| GATAACTTCTTAATGGTTCC+GGG | 0.390267 | 2_1:-19720717 | None:intergenic |
| AGAGCTTTGTAGAGTTTAGC+TGG | 0.394931 | 2_1:-19720615 | None:intergenic |
| TGCAGTAGATGAGGCAAACT+TGG | 0.396721 | 2_1:+19721242 | Msa0200120:CDS |
| CTTGATAAGTCCAGTTCCTC+TGG | 0.419380 | 2_1:-19721439 | None:intergenic |
| GGATACAACTACAGCTTAGT+AGG | 0.431725 | 2_1:+19721264 | Msa0200120:CDS |
| AGATAGAGCTGCATCACCTT+TGG | 0.442558 | 2_1:-19721391 | None:intergenic |
| CTCTTAATTACCTTCAACAA+TGG | 0.448029 | 2_1:-19720739 | None:intergenic |
| GGGCAGCAGAAATCACCTTT+GGG | 0.452332 | 2_1:-19720662 | None:intergenic |
| AAGAAGTTATCCATTGTTGA+AGG | 0.479062 | 2_1:+19720729 | Msa0200120:CDS |
| AAAATTGTGGCTGGCTCTGA+TGG | 0.498760 | 2_1:+19721333 | Msa0200120:CDS |
| CAAACTGTTGAAATTGTTGA+AGG | 0.498891 | 2_1:+19720684 | Msa0200120:CDS |
| TAATTTGTGTAGCACAAAGT+TGG | 0.501990 | 2_1:-19721217 | None:intergenic |
| CAGAGGAACTGGACTTATCA+AGG | 0.507213 | 2_1:+19721440 | Msa0200120:CDS |
| GGACTTATCAAGGCCATTGA+GGG | 0.514208 | 2_1:+19721450 | Msa0200120:CDS |
| TTTCACTGTAATCTTAGCAA+TGG | 0.523574 | 2_1:-19721361 | None:intergenic |
| CTCTGGCCTTAGTTTCATCA+CGG | 0.532674 | 2_1:-19721422 | None:intergenic |
| TGCAGTCCGTGATGAAACTA+AGG | 0.533307 | 2_1:+19721416 | Msa0200120:CDS |
| TGCCACGACGTAGCCCTCAA+TGG | 0.549026 | 2_1:-19721463 | None:intergenic |
| TGGACTTATCAAGGCCATTG+AGG | 0.572485 | 2_1:+19721449 | Msa0200120:CDS |
| CAAATTAGATGCAGTAGATG+AGG | 0.587202 | 2_1:+19721233 | Msa0200120:CDS |
| ATTGTGGCTGGCTCTGATGG+TGG | 0.588345 | 2_1:+19721336 | Msa0200120:CDS |
| GCAGTAGATGAGGCAAACTT+GGG | 0.598362 | 2_1:+19721243 | Msa0200120:CDS |
| GTTGAAGGAAATGGAGGACC+CGG | 0.599694 | 2_1:+19720699 | Msa0200120:CDS |
| GTAGAGTTTAGCTGGAGCCA+CGG | 0.602676 | 2_1:-19720607 | None:intergenic |
| TGCTGATGAAATCGTCCCAA+AGG | 0.606260 | 2_1:+19720647 | Msa0200120:CDS |
| CTTAGTAGGAGGAACAGGGT+TGG | 0.609437 | 2_1:+19721278 | Msa0200120:CDS |
| GAAATTGTTGAAGGAAATGG+AGG | 0.626795 | 2_1:+19720693 | Msa0200120:CDS |
| TACAACTACAGCTTAGTAGG+AGG | 0.637578 | 2_1:+19721267 | Msa0200120:CDS |
| GGCCATTGAGGGCTACGTCG+TGG | 0.646344 | 2_1:+19721461 | Msa0200120:CDS |
| GAGCTGCATCACCTTTGGTG+TGG | 0.654393 | 2_1:-19721386 | None:intergenic |
| ACAGTGAAATACCACACCAA+AGG | 0.661287 | 2_1:+19721375 | Msa0200120:CDS |
| CGTGATGAAACTAAGGCCAG+AGG | 0.688505 | 2_1:+19721423 | Msa0200120:CDS |
| TGATGAACATGTCTCAACCG+TGG | 0.717160 | 2_1:+19720590 | Msa0200120:CDS |
| ACAGCTTAGTAGGAGGAACA+GGG | 0.723853 | 2_1:+19721274 | Msa0200120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATATAAATAATTATAA+TGG | + | chr2_1:19721174-19721193 | Msa0200120:intron | 0.0% |
| !! | AATTATATAAATAATTATAA+TGG | + | chr2_1:19721174-19721193 | Msa0200120:intron | 0.0% |
| !!! | TTTGTCAATTTTTAAATAAA+AGG | - | chr2_1:19720888-19720907 | None:intergenic | 10.0% |
| !! | AAATAAGTTAAATTCATTAT+GGG | + | chr2_1:19720967-19720986 | Msa0200120:intron | 10.0% |
| !!! | TTTGTCAATTTTTAAATAAA+AGG | - | chr2_1:19720888-19720907 | None:intergenic | 10.0% |
| !! | AAATAAGTTAAATTCATTAT+GGG | + | chr2_1:19720967-19720986 | Msa0200120:intron | 10.0% |
| !! | CAAATAAGTTAAATTCATTA+TGG | + | chr2_1:19720966-19720985 | Msa0200120:intron | 15.0% |
| !! | AATAAGTTAAATTCATTATG+GGG | + | chr2_1:19720968-19720987 | Msa0200120:intron | 15.0% |
| !! | CAAATAAGTTAAATTCATTA+TGG | + | chr2_1:19720966-19720985 | Msa0200120:intron | 15.0% |
| !! | AATAAGTTAAATTCATTATG+GGG | + | chr2_1:19720968-19720987 | Msa0200120:intron | 15.0% |
| !!! | GACTTTAAAAAAAATGATTC+AGG | + | chr2_1:19721070-19721089 | Msa0200120:intron | 20.0% |
| !!! | GACTTTAAAAAAAATGATTC+AGG | + | chr2_1:19721070-19721089 | Msa0200120:intron | 20.0% |
| ! | TTCAACAATTTCAACAGTTT+GGG | - | chr2_1:19720685-19720704 | None:intergenic | 25.0% |
| ! | AACAATGGATAACTTCTTAA+TGG | - | chr2_1:19720727-19720746 | None:intergenic | 25.0% |
| ! | ATTACATCATTCATTTCTCA+TGG | - | chr2_1:19721013-19721032 | None:intergenic | 25.0% |
| ! | TGAATTCGAAACAAAAATTG+TGG | + | chr2_1:19721320-19721339 | Msa0200120:CDS | 25.0% |
| ! | TTCAACAATTTCAACAGTTT+GGG | - | chr2_1:19720685-19720704 | None:intergenic | 25.0% |
| ! | AACAATGGATAACTTCTTAA+TGG | - | chr2_1:19720727-19720746 | None:intergenic | 25.0% |
| ! | ATTACATCATTCATTTCTCA+TGG | - | chr2_1:19721013-19721032 | None:intergenic | 25.0% |
| ! | TGAATTCGAAACAAAAATTG+TGG | + | chr2_1:19721320-19721339 | Msa0200120:CDS | 25.0% |
| CTTCAACAATTTCAACAGTT+TGG | - | chr2_1:19720686-19720705 | None:intergenic | 30.0% | |
| CAAACTGTTGAAATTGTTGA+AGG | + | chr2_1:19720684-19720703 | Msa0200120:CDS | 30.0% | |
| GTTGAAATTGTTGAAGGAAA+TGG | + | chr2_1:19720690-19720709 | Msa0200120:CDS | 30.0% | |
| AAGAAGTTATCCATTGTTGA+AGG | + | chr2_1:19720729-19720748 | Msa0200120:CDS | 30.0% | |
| CTCTTAATTACCTTCAACAA+TGG | - | chr2_1:19720742-19720761 | None:intergenic | 30.0% | |
| TGGGGTATGTCTAATAATTA+TGG | + | chr2_1:19720986-19721005 | Msa0200120:intron | 30.0% | |
| ATAATTATTAGACATACCCC+TGG | - | chr2_1:19720987-19721006 | None:intergenic | 30.0% | |
| ! | AGGGGTATGTCTAATAATTA+TGG | + | chr2_1:19721048-19721067 | Msa0200120:intron | 30.0% |
| TTCAGGTGATTAATGATACT+CGG | + | chr2_1:19721087-19721106 | Msa0200120:intron | 30.0% | |
| TATAATGGTTGTATTGCAGA+TGG | + | chr2_1:19721189-19721208 | Msa0200120:intron | 30.0% | |
| ! | TAATTTGTGTAGCACAAAGT+TGG | - | chr2_1:19721220-19721239 | None:intergenic | 30.0% |
| TTTCACTGTAATCTTAGCAA+TGG | - | chr2_1:19721364-19721383 | None:intergenic | 30.0% | |
| CTTCAACAATTTCAACAGTT+TGG | - | chr2_1:19720686-19720705 | None:intergenic | 30.0% | |
| CAAACTGTTGAAATTGTTGA+AGG | + | chr2_1:19720684-19720703 | Msa0200120:CDS | 30.0% | |
| GTTGAAATTGTTGAAGGAAA+TGG | + | chr2_1:19720690-19720709 | Msa0200120:CDS | 30.0% | |
| AAGAAGTTATCCATTGTTGA+AGG | + | chr2_1:19720729-19720748 | Msa0200120:CDS | 30.0% | |
| CTCTTAATTACCTTCAACAA+TGG | - | chr2_1:19720742-19720761 | None:intergenic | 30.0% | |
| TGGGGTATGTCTAATAATTA+TGG | + | chr2_1:19720986-19721005 | Msa0200120:intron | 30.0% | |
| ATAATTATTAGACATACCCC+TGG | - | chr2_1:19720987-19721006 | None:intergenic | 30.0% | |
| ! | AGGGGTATGTCTAATAATTA+TGG | + | chr2_1:19721048-19721067 | Msa0200120:intron | 30.0% |
| TTCAGGTGATTAATGATACT+CGG | + | chr2_1:19721087-19721106 | Msa0200120:intron | 30.0% | |
| TATAATGGTTGTATTGCAGA+TGG | + | chr2_1:19721189-19721208 | Msa0200120:intron | 30.0% | |
| ! | TAATTTGTGTAGCACAAAGT+TGG | - | chr2_1:19721220-19721239 | None:intergenic | 30.0% |
| TTTCACTGTAATCTTAGCAA+TGG | - | chr2_1:19721364-19721383 | None:intergenic | 30.0% | |
| GAAATTGTTGAAGGAAATGG+AGG | + | chr2_1:19720693-19720712 | Msa0200120:CDS | 35.0% | |
| GATAACTTCTTAATGGTTCC+GGG | - | chr2_1:19720720-19720739 | None:intergenic | 35.0% | |
| GGATAACTTCTTAATGGTTC+CGG | - | chr2_1:19720721-19720740 | None:intergenic | 35.0% | |
| ! | TACACAATTCTTTGTTGTGC+TGG | - | chr2_1:19720861-19720880 | None:intergenic | 35.0% |
| TAATACATAAGCTCGTTCCA+GGG | + | chr2_1:19721029-19721048 | Msa0200120:intron | 35.0% | |
| CAAATTAGATGCAGTAGATG+AGG | + | chr2_1:19721233-19721252 | Msa0200120:CDS | 35.0% | |
| TTCGAAACAAAAATTGTGGC+TGG | + | chr2_1:19721324-19721343 | Msa0200120:CDS | 35.0% | |
| GAAATTGTTGAAGGAAATGG+AGG | + | chr2_1:19720693-19720712 | Msa0200120:CDS | 35.0% | |
| GATAACTTCTTAATGGTTCC+GGG | - | chr2_1:19720720-19720739 | None:intergenic | 35.0% | |
| GGATAACTTCTTAATGGTTC+CGG | - | chr2_1:19720721-19720740 | None:intergenic | 35.0% | |
| ! | TACACAATTCTTTGTTGTGC+TGG | - | chr2_1:19720861-19720880 | None:intergenic | 35.0% |
| TAATACATAAGCTCGTTCCA+GGG | + | chr2_1:19721029-19721048 | Msa0200120:intron | 35.0% | |
| CAAATTAGATGCAGTAGATG+AGG | + | chr2_1:19721233-19721252 | Msa0200120:CDS | 35.0% | |
| TTCGAAACAAAAATTGTGGC+TGG | + | chr2_1:19721324-19721343 | Msa0200120:CDS | 35.0% | |
| ! | AGAGCTTTGTAGAGTTTAGC+TGG | - | chr2_1:19720618-19720637 | None:intergenic | 40.0% |
| GTAATACATAAGCTCGTTCC+AGG | + | chr2_1:19721028-19721047 | Msa0200120:intron | 40.0% | |
| AATACATAAGCTCGTTCCAG+GGG | + | chr2_1:19721030-19721049 | Msa0200120:intron | 40.0% | |
| GGATACAACTACAGCTTAGT+AGG | + | chr2_1:19721264-19721283 | Msa0200120:CDS | 40.0% | |
| TACAACTACAGCTTAGTAGG+AGG | + | chr2_1:19721267-19721286 | Msa0200120:CDS | 40.0% | |
| ACAGTGAAATACCACACCAA+AGG | + | chr2_1:19721375-19721394 | Msa0200120:CDS | 40.0% | |
| ! | AGAGCTTTGTAGAGTTTAGC+TGG | - | chr2_1:19720618-19720637 | None:intergenic | 40.0% |
| GTAATACATAAGCTCGTTCC+AGG | + | chr2_1:19721028-19721047 | Msa0200120:intron | 40.0% | |
| AATACATAAGCTCGTTCCAG+GGG | + | chr2_1:19721030-19721049 | Msa0200120:intron | 40.0% | |
| GGATACAACTACAGCTTAGT+AGG | + | chr2_1:19721264-19721283 | Msa0200120:CDS | 40.0% | |
| TACAACTACAGCTTAGTAGG+AGG | + | chr2_1:19721267-19721286 | Msa0200120:CDS | 40.0% | |
| ACAGTGAAATACCACACCAA+AGG | + | chr2_1:19721375-19721394 | Msa0200120:CDS | 40.0% | |
| TGATGAACATGTCTCAACCG+TGG | + | chr2_1:19720590-19720609 | Msa0200120:CDS | 45.0% | |
| TGCTGATGAAATCGTCCCAA+AGG | + | chr2_1:19720647-19720666 | Msa0200120:CDS | 45.0% | |
| GGCGAACTTTGATCAGTTGT+CGG | - | chr2_1:19720840-19720859 | None:intergenic | 45.0% | |
| TGCAGTAGATGAGGCAAACT+TGG | + | chr2_1:19721242-19721261 | Msa0200120:CDS | 45.0% | |
| GCAGTAGATGAGGCAAACTT+GGG | + | chr2_1:19721243-19721262 | Msa0200120:CDS | 45.0% | |
| TACAGCTTAGTAGGAGGAAC+AGG | + | chr2_1:19721273-19721292 | Msa0200120:CDS | 45.0% | |
| ACAGCTTAGTAGGAGGAACA+GGG | + | chr2_1:19721274-19721293 | Msa0200120:CDS | 45.0% | |
| !! | AAAATTGTGGCTGGCTCTGA+TGG | + | chr2_1:19721333-19721352 | Msa0200120:CDS | 45.0% |
| AGATAGAGCTGCATCACCTT+TGG | - | chr2_1:19721394-19721413 | None:intergenic | 45.0% | |
| TGCAGTCCGTGATGAAACTA+AGG | + | chr2_1:19721416-19721435 | Msa0200120:CDS | 45.0% | |
| !! | CTCTGGCCTTAGTTTCATCA+CGG | - | chr2_1:19721425-19721444 | None:intergenic | 45.0% |
| CTTGATAAGTCCAGTTCCTC+TGG | - | chr2_1:19721442-19721461 | None:intergenic | 45.0% | |
| CAGAGGAACTGGACTTATCA+AGG | + | chr2_1:19721440-19721459 | Msa0200120:CDS | 45.0% | |
| TGGACTTATCAAGGCCATTG+AGG | + | chr2_1:19721449-19721468 | Msa0200120:CDS | 45.0% | |
| GGACTTATCAAGGCCATTGA+GGG | + | chr2_1:19721450-19721469 | Msa0200120:CDS | 45.0% | |
| TGATGAACATGTCTCAACCG+TGG | + | chr2_1:19720590-19720609 | Msa0200120:CDS | 45.0% | |
| TGCTGATGAAATCGTCCCAA+AGG | + | chr2_1:19720647-19720666 | Msa0200120:CDS | 45.0% | |
| GGCGAACTTTGATCAGTTGT+CGG | - | chr2_1:19720840-19720859 | None:intergenic | 45.0% | |
| TGCAGTAGATGAGGCAAACT+TGG | + | chr2_1:19721242-19721261 | Msa0200120:CDS | 45.0% | |
| GCAGTAGATGAGGCAAACTT+GGG | + | chr2_1:19721243-19721262 | Msa0200120:CDS | 45.0% | |
| TACAGCTTAGTAGGAGGAAC+AGG | + | chr2_1:19721273-19721292 | Msa0200120:CDS | 45.0% | |
| ACAGCTTAGTAGGAGGAACA+GGG | + | chr2_1:19721274-19721293 | Msa0200120:CDS | 45.0% | |
| !! | AAAATTGTGGCTGGCTCTGA+TGG | + | chr2_1:19721333-19721352 | Msa0200120:CDS | 45.0% |
| AGATAGAGCTGCATCACCTT+TGG | - | chr2_1:19721394-19721413 | None:intergenic | 45.0% | |
| TGCAGTCCGTGATGAAACTA+AGG | + | chr2_1:19721416-19721435 | Msa0200120:CDS | 45.0% | |
| !! | CTCTGGCCTTAGTTTCATCA+CGG | - | chr2_1:19721425-19721444 | None:intergenic | 45.0% |
| CTTGATAAGTCCAGTTCCTC+TGG | - | chr2_1:19721442-19721461 | None:intergenic | 45.0% | |
| CAGAGGAACTGGACTTATCA+AGG | + | chr2_1:19721440-19721459 | Msa0200120:CDS | 45.0% | |
| TGGACTTATCAAGGCCATTG+AGG | + | chr2_1:19721449-19721468 | Msa0200120:CDS | 45.0% | |
| GGACTTATCAAGGCCATTGA+GGG | + | chr2_1:19721450-19721469 | Msa0200120:CDS | 45.0% | |
| GTAGAGTTTAGCTGGAGCCA+CGG | - | chr2_1:19720610-19720629 | None:intergenic | 50.0% | |
| GGGCAGCAGAAATCACCTTT+GGG | - | chr2_1:19720665-19720684 | None:intergenic | 50.0% | |
| TGGGCAGCAGAAATCACCTT+TGG | - | chr2_1:19720666-19720685 | None:intergenic | 50.0% | |
| GTTGAAGGAAATGGAGGACC+CGG | + | chr2_1:19720699-19720718 | Msa0200120:CDS | 50.0% | |
| CTTAGTAGGAGGAACAGGGT+TGG | + | chr2_1:19721278-19721297 | Msa0200120:CDS | 50.0% | |
| CGTGATGAAACTAAGGCCAG+AGG | + | chr2_1:19721423-19721442 | Msa0200120:CDS | 50.0% | |
| GAAACTAAGGCCAGAGGAAC+TGG | + | chr2_1:19721429-19721448 | Msa0200120:CDS | 50.0% | |
| GTAGAGTTTAGCTGGAGCCA+CGG | - | chr2_1:19720610-19720629 | None:intergenic | 50.0% | |
| GGGCAGCAGAAATCACCTTT+GGG | - | chr2_1:19720665-19720684 | None:intergenic | 50.0% | |
| TGGGCAGCAGAAATCACCTT+TGG | - | chr2_1:19720666-19720685 | None:intergenic | 50.0% | |
| GTTGAAGGAAATGGAGGACC+CGG | + | chr2_1:19720699-19720718 | Msa0200120:CDS | 50.0% | |
| CTTAGTAGGAGGAACAGGGT+TGG | + | chr2_1:19721278-19721297 | Msa0200120:CDS | 50.0% | |
| CGTGATGAAACTAAGGCCAG+AGG | + | chr2_1:19721423-19721442 | Msa0200120:CDS | 50.0% | |
| GAAACTAAGGCCAGAGGAAC+TGG | + | chr2_1:19721429-19721448 | Msa0200120:CDS | 50.0% | |
| !! | ATTGTGGCTGGCTCTGATGG+TGG | + | chr2_1:19721336-19721355 | Msa0200120:CDS | 55.0% |
| GAGCTGCATCACCTTTGGTG+TGG | - | chr2_1:19721389-19721408 | None:intergenic | 55.0% | |
| !! | ATTGTGGCTGGCTCTGATGG+TGG | + | chr2_1:19721336-19721355 | Msa0200120:CDS | 55.0% |
| GAGCTGCATCACCTTTGGTG+TGG | - | chr2_1:19721389-19721408 | None:intergenic | 55.0% | |
| TGCCACGACGTAGCCCTCAA+TGG | - | chr2_1:19721466-19721485 | None:intergenic | 60.0% | |
| TGCCACGACGTAGCCCTCAA+TGG | - | chr2_1:19721466-19721485 | None:intergenic | 60.0% | |
| GGCCATTGAGGGCTACGTCG+TGG | + | chr2_1:19721461-19721480 | Msa0200120:CDS | 65.0% | |
| GGCCATTGAGGGCTACGTCG+TGG | + | chr2_1:19721461-19721480 | Msa0200120:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 19720570 | 19721500 | 19720570 | ID=Msa0200120;Name=Msa0200120 |
| chr2_1 | mRNA | 19720570 | 19721500 | 19720570 | ID=Msa0200120-mRNA-1;Parent=Msa0200120;Name=Msa0200120-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|0|0|1|1|1|2|0|157 |
| chr2_1 | exon | 19720570 | 19720750 | 19720570 | ID=Msa0200120-mRNA-1:exon:8209;Parent=Msa0200120-mRNA-1 |
| chr2_1 | exon | 19721208 | 19721500 | 19721208 | ID=Msa0200120-mRNA-1:exon:8210;Parent=Msa0200120-mRNA-1 |
| chr2_1 | CDS | 19720570 | 19720750 | 19720570 | ID=Msa0200120-mRNA-1:cds;Parent=Msa0200120-mRNA-1 |
| chr2_1 | CDS | 19721208 | 19721500 | 19721208 | ID=Msa0200120-mRNA-1:cds;Parent=Msa0200120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
