Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646670 | Q9FVL0.1 | 100.000 | 160 | 0 | 0 | 1 | 160 | 1 | 160 | 1.73e-112 | 326 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646670 | sp|Q9FVL0|HBL1_MEDSA | 100.000 | 160 | 0 | 0 | 1 | 160 | 1 | 160 | 2.16e-115 | 326 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646670 | I3SPW2 | 99.375 | 160 | 1 | 0 | 1 | 160 | 1 | 160 | 5.82e-112 | 324 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012810 | Msa0646670 | 0.808971 | 2.382249e-50 | -8.615850e-47 |
| Msa0022090 | Msa0646670 | -0.806879 | 6.639055e-50 | -8.615850e-47 |
| Msa0025690 | Msa0646670 | -0.801666 | 8.083331e-49 | -8.615850e-47 |
| Msa0044320 | Msa0646670 | -0.800991 | 1.111315e-48 | -8.615850e-47 |
| Msa0059880 | Msa0646670 | 0.829251 | 5.715084e-55 | -8.615850e-47 |
| Msa0063850 | Msa0646670 | -0.805075 | 1.590399e-49 | -8.615850e-47 |
| Msa0064990 | Msa0646670 | 0.805641 | 1.210087e-49 | -8.615850e-47 |
| Msa0106110 | Msa0646670 | 0.804401 | 2.199132e-49 | -8.615850e-47 |
| Msa0605020 | Msa0646670 | 0.987764 | 1.894377e-171 | -8.615850e-47 |
| Msa0622070 | Msa0646670 | 0.807402 | 5.144444e-50 | -8.615850e-47 |
| Msa0625310 | Msa0646670 | -0.819701 | 1.011321e-52 | -8.615850e-47 |
| Msa0630130 | Msa0646670 | 0.805253 | 1.459567e-49 | -8.615850e-47 |
| Msa0632040 | Msa0646670 | -0.804251 | 2.362675e-49 | -8.615850e-47 |
| Msa0639880 | Msa0646670 | -0.814841 | 1.254425e-51 | -8.615850e-47 |
| Msa0646670 | Msa0668160 | -0.814134 | 1.798514e-51 | -8.615850e-47 |
| Msa0646670 | Msa0691150 | -0.808992 | 2.357631e-50 | -8.615850e-47 |
| Msa0646670 | Msa0695630 | 0.801445 | 8.973250e-49 | -8.615850e-47 |
| Msa0646670 | Msa0705710 | -0.801071 | 1.070497e-48 | -8.615850e-47 |
| Msa0646670 | Msa0709820 | 0.852541 | 4.313737e-61 | -8.615850e-47 |
| Msa0646670 | Msa0712100 | -0.805494 | 1.299467e-49 | -8.615850e-47 |
| Msa0646670 | Msa0747500 | 0.825656 | 4.161867e-54 | -8.615850e-47 |
| Msa0646670 | Msa0749900 | -0.823458 | 1.370370e-53 | -8.615850e-47 |
| Msa0646670 | Msa0753410 | 0.806893 | 6.594336e-50 | -8.615850e-47 |
| Msa0646670 | Msa0770890 | -0.802903 | 4.497318e-49 | -8.615850e-47 |
| Msa0646670 | Msa0774560 | -0.819691 | 1.016827e-52 | -8.615850e-47 |
| Msa0646670 | Msa0797010 | -0.811938 | 5.448929e-51 | -8.615850e-47 |
| Msa0646670 | Msa0807130 | -0.803888 | 2.811242e-49 | -8.615850e-47 |
| Msa0646670 | Msa0807170 | -0.815329 | 9.775633e-52 | -8.615850e-47 |
| Msa0646670 | Msa0830120 | -0.817927 | 2.558160e-52 | -8.615850e-47 |
| Msa0646670 | Msa0830450 | -0.816557 | 5.201126e-52 | -8.615850e-47 |
| Msa0646670 | Msa0840630 | -0.822337 | 2.500002e-53 | -8.615850e-47 |
| Msa0646670 | Msa0849130 | -0.813259 | 2.802035e-51 | -8.615850e-47 |
| Msa0646670 | Msa0896990 | 0.826461 | 2.678452e-54 | -8.615850e-47 |
| Msa0646670 | Msa0902340 | 0.804071 | 2.575584e-49 | -8.615850e-47 |
| Msa0646670 | Msa0910830 | 0.801506 | 8.720837e-49 | -8.615850e-47 |
| Msa0646670 | Msa0933580 | 0.810836 | 9.452961e-51 | -8.615850e-47 |
| Msa0646670 | Msa0996940 | 0.821619 | 3.666113e-53 | -8.615850e-47 |
| Msa0646670 | Msa1007160 | 0.819350 | 1.216239e-52 | -8.615850e-47 |
| Msa0646670 | Msa1009150 | -0.802998 | 4.300193e-49 | -8.615850e-47 |
| Msa0646670 | Msa1009170 | -0.820184 | 7.842403e-53 | -8.615850e-47 |
| Msa0646670 | Msa1035790 | -0.811856 | 5.677759e-51 | -8.615850e-47 |
| Msa0646670 | Msa1039650 | 0.840748 | 7.214315e-58 | -8.615850e-47 |
| Msa0646670 | Msa1049810 | 0.815341 | 9.714015e-52 | -8.615850e-47 |
| Msa0646670 | Msa1049850 | 0.807494 | 4.917260e-50 | -8.615850e-47 |
| Msa0646670 | Msa1079870 | 0.801510 | 8.703864e-49 | -8.615850e-47 |
| Msa0646670 | Msa1098350 | -0.821909 | 3.141894e-53 | -8.615850e-47 |
| Msa0646670 | Msa1109880 | 0.801363 | 9.329381e-49 | -8.615850e-47 |
| Msa0646670 | Msa1109890 | 0.823900 | 1.079481e-53 | -8.615850e-47 |
| Msa0646670 | Msa1112040 | 0.824040 | 1.001025e-53 | -8.615850e-47 |
| Msa0646670 | Msa1113280 | -0.809307 | 2.018660e-50 | -8.615850e-47 |
| Msa0646670 | Msa1117280 | -0.819055 | 1.419935e-52 | -8.615850e-47 |
| Msa0646670 | Msa1138110 | 0.803661 | 3.134375e-49 | -8.615850e-47 |
| Msa0646670 | Msa1138480 | -0.818032 | 2.421417e-52 | -8.615850e-47 |
| Msa0646670 | Msa1138490 | -0.806575 | 7.694965e-50 | -8.615850e-47 |
| Msa0646670 | Msa1152860 | 0.810834 | 9.464119e-51 | -8.615850e-47 |
| Msa0646670 | Msa1182400 | -0.815217 | 1.035070e-51 | -8.615850e-47 |
| Msa0646670 | Msa1199750 | -0.808581 | 2.886790e-50 | -8.615850e-47 |
| Msa0646670 | Msa1208250 | -0.831360 | 1.744371e-55 | -8.615850e-47 |
| Msa0646670 | Msa1214960 | 0.812028 | 5.209178e-51 | -8.615850e-47 |
| Msa0646670 | Msa1230190 | -0.813288 | 2.761121e-51 | -8.615850e-47 |
| Msa0646670 | Msa1239870 | 0.804762 | 1.848506e-49 | -8.615850e-47 |
| Msa0646670 | Msa1247720 | -0.806728 | 7.145570e-50 | -8.615850e-47 |
| Msa0646670 | Msa1258200 | -0.813428 | 2.572705e-51 | -8.615850e-47 |
| Msa0646670 | Msa1286950 | -0.805669 | 1.193867e-49 | -8.615850e-47 |
| Msa0646670 | Msa1319230 | -0.815853 | 7.472495e-52 | -8.615850e-47 |
| Msa0646670 | Msa1328600 | -0.817780 | 2.761829e-52 | -8.615850e-47 |
| Msa0646670 | Msa1357380 | -0.830093 | 3.565359e-55 | -8.615850e-47 |
| Msa0646670 | Msa1366700 | -0.808878 | 2.494397e-50 | -8.615850e-47 |
| Msa0646670 | Msa1369220 | -0.804208 | 2.412508e-49 | -8.615850e-47 |
| Msa0646670 | Msa1373560 | 0.808812 | 2.577020e-50 | -8.615850e-47 |
| Msa0646670 | Msa1395700 | -0.804644 | 1.956389e-49 | -8.615850e-47 |
| Msa0646670 | Msa1398110 | 0.803806 | 2.923927e-49 | -8.615850e-47 |
| Msa0646670 | Msa1412830 | -0.810015 | 1.422018e-50 | -8.615850e-47 |
| Msa0646670 | Msa1426690 | -0.810202 | 1.295749e-50 | -8.615850e-47 |
| Msa0646670 | Msa1432250 | -0.816767 | 4.666554e-52 | -8.615850e-47 |
| Msa0646670 | Msa1433060 | -0.805006 | 1.644063e-49 | -8.615850e-47 |
| Msa0646670 | Msa1433380 | -0.805358 | 1.387416e-49 | -8.615850e-47 |
| Msa0646670 | Msa1437650 | -0.830562 | 2.738195e-55 | -8.615850e-47 |
| Msa0646670 | Msa1450850 | -0.806599 | 7.606055e-50 | -8.615850e-47 |
| Msa0150910 | Msa0646670 | 0.814703 | 1.346028e-51 | -8.615850e-47 |
| Msa0192890 | Msa0646670 | 0.850307 | 1.848121e-60 | -8.615850e-47 |
| Msa0206600 | Msa0646670 | -0.802115 | 6.538070e-49 | -8.615850e-47 |
| Msa0235020 | Msa0646670 | 0.850871 | 1.282829e-60 | -8.615850e-47 |
| Msa0375500 | Msa0646670 | 0.872857 | 2.304056e-67 | -8.615850e-47 |
| Msa0384220 | Msa0646670 | 0.800828 | 1.200252e-48 | -8.615850e-47 |
| Msa0398690 | Msa0646670 | 0.807496 | 4.913317e-50 | -8.615850e-47 |
| Msa0404120 | Msa0646670 | 0.804141 | 2.490765e-49 | -8.615850e-47 |
| Msa0410960 | Msa0646670 | -0.816719 | 4.783562e-52 | -8.615850e-47 |
| Msa0424300 | Msa0646670 | 0.859189 | 4.911571e-63 | -8.615850e-47 |
| Msa0434890 | Msa0646670 | 0.842075 | 3.227132e-58 | -8.615850e-47 |
| Msa0438440 | Msa0646670 | -0.813621 | 2.332607e-51 | -8.615850e-47 |
| Msa0452010 | Msa0646670 | -0.806330 | 8.669141e-50 | -8.615850e-47 |
| Msa0471210 | Msa0646670 | 0.870452 | 1.443942e-66 | -8.615850e-47 |
| Msa0242390 | Msa0646670 | 0.810297 | 1.236560e-50 | -8.615850e-47 |
| Msa0242730 | Msa0646670 | 0.815311 | 9.867642e-52 | -8.615850e-47 |
| Msa0251140 | Msa0646670 | -0.819523 | 1.110973e-52 | -8.615850e-47 |
| Msa0258280 | Msa0646670 | -0.820396 | 7.012533e-53 | -8.615850e-47 |
| Msa0266380 | Msa0646670 | -0.824668 | 7.125265e-54 | -8.615850e-47 |
| Msa0273420 | Msa0646670 | 0.850178 | 2.008264e-60 | -8.615850e-47 |
| Msa0275570 | Msa0646670 | 0.804696 | 1.908058e-49 | -8.615850e-47 |
| Msa0281010 | Msa0646670 | 0.816489 | 5.385414e-52 | -8.615850e-47 |
| Msa0313680 | Msa0646670 | 0.849104 | 4.005096e-60 | -8.615850e-47 |
| Msa0315010 | Msa0646670 | -0.831951 | 1.247229e-55 | -8.615850e-47 |
| Msa0320180 | Msa0646670 | 0.821704 | 3.505504e-53 | -8.615850e-47 |
| Msa0341860 | Msa0646670 | -0.819821 | 9.495544e-53 | -8.615850e-47 |
| Msa0503620 | Msa0646670 | -0.809417 | 1.911494e-50 | -8.615850e-47 |
| Msa0512430 | Msa0646670 | -0.813001 | 3.191642e-51 | -8.615850e-47 |
| Msa0515930 | Msa0646670 | 0.856552 | 2.977961e-62 | -8.615850e-47 |
| Msa0540160 | Msa0646670 | -0.805248 | 1.463324e-49 | -8.615850e-47 |
| Msa0543310 | Msa0646670 | -0.800843 | 1.191730e-48 | -8.615850e-47 |
| Msa0565530 | Msa0646670 | -0.840438 | 8.693258e-58 | -8.615850e-47 |
| Msa0599250 | Msa0646670 | -0.811046 | 8.513366e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646670 | MtrunA17_Chr4g0034301 | 99.375 | 160 | 1 | 0 | 1 | 160 | 1 | 160 | 1.12e-115 | 324 |
| Msa0646670 | MtrunA17_Chr2g0305551 | 81.333 | 150 | 28 | 0 | 8 | 157 | 13 | 162 | 2.59e-87 | 253 |
| Msa0646670 | MtrunA17_Chr2g0305541 | 81.879 | 149 | 27 | 0 | 9 | 157 | 9 | 157 | 5.26e-87 | 252 |
| Msa0646670 | MtrunA17_Chr4g0034311 | 83.221 | 149 | 25 | 0 | 9 | 157 | 185 | 333 | 2.15e-85 | 254 |
| Msa0646670 | MtrunA17_Chr4g0034311 | 79.487 | 156 | 29 | 1 | 2 | 157 | 10 | 162 | 9.10e-84 | 250 |
| Msa0646670 | MtrunA17_Chr1g0197501 | 48.000 | 150 | 77 | 1 | 8 | 156 | 22 | 171 | 2.49e-38 | 128 |
| Msa0646670 | MtrunA17_Chr5g0417631 | 47.651 | 149 | 74 | 2 | 8 | 156 | 2 | 146 | 6.74e-37 | 124 |
| Msa0646670 | MtrunA17_Chr5g0435991 | 45.638 | 149 | 77 | 2 | 8 | 156 | 2 | 146 | 1.57e-36 | 123 |
| Msa0646670 | MtrunA17_Chr5g0435621 | 45.638 | 149 | 77 | 2 | 8 | 156 | 2 | 146 | 3.37e-36 | 122 |
| Msa0646670 | MtrunA17_Chr1g0148751 | 47.651 | 149 | 73 | 3 | 8 | 156 | 2 | 145 | 2.53e-35 | 120 |
| Msa0646670 | MtrunA17_Chr5g0435981 | 46.309 | 149 | 75 | 3 | 8 | 156 | 2 | 145 | 3.15e-34 | 117 |
| Msa0646670 | MtrunA17_Chr5g0427351 | 45.270 | 148 | 77 | 2 | 9 | 156 | 3 | 146 | 6.57e-34 | 116 |
| Msa0646670 | MtrunA17_Chr5g0435611 | 44.000 | 150 | 80 | 2 | 8 | 157 | 2 | 147 | 3.41e-33 | 115 |
| Msa0646670 | MtrunA17_Chr1g0197531 | 44.295 | 149 | 80 | 1 | 8 | 156 | 2 | 147 | 5.68e-33 | 114 |
| Msa0646670 | MtrunA17_Chr1g0170851 | 41.892 | 148 | 83 | 1 | 9 | 156 | 3 | 147 | 8.18e-31 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646670 | AT2G16060.1 | 79.605 | 152 | 31 | 0 | 9 | 160 | 9 | 160 | 1.93e-88 | 255 |
| Msa0646670 | AT3G10520.1 | 52.667 | 150 | 71 | 0 | 8 | 157 | 5 | 154 | 6.93e-51 | 160 |
Find 32 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACACTTACCCTTCAGAATA+TGG | 0.210157 | 4_3:+52450724 | Msa0646670:exon |
| CTACTACACCATATTTAAAA+TGG | 0.249717 | 4_3:-52451594 | None:intergenic |
| GGTGACAAAGTTTGCACTAT+TGG | 0.325692 | 4_3:+52451788 | Msa0646670:intron |
| AAAAGATTCAAAAGTTCCTT+TGG | 0.334733 | 4_3:+52451001 | Msa0646670:CDS |
| TTCTCTGACCGTGACTTTAC+CGG | 0.339739 | 4_3:-52451545 | None:intergenic |
| CCTTCAGAATATGGGCACTT+TGG | 0.384904 | 4_3:+52450733 | Msa0646670:exon |
| TATAAACTAGAGAGTTTAAG+AGG | 0.396192 | 4_3:-52451919 | None:intergenic |
| AAGAAGAATTCTGCAGAGTT+AGG | 0.397154 | 4_3:+52450815 | Msa0646670:CDS |
| AACTAGAGAGTTTAAGAGGA+AGG | 0.427518 | 4_3:-52451915 | None:intergenic |
| ATAGCCGGTGACCACATTTC+AGG | 0.433187 | 4_3:-52451831 | None:intergenic |
| TAAGTGTTACGTGCTAATTA+AGG | 0.453125 | 4_3:-52450709 | None:intergenic |
| GCAGTTCAATTGCGGAAATC+CGG | 0.465498 | 4_3:+52451526 | Msa0646670:CDS |
| ATGGGCACTTTGGATACAAA+AGG | 0.471419 | 4_3:+52450743 | Msa0646670:CDS |
| CCCCATGCATTCTTCATAGC+CGG | 0.478259 | 4_3:-52451846 | None:intergenic |
| TAATTAAGGTATGTGATTTG+TGG | 0.489143 | 4_3:-52450695 | None:intergenic |
| TGCCATGTCTGTCTTTCTCA+TGG | 0.508395 | 4_3:+52451049 | Msa0646670:CDS |
| ACACTTACCCTTCAGAATAT+GGG | 0.519885 | 4_3:+52450725 | Msa0646670:exon |
| CACCGGCTATGAAGAATGCA+TGG | 0.521161 | 4_3:+52451844 | Msa0646670:CDS |
| GGGAGAAGCTTATGATCAGC+TGG | 0.524272 | 4_3:+52451866 | Msa0646670:CDS |
| AAGCTCTTGTGGTGAAGTCA+TGG | 0.525782 | 4_3:+52450783 | Msa0646670:CDS |
| CCAAAGTGCCCATATTCTGA+AGG | 0.558548 | 4_3:-52450733 | None:intergenic |
| ACCGGCTATGAAGAATGCAT+GGG | 0.592597 | 4_3:+52451845 | Msa0646670:CDS |
| CAAAGTGCCCATATTCTGAA+GGG | 0.600691 | 4_3:-52450732 | None:intergenic |
| AGTACCTGAAATGTGGTCAC+CGG | 0.611768 | 4_3:+52451827 | Msa0646670:CDS |
| GTGAATCAGCAGTTCAATTG+CGG | 0.612574 | 4_3:+52451518 | Msa0646670:CDS |
| CATGGCATGAGGCTTGAGCT+TGG | 0.612875 | 4_3:-52451033 | None:intergenic |
| TGAAGAACAAGAAGCTCTTG+TGG | 0.616139 | 4_3:+52450772 | Msa0646670:CDS |
| AAGAAGCAGTACCTGAAATG+TGG | 0.626355 | 4_3:+52451820 | Msa0646670:CDS |
| GCGGAAATCCGGTAAAGTCA+CGG | 0.634999 | 4_3:+52451537 | Msa0646670:CDS |
| AGAAAGACAGACATGGCATG+AGG | 0.665594 | 4_3:-52451044 | None:intergenic |
| CCGGCTATGAAGAATGCATG+GGG | 0.704265 | 4_3:+52451846 | Msa0646670:CDS |
| TACCATGAGAAAGACAGACA+TGG | 0.720993 | 4_3:-52451051 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAGTATATTTTTTTTACT+AGG | + | chr4_3:52451647-52451666 | Msa0646670:intron | 10.0% |
| !!! | TAAGTATATTTTTTTTACTA+GGG | + | chr4_3:52451648-52451667 | Msa0646670:intron | 10.0% |
| !!! | TTTAATTTTTTGATTTTGTA+AGG | + | chr4_3:52451767-52451786 | Msa0646670:intron | 10.0% |
| !!! | ATAAGTATATTTTTTTTACT+AGG | + | chr4_3:52451647-52451666 | Msa0646670:intron | 10.0% |
| !!! | TAAGTATATTTTTTTTACTA+GGG | + | chr4_3:52451648-52451667 | Msa0646670:intron | 10.0% |
| !!! | TTTAATTTTTTGATTTTGTA+AGG | + | chr4_3:52451767-52451786 | Msa0646670:intron | 10.0% |
| !! | TTACATTAAAATTTGACATA+AGG | + | chr4_3:52451703-52451722 | Msa0646670:intron | 15.0% |
| !! | TTACATTAAAATTTGACATA+AGG | + | chr4_3:52451703-52451722 | Msa0646670:intron | 15.0% |
| !!! | CTAATTCAGTAACTAAATTT+TGG | + | chr4_3:52451136-52451155 | Msa0646670:intron | 20.0% |
| !! | TATCATTTCTCATATTCAAA+TGG | - | chr4_3:52451274-52451293 | None:intergenic | 20.0% |
| !! | TTAAAATTTGACATAAGGTT+TGG | + | chr4_3:52451708-52451727 | Msa0646670:intron | 20.0% |
| !!! | CTAATTCAGTAACTAAATTT+TGG | + | chr4_3:52451136-52451155 | Msa0646670:intron | 20.0% |
| !! | TATCATTTCTCATATTCAAA+TGG | - | chr4_3:52451274-52451293 | None:intergenic | 20.0% |
| !! | TTAAAATTTGACATAAGGTT+TGG | + | chr4_3:52451708-52451727 | Msa0646670:intron | 20.0% |
| ! | TAATTAAGGTATGTGATTTG+TGG | - | chr4_3:52450698-52450717 | None:intergenic | 25.0% |
| !!! | TTTTTTTGAAGTAAGTAGCT+AGG | + | chr4_3:52450846-52450865 | Msa0646670:intron | 25.0% |
| !!! | TTCAACATTTTTTACTCAAG+AGG | + | chr4_3:52450875-52450894 | Msa0646670:intron | 25.0% |
| ! | AAAAGATTCAAAAGTTCCTT+TGG | + | chr4_3:52451001-52451020 | Msa0646670:CDS | 25.0% |
| ! | TTTAGTTACTGAATTAGAGA+CGG | - | chr4_3:52451133-52451152 | None:intergenic | 25.0% |
| ! | AAAACAATAGAGAGAGAAAA+AGG | - | chr4_3:52451373-52451392 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCTCACTTCTTAT+TGG | - | chr4_3:52451399-52451418 | None:intergenic | 25.0% |
| ! | AATAAGAAGTGAGAAAAACA+AGG | + | chr4_3:52451398-52451417 | Msa0646670:intron | 25.0% |
| ! | GCAATAACAAAATAATTAGC+TGG | - | chr4_3:52451492-52451511 | None:intergenic | 25.0% |
| ! | GAATCAAGCTTGAAAAAATT+AGG | + | chr4_3:52451565-52451584 | Msa0646670:CDS | 25.0% |
| ! | CTACTACACCATATTTAAAA+TGG | - | chr4_3:52451597-52451616 | None:intergenic | 25.0% |
| ! | TAATTAAGGTATGTGATTTG+TGG | - | chr4_3:52450698-52450717 | None:intergenic | 25.0% |
| !!! | TTTTTTTGAAGTAAGTAGCT+AGG | + | chr4_3:52450846-52450865 | Msa0646670:intron | 25.0% |
| !!! | TTCAACATTTTTTACTCAAG+AGG | + | chr4_3:52450875-52450894 | Msa0646670:intron | 25.0% |
| ! | AAAAGATTCAAAAGTTCCTT+TGG | + | chr4_3:52451001-52451020 | Msa0646670:CDS | 25.0% |
| ! | TTTAGTTACTGAATTAGAGA+CGG | - | chr4_3:52451133-52451152 | None:intergenic | 25.0% |
| ! | AAAACAATAGAGAGAGAAAA+AGG | - | chr4_3:52451373-52451392 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCTCACTTCTTAT+TGG | - | chr4_3:52451399-52451418 | None:intergenic | 25.0% |
| ! | AATAAGAAGTGAGAAAAACA+AGG | + | chr4_3:52451398-52451417 | Msa0646670:intron | 25.0% |
| ! | GCAATAACAAAATAATTAGC+TGG | - | chr4_3:52451492-52451511 | None:intergenic | 25.0% |
| ! | GAATCAAGCTTGAAAAAATT+AGG | + | chr4_3:52451565-52451584 | Msa0646670:CDS | 25.0% |
| ! | CTACTACACCATATTTAAAA+TGG | - | chr4_3:52451597-52451616 | None:intergenic | 25.0% |
| TAAGTGTTACGTGCTAATTA+AGG | - | chr4_3:52450712-52450731 | None:intergenic | 30.0% | |
| GTCAAAAAGTTGTCAAAAAG+TGG | - | chr4_3:52451306-52451325 | None:intergenic | 30.0% | |
| TCAACAAAGTTGTCATCAAA+TGG | + | chr4_3:52451424-52451443 | Msa0646670:intron | 30.0% | |
| ! | GGTGCTAACCATTTTAAATA+TGG | + | chr4_3:52451586-52451605 | Msa0646670:CDS | 30.0% |
| TAAGTGTTACGTGCTAATTA+AGG | - | chr4_3:52450712-52450731 | None:intergenic | 30.0% | |
| GTCAAAAAGTTGTCAAAAAG+TGG | - | chr4_3:52451306-52451325 | None:intergenic | 30.0% | |
| TCAACAAAGTTGTCATCAAA+TGG | + | chr4_3:52451424-52451443 | Msa0646670:intron | 30.0% | |
| ! | GGTGCTAACCATTTTAAATA+TGG | + | chr4_3:52451586-52451605 | Msa0646670:CDS | 30.0% |
| AACACTTACCCTTCAGAATA+TGG | + | chr4_3:52450724-52450743 | Msa0646670:exon | 35.0% | |
| ACACTTACCCTTCAGAATAT+GGG | + | chr4_3:52450725-52450744 | Msa0646670:exon | 35.0% | |
| AAGAAGAATTCTGCAGAGTT+AGG | + | chr4_3:52450815-52450834 | Msa0646670:CDS | 35.0% | |
| AAATCCGTCTCTAATGTACT+CGG | - | chr4_3:52451163-52451182 | None:intergenic | 35.0% | |
| TGACAAAGTCAAAGCTTGAA+TGG | - | chr4_3:52451237-52451256 | None:intergenic | 35.0% | |
| TCTCATATTCAAATGGTGAG+TGG | - | chr4_3:52451267-52451286 | None:intergenic | 35.0% | |
| !! | TTCAGGTACTGCTTCTTTTA+TGG | - | chr4_3:52451817-52451836 | None:intergenic | 35.0% |
| AACACTTACCCTTCAGAATA+TGG | + | chr4_3:52450724-52450743 | Msa0646670:exon | 35.0% | |
| ACACTTACCCTTCAGAATAT+GGG | + | chr4_3:52450725-52450744 | Msa0646670:exon | 35.0% | |
| AAGAAGAATTCTGCAGAGTT+AGG | + | chr4_3:52450815-52450834 | Msa0646670:CDS | 35.0% | |
| AAATCCGTCTCTAATGTACT+CGG | - | chr4_3:52451163-52451182 | None:intergenic | 35.0% | |
| TGACAAAGTCAAAGCTTGAA+TGG | - | chr4_3:52451237-52451256 | None:intergenic | 35.0% | |
| TCTCATATTCAAATGGTGAG+TGG | - | chr4_3:52451267-52451286 | None:intergenic | 35.0% | |
| !! | TTCAGGTACTGCTTCTTTTA+TGG | - | chr4_3:52451817-52451836 | None:intergenic | 35.0% |
| ! | CAAAGTGCCCATATTCTGAA+GGG | - | chr4_3:52450735-52450754 | None:intergenic | 40.0% |
| ATGGGCACTTTGGATACAAA+AGG | + | chr4_3:52450743-52450762 | Msa0646670:CDS | 40.0% | |
| TGAAGAACAAGAAGCTCTTG+TGG | + | chr4_3:52450772-52450791 | Msa0646670:CDS | 40.0% | |
| !! | GAGAACAGTTTTTGAGCTGA+TGG | - | chr4_3:52450975-52450994 | None:intergenic | 40.0% |
| TACCATGAGAAAGACAGACA+TGG | - | chr4_3:52451054-52451073 | None:intergenic | 40.0% | |
| AGAGAGAAAAAGGAAGAGAG+AGG | - | chr4_3:52451363-52451382 | None:intergenic | 40.0% | |
| GTGAATCAGCAGTTCAATTG+CGG | + | chr4_3:52451518-52451537 | Msa0646670:CDS | 40.0% | |
| ! | TGTAGTAGACGAGCATTTTG+AGG | + | chr4_3:52451609-52451628 | Msa0646670:CDS | 40.0% |
| GGTGACAAAGTTTGCACTAT+TGG | + | chr4_3:52451788-52451807 | Msa0646670:intron | 40.0% | |
| AAGAAGCAGTACCTGAAATG+TGG | + | chr4_3:52451820-52451839 | Msa0646670:CDS | 40.0% | |
| ! | CAAAGTGCCCATATTCTGAA+GGG | - | chr4_3:52450735-52450754 | None:intergenic | 40.0% |
| ATGGGCACTTTGGATACAAA+AGG | + | chr4_3:52450743-52450762 | Msa0646670:CDS | 40.0% | |
| TGAAGAACAAGAAGCTCTTG+TGG | + | chr4_3:52450772-52450791 | Msa0646670:CDS | 40.0% | |
| !! | GAGAACAGTTTTTGAGCTGA+TGG | - | chr4_3:52450975-52450994 | None:intergenic | 40.0% |
| TACCATGAGAAAGACAGACA+TGG | - | chr4_3:52451054-52451073 | None:intergenic | 40.0% | |
| AGAGAGAAAAAGGAAGAGAG+AGG | - | chr4_3:52451363-52451382 | None:intergenic | 40.0% | |
| GTGAATCAGCAGTTCAATTG+CGG | + | chr4_3:52451518-52451537 | Msa0646670:CDS | 40.0% | |
| ! | TGTAGTAGACGAGCATTTTG+AGG | + | chr4_3:52451609-52451628 | Msa0646670:CDS | 40.0% |
| GGTGACAAAGTTTGCACTAT+TGG | + | chr4_3:52451788-52451807 | Msa0646670:intron | 40.0% | |
| AAGAAGCAGTACCTGAAATG+TGG | + | chr4_3:52451820-52451839 | Msa0646670:CDS | 40.0% | |
| ! | CCAAAGTGCCCATATTCTGA+AGG | - | chr4_3:52450736-52450755 | None:intergenic | 45.0% |
| CCTTCAGAATATGGGCACTT+TGG | + | chr4_3:52450733-52450752 | Msa0646670:exon | 45.0% | |
| AAGCTCTTGTGGTGAAGTCA+TGG | + | chr4_3:52450783-52450802 | Msa0646670:CDS | 45.0% | |
| !!! | AGCTTGGTGTTTTGCTCCAA+AGG | - | chr4_3:52451020-52451039 | None:intergenic | 45.0% |
| AGAAAGACAGACATGGCATG+AGG | - | chr4_3:52451047-52451066 | None:intergenic | 45.0% | |
| TGCCATGTCTGTCTTTCTCA+TGG | + | chr4_3:52451049-52451068 | Msa0646670:CDS | 45.0% | |
| TGGACCGAGTACATTAGAGA+CGG | + | chr4_3:52451156-52451175 | Msa0646670:intron | 45.0% | |
| AGTCAAAGCTTGAATGGTCG+TGG | - | chr4_3:52451231-52451250 | None:intergenic | 45.0% | |
| GCAGTTCAATTGCGGAAATC+CGG | + | chr4_3:52451526-52451545 | Msa0646670:CDS | 45.0% | |
| TTCTCTGACCGTGACTTTAC+CGG | - | chr4_3:52451548-52451567 | None:intergenic | 45.0% | |
| AGTACCTGAAATGTGGTCAC+CGG | + | chr4_3:52451827-52451846 | Msa0646670:CDS | 45.0% | |
| ACCGGCTATGAAGAATGCAT+GGG | + | chr4_3:52451845-52451864 | Msa0646670:CDS | 45.0% | |
| ! | CCAAAGTGCCCATATTCTGA+AGG | - | chr4_3:52450736-52450755 | None:intergenic | 45.0% |
| CCTTCAGAATATGGGCACTT+TGG | + | chr4_3:52450733-52450752 | Msa0646670:exon | 45.0% | |
| AAGCTCTTGTGGTGAAGTCA+TGG | + | chr4_3:52450783-52450802 | Msa0646670:CDS | 45.0% | |
| !!! | AGCTTGGTGTTTTGCTCCAA+AGG | - | chr4_3:52451020-52451039 | None:intergenic | 45.0% |
| AGAAAGACAGACATGGCATG+AGG | - | chr4_3:52451047-52451066 | None:intergenic | 45.0% | |
| TGCCATGTCTGTCTTTCTCA+TGG | + | chr4_3:52451049-52451068 | Msa0646670:CDS | 45.0% | |
| TGGACCGAGTACATTAGAGA+CGG | + | chr4_3:52451156-52451175 | Msa0646670:intron | 45.0% | |
| AGTCAAAGCTTGAATGGTCG+TGG | - | chr4_3:52451231-52451250 | None:intergenic | 45.0% | |
| GCAGTTCAATTGCGGAAATC+CGG | + | chr4_3:52451526-52451545 | Msa0646670:CDS | 45.0% | |
| TTCTCTGACCGTGACTTTAC+CGG | - | chr4_3:52451548-52451567 | None:intergenic | 45.0% | |
| AGTACCTGAAATGTGGTCAC+CGG | + | chr4_3:52451827-52451846 | Msa0646670:CDS | 45.0% | |
| ACCGGCTATGAAGAATGCAT+GGG | + | chr4_3:52451845-52451864 | Msa0646670:CDS | 45.0% | |
| GCGGAAATCCGGTAAAGTCA+CGG | + | chr4_3:52451537-52451556 | Msa0646670:CDS | 50.0% | |
| ATAGCCGGTGACCACATTTC+AGG | - | chr4_3:52451834-52451853 | None:intergenic | 50.0% | |
| ! | CACCGGCTATGAAGAATGCA+TGG | + | chr4_3:52451844-52451863 | Msa0646670:CDS | 50.0% |
| CCCCATGCATTCTTCATAGC+CGG | - | chr4_3:52451849-52451868 | None:intergenic | 50.0% | |
| CCGGCTATGAAGAATGCATG+GGG | + | chr4_3:52451846-52451865 | Msa0646670:CDS | 50.0% | |
| GGGAGAAGCTTATGATCAGC+TGG | + | chr4_3:52451866-52451885 | Msa0646670:CDS | 50.0% | |
| GCGGAAATCCGGTAAAGTCA+CGG | + | chr4_3:52451537-52451556 | Msa0646670:CDS | 50.0% | |
| ATAGCCGGTGACCACATTTC+AGG | - | chr4_3:52451834-52451853 | None:intergenic | 50.0% | |
| ! | CACCGGCTATGAAGAATGCA+TGG | + | chr4_3:52451844-52451863 | Msa0646670:CDS | 50.0% |
| CCCCATGCATTCTTCATAGC+CGG | - | chr4_3:52451849-52451868 | None:intergenic | 50.0% | |
| CCGGCTATGAAGAATGCATG+GGG | + | chr4_3:52451846-52451865 | Msa0646670:CDS | 50.0% | |
| GGGAGAAGCTTATGATCAGC+TGG | + | chr4_3:52451866-52451885 | Msa0646670:CDS | 50.0% | |
| CATGGCATGAGGCTTGAGCT+TGG | - | chr4_3:52451036-52451055 | None:intergenic | 55.0% | |
| CATGGCATGAGGCTTGAGCT+TGG | - | chr4_3:52451036-52451055 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 52450688 | 52451926 | 52450688 | ID=Msa0646670;Name=Msa0646670 |
| chr4_3 | mRNA | 52450688 | 52451926 | 52450688 | ID=Msa0646670-mRNA-1;Parent=Msa0646670;Name=Msa0646670-mRNA-1;_AED=0.12;_eAED=0.12;_QI=55|1|0.75|1|1|1|4|0|160 |
| chr4_3 | exon | 52450688 | 52450855 | 52450688 | ID=Msa0646670-mRNA-1:exon:12862;Parent=Msa0646670-mRNA-1 |
| chr4_3 | exon | 52450956 | 52451070 | 52450956 | ID=Msa0646670-mRNA-1:exon:12863;Parent=Msa0646670-mRNA-1 |
| chr4_3 | exon | 52451514 | 52451630 | 52451514 | ID=Msa0646670-mRNA-1:exon:12864;Parent=Msa0646670-mRNA-1 |
| chr4_3 | exon | 52451789 | 52451926 | 52451789 | ID=Msa0646670-mRNA-1:exon:12865;Parent=Msa0646670-mRNA-1 |
| chr4_3 | five_prime_UTR | 52450688 | 52450742 | 52450688 | ID=Msa0646670-mRNA-1:five_prime_utr;Parent=Msa0646670-mRNA-1 |
| chr4_3 | CDS | 52450743 | 52450855 | 52450743 | ID=Msa0646670-mRNA-1:cds;Parent=Msa0646670-mRNA-1 |
| chr4_3 | CDS | 52450956 | 52451070 | 52450956 | ID=Msa0646670-mRNA-1:cds;Parent=Msa0646670-mRNA-1 |
| chr4_3 | CDS | 52451514 | 52451630 | 52451514 | ID=Msa0646670-mRNA-1:cds;Parent=Msa0646670-mRNA-1 |
| chr4_3 | CDS | 52451789 | 52451926 | 52451789 | ID=Msa0646670-mRNA-1:cds;Parent=Msa0646670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
