AlfalfaGEDB | Msa0646670

M. sativa cultivar zhongmu-4 / Msa0646670

KEGG: K21893|K21894
GO: -
PFAM: PF00042.25

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0646670	Q9FVL0.1	100.000	160	0	0	1	160	1	160	1.73e-112	326

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0646670	sp\|Q9FVL0\|HBL1_MEDSA	100.000	160	0	0	1	160	1	160	2.16e-115	326

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0646670	I3SPW2	99.375	160	1	0	1	160	1	160	5.82e-112	324

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0012810	Msa0646670	0.808971	2.382249e-50	-8.615850e-47
Msa0022090	Msa0646670	-0.806879	6.639055e-50	-8.615850e-47
Msa0025690	Msa0646670	-0.801666	8.083331e-49	-8.615850e-47
Msa0044320	Msa0646670	-0.800991	1.111315e-48	-8.615850e-47
Msa0059880	Msa0646670	0.829251	5.715084e-55	-8.615850e-47
Msa0063850	Msa0646670	-0.805075	1.590399e-49	-8.615850e-47
Msa0064990	Msa0646670	0.805641	1.210087e-49	-8.615850e-47
Msa0106110	Msa0646670	0.804401	2.199132e-49	-8.615850e-47
Msa0150910	Msa0646670	0.814703	1.346028e-51	-8.615850e-47
Msa0192890	Msa0646670	0.850307	1.848121e-60	-8.615850e-47

Showing 1 to 10 of 112 entries

Previous1 2 3 4 5…12Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0646670	MtrunA17_Chr4g0034301	99.375	160	1	0	1	160	1	160	1.12e-115	324
Msa0646670	MtrunA17_Chr2g0305551	81.333	150	28	0	8	157	13	162	2.59e-87	253
Msa0646670	MtrunA17_Chr2g0305541	81.879	149	27	0	9	157	9	157	5.26e-87	252
Msa0646670	MtrunA17_Chr4g0034311	83.221	149	25	0	9	157	185	333	2.15e-85	254
Msa0646670	MtrunA17_Chr4g0034311	79.487	156	29	1	2	157	10	162	9.10e-84	250
Msa0646670	MtrunA17_Chr1g0197501	48.000	150	77	1	8	156	22	171	2.49e-38	128
Msa0646670	MtrunA17_Chr5g0417631	47.651	149	74	2	8	156	2	146	6.74e-37	124
Msa0646670	MtrunA17_Chr5g0435991	45.638	149	77	2	8	156	2	146	1.57e-36	123
Msa0646670	MtrunA17_Chr5g0435621	45.638	149	77	2	8	156	2	146	3.37e-36	122
Msa0646670	MtrunA17_Chr1g0148751	47.651	149	73	3	8	156	2	145	2.53e-35	120

Showing 1 to 10 of 15 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0646670	AT2G16060.1	79.605	152	31	0	9	160	9	160	1.93e-88	255
Msa0646670	AT3G10520.1	52.667	150	71	0	8	157	5	154	6.93e-51	160

Showing 1 to 2 of 2 entries

Previous1Next

Find 32 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATTCAAAAGTTCCTT+TGG	0.334733	4_3:+52451001	Msa0646670:CDS
AACACTTACCCTTCAGAATA+TGG	0.210157	4_3:+52450724	Msa0646670:exon
AACTAGAGAGTTTAAGAGGA+AGG	0.427518	4_3:-52451915	None:intergenic
AAGAAGAATTCTGCAGAGTT+AGG	0.397154	4_3:+52450815	Msa0646670:CDS
AAGAAGCAGTACCTGAAATG+TGG	0.626355	4_3:+52451820	Msa0646670:CDS
AAGCTCTTGTGGTGAAGTCA+TGG	0.525782	4_3:+52450783	Msa0646670:CDS
ACACTTACCCTTCAGAATAT+GGG	0.519885	4_3:+52450725	Msa0646670:exon
ACCGGCTATGAAGAATGCAT+GGG	0.592597	4_3:+52451845	Msa0646670:CDS
AGAAAGACAGACATGGCATG+AGG	0.665594	4_3:-52451044	None:intergenic
AGTACCTGAAATGTGGTCAC+CGG	0.611768	4_3:+52451827	Msa0646670:CDS

Showing 1 to 10 of 32 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TAAGTGTTACGTGCTAATTA+AGG	-	chr4_3:52450712-52450731	None:intergenic	30.0%
GTCAAAAAGTTGTCAAAAAG+TGG	-	chr4_3:52451306-52451325	None:intergenic	30.0%
TCAACAAAGTTGTCATCAAA+TGG	+	chr4_3:52451424-52451443	Msa0646670:intron	30.0%
TAAGTGTTACGTGCTAATTA+AGG	-	chr4_3:52450712-52450731	None:intergenic	30.0%
GTCAAAAAGTTGTCAAAAAG+TGG	-	chr4_3:52451306-52451325	None:intergenic	30.0%
TCAACAAAGTTGTCATCAAA+TGG	+	chr4_3:52451424-52451443	Msa0646670:intron	30.0%
AACACTTACCCTTCAGAATA+TGG	+	chr4_3:52450724-52450743	Msa0646670:exon	35.0%
ACACTTACCCTTCAGAATAT+GGG	+	chr4_3:52450725-52450744	Msa0646670:exon	35.0%
AAGAAGAATTCTGCAGAGTT+AGG	+	chr4_3:52450815-52450834	Msa0646670:CDS	35.0%
AAATCCGTCTCTAATGTACT+CGG	-	chr4_3:52451163-52451182	None:intergenic	35.0%

Showing 1 to 10 of 116 entries

Previous1 2 3 4 5…12Next

Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	52450688	52451926	52450688	ID=Msa0646670;Name=Msa0646670
chr4_3	mRNA	52450688	52451926	52450688	ID=Msa0646670-mRNA-1;Parent=Msa0646670;Name=Msa0646670-mRNA-1;_AED=0.12;_eAED=0.12;_QI=55\|1\|0.75\|1\|1\|1\|4\|0\|160
chr4_3	exon	52450688	52450855	52450688	ID=Msa0646670-mRNA-1:exon:12862;Parent=Msa0646670-mRNA-1
chr4_3	exon	52450956	52451070	52450956	ID=Msa0646670-mRNA-1:exon:12863;Parent=Msa0646670-mRNA-1
chr4_3	exon	52451514	52451630	52451514	ID=Msa0646670-mRNA-1:exon:12864;Parent=Msa0646670-mRNA-1
chr4_3	exon	52451789	52451926	52451789	ID=Msa0646670-mRNA-1:exon:12865;Parent=Msa0646670-mRNA-1
chr4_3	five_prime_UTR	52450688	52450742	52450688	ID=Msa0646670-mRNA-1:five_prime_utr;Parent=Msa0646670-mRNA-1
chr4_3	CDS	52450743	52450855	52450743	ID=Msa0646670-mRNA-1:cds;Parent=Msa0646670-mRNA-1
chr4_3	CDS	52450956	52451070	52450956	ID=Msa0646670-mRNA-1:cds;Parent=Msa0646670-mRNA-1
chr4_3	CDS	52451514	52451630	52451514	ID=Msa0646670-mRNA-1:cds;Parent=Msa0646670-mRNA-1
chr4_3	CDS	52451789	52451926	52451789	ID=Msa0646670-mRNA-1:cds;Parent=Msa0646670-mRNA-1

Gene Sequence

>Msa0646670

ATGGGCACTTTGGATACAAAAGGTTTCACTGAAGAACAAGAAGCTCTTGTGGTGAAGTCATGGAATGCAATGAAGAAGAATTCTGCAGAGTTAGGACTAAAGCTTTTTTTGAAAATATTTGAGATTGCTCCATCAGCTCAAAAACTGTTCTCATTCTTAAAAGATTCAAAAGTTCCTTTGGAGCAAAACACCAAGCTCAAGCCTCATGCCATGTCTGTCTTTCTCATGACATGTGAATCAGCAGTTCAATTGCGGAAATCCGGTAAAGTCACGGTCAGAGAATCAAGCTTGAAAAAATTAGGTGCTAACCATTTTAAATATGGTGTAGTAGACGAGCATTTTGAGGTGACAAAGTTTGCACTATTGGAGACCATAAAAGAAGCAGTACCTGAAATGTGGTCACCGGCTATGAAGAATGCATGGGGAGAAGCTTATGATCAGCTGGTCAATGCTATCAAATCTGAAATGAAACCTTCCTCTTAA

Protein sequence

>Msa0646670

MGTLDTKGFTEEQEALVVKSWNAMKKNSAELGLKLFLKIFEIAPSAQKLFSFLKDSKVPLEQNTKLKPHAMSVFLMTCESAVQLRKSGKVTVRESSLKKLGANHFKYGVVDEHFEVTKFALLETIKEAVPEMWSPAMKNAWGEAYDQLVNAIKSEMKPSS*