Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605020 | Q9FVL0.1 | 100.000 | 160 | 0 | 0 | 1 | 160 | 1 | 160 | 1.73e-112 | 326 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605020 | sp|Q9FVL0|HBL1_MEDSA | 100.000 | 160 | 0 | 0 | 1 | 160 | 1 | 160 | 2.16e-115 | 326 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012810 | Msa0605020 | 0.807299 | 5.409860e-50 | -8.615850e-47 |
| Msa0022090 | Msa0605020 | -0.806361 | 8.539199e-50 | -8.615850e-47 |
| Msa0025060 | Msa0605020 | -0.803583 | 3.252902e-49 | -8.615850e-47 |
| Msa0025690 | Msa0605020 | -0.807921 | 3.990732e-50 | -8.615850e-47 |
| Msa0030400 | Msa0605020 | -0.802259 | 6.108495e-49 | -8.615850e-47 |
| Msa0038910 | Msa0605020 | -0.800686 | 1.282867e-48 | -8.615850e-47 |
| Msa0044320 | Msa0605020 | -0.804937 | 1.699423e-49 | -8.615850e-47 |
| Msa0055650 | Msa0605020 | -0.804432 | 2.166192e-49 | -8.615850e-47 |
| Msa0059880 | Msa0605020 | 0.827181 | 1.802875e-54 | -8.615850e-47 |
| Msa0063850 | Msa0605020 | -0.807296 | 5.418762e-50 | -8.615850e-47 |
| Msa0064990 | Msa0605020 | 0.801888 | 7.279124e-49 | -8.615850e-47 |
| Msa0106110 | Msa0605020 | 0.803811 | 2.916836e-49 | -8.615850e-47 |
| Msa0605020 | Msa0618490 | -0.809621 | 1.728658e-50 | -8.615850e-47 |
| Msa0605020 | Msa0622070 | 0.807637 | 4.585817e-50 | -8.615850e-47 |
| Msa0605020 | Msa0625310 | -0.817444 | 3.287411e-52 | -8.615850e-47 |
| Msa0605020 | Msa0632040 | -0.801199 | 1.007566e-48 | -8.615850e-47 |
| Msa0605020 | Msa0639880 | -0.822183 | 2.714941e-53 | -8.615850e-47 |
| Msa0605020 | Msa0646670 | 0.987764 | 1.894377e-171 | -8.615850e-47 |
| Msa0605020 | Msa0668160 | -0.810519 | 1.107153e-50 | -8.615850e-47 |
| Msa0605020 | Msa0691150 | -0.807089 | 5.991489e-50 | -8.615850e-47 |
| Msa0605020 | Msa0695630 | 0.801508 | 8.710750e-49 | -8.615850e-47 |
| Msa0605020 | Msa0709820 | 0.850099 | 2.112919e-60 | -8.615850e-47 |
| Msa0605020 | Msa0712100 | -0.800477 | 1.414805e-48 | -8.615850e-47 |
| Msa0605020 | Msa0747500 | 0.816145 | 6.431983e-52 | -8.615850e-47 |
| Msa0605020 | Msa0749900 | -0.820687 | 6.013619e-53 | -8.615850e-47 |
| Msa0605020 | Msa0753410 | 0.804200 | 2.421451e-49 | -8.615850e-47 |
| Msa0605020 | Msa0774560 | -0.819352 | 1.214816e-52 | -8.615850e-47 |
| Msa0605020 | Msa0797010 | -0.817238 | 3.657343e-52 | -8.615850e-47 |
| Msa0605020 | Msa0807130 | -0.809110 | 2.224424e-50 | -8.615850e-47 |
| Msa0605020 | Msa0807170 | -0.803797 | 2.936268e-49 | -8.615850e-47 |
| Msa0605020 | Msa0829110 | -0.800437 | 1.441870e-48 | -8.615850e-47 |
| Msa0605020 | Msa0830120 | -0.815439 | 9.237779e-52 | -8.615850e-47 |
| Msa0605020 | Msa0830450 | -0.813637 | 2.314346e-51 | -8.615850e-47 |
| Msa0605020 | Msa0840630 | -0.817808 | 2.721678e-52 | -8.615850e-47 |
| Msa0605020 | Msa0849130 | -0.812865 | 3.419702e-51 | -8.615850e-47 |
| Msa0605020 | Msa0896990 | 0.817952 | 2.524667e-52 | -8.615850e-47 |
| Msa0605020 | Msa0902340 | 0.801692 | 7.988093e-49 | -8.615850e-47 |
| Msa0605020 | Msa0933580 | 0.814528 | 1.471530e-51 | -8.615850e-47 |
| Msa0605020 | Msa0996940 | 0.810894 | 9.187329e-51 | -8.615850e-47 |
| Msa0605020 | Msa1007160 | 0.822545 | 2.236405e-53 | -8.615850e-47 |
| Msa0605020 | Msa1009150 | -0.809252 | 2.073838e-50 | -8.615850e-47 |
| Msa0605020 | Msa1009170 | -0.824918 | 6.221122e-54 | -8.615850e-47 |
| Msa0605020 | Msa1035790 | -0.826531 | 2.577439e-54 | -8.615850e-47 |
| Msa0605020 | Msa1039650 | 0.844787 | 6.089609e-59 | -8.615850e-47 |
| Msa0605020 | Msa1049810 | 0.813485 | 2.498819e-51 | -8.615850e-47 |
| Msa0605020 | Msa1049850 | 0.806089 | 9.742625e-50 | -8.615850e-47 |
| Msa0605020 | Msa1076640 | -0.801314 | 9.545878e-49 | -8.615850e-47 |
| Msa0605020 | Msa1079870 | 0.804389 | 2.212046e-49 | -8.615850e-47 |
| Msa0605020 | Msa1098350 | -0.824607 | 7.363070e-54 | -8.615850e-47 |
| Msa0605020 | Msa1109880 | 0.800158 | 1.642954e-48 | -8.615850e-47 |
| Msa0605020 | Msa1109890 | 0.812965 | 3.250281e-51 | -8.615850e-47 |
| Msa0605020 | Msa1112040 | 0.824612 | 7.343876e-54 | -8.615850e-47 |
| Msa0605020 | Msa1113280 | -0.813389 | 2.623226e-51 | -8.615850e-47 |
| Msa0605020 | Msa1117280 | -0.827495 | 1.516246e-54 | -8.615850e-47 |
| Msa0605020 | Msa1138110 | 0.804007 | 2.655542e-49 | -8.615850e-47 |
| Msa0605020 | Msa1138480 | -0.821096 | 4.840744e-53 | -8.615850e-47 |
| Msa0605020 | Msa1138490 | -0.811350 | 7.314390e-51 | -8.615850e-47 |
| Msa0605020 | Msa1152860 | 0.815154 | 1.069013e-51 | -8.615850e-47 |
| Msa0605020 | Msa1182400 | -0.821255 | 4.450195e-53 | -8.615850e-47 |
| Msa0605020 | Msa1199750 | -0.815641 | 8.328821e-52 | -8.615850e-47 |
| Msa0605020 | Msa1208250 | -0.831817 | 1.346516e-55 | -8.615850e-47 |
| Msa0605020 | Msa1214960 | 0.813542 | 2.428527e-51 | -8.615850e-47 |
| Msa0605020 | Msa1230190 | -0.816589 | 5.114727e-52 | -8.615850e-47 |
| Msa0605020 | Msa1239870 | 0.805068 | 1.595321e-49 | -8.615850e-47 |
| Msa0605020 | Msa1247720 | -0.812981 | 3.225283e-51 | -8.615850e-47 |
| Msa0605020 | Msa1258200 | -0.806102 | 9.679803e-50 | -8.615850e-47 |
| Msa0605020 | Msa1272770 | -0.801188 | 1.012973e-48 | -8.615850e-47 |
| Msa0605020 | Msa1279310 | -0.801696 | 7.969894e-49 | -8.615850e-47 |
| Msa0605020 | Msa1286950 | -0.800822 | 1.203404e-48 | -8.615850e-47 |
| Msa0605020 | Msa1304980 | 0.803451 | 3.463783e-49 | -8.615850e-47 |
| Msa0605020 | Msa1319230 | -0.810847 | 9.403137e-51 | -8.615850e-47 |
| Msa0605020 | Msa1327690 | -0.803802 | 2.929187e-49 | -8.615850e-47 |
| Msa0605020 | Msa1328600 | -0.824921 | 6.210464e-54 | -8.615850e-47 |
| Msa0605020 | Msa1357380 | -0.830394 | 3.010578e-55 | -8.615850e-47 |
| Msa0605020 | Msa1366700 | -0.805359 | 1.386519e-49 | -8.615850e-47 |
| Msa0605020 | Msa1369220 | -0.801260 | 9.792080e-49 | -8.615850e-47 |
| Msa0605020 | Msa1373560 | 0.806082 | 9.774402e-50 | -8.615850e-47 |
| Msa0605020 | Msa1395700 | -0.811015 | 8.647563e-51 | -8.615850e-47 |
| Msa0605020 | Msa1398110 | 0.801440 | 8.994217e-49 | -8.615850e-47 |
| Msa0605020 | Msa1412830 | -0.809157 | 2.173824e-50 | -8.615850e-47 |
| Msa0605020 | Msa1426690 | -0.809120 | 2.213437e-50 | -8.615850e-47 |
| Msa0605020 | Msa1432250 | -0.819730 | 9.961987e-53 | -8.615850e-47 |
| Msa0605020 | Msa1433060 | -0.805033 | 1.622712e-49 | -8.615850e-47 |
| Msa0605020 | Msa1433380 | -0.808656 | 2.782546e-50 | -8.615850e-47 |
| Msa0605020 | Msa1437650 | -0.826321 | 2.892038e-54 | -8.615850e-47 |
| Msa0605020 | Msa1443440 | -0.803914 | 2.776176e-49 | -8.615850e-47 |
| Msa0605020 | Msa1450850 | -0.808764 | 2.637808e-50 | -8.615850e-47 |
| Msa0605020 | Msa1459170 | -0.800089 | 1.697366e-48 | -8.615850e-47 |
| Msa0150910 | Msa0605020 | 0.813265 | 2.793815e-51 | -8.615850e-47 |
| Msa0192890 | Msa0605020 | 0.849240 | 3.671448e-60 | -8.615850e-47 |
| Msa0206600 | Msa0605020 | -0.800787 | 1.223140e-48 | -8.615850e-47 |
| Msa0218590 | Msa0605020 | -0.802015 | 6.855618e-49 | -8.615850e-47 |
| Msa0225370 | Msa0605020 | -0.810196 | 1.299848e-50 | -8.615850e-47 |
| Msa0235020 | Msa0605020 | 0.849149 | 3.891564e-60 | -8.615850e-47 |
| Msa0238420 | Msa0605020 | 0.805724 | 1.162873e-49 | -8.615850e-47 |
| Msa0375030 | Msa0605020 | 0.803923 | 2.765140e-49 | -8.615850e-47 |
| Msa0375500 | Msa0605020 | 0.868710 | 5.334660e-66 | -8.615850e-47 |
| Msa0384220 | Msa0605020 | 0.809835 | 1.555044e-50 | -8.615850e-47 |
| Msa0398690 | Msa0605020 | 0.800328 | 1.517614e-48 | -8.615850e-47 |
| Msa0404120 | Msa0605020 | 0.806664 | 7.369358e-50 | -8.615850e-47 |
| Msa0410960 | Msa0605020 | -0.822345 | 2.488974e-53 | -8.615850e-47 |
| Msa0424300 | Msa0605020 | 0.845136 | 4.900979e-59 | -8.615850e-47 |
| Msa0434890 | Msa0605020 | 0.841415 | 4.818001e-58 | -8.615850e-47 |
| Msa0438440 | Msa0605020 | -0.813680 | 2.264550e-51 | -8.615850e-47 |
| Msa0451760 | Msa0605020 | -0.805036 | 1.620489e-49 | -8.615850e-47 |
| Msa0452010 | Msa0605020 | -0.807418 | 5.105270e-50 | -8.615850e-47 |
| Msa0471210 | Msa0605020 | 0.863200 | 2.950333e-64 | -8.615850e-47 |
| Msa0241580 | Msa0605020 | -0.813979 | 1.945411e-51 | -8.615850e-47 |
| Msa0242390 | Msa0605020 | 0.803221 | 3.865566e-49 | -8.615850e-47 |
| Msa0242730 | Msa0605020 | 0.820118 | 8.123067e-53 | -8.615850e-47 |
| Msa0251140 | Msa0605020 | -0.823457 | 1.370765e-53 | -8.615850e-47 |
| Msa0258280 | Msa0605020 | -0.818328 | 2.076360e-52 | -8.615850e-47 |
| Msa0266380 | Msa0605020 | -0.832240 | 1.058166e-55 | -8.615850e-47 |
| Msa0273420 | Msa0605020 | 0.847586 | 1.052757e-59 | -8.615850e-47 |
| Msa0279490 | Msa0605020 | -0.813671 | 2.274420e-51 | -8.615850e-47 |
| Msa0281010 | Msa0605020 | 0.820595 | 6.313992e-53 | -8.615850e-47 |
| Msa0313680 | Msa0605020 | 0.848047 | 7.859723e-60 | -8.615850e-47 |
| Msa0315010 | Msa0605020 | -0.830339 | 3.105112e-55 | -8.615850e-47 |
| Msa0320180 | Msa0605020 | 0.827626 | 1.410358e-54 | -8.615850e-47 |
| Msa0341860 | Msa0605020 | -0.827460 | 1.545902e-54 | -8.615850e-47 |
| Msa0359630 | Msa0605020 | -0.800628 | 1.318355e-48 | -8.615850e-47 |
| Msa0503620 | Msa0605020 | -0.814654 | 1.379863e-51 | -8.615850e-47 |
| Msa0512430 | Msa0605020 | -0.808512 | 2.985910e-50 | -8.615850e-47 |
| Msa0515930 | Msa0605020 | 0.842668 | 2.246152e-58 | -8.615850e-47 |
| Msa0540160 | Msa0605020 | -0.818177 | 2.245447e-52 | -8.615850e-47 |
| Msa0543310 | Msa0605020 | -0.802027 | 6.815859e-49 | -8.615850e-47 |
| Msa0565530 | Msa0605020 | -0.835058 | 2.092569e-56 | -8.615850e-47 |
| Msa0599250 | Msa0605020 | -0.814242 | 1.701954e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605020 | MtrunA17_Chr4g0034301 | 99.375 | 160 | 1 | 0 | 1 | 160 | 1 | 160 | 1.12e-115 | 324 |
| Msa0605020 | MtrunA17_Chr2g0305551 | 81.333 | 150 | 28 | 0 | 8 | 157 | 13 | 162 | 2.59e-87 | 253 |
| Msa0605020 | MtrunA17_Chr2g0305541 | 81.879 | 149 | 27 | 0 | 9 | 157 | 9 | 157 | 5.26e-87 | 252 |
| Msa0605020 | MtrunA17_Chr4g0034311 | 83.221 | 149 | 25 | 0 | 9 | 157 | 185 | 333 | 2.15e-85 | 254 |
| Msa0605020 | MtrunA17_Chr4g0034311 | 79.487 | 156 | 29 | 1 | 2 | 157 | 10 | 162 | 9.10e-84 | 250 |
| Msa0605020 | MtrunA17_Chr1g0197501 | 48.000 | 150 | 77 | 1 | 8 | 156 | 22 | 171 | 2.49e-38 | 128 |
| Msa0605020 | MtrunA17_Chr5g0417631 | 47.651 | 149 | 74 | 2 | 8 | 156 | 2 | 146 | 6.74e-37 | 124 |
| Msa0605020 | MtrunA17_Chr5g0435991 | 45.638 | 149 | 77 | 2 | 8 | 156 | 2 | 146 | 1.57e-36 | 123 |
| Msa0605020 | MtrunA17_Chr5g0435621 | 45.638 | 149 | 77 | 2 | 8 | 156 | 2 | 146 | 3.37e-36 | 122 |
| Msa0605020 | MtrunA17_Chr1g0148751 | 47.651 | 149 | 73 | 3 | 8 | 156 | 2 | 145 | 2.53e-35 | 120 |
| Msa0605020 | MtrunA17_Chr5g0435981 | 46.309 | 149 | 75 | 3 | 8 | 156 | 2 | 145 | 3.15e-34 | 117 |
| Msa0605020 | MtrunA17_Chr5g0427351 | 45.270 | 148 | 77 | 2 | 9 | 156 | 3 | 146 | 6.57e-34 | 116 |
| Msa0605020 | MtrunA17_Chr5g0435611 | 44.000 | 150 | 80 | 2 | 8 | 157 | 2 | 147 | 3.41e-33 | 115 |
| Msa0605020 | MtrunA17_Chr1g0197531 | 44.295 | 149 | 80 | 1 | 8 | 156 | 2 | 147 | 5.68e-33 | 114 |
| Msa0605020 | MtrunA17_Chr1g0170851 | 41.892 | 148 | 83 | 1 | 9 | 156 | 3 | 147 | 8.18e-31 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605020 | AT2G16060.1 | 79.605 | 152 | 31 | 0 | 9 | 160 | 9 | 160 | 1.93e-88 | 255 |
| Msa0605020 | AT3G10520.1 | 52.667 | 150 | 71 | 0 | 8 | 157 | 5 | 154 | 6.93e-51 | 160 |
Find 32 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACACTTACCCTTCAGAATA+TGG | 0.210157 | 4_2:-50788642 | Msa0605020:exon |
| CTACTACACCATATTTAAAA+TGG | 0.249717 | 4_2:+50787783 | None:intergenic |
| GGTGACAAAGTTTGCACTAT+TGG | 0.325692 | 4_2:-50787589 | Msa0605020:CDS |
| AAAAGATTCAAAAGTTCCTT+TGG | 0.334733 | 4_2:-50788365 | Msa0605020:CDS |
| TTCTCTGACCGTGACTTTAC+CGG | 0.339739 | 4_2:+50787832 | None:intergenic |
| CCTTCAGAATATGGGCACTT+TGG | 0.384904 | 4_2:-50788633 | Msa0605020:exon |
| TATAAACTAGAGAGTTTAAG+AGG | 0.396192 | 4_2:+50787458 | None:intergenic |
| AAGAAGAATTCTGCAGAGTT+AGG | 0.397154 | 4_2:-50788551 | Msa0605020:CDS |
| AACTAGAGAGTTTAAGAGGA+AGG | 0.427518 | 4_2:+50787462 | None:intergenic |
| ATAGCCGGTGACCACATTTC+AGG | 0.433187 | 4_2:+50787546 | None:intergenic |
| TAAGTGTTACGTGCTAATTA+AGG | 0.453125 | 4_2:+50788657 | None:intergenic |
| GCAGTTCAATTGCGGAAATC+CGG | 0.465498 | 4_2:-50787851 | Msa0605020:CDS |
| ATGGGCACTTTGGATACAAA+AGG | 0.471419 | 4_2:-50788623 | Msa0605020:CDS |
| CCCCATGCATTCTTCATAGC+CGG | 0.478259 | 4_2:+50787531 | None:intergenic |
| TAATTAAGGTATGTGATTTG+TGG | 0.489143 | 4_2:+50788671 | None:intergenic |
| TGCCATGTCTGTCTTTCTCA+TGG | 0.508395 | 4_2:-50788317 | Msa0605020:intron |
| ACACTTACCCTTCAGAATAT+GGG | 0.519885 | 4_2:-50788641 | Msa0605020:exon |
| CACCGGCTATGAAGAATGCA+TGG | 0.521161 | 4_2:-50787533 | Msa0605020:CDS |
| GGGAGAAGCTTATGATCAGC+TGG | 0.524272 | 4_2:-50787511 | Msa0605020:CDS |
| AAGCTCTTGTGGTGAAGTCA+TGG | 0.525782 | 4_2:-50788583 | Msa0605020:CDS |
| CCAAAGTGCCCATATTCTGA+AGG | 0.558548 | 4_2:+50788633 | None:intergenic |
| ACCGGCTATGAAGAATGCAT+GGG | 0.592597 | 4_2:-50787532 | Msa0605020:CDS |
| CAAAGTGCCCATATTCTGAA+GGG | 0.600691 | 4_2:+50788634 | None:intergenic |
| AGTACCTGAAATGTGGTCAC+CGG | 0.611768 | 4_2:-50787550 | Msa0605020:CDS |
| GTGAATCAGCAGTTCAATTG+CGG | 0.612574 | 4_2:-50787859 | Msa0605020:CDS |
| CATGGCATGAGGCTTGAGCT+TGG | 0.612875 | 4_2:+50788333 | None:intergenic |
| TGAAGAACAAGAAGCTCTTG+TGG | 0.616139 | 4_2:-50788594 | Msa0605020:CDS |
| AAGAAGCAGTACCTGAAATG+TGG | 0.626355 | 4_2:-50787557 | Msa0605020:CDS |
| GCGGAAATCCGGTAAAGTCA+CGG | 0.634999 | 4_2:-50787840 | Msa0605020:CDS |
| AGAAAGACAGACATGGCATG+AGG | 0.665594 | 4_2:+50788322 | None:intergenic |
| CCGGCTATGAAGAATGCATG+GGG | 0.704265 | 4_2:-50787531 | Msa0605020:CDS |
| TACCATGAGAAAGACAGACA+TGG | 0.720993 | 4_2:+50788315 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAGTATATTTTTTTTACT+AGG | - | chr4_2:50788421-50788440 | Msa0605020:intron | 10.0% |
| !!! | TAAGTATATTTTTTTTACTA+GGG | - | chr4_2:50788422-50788441 | Msa0605020:intron | 10.0% |
| !!! | TTTAATTTTTTGATTTTGTA+AGG | - | chr4_2:50788541-50788560 | Msa0605020:CDS | 10.0% |
| !!! | ATAAGTATATTTTTTTTACT+AGG | - | chr4_2:50788421-50788440 | Msa0605020:intron | 10.0% |
| !!! | TAAGTATATTTTTTTTACTA+GGG | - | chr4_2:50788422-50788441 | Msa0605020:intron | 10.0% |
| !!! | TTTAATTTTTTGATTTTGTA+AGG | - | chr4_2:50788541-50788560 | Msa0605020:CDS | 10.0% |
| !! | TTACATTAAAATTTGACATA+AGG | - | chr4_2:50788477-50788496 | Msa0605020:intron | 15.0% |
| !! | TTACATTAAAATTTGACATA+AGG | - | chr4_2:50788477-50788496 | Msa0605020:intron | 15.0% |
| !!! | CTAATTCAGTAACTAAATTT+TGG | - | chr4_2:50787921-50787940 | Msa0605020:intron | 20.0% |
| !! | TATCATTTCTCATATTCAAA+TGG | + | chr4_2:50788059-50788078 | None:intergenic | 20.0% |
| !! | TTAAAATTTGACATAAGGTT+TGG | - | chr4_2:50788482-50788501 | Msa0605020:intron | 20.0% |
| !!! | CTAATTCAGTAACTAAATTT+TGG | - | chr4_2:50787921-50787940 | Msa0605020:intron | 20.0% |
| !! | TATCATTTCTCATATTCAAA+TGG | + | chr4_2:50788059-50788078 | None:intergenic | 20.0% |
| !! | TTAAAATTTGACATAAGGTT+TGG | - | chr4_2:50788482-50788501 | Msa0605020:intron | 20.0% |
| ! | TAATTAAGGTATGTGATTTG+TGG | + | chr4_2:50787483-50787502 | None:intergenic | 25.0% |
| !!! | TTTTTTTGAAGTAAGTAGCT+AGG | - | chr4_2:50787631-50787650 | Msa0605020:intron | 25.0% |
| !!! | TTCAACATTTTTTACTCAAG+AGG | - | chr4_2:50787660-50787679 | Msa0605020:intron | 25.0% |
| ! | AAAAGATTCAAAAGTTCCTT+TGG | - | chr4_2:50787786-50787805 | Msa0605020:CDS | 25.0% |
| ! | TTTAGTTACTGAATTAGAGA+CGG | + | chr4_2:50787918-50787937 | None:intergenic | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | + | chr4_2:50788160-50788179 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCTCACTTCTTAT+TGG | + | chr4_2:50788173-50788192 | None:intergenic | 25.0% |
| ! | AATAAGAAGTGAGAAAAACA+AGG | - | chr4_2:50788172-50788191 | Msa0605020:intron | 25.0% |
| ! | GCAATAACAAAATAATTAGC+TGG | + | chr4_2:50788266-50788285 | None:intergenic | 25.0% |
| ! | GAATCAAGCTTGAAAAAATT+AGG | - | chr4_2:50788339-50788358 | Msa0605020:CDS | 25.0% |
| ! | CTACTACACCATATTTAAAA+TGG | + | chr4_2:50788371-50788390 | None:intergenic | 25.0% |
| ! | TAATTAAGGTATGTGATTTG+TGG | + | chr4_2:50787483-50787502 | None:intergenic | 25.0% |
| !!! | TTTTTTTGAAGTAAGTAGCT+AGG | - | chr4_2:50787631-50787650 | Msa0605020:intron | 25.0% |
| !!! | TTCAACATTTTTTACTCAAG+AGG | - | chr4_2:50787660-50787679 | Msa0605020:intron | 25.0% |
| ! | AAAAGATTCAAAAGTTCCTT+TGG | - | chr4_2:50787786-50787805 | Msa0605020:CDS | 25.0% |
| ! | TTTAGTTACTGAATTAGAGA+CGG | + | chr4_2:50787918-50787937 | None:intergenic | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | + | chr4_2:50788160-50788179 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCTCACTTCTTAT+TGG | + | chr4_2:50788173-50788192 | None:intergenic | 25.0% |
| ! | AATAAGAAGTGAGAAAAACA+AGG | - | chr4_2:50788172-50788191 | Msa0605020:intron | 25.0% |
| ! | GCAATAACAAAATAATTAGC+TGG | + | chr4_2:50788266-50788285 | None:intergenic | 25.0% |
| ! | GAATCAAGCTTGAAAAAATT+AGG | - | chr4_2:50788339-50788358 | Msa0605020:CDS | 25.0% |
| ! | CTACTACACCATATTTAAAA+TGG | + | chr4_2:50788371-50788390 | None:intergenic | 25.0% |
| TAAGTGTTACGTGCTAATTA+AGG | + | chr4_2:50787497-50787516 | None:intergenic | 30.0% | |
| AAGAGAAAGTTGTCAAAAAG+TGG | + | chr4_2:50788091-50788110 | None:intergenic | 30.0% | |
| AAAACAATGGAGAGAGAAAA+AGG | + | chr4_2:50788147-50788166 | None:intergenic | 30.0% | |
| TCAACAAAGTTGTCATCAAA+TGG | - | chr4_2:50788198-50788217 | Msa0605020:intron | 30.0% | |
| ! | GGTGCTAACCATTTTAAATA+TGG | - | chr4_2:50788360-50788379 | Msa0605020:CDS | 30.0% |
| TAAGTGTTACGTGCTAATTA+AGG | + | chr4_2:50787497-50787516 | None:intergenic | 30.0% | |
| AAGAGAAAGTTGTCAAAAAG+TGG | + | chr4_2:50788091-50788110 | None:intergenic | 30.0% | |
| AAAACAATGGAGAGAGAAAA+AGG | + | chr4_2:50788147-50788166 | None:intergenic | 30.0% | |
| TCAACAAAGTTGTCATCAAA+TGG | - | chr4_2:50788198-50788217 | Msa0605020:intron | 30.0% | |
| ! | GGTGCTAACCATTTTAAATA+TGG | - | chr4_2:50788360-50788379 | Msa0605020:CDS | 30.0% |
| AACACTTACCCTTCAGAATA+TGG | - | chr4_2:50787509-50787528 | Msa0605020:CDS | 35.0% | |
| ACACTTACCCTTCAGAATAT+GGG | - | chr4_2:50787510-50787529 | Msa0605020:CDS | 35.0% | |
| AAGAAGAATTCTGCAGAGTT+AGG | - | chr4_2:50787600-50787619 | Msa0605020:intron | 35.0% | |
| AAATCCGTCTCTAATGTACT+CGG | + | chr4_2:50787948-50787967 | None:intergenic | 35.0% | |
| TGACAAAGTCAAAGCTTGAA+TGG | + | chr4_2:50788022-50788041 | None:intergenic | 35.0% | |
| TCTCATATTCAAATGGTGAG+TGG | + | chr4_2:50788052-50788071 | None:intergenic | 35.0% | |
| !! | TTCAGGTACTGCTTCTTTTA+TGG | + | chr4_2:50788591-50788610 | None:intergenic | 35.0% |
| AACACTTACCCTTCAGAATA+TGG | - | chr4_2:50787509-50787528 | Msa0605020:CDS | 35.0% | |
| ACACTTACCCTTCAGAATAT+GGG | - | chr4_2:50787510-50787529 | Msa0605020:CDS | 35.0% | |
| AAGAAGAATTCTGCAGAGTT+AGG | - | chr4_2:50787600-50787619 | Msa0605020:intron | 35.0% | |
| AAATCCGTCTCTAATGTACT+CGG | + | chr4_2:50787948-50787967 | None:intergenic | 35.0% | |
| TGACAAAGTCAAAGCTTGAA+TGG | + | chr4_2:50788022-50788041 | None:intergenic | 35.0% | |
| TCTCATATTCAAATGGTGAG+TGG | + | chr4_2:50788052-50788071 | None:intergenic | 35.0% | |
| !! | TTCAGGTACTGCTTCTTTTA+TGG | + | chr4_2:50788591-50788610 | None:intergenic | 35.0% |
| ! | CAAAGTGCCCATATTCTGAA+GGG | + | chr4_2:50787520-50787539 | None:intergenic | 40.0% |
| ATGGGCACTTTGGATACAAA+AGG | - | chr4_2:50787528-50787547 | Msa0605020:CDS | 40.0% | |
| TGAAGAACAAGAAGCTCTTG+TGG | - | chr4_2:50787557-50787576 | Msa0605020:CDS | 40.0% | |
| !! | GAGAACAGTTTTTGAGCTGA+TGG | + | chr4_2:50787760-50787779 | None:intergenic | 40.0% |
| TACCATGAGAAAGACAGACA+TGG | + | chr4_2:50787839-50787858 | None:intergenic | 40.0% | |
| AGAGAGAAAAAGGAAGAGAG+AGG | + | chr4_2:50788137-50788156 | None:intergenic | 40.0% | |
| GTGAATCAGCAGTTCAATTG+CGG | - | chr4_2:50788292-50788311 | Msa0605020:intron | 40.0% | |
| ! | TGTAGTAGACGAGCATTTTG+AGG | - | chr4_2:50788383-50788402 | Msa0605020:CDS | 40.0% |
| GGTGACAAAGTTTGCACTAT+TGG | - | chr4_2:50788562-50788581 | Msa0605020:CDS | 40.0% | |
| AAGAAGCAGTACCTGAAATG+TGG | - | chr4_2:50788594-50788613 | Msa0605020:CDS | 40.0% | |
| ! | CAAAGTGCCCATATTCTGAA+GGG | + | chr4_2:50787520-50787539 | None:intergenic | 40.0% |
| ATGGGCACTTTGGATACAAA+AGG | - | chr4_2:50787528-50787547 | Msa0605020:CDS | 40.0% | |
| TGAAGAACAAGAAGCTCTTG+TGG | - | chr4_2:50787557-50787576 | Msa0605020:CDS | 40.0% | |
| !! | GAGAACAGTTTTTGAGCTGA+TGG | + | chr4_2:50787760-50787779 | None:intergenic | 40.0% |
| TACCATGAGAAAGACAGACA+TGG | + | chr4_2:50787839-50787858 | None:intergenic | 40.0% | |
| AGAGAGAAAAAGGAAGAGAG+AGG | + | chr4_2:50788137-50788156 | None:intergenic | 40.0% | |
| GTGAATCAGCAGTTCAATTG+CGG | - | chr4_2:50788292-50788311 | Msa0605020:intron | 40.0% | |
| ! | TGTAGTAGACGAGCATTTTG+AGG | - | chr4_2:50788383-50788402 | Msa0605020:CDS | 40.0% |
| GGTGACAAAGTTTGCACTAT+TGG | - | chr4_2:50788562-50788581 | Msa0605020:CDS | 40.0% | |
| AAGAAGCAGTACCTGAAATG+TGG | - | chr4_2:50788594-50788613 | Msa0605020:CDS | 40.0% | |
| ! | CCAAAGTGCCCATATTCTGA+AGG | + | chr4_2:50787521-50787540 | None:intergenic | 45.0% |
| CCTTCAGAATATGGGCACTT+TGG | - | chr4_2:50787518-50787537 | Msa0605020:CDS | 45.0% | |
| AAGCTCTTGTGGTGAAGTCA+TGG | - | chr4_2:50787568-50787587 | Msa0605020:CDS | 45.0% | |
| !!! | AGCTTGGTGTTTTGCTCCAA+AGG | + | chr4_2:50787805-50787824 | None:intergenic | 45.0% |
| AGAAAGACAGACATGGCATG+AGG | + | chr4_2:50787832-50787851 | None:intergenic | 45.0% | |
| TGCCATGTCTGTCTTTCTCA+TGG | - | chr4_2:50787834-50787853 | Msa0605020:CDS | 45.0% | |
| TGGACCGAGTACATTAGAGA+CGG | - | chr4_2:50787941-50787960 | Msa0605020:intron | 45.0% | |
| AGTCAAAGCTTGAATGGTCG+TGG | + | chr4_2:50788016-50788035 | None:intergenic | 45.0% | |
| GCAGTTCAATTGCGGAAATC+CGG | - | chr4_2:50788300-50788319 | Msa0605020:intron | 45.0% | |
| TTCTCTGACCGTGACTTTAC+CGG | + | chr4_2:50788322-50788341 | None:intergenic | 45.0% | |
| AGTACCTGAAATGTGGTCAC+CGG | - | chr4_2:50788601-50788620 | Msa0605020:CDS | 45.0% | |
| ACCGGCTATGAAGAATGCAT+GGG | - | chr4_2:50788619-50788638 | Msa0605020:CDS | 45.0% | |
| ! | CCAAAGTGCCCATATTCTGA+AGG | + | chr4_2:50787521-50787540 | None:intergenic | 45.0% |
| CCTTCAGAATATGGGCACTT+TGG | - | chr4_2:50787518-50787537 | Msa0605020:CDS | 45.0% | |
| AAGCTCTTGTGGTGAAGTCA+TGG | - | chr4_2:50787568-50787587 | Msa0605020:CDS | 45.0% | |
| !!! | AGCTTGGTGTTTTGCTCCAA+AGG | + | chr4_2:50787805-50787824 | None:intergenic | 45.0% |
| AGAAAGACAGACATGGCATG+AGG | + | chr4_2:50787832-50787851 | None:intergenic | 45.0% | |
| TGCCATGTCTGTCTTTCTCA+TGG | - | chr4_2:50787834-50787853 | Msa0605020:CDS | 45.0% | |
| TGGACCGAGTACATTAGAGA+CGG | - | chr4_2:50787941-50787960 | Msa0605020:intron | 45.0% | |
| AGTCAAAGCTTGAATGGTCG+TGG | + | chr4_2:50788016-50788035 | None:intergenic | 45.0% | |
| GCAGTTCAATTGCGGAAATC+CGG | - | chr4_2:50788300-50788319 | Msa0605020:intron | 45.0% | |
| TTCTCTGACCGTGACTTTAC+CGG | + | chr4_2:50788322-50788341 | None:intergenic | 45.0% | |
| AGTACCTGAAATGTGGTCAC+CGG | - | chr4_2:50788601-50788620 | Msa0605020:CDS | 45.0% | |
| ACCGGCTATGAAGAATGCAT+GGG | - | chr4_2:50788619-50788638 | Msa0605020:CDS | 45.0% | |
| GCGGAAATCCGGTAAAGTCA+CGG | - | chr4_2:50788311-50788330 | Msa0605020:intron | 50.0% | |
| ATAGCCGGTGACCACATTTC+AGG | + | chr4_2:50788608-50788627 | None:intergenic | 50.0% | |
| ! | CACCGGCTATGAAGAATGCA+TGG | - | chr4_2:50788618-50788637 | Msa0605020:CDS | 50.0% |
| CCCCATGCATTCTTCATAGC+CGG | + | chr4_2:50788623-50788642 | None:intergenic | 50.0% | |
| CCGGCTATGAAGAATGCATG+GGG | - | chr4_2:50788620-50788639 | Msa0605020:CDS | 50.0% | |
| GGGAGAAGCTTATGATCAGC+TGG | - | chr4_2:50788640-50788659 | Msa0605020:exon | 50.0% | |
| GCGGAAATCCGGTAAAGTCA+CGG | - | chr4_2:50788311-50788330 | Msa0605020:intron | 50.0% | |
| ATAGCCGGTGACCACATTTC+AGG | + | chr4_2:50788608-50788627 | None:intergenic | 50.0% | |
| ! | CACCGGCTATGAAGAATGCA+TGG | - | chr4_2:50788618-50788637 | Msa0605020:CDS | 50.0% |
| CCCCATGCATTCTTCATAGC+CGG | + | chr4_2:50788623-50788642 | None:intergenic | 50.0% | |
| CCGGCTATGAAGAATGCATG+GGG | - | chr4_2:50788620-50788639 | Msa0605020:CDS | 50.0% | |
| GGGAGAAGCTTATGATCAGC+TGG | - | chr4_2:50788640-50788659 | Msa0605020:exon | 50.0% | |
| CATGGCATGAGGCTTGAGCT+TGG | + | chr4_2:50787821-50787840 | None:intergenic | 55.0% | |
| CATGGCATGAGGCTTGAGCT+TGG | + | chr4_2:50787821-50787840 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 50787473 | 50788700 | 50787473 | ID=Msa0605020;Name=Msa0605020 |
| chr4_2 | mRNA | 50787473 | 50788700 | 50787473 | ID=Msa0605020-mRNA-1;Parent=Msa0605020;Name=Msa0605020-mRNA-1;_AED=0.09;_eAED=0.09;_QI=55|1|0.75|1|1|1|4|0|160 |
| chr4_2 | exon | 50787473 | 50787610 | 50787473 | ID=Msa0605020-mRNA-1:exon:12031;Parent=Msa0605020-mRNA-1 |
| chr4_2 | exon | 50787769 | 50787885 | 50787769 | ID=Msa0605020-mRNA-1:exon:12030;Parent=Msa0605020-mRNA-1 |
| chr4_2 | exon | 50788318 | 50788432 | 50788318 | ID=Msa0605020-mRNA-1:exon:12029;Parent=Msa0605020-mRNA-1 |
| chr4_2 | exon | 50788533 | 50788700 | 50788533 | ID=Msa0605020-mRNA-1:exon:12028;Parent=Msa0605020-mRNA-1 |
| chr4_2 | five_prime_UTR | 50788646 | 50788700 | 50788646 | ID=Msa0605020-mRNA-1:five_prime_utr;Parent=Msa0605020-mRNA-1 |
| chr4_2 | CDS | 50788533 | 50788645 | 50788533 | ID=Msa0605020-mRNA-1:cds;Parent=Msa0605020-mRNA-1 |
| chr4_2 | CDS | 50788318 | 50788432 | 50788318 | ID=Msa0605020-mRNA-1:cds;Parent=Msa0605020-mRNA-1 |
| chr4_2 | CDS | 50787769 | 50787885 | 50787769 | ID=Msa0605020-mRNA-1:cds;Parent=Msa0605020-mRNA-1 |
| chr4_2 | CDS | 50787473 | 50787610 | 50787473 | ID=Msa0605020-mRNA-1:cds;Parent=Msa0605020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
