Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258920 | XP_024633260.1 | 100.000 | 108 | 0 | 0 | 1 | 108 | 1 | 108 | 1.79e-69 | 213 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258920 | A0A396JEH2 | 100.000 | 108 | 0 | 0 | 1 | 108 | 1 | 108 | 8.53e-70 | 213 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0219290 | Msa0258920 | 0.990550 | 3.605987e-183 | -8.615850e-47 |
| Msa0238070 | Msa0258920 | 0.839591 | 1.446327e-57 | -8.615850e-47 |
| Msa0258920 | Msa0298390 | 0.979026 | 4.495767e-147 | -8.615850e-47 |
| Msa0258920 | Msa0380040 | -0.816472 | 5.434099e-52 | -8.615850e-47 |
| Msa0258920 | Msa0430620 | -0.803319 | 3.688842e-49 | -8.615850e-47 |
| Msa0258920 | Msa0519220 | -0.800622 | 1.322182e-48 | -8.615850e-47 |
| Msa0258920 | Msa0673010 | 0.832447 | 9.405099e-56 | -8.615850e-47 |
| Msa0258920 | Msa0692080 | -0.802655 | 5.061985e-49 | -8.615850e-47 |
| Msa0258920 | Msa0824680 | -0.805560 | 1.258623e-49 | -8.615850e-47 |
| Msa0258920 | Msa0837660 | -0.812097 | 5.033116e-51 | -8.615850e-47 |
| Msa0258920 | Msa0976310 | -0.808295 | 3.322127e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258920 | MtrunA17_Chr2g0321751 | 100.000 | 108 | 0 | 0 | 1 | 108 | 1 | 108 | 1.64e-73 | 213 |
| Msa0258920 | MtrunA17_Chr4g0025951 | 68.354 | 79 | 25 | 0 | 13 | 91 | 14 | 92 | 1.33e-33 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258920 | AT5G22280.1 | 56.881 | 109 | 45 | 2 | 1 | 108 | 1 | 108 | 1.96e-36 | 120 |
| Msa0258920 | AT5G22280.2 | 50.526 | 95 | 45 | 2 | 15 | 108 | 7 | 100 | 9.39e-25 | 90.1 |
| Msa0258920 | AT3G44280.1 | 59.259 | 108 | 42 | 2 | 1 | 107 | 1 | 107 | 1.30e-22 | 85.1 |
| Msa0258920 | AT5G22280.3 | 50.704 | 71 | 34 | 1 | 1 | 71 | 1 | 70 | 6.57e-17 | 71.2 |
| Msa0258920 | AT5G06265.1 | 43.182 | 88 | 44 | 2 | 1 | 83 | 1 | 87 | 4.92e-16 | 68.2 |
| Msa0258920 | AT5G06265.6 | 43.182 | 88 | 44 | 2 | 1 | 83 | 1 | 87 | 4.92e-16 | 68.2 |
| Msa0258920 | AT5G06265.5 | 43.182 | 88 | 44 | 2 | 1 | 83 | 1 | 87 | 4.92e-16 | 68.2 |
| Msa0258920 | AT5G06265.8 | 43.182 | 88 | 44 | 2 | 1 | 83 | 1 | 87 | 4.92e-16 | 68.2 |
| Msa0258920 | AT5G06265.2 | 43.182 | 88 | 44 | 2 | 1 | 83 | 1 | 87 | 4.92e-16 | 68.2 |
| Msa0258920 | AT5G06265.9 | 43.182 | 88 | 44 | 2 | 1 | 83 | 1 | 87 | 4.92e-16 | 68.2 |
| Msa0258920 | AT5G06265.3 | 43.182 | 88 | 44 | 2 | 1 | 83 | 1 | 87 | 4.92e-16 | 68.2 |
| Msa0258920 | AT5G06265.10 | 43.182 | 88 | 44 | 2 | 1 | 83 | 1 | 87 | 4.92e-16 | 68.2 |
| Msa0258920 | AT5G06265.7 | 43.182 | 88 | 44 | 2 | 1 | 83 | 1 | 87 | 4.92e-16 | 68.2 |
| Msa0258920 | AT5G06265.4 | 43.182 | 88 | 44 | 2 | 1 | 83 | 62 | 148 | 1.80e-15 | 68.2 |
Find 50 sgRNAs with CRISPR-Local
Find 275 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGAAGTTTGTGAAGAAAA+TGG | 0.176262 | 2_2:+55603091 | Msa0258920:three_prime_UTR |
| TATCGATCTGTGAGGAGTTT+AGG | 0.214733 | 2_2:-55599204 | None:intergenic |
| TTGATACTGTAATTATTATT+AGG | 0.241356 | 2_2:+55599458 | Msa0258920:five_prime_UTR |
| ATCGATCTGTGAGGAGTTTA+GGG | 0.278250 | 2_2:-55599203 | None:intergenic |
| TAACTCTATTCTTAACAAAA+TGG | 0.283953 | 2_2:-55603058 | None:intergenic |
| TTCCTCAGAGTGTGAGGTTA+GGG | 0.297890 | 2_2:-55599169 | None:intergenic |
| TGAACTTGTGCGGCATCTTC+AGG | 0.299337 | 2_2:+55602715 | Msa0258920:CDS |
| TCAAGAATCCGCTCAGTTAG+AGG | 0.329822 | 2_2:-55602791 | None:intergenic |
| TTTCCTCAGAGTGTGAGGTT+AGG | 0.356265 | 2_2:-55599170 | None:intergenic |
| ATGAAGTTTGTGATATGTTA+TGG | 0.388157 | 2_2:-55598991 | None:intergenic |
| AAGAAGTTTGTGAAGAAAAT+GGG | 0.405182 | 2_2:+55603092 | Msa0258920:three_prime_UTR |
| CGCGGTGGTTGAGGTCGGTT+GGG | 0.441896 | 2_2:-55599081 | None:intergenic |
| CGACAAATATCAAAATATGC+TGG | 0.465046 | 2_2:+55603034 | Msa0258920:three_prime_UTR |
| TGTTTCTTAATTCCTTCAAA+AGG | 0.474668 | 2_2:+55602895 | Msa0258920:three_prime_UTR |
| AATGATAAACGCGGTGGTTG+AGG | 0.477744 | 2_2:-55599090 | None:intergenic |
| CCTCAGAGTGTGAGGTTAGG+GGG | 0.482994 | 2_2:-55599167 | None:intergenic |
| CTTACGGAAGAGTGTTATTG+AGG | 0.484074 | 2_2:-55599242 | None:intergenic |
| CCCTCTTTCCTCAGAGTGTG+AGG | 0.492429 | 2_2:-55599175 | None:intergenic |
| AAAACGCGTTACTCTGCTGC+AGG | 0.500325 | 2_2:+55599022 | Msa0258920:five_prime_UTR |
| ACGCGGTGGTTGAGGTCGGT+TGG | 0.500554 | 2_2:-55599082 | None:intergenic |
| GTGAAGAAAATGGGTTGGAA+AGG | 0.511830 | 2_2:+55603101 | Msa0258920:three_prime_UTR |
| ATACTGTAATTATTATTAGG+AGG | 0.527928 | 2_2:+55599461 | Msa0258920:five_prime_UTR |
| GACAAATATCAAAATATGCT+GGG | 0.527963 | 2_2:+55603035 | Msa0258920:three_prime_UTR |
| GAGGAGGAAAGATATAGAAA+CGG | 0.533501 | 2_2:-55599126 | None:intergenic |
| GCTTCATTAACATGCTGCAA+AGG | 0.540262 | 2_2:-55602846 | None:intergenic |
| GGTGAGAAAGTAAGTTTGGG+AGG | 0.541097 | 2_2:-55599145 | None:intergenic |
| TGAAGAAACTGTTAAAGAGA+AGG | 0.542240 | 2_2:+55599625 | Msa0258920:CDS |
| CTCAGAGTGTGAGGTTAGGG+GGG | 0.545358 | 2_2:-55599166 | None:intergenic |
| AACAAGAAAACAAGCAACAT+AGG | 0.548448 | 2_2:-55599497 | None:intergenic |
| CCTCACACTCTGAGGAAAGA+GGG | 0.549170 | 2_2:+55599175 | Msa0258920:five_prime_UTR |
| TCCTCAGAGTGTGAGGTTAG+GGG | 0.550882 | 2_2:-55599168 | None:intergenic |
| AGTTTGTGAAGAAAATGGGT+TGG | 0.557736 | 2_2:+55603096 | Msa0258920:three_prime_UTR |
| ACCTCACACTCTGAGGAAAG+AGG | 0.558960 | 2_2:+55599174 | Msa0258920:five_prime_UTR |
| CAGCAGTGCAAAGGAAGCAA+TGG | 0.562786 | 2_2:+55602746 | Msa0258920:CDS |
| GGAACTATAAATAGCACTGT+AGG | 0.564242 | 2_2:+55602767 | Msa0258920:CDS |
| TAATCACTTCGCAATTCGAG+TGG | 0.583936 | 2_2:+55599531 | Msa0258920:CDS |
| GAGAAAGTAAGTTTGGGAGG+AGG | 0.585973 | 2_2:-55599142 | None:intergenic |
| GAACAACTGCAGCAGTGCAA+AGG | 0.593769 | 2_2:+55602737 | Msa0258920:CDS |
| ATAAACGCGGTGGTTGAGGT+CGG | 0.596120 | 2_2:-55599086 | None:intergenic |
| TATTAGGAGGAATCATGTCA+AGG | 0.619548 | 2_2:+55599474 | Msa0258920:exon |
| GACTCAACATCAGACACAAG+TGG | 0.644435 | 2_2:-55599560 | None:intergenic |
| CTCACACTCTGAGGAAAGAG+GGG | 0.645340 | 2_2:+55599176 | Msa0258920:five_prime_UTR |
| GAAGACTTAATGAACTTGTG+CGG | 0.669388 | 2_2:+55602705 | Msa0258920:CDS |
| TTGGGAAGTGAAAGCGACGA+CGG | 0.677407 | 2_2:-55599063 | None:intergenic |
| TATAGAAACGGAGAGTGACG+TGG | 0.699564 | 2_2:-55599114 | None:intergenic |
| TCACACTCTGAGGAAAGAGG+GGG | 0.700157 | 2_2:+55599177 | Msa0258920:five_prime_UTR |
| CTGTAGGTCCTCTAACTGAG+CGG | 0.706930 | 2_2:+55602783 | Msa0258920:CDS |
| AAATTCATTATCGATCTGTG+AGG | 0.738628 | 2_2:-55599212 | None:intergenic |
| TGACGTGGCAATGATAAACG+CGG | 0.768474 | 2_2:-55599099 | None:intergenic |
| CGTGGCAATGATAAACGCGG+TGG | 0.769199 | 2_2:-55599096 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAATTTAGATTTGTTTT+GGG | - | chr2_2:55600189-55600208 | None:intergenic | 10.0% |
| !!! | TTTAAAATTTAGATTTGTTT+TGG | - | chr2_2:55600190-55600209 | None:intergenic | 10.0% |
| !! | ATATATTATTAATATGAGAA+GGG | - | chr2_2:55602401-55602420 | None:intergenic | 10.0% |
| !! | AATATATTATTAATATGAGA+AGG | - | chr2_2:55602402-55602421 | None:intergenic | 10.0% |
| !! | TTGATACTGTAATTATTATT+AGG | + | chr2_2:55599458-55599477 | Msa0258920:five_prime_UTR | 15.0% |
| !!! | TTTTCTTATCTTTTTATGTT+TGG | + | chr2_2:55599658-55599677 | Msa0258920:intron | 15.0% |
| !!! | CATTTTTAATCATTTTGTTA+AGG | - | chr2_2:55601466-55601485 | None:intergenic | 15.0% |
| !! | CTTAACAAAATGATTAAAAA+TGG | + | chr2_2:55601464-55601483 | Msa0258920:intron | 15.0% |
| !! | AACTGATAAATTACTTTATA+TGG | + | chr2_2:55601535-55601554 | Msa0258920:intron | 15.0% |
| !!! | TAACAAATAAATATTTGTTG+TGG | + | chr2_2:55602600-55602619 | Msa0258920:intron | 15.0% |
| !! | TAAAGTGGAAATTGAAATTA+GGG | - | chr2_2:55599327-55599346 | None:intergenic | 20.0% |
| !! | TTAAAGTGGAAATTGAAATT+AGG | - | chr2_2:55599328-55599347 | None:intergenic | 20.0% |
| !! | AAATGGTAAAGAAATTAAAG+TGG | - | chr2_2:55599342-55599361 | None:intergenic | 20.0% |
| !! | ATACTGTAATTATTATTAGG+AGG | + | chr2_2:55599461-55599480 | Msa0258920:five_prime_UTR | 20.0% |
| !! | AATGATAAATTTCTCTGTTT+AGG | + | chr2_2:55599691-55599710 | Msa0258920:intron | 20.0% |
| !!! | TATTTTTGTATAAGCTATCT+AGG | + | chr2_2:55599954-55599973 | Msa0258920:intron | 20.0% |
| !!! | TTTCATCTGAATATTTTTTC+CGG | + | chr2_2:55600287-55600306 | Msa0258920:intron | 20.0% |
| !!! | TCCAAAAAGAAAGTTTATTT+TGG | + | chr2_2:55600645-55600664 | Msa0258920:intron | 20.0% |
| !! | ACGTGTTAAGAAATTAAAAA+AGG | - | chr2_2:55600742-55600761 | None:intergenic | 20.0% |
| !!! | GGACACTAATTTTTTTTTTA+AGG | - | chr2_2:55600791-55600810 | None:intergenic | 20.0% |
| !!! | CAATAACCATTTTATTCTTA+TGG | + | chr2_2:55601318-55601337 | Msa0258920:intron | 20.0% |
| !!! | TTTTCTTAAAGTAATCAGAA+AGG | - | chr2_2:55601383-55601402 | None:intergenic | 20.0% |
| !!! | AGTAATTTATCAGTTCTAAA+TGG | - | chr2_2:55601530-55601549 | None:intergenic | 20.0% |
| !! | AATTACTTTATATGGTAACT+TGG | + | chr2_2:55601543-55601562 | Msa0258920:intron | 20.0% |
| !!! | ATATAACATTCTATTTTGCT+TGG | + | chr2_2:55602458-55602477 | Msa0258920:intron | 20.0% |
| !!! | TTGTATTATCAGAAACATTT+TGG | + | chr2_2:55602516-55602535 | Msa0258920:intron | 20.0% |
| !! | TCAGTAAAATTAAAATAGCA+TGG | - | chr2_2:55602626-55602645 | None:intergenic | 20.0% |
| !! | TAACTCTATTCTTAACAAAA+TGG | - | chr2_2:55603061-55603080 | None:intergenic | 20.0% |
| ! | ATGAAGTTTGTGATATGTTA+TGG | - | chr2_2:55598994-55599013 | None:intergenic | 25.0% |
| !!! | TTGAAGATGATGGATAATTA+AGG | - | chr2_2:55599296-55599315 | None:intergenic | 25.0% |
| ! | AGTCAAATGAAGTCAAAAAA+TGG | - | chr2_2:55599359-55599378 | None:intergenic | 25.0% |
| !!! | TGGTTATTTGATTTTGAATG+TGG | + | chr2_2:55599427-55599446 | Msa0258920:intron | 25.0% |
| !! | GACTGTTTAGTTGATATTAT+TGG | + | chr2_2:55599713-55599732 | Msa0258920:intron | 25.0% |
| !! | GTTTAGTTGATATTATTGGT+AGG | + | chr2_2:55599717-55599736 | Msa0258920:intron | 25.0% |
| !!! | GTTTTTTGATGAGAAGTTTT+TGG | + | chr2_2:55599770-55599789 | Msa0258920:intron | 25.0% |
| ! | AGAGAAAATCTAAGCTATTA+GGG | - | chr2_2:55599809-55599828 | None:intergenic | 25.0% |
| ! | AAGAGAAAATCTAAGCTATT+AGG | - | chr2_2:55599810-55599829 | None:intergenic | 25.0% |
| !!! | ATGTTATAAGCTGTTTTCAT+AGG | + | chr2_2:55600015-55600034 | Msa0258920:intron | 25.0% |
| ! | TCAAATAAGCCAATCTAAAT+AGG | + | chr2_2:55600080-55600099 | Msa0258920:intron | 25.0% |
| ! | CTTGACAAAATTATTTGCAT+AGG | + | chr2_2:55600320-55600339 | Msa0258920:intron | 25.0% |
| ! | TTTGTTAGTACAAGGAATAT+GGG | - | chr2_2:55600408-55600427 | None:intergenic | 25.0% |
| !! | TTTTGTTAGTACAAGGAATA+TGG | - | chr2_2:55600409-55600428 | None:intergenic | 25.0% |
| !! | AAGACATTTTTGTTAGTACA+AGG | - | chr2_2:55600416-55600435 | None:intergenic | 25.0% |
| !! | TAAGGTTTGAAGTTAACTAT+AGG | - | chr2_2:55600454-55600473 | None:intergenic | 25.0% |
| ! | GTCATTTCTATACTATTCTA+AGG | - | chr2_2:55600472-55600491 | None:intergenic | 25.0% |
| ! | CAAAATACGTTTATCATTCA+AGG | - | chr2_2:55600499-55600518 | None:intergenic | 25.0% |
| ! | ATAACGAAGATTTGTATTCT+TGG | + | chr2_2:55600532-55600551 | Msa0258920:intron | 25.0% |
| ! | TAACGAAGATTTGTATTCTT+GGG | + | chr2_2:55600533-55600552 | Msa0258920:intron | 25.0% |
| !!! | ACAATGATGGATTTAAAGTA+AGG | + | chr2_2:55600575-55600594 | Msa0258920:intron | 25.0% |
| !!! | CAATGATGGATTTAAAGTAA+GGG | + | chr2_2:55600576-55600595 | Msa0258920:intron | 25.0% |
| !! | GCCAAAATAAACTTTCTTTT+TGG | - | chr2_2:55600649-55600668 | None:intergenic | 25.0% |
| !!! | TTTAGAGTCTTGTAACTTTT+AGG | - | chr2_2:55600831-55600850 | None:intergenic | 25.0% |
| ! | TTCAAAATATCACATAATGC+AGG | - | chr2_2:55600880-55600899 | None:intergenic | 25.0% |
| !!! | TGATATTTTGAACAGATCAT+TGG | + | chr2_2:55600888-55600907 | Msa0258920:intron | 25.0% |
| ! | CTTGTTCCATAAGAATAAAA+TGG | - | chr2_2:55601327-55601346 | None:intergenic | 25.0% |
| ! | ATACCAAAAAGGCTAAAAAA+AGG | - | chr2_2:55601590-55601609 | None:intergenic | 25.0% |
| !! | TATTCATTGGCATTTTATTG+AGG | + | chr2_2:55601607-55601626 | Msa0258920:intron | 25.0% |
| !!! | ATTATCTCTGTTTTTATGCT+TGG | - | chr2_2:55602036-55602055 | None:intergenic | 25.0% |
| ! | CATAAAAACAGAGATAATAG+AGG | + | chr2_2:55602038-55602057 | Msa0258920:intron | 25.0% |
| !! | TTTTTCTCTATTTTGTTGCT+TGG | - | chr2_2:55602077-55602096 | None:intergenic | 25.0% |
| ! | AACAAAATAGAGAAAAACAG+AGG | + | chr2_2:55602080-55602099 | Msa0258920:intron | 25.0% |
| !! | ATCAAATCTGTGAATCTTTT+GGG | - | chr2_2:55602266-55602285 | None:intergenic | 25.0% |
| ! | AATGTGTTTACTTCTCATAT+CGG | + | chr2_2:55602350-55602369 | Msa0258920:intron | 25.0% |
| ! | CTGAAATTCTCTTTAAATGA+TGG | + | chr2_2:55602642-55602661 | Msa0258920:intron | 25.0% |
| ! | TGTTTCTTAATTCCTTCAAA+AGG | + | chr2_2:55602895-55602914 | Msa0258920:three_prime_UTR | 25.0% |
| !!! | CAGCATATTTTGATATTTGT+CGG | - | chr2_2:55603036-55603055 | None:intergenic | 25.0% |
| ! | GACAAATATCAAAATATGCT+GGG | + | chr2_2:55603035-55603054 | Msa0258920:three_prime_UTR | 25.0% |
| ! | AAGAAGTTTGTGAAGAAAAT+GGG | + | chr2_2:55603092-55603111 | Msa0258920:three_prime_UTR | 25.0% |
| AAATTCATTATCGATCTGTG+AGG | - | chr2_2:55599215-55599234 | None:intergenic | 30.0% | |
| AATTGAAAGGAGAAGACTTA+CGG | - | chr2_2:55599261-55599280 | None:intergenic | 30.0% | |
| GAAATGAGAGTGAAATTGAA+AGG | - | chr2_2:55599274-55599293 | None:intergenic | 30.0% | |
| GGTTAAGTAATTGAAGATGA+TGG | - | chr2_2:55599306-55599325 | None:intergenic | 30.0% | |
| TCTTTGTAAGTTGTAGCTTA+TGG | + | chr2_2:55599407-55599426 | Msa0258920:intron | 30.0% | |
| !! | TTTGATTTTGAATGTGGAAC+AGG | + | chr2_2:55599433-55599452 | Msa0258920:intron | 30.0% |
| AACAAGAAAACAAGCAACAT+AGG | - | chr2_2:55599500-55599519 | None:intergenic | 30.0% | |
| TGAAGAAACTGTTAAAGAGA+AGG | + | chr2_2:55599625-55599644 | Msa0258920:CDS | 30.0% | |
| !!! | TATTGGTAGGTTTAGTTTTG+CGG | + | chr2_2:55599730-55599749 | Msa0258920:intron | 30.0% |
| GAGCGTATAACAATAACAAT+AGG | - | chr2_2:55599834-55599853 | None:intergenic | 30.0% | |
| TTATTGTTATACGCTCTGTT+TGG | + | chr2_2:55599838-55599857 | Msa0258920:intron | 30.0% | |
| !! | TAAGTTTTGTGAGACTGTTA+GGG | - | chr2_2:55600045-55600064 | None:intergenic | 30.0% |
| !! | ATAAGTTTTGTGAGACTGTT+AGG | - | chr2_2:55600046-55600065 | None:intergenic | 30.0% |
| GCTTATTTGAGCTTATATAC+TGG | - | chr2_2:55600070-55600089 | None:intergenic | 30.0% | |
| ACGTAGTCATACAATACATA+GGG | - | chr2_2:55600106-55600125 | None:intergenic | 30.0% | |
| TACGTAGTCATACAATACAT+AGG | - | chr2_2:55600107-55600126 | None:intergenic | 30.0% | |
| ATGTATTGTATGACTACGTA+AGG | + | chr2_2:55600107-55600126 | Msa0258920:intron | 30.0% | |
| TGTATTGTATGACTACGTAA+GGG | + | chr2_2:55600108-55600127 | Msa0258920:intron | 30.0% | |
| ATGGCAATATGACATAGTTT+GGG | + | chr2_2:55600153-55600172 | Msa0258920:intron | 30.0% | |
| ! | TTTGTCAAGCAATTGTTTTC+CGG | - | chr2_2:55600309-55600328 | None:intergenic | 30.0% |
| TTGTTAGTACAAGGAATATG+GGG | - | chr2_2:55600407-55600426 | None:intergenic | 30.0% | |
| CAAATCTTCGTTATGAAGAA+GGG | - | chr2_2:55600526-55600545 | None:intergenic | 30.0% | |
| ACAAATCTTCGTTATGAAGA+AGG | - | chr2_2:55600527-55600546 | None:intergenic | 30.0% | |
| ! | TTCTTTTTGGACTTCTTAAC+AGG | - | chr2_2:55600636-55600655 | None:intergenic | 30.0% |
| !!! | AAGAAAGTTTATTTTGGCAG+TGG | + | chr2_2:55600651-55600670 | Msa0258920:intron | 30.0% |
| !! | AGTCAATTTCTAAAGTTCCA+AGG | - | chr2_2:55600688-55600707 | None:intergenic | 30.0% |
| !! | TATTTTGAACAGATCATTGG+TGG | + | chr2_2:55600891-55600910 | Msa0258920:intron | 30.0% |
| AAAAGATCACACAAAAAGAG+AGG | - | chr2_2:55600949-55600968 | None:intergenic | 30.0% | |
| ! | TCTCTTTTTGTGTGATCTTT+TGG | + | chr2_2:55600948-55600967 | Msa0258920:intron | 30.0% |
| ! | CTCTTTTTGTGTGATCTTTT+GGG | + | chr2_2:55600949-55600968 | Msa0258920:intron | 30.0% |
| ! | TGTTTGGTATTCTCTTTTCA+AGG | + | chr2_2:55600977-55600996 | Msa0258920:intron | 30.0% |
| !!! | TTTTCAGAGCTCTAGTTTTA+GGG | - | chr2_2:55601035-55601054 | None:intergenic | 30.0% |
| TGAAATCAAGATGAGTGATT+TGG | + | chr2_2:55601102-55601121 | Msa0258920:intron | 30.0% | |
| ! | TGATTTGGAATTAACAGTGT+TGG | + | chr2_2:55601117-55601136 | Msa0258920:intron | 30.0% |
| TGGAATTTGGAAGCTATATA+TGG | + | chr2_2:55601140-55601159 | Msa0258920:intron | 30.0% | |
| ATATCAATAGAGACATACTC+CGG | + | chr2_2:55601172-55601191 | Msa0258920:intron | 30.0% | |
| ! | TTGTTGCTTATATTCGAAAC+CGG | - | chr2_2:55601194-55601213 | None:intergenic | 30.0% |
| AGCAACAAAAAAGTCATGTT+TGG | + | chr2_2:55601206-55601225 | Msa0258920:intron | 30.0% | |
| AACAAAAAAGTCATGTTTGG+TGG | + | chr2_2:55601209-55601228 | Msa0258920:intron | 30.0% | |
| ATATTACCAAAGTGTGTGAT+TGG | + | chr2_2:55601418-55601437 | Msa0258920:intron | 30.0% | |
| TATTACCAAAGTGTGTGATT+GGG | + | chr2_2:55601419-55601438 | Msa0258920:intron | 30.0% | |
| !! | TGATTGGGTTTTAATCTGAT+TGG | + | chr2_2:55601434-55601453 | Msa0258920:intron | 30.0% |
| !! | AGTTCTAAATGGCTAAGAAT+TGG | - | chr2_2:55601519-55601538 | None:intergenic | 30.0% |
| !!! | TTGCCTTTTTTTAGCCTTTT+TGG | + | chr2_2:55601584-55601603 | Msa0258920:intron | 30.0% |
| !! | TTAGCCTTTTTGGTATTCAT+TGG | + | chr2_2:55601594-55601613 | Msa0258920:intron | 30.0% |
| AATGCCAATGAATACCAAAA+AGG | - | chr2_2:55601601-55601620 | None:intergenic | 30.0% | |
| TGTTTGTTTCCTTCACATTT+CGG | + | chr2_2:55601703-55601722 | Msa0258920:intron | 30.0% | |
| TAAAATTTGCCGAAATGTGA+AGG | - | chr2_2:55601715-55601734 | None:intergenic | 30.0% | |
| !! | GGTGAGAAAATTCTAGAATT+AGG | - | chr2_2:55601790-55601809 | None:intergenic | 30.0% |
| TGAAAATACCCACTCAAAAT+GGG | - | chr2_2:55601841-55601860 | None:intergenic | 30.0% | |
| TTGAAAATACCCACTCAAAA+TGG | - | chr2_2:55601842-55601861 | None:intergenic | 30.0% | |
| TCGTGTTTACTTTCTTTAAC+CGG | - | chr2_2:55601924-55601943 | None:intergenic | 30.0% | |
| TTGATAGAGTTGAGTGAAAT+AGG | + | chr2_2:55601982-55602001 | Msa0258920:intron | 30.0% | |
| AGAAAATAGACGAAAAACAG+AGG | + | chr2_2:55602008-55602027 | Msa0258920:intron | 30.0% | |
| AGATAATAGAGGAAAAACAG+AGG | + | chr2_2:55602049-55602068 | Msa0258920:intron | 30.0% | |
| ! | CATCAAATCTGTGAATCTTT+TGG | - | chr2_2:55602267-55602286 | None:intergenic | 30.0% |
| TATTAATATGAGAAGGGCAA+TGG | - | chr2_2:55602395-55602414 | None:intergenic | 30.0% | |
| !!! | TCTGCAGATTATTTTAGTAC+AGG | + | chr2_2:55602670-55602689 | Msa0258920:intron | 30.0% |
| ! | CTTACAACAATTCCTTTTGA+AGG | - | chr2_2:55602910-55602929 | None:intergenic | 30.0% |
| CGACAAATATCAAAATATGC+TGG | + | chr2_2:55603034-55603053 | Msa0258920:three_prime_UTR | 30.0% | |
| CAAGAAGTTTGTGAAGAAAA+TGG | + | chr2_2:55603091-55603110 | Msa0258920:three_prime_UTR | 30.0% | |
| GAGGAGGAAAGATATAGAAA+CGG | - | chr2_2:55599129-55599148 | None:intergenic | 35.0% | |
| TATTAGGAGGAATCATGTCA+AGG | + | chr2_2:55599474-55599493 | Msa0258920:exon | 35.0% | |
| TACATAGGGCCTATTTAGAT+TGG | - | chr2_2:55600092-55600111 | None:intergenic | 35.0% | |
| CATGGCAATATGACATAGTT+TGG | + | chr2_2:55600152-55600171 | Msa0258920:intron | 35.0% | |
| CATAAATCTCATCTTGCACA+TGG | + | chr2_2:55600216-55600235 | Msa0258920:intron | 35.0% | |
| CAGTATAAATAACGCTTGAG+TGG | - | chr2_2:55600262-55600281 | None:intergenic | 35.0% | |
| !!! | TATGGGGTTTTGTTGCTAAT+GGG | - | chr2_2:55600391-55600410 | None:intergenic | 35.0% |
| !!! | ATATGGGGTTTTGTTGCTAA+TGG | - | chr2_2:55600392-55600411 | None:intergenic | 35.0% |
| ! | GGTTTGAAGTTAACTATAGG+TGG | - | chr2_2:55600451-55600470 | None:intergenic | 35.0% |
| TTGTAATGCCACAAAAGTGA+AGG | - | chr2_2:55600559-55600578 | None:intergenic | 35.0% | |
| ! | CTTTTGTGGCATTACAATGA+TGG | + | chr2_2:55600562-55600581 | Msa0258920:intron | 35.0% |
| CATGCTAGCAAGTAACTTAA+GGG | - | chr2_2:55600766-55600785 | None:intergenic | 35.0% | |
| ! | CTTAAGTTACTTGCTAGCAT+GGG | + | chr2_2:55600765-55600784 | Msa0258920:intron | 35.0% |
| TATCACATAATGCAGGCTTA+GGG | - | chr2_2:55600873-55600892 | None:intergenic | 35.0% | |
| ATATCACATAATGCAGGCTT+AGG | - | chr2_2:55600874-55600893 | None:intergenic | 35.0% | |
| ! | TTTTTGTGTGATCTTTTGGG+AGG | + | chr2_2:55600952-55600971 | Msa0258920:intron | 35.0% |
| !! | TTTTGTGTGATCTTTTGGGA+GGG | + | chr2_2:55600953-55600972 | Msa0258920:intron | 35.0% |
| !!! | TTTCAGAGCTCTAGTTTTAG+GGG | - | chr2_2:55601034-55601053 | None:intergenic | 35.0% |
| !!! | GTTTTCAGAGCTCTAGTTTT+AGG | - | chr2_2:55601036-55601055 | None:intergenic | 35.0% |
| ! | TTTGGAATTAACAGTGTTGG+TGG | + | chr2_2:55601120-55601139 | Msa0258920:intron | 35.0% |
| !! | TTAACAGTGTTGGTGGAATT+TGG | + | chr2_2:55601127-55601146 | Msa0258920:intron | 35.0% |
| TTTGGAAGCTATATATGGCT+TGG | + | chr2_2:55601145-55601164 | Msa0258920:intron | 35.0% | |
| TAAAACCCAATCACACACTT+TGG | - | chr2_2:55601427-55601446 | None:intergenic | 35.0% | |
| AGAATTGGTAAGATGTGCAA+AGG | - | chr2_2:55601504-55601523 | None:intergenic | 35.0% | |
| ! | TAACTTGGAGCTTTTTGCTT+GGG | + | chr2_2:55601558-55601577 | Msa0258920:intron | 35.0% |
| ATTAGGAAATGAGAGAGAGA+TGG | - | chr2_2:55601773-55601792 | None:intergenic | 35.0% | |
| GGTTAAAGAAAGTAAACACG+AGG | + | chr2_2:55601923-55601942 | Msa0258920:intron | 35.0% | |
| ATGTTAGATCCTCAGTAGTT+AGG | - | chr2_2:55602232-55602251 | None:intergenic | 35.0% | |
| !! | AATCTGTGAATCTTTTGGGT+GGG | - | chr2_2:55602262-55602281 | None:intergenic | 35.0% |
| ! | AAATCTGTGAATCTTTTGGG+TGG | - | chr2_2:55602263-55602282 | None:intergenic | 35.0% |
| TTGTGTTTCCTTGCACAAAT+CGG | - | chr2_2:55602297-55602316 | None:intergenic | 35.0% | |
| GTTTACTTCTCATATCGGTA+AGG | + | chr2_2:55602355-55602374 | Msa0258920:intron | 35.0% | |
| ! | GAATATTACTAGTGCTACTC+TGG | - | chr2_2:55602437-55602456 | None:intergenic | 35.0% |
| GAAGACTTAATGAACTTGTG+CGG | + | chr2_2:55602705-55602724 | Msa0258920:CDS | 35.0% | |
| GGAACTATAAATAGCACTGT+AGG | + | chr2_2:55602767-55602786 | Msa0258920:CDS | 35.0% | |
| ! | TGAGCGACAACAAATTTTAG+AGG | + | chr2_2:55602817-55602836 | Msa0258920:CDS | 35.0% |
| AGTTTGTGAAGAAAATGGGT+TGG | + | chr2_2:55603096-55603115 | Msa0258920:three_prime_UTR | 35.0% | |
| ATCGATCTGTGAGGAGTTTA+GGG | - | chr2_2:55599206-55599225 | None:intergenic | 40.0% | |
| TATCGATCTGTGAGGAGTTT+AGG | - | chr2_2:55599207-55599226 | None:intergenic | 40.0% | |
| !! | CTTACGGAAGAGTGTTATTG+AGG | - | chr2_2:55599245-55599264 | None:intergenic | 40.0% |
| TAATCACTTCGCAATTCGAG+TGG | + | chr2_2:55599531-55599550 | Msa0258920:CDS | 40.0% | |
| CATTGACAAGATTGTGCACA+TGG | + | chr2_2:55600134-55600153 | Msa0258920:intron | 40.0% | |
| CTTCTTAACAGGTTCCATCA+GGG | - | chr2_2:55600625-55600644 | None:intergenic | 40.0% | |
| ACTTCTTAACAGGTTCCATC+AGG | - | chr2_2:55600626-55600645 | None:intergenic | 40.0% | |
| CCATGCTAGCAAGTAACTTA+AGG | - | chr2_2:55600767-55600786 | None:intergenic | 40.0% | |
| ! | CCTTAAGTTACTTGCTAGCA+TGG | + | chr2_2:55600764-55600783 | Msa0258920:intron | 40.0% |
| ! | AAGAGAGGCAGCTTTTAATG+TGG | - | chr2_2:55600934-55600953 | None:intergenic | 40.0% |
| !! | TTTGTGTGATCTTTTGGGAG+GGG | + | chr2_2:55600954-55600973 | Msa0258920:intron | 40.0% |
| CCAGACTCATTGACAATCTT+AGG | - | chr2_2:55601067-55601086 | None:intergenic | 40.0% | |
| CCTAAGATTGTCAATGAGTC+TGG | + | chr2_2:55601064-55601083 | Msa0258920:intron | 40.0% | |
| TATGGAACAAGTTCCCATGA+TGG | + | chr2_2:55601336-55601355 | Msa0258920:intron | 40.0% | |
| ATGGAACAAGTTCCCATGAT+GGG | + | chr2_2:55601337-55601356 | Msa0258920:intron | 40.0% | |
| TTCCTCAAATTGCCCATCAT+GGG | - | chr2_2:55601352-55601371 | None:intergenic | 40.0% | |
| ATTCCTCAAATTGCCCATCA+TGG | - | chr2_2:55601353-55601372 | None:intergenic | 40.0% | |
| ! | GTAACTTGGAGCTTTTTGCT+TGG | + | chr2_2:55601557-55601576 | Msa0258920:intron | 40.0% |
| ! | AACTTGGAGCTTTTTGCTTG+GGG | + | chr2_2:55601559-55601578 | Msa0258920:intron | 40.0% |
| TGGCTGAAAATAAGAGAGAG+CGG | - | chr2_2:55601753-55601772 | None:intergenic | 40.0% | |
| TAACAGAATGGGAGAGTAGT+GGG | - | chr2_2:55601811-55601830 | None:intergenic | 40.0% | |
| ! | ACTACATTGGTTAGGAGGAT+AGG | - | chr2_2:55601870-55601889 | None:intergenic | 40.0% |
| ACGTAACACAGTTCGTAAGT+AGG | + | chr2_2:55601947-55601966 | Msa0258920:intron | 40.0% | |
| ACACAGTTCGTAAGTAGGAT+TGG | + | chr2_2:55601952-55601971 | Msa0258920:intron | 40.0% | |
| ! | AGTTCGTAAGTAGGATTGGT+AGG | + | chr2_2:55601956-55601975 | Msa0258920:intron | 40.0% |
| GAGAAAAACAGAGGAAACAG+AGG | + | chr2_2:55602089-55602108 | Msa0258920:intron | 40.0% | |
| AGGAAACTGGCAAAAAACAG+AGG | + | chr2_2:55602109-55602128 | Msa0258920:intron | 40.0% | |
| GAAACAGAGCAAAAACGAAC+CGG | + | chr2_2:55602131-55602150 | Msa0258920:intron | 40.0% | |
| !! | ATCTGTGAATCTTTTGGGTG+GGG | - | chr2_2:55602261-55602280 | None:intergenic | 40.0% |
| !! | GAATTTCACCGATTTGTGCA+AGG | + | chr2_2:55602286-55602305 | Msa0258920:intron | 40.0% |
| ATATGAGAAGGGCAATGGAT+TGG | - | chr2_2:55602390-55602409 | None:intergenic | 40.0% | |
| GCTTCATTAACATGCTGCAA+AGG | - | chr2_2:55602849-55602868 | None:intergenic | 40.0% | |
| AATGATAAACGCGGTGGTTG+AGG | - | chr2_2:55599093-55599112 | None:intergenic | 45.0% | |
| TGACGTGGCAATGATAAACG+CGG | - | chr2_2:55599102-55599121 | None:intergenic | 45.0% | |
| TATAGAAACGGAGAGTGACG+TGG | - | chr2_2:55599117-55599136 | None:intergenic | 45.0% | |
| GAGAAAGTAAGTTTGGGAGG+AGG | - | chr2_2:55599145-55599164 | None:intergenic | 45.0% | |
| GGTGAGAAAGTAAGTTTGGG+AGG | - | chr2_2:55599148-55599167 | None:intergenic | 45.0% | |
| GGGGGTGAGAAAGTAAGTTT+GGG | - | chr2_2:55599151-55599170 | None:intergenic | 45.0% | |
| TTCCTCAGAGTGTGAGGTTA+GGG | - | chr2_2:55599172-55599191 | None:intergenic | 45.0% | |
| TTTCCTCAGAGTGTGAGGTT+AGG | - | chr2_2:55599173-55599192 | None:intergenic | 45.0% | |
| GACTCAACATCAGACACAAG+TGG | - | chr2_2:55599563-55599582 | None:intergenic | 45.0% | |
| TTGCACATGGCTTATGTCTC+AGG | + | chr2_2:55600229-55600248 | Msa0258920:intron | 45.0% | |
| TGCACATGGCTTATGTCTCA+GGG | + | chr2_2:55600230-55600249 | Msa0258920:intron | 45.0% | |
| ACCATCAAACTCACTGCCTA+GGG | + | chr2_2:55600357-55600376 | Msa0258920:intron | 45.0% | |
| !! | CTAATGGGTTTCAGTTCCCT+AGG | - | chr2_2:55600376-55600395 | None:intergenic | 45.0% |
| !! | TTCTTGGGCCTTCACTTTTG+TGG | + | chr2_2:55600548-55600567 | Msa0258920:intron | 45.0% |
| CAGTGGTGCATTTAACACCT+TGG | + | chr2_2:55600668-55600687 | Msa0258920:intron | 45.0% | |
| TAGGACAGCGTTTGAAAGCT+TGG | - | chr2_2:55600812-55600831 | None:intergenic | 45.0% | |
| !! | TTCCCATGATGGGCAATTTG+AGG | + | chr2_2:55601347-55601366 | Msa0258920:intron | 45.0% |
| GGCTGAAAATAAGAGAGAGC+GGG | - | chr2_2:55601752-55601771 | None:intergenic | 45.0% | |
| CTAACAGAATGGGAGAGTAG+TGG | - | chr2_2:55601812-55601831 | None:intergenic | 45.0% | |
| TGGGCTGCAACTAACAGAAT+GGG | - | chr2_2:55601822-55601841 | None:intergenic | 45.0% | |
| ! | ATGGGCTGCAACTAACAGAA+TGG | - | chr2_2:55601823-55601842 | None:intergenic | 45.0% |
| ! | TAGTTGCAGCCCATTTTGAG+TGG | + | chr2_2:55601829-55601848 | Msa0258920:intron | 45.0% |
| !! | AGTTGCAGCCCATTTTGAGT+GGG | + | chr2_2:55601830-55601849 | Msa0258920:intron | 45.0% |
| TCCTCCTAACCAATGTAGTC+AGG | + | chr2_2:55601871-55601890 | Msa0258920:intron | 45.0% | |
| ! | TCCTGACTACATTGGTTAGG+AGG | - | chr2_2:55601875-55601894 | None:intergenic | 45.0% |
| ! | CGATCCTGACTACATTGGTT+AGG | - | chr2_2:55601878-55601897 | None:intergenic | 45.0% |
| GATCTCGATCCTGACTACAT+TGG | - | chr2_2:55601883-55601902 | None:intergenic | 45.0% | |
| ATCGAGATCCTACGTAGGAT+CGG | + | chr2_2:55601894-55601913 | Msa0258920:intron | 45.0% | |
| ACAGAGGAAACAGAGGAAAC+TGG | + | chr2_2:55602096-55602115 | Msa0258920:intron | 45.0% | |
| TAGTTAGGAGCAGTGTAGTC+AGG | - | chr2_2:55602217-55602236 | None:intergenic | 45.0% | |
| TACACTGCTCCTAACTACTG+AGG | + | chr2_2:55602220-55602239 | Msa0258920:intron | 45.0% | |
| !! | TCTGTGAATCTTTTGGGTGG+GGG | - | chr2_2:55602260-55602279 | None:intergenic | 45.0% |
| ! | GTGCTACTCTGGAAAGAGTA+TGG | - | chr2_2:55602426-55602445 | None:intergenic | 45.0% |
| TCAAGAATCCGCTCAGTTAG+AGG | - | chr2_2:55602794-55602813 | None:intergenic | 45.0% | |
| !!! | AAAATAAAATCTAATTTTTA+AGG | - | chr2_2:55601297-55601316 | None:intergenic | 5.0% |
| !!! | TATTTATTTGTTATAAAATT+TGG | - | chr2_2:55602593-55602612 | None:intergenic | 5.0% |
| ! | AGCAGAGTAACGCGTTTTCG+AGG | - | chr2_2:55599020-55599039 | None:intergenic | 50.0% |
| AAAACGCGTTACTCTGCTGC+AGG | + | chr2_2:55599022-55599041 | Msa0258920:five_prime_UTR | 50.0% | |
| TTGGGAAGTGAAAGCGACGA+CGG | - | chr2_2:55599066-55599085 | None:intergenic | 50.0% | |
| ATAAACGCGGTGGTTGAGGT+CGG | - | chr2_2:55599089-55599108 | None:intergenic | 50.0% | |
| GGGGGGTGAGAAAGTAAGTT+TGG | - | chr2_2:55599152-55599171 | None:intergenic | 50.0% | |
| TCCTCAGAGTGTGAGGTTAG+GGG | - | chr2_2:55599171-55599190 | None:intergenic | 50.0% | |
| ! | ACCTCACACTCTGAGGAAAG+AGG | + | chr2_2:55599174-55599193 | Msa0258920:five_prime_UTR | 50.0% |
| ! | CCTCACACTCTGAGGAAAGA+GGG | + | chr2_2:55599175-55599194 | Msa0258920:five_prime_UTR | 50.0% |
| ! | CTCACACTCTGAGGAAAGAG+GGG | + | chr2_2:55599176-55599195 | Msa0258920:five_prime_UTR | 50.0% |
| ! | TCACACTCTGAGGAAAGAGG+GGG | + | chr2_2:55599177-55599196 | Msa0258920:five_prime_UTR | 50.0% |
| ACATGGCTTATGTCTCAGGG+TGG | + | chr2_2:55600233-55600252 | Msa0258920:intron | 50.0% | |
| CACCATCAAACTCACTGCCT+AGG | + | chr2_2:55600356-55600375 | Msa0258920:intron | 50.0% | |
| TCCCTAGGCAGTGAGTTTGA+TGG | - | chr2_2:55600361-55600380 | None:intergenic | 50.0% | |
| !!! | GATCTTTTGGGAGGGGTGTT+TGG | + | chr2_2:55600961-55600980 | Msa0258920:intron | 50.0% |
| !!! | CAGAGCTCTAGTTTTAGGGG+AGG | - | chr2_2:55601031-55601050 | None:intergenic | 50.0% |
| TCAGGATCGAGATCCTACGT+AGG | + | chr2_2:55601889-55601908 | Msa0258920:intron | 50.0% | |
| AGATCCTACGTAGGATCGGT+CGG | + | chr2_2:55601898-55601917 | Msa0258920:intron | 50.0% | |
| ACCGGAGTAAAGTCGAAGCA+CGG | + | chr2_2:55602149-55602168 | Msa0258920:intron | 50.0% | |
| ACCGTGCTTCGACTTTACTC+CGG | - | chr2_2:55602153-55602172 | None:intergenic | 50.0% | |
| !! | TGTGAATCTTTTGGGTGGGG+GGG | - | chr2_2:55602258-55602277 | None:intergenic | 50.0% |
| !! | CTGTGAATCTTTTGGGTGGG+GGG | - | chr2_2:55602259-55602278 | None:intergenic | 50.0% |
| TGAACTTGTGCGGCATCTTC+AGG | + | chr2_2:55602715-55602734 | Msa0258920:CDS | 50.0% | |
| GAACAACTGCAGCAGTGCAA+AGG | + | chr2_2:55602737-55602756 | Msa0258920:CDS | 50.0% | |
| CAGCAGTGCAAAGGAAGCAA+TGG | + | chr2_2:55602746-55602765 | Msa0258920:CDS | 50.0% | |
| CTGTAGGTCCTCTAACTGAG+CGG | + | chr2_2:55602783-55602802 | Msa0258920:CDS | 50.0% | |
| CGTGGCAATGATAAACGCGG+TGG | - | chr2_2:55599099-55599118 | None:intergenic | 55.0% | |
| CTCAGAGTGTGAGGTTAGGG+GGG | - | chr2_2:55599169-55599188 | None:intergenic | 55.0% | |
| CCTCAGAGTGTGAGGTTAGG+GGG | - | chr2_2:55599170-55599189 | None:intergenic | 55.0% | |
| CCCTCTTTCCTCAGAGTGTG+AGG | - | chr2_2:55599178-55599197 | None:intergenic | 55.0% | |
| ! | CAGGTTCCATCAGGGCACTA+GGG | - | chr2_2:55600617-55600636 | None:intergenic | 55.0% |
| ! | ACAGGTTCCATCAGGGCACT+AGG | - | chr2_2:55600618-55600637 | None:intergenic | 55.0% |
| GTAAAGTCGAAGCACGGTCG+AGG | + | chr2_2:55602155-55602174 | Msa0258920:intron | 55.0% | |
| GTGTAGTCAGGATCGAGTGC+TGG | - | chr2_2:55602205-55602224 | None:intergenic | 55.0% | |
| CCCCCTAACCTCACACTCTG+AGG | + | chr2_2:55599167-55599186 | Msa0258920:five_prime_UTR | 60.0% | |
| CAAGTGCCCTAGTGCCCTGA+TGG | + | chr2_2:55600608-55600627 | Msa0258920:intron | 60.0% | |
| CGCGGTGGTTGAGGTCGGTT+GGG | - | chr2_2:55599084-55599103 | None:intergenic | 65.0% | |
| ACGCGGTGGTTGAGGTCGGT+TGG | - | chr2_2:55599085-55599104 | None:intergenic | 65.0% | |
| CCTACGTAGGATCGGTCGGC+CGG | + | chr2_2:55601902-55601921 | Msa0258920:intron | 65.0% | |
| GTCGAAGCACGGTCGAGGTG+CGG | + | chr2_2:55602160-55602179 | Msa0258920:intron | 65.0% | |
| CCGGCCGACCGATCCTACGT+AGG | - | chr2_2:55601905-55601924 | None:intergenic | 70.0% | |
| GAAGCACGGTCGAGGTGCGG+TGG | + | chr2_2:55602163-55602182 | Msa0258920:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 55598978 | 55603120 | 55598978 | ID=Msa0258920;Name=Msa0258920 |
| chr2_2 | mRNA | 55598978 | 55603120 | 55598978 | ID=Msa0258920-mRNA-1;Parent=Msa0258920;Name=Msa0258920-mRNA-1;_AED=0.35;_eAED=0.35;_QI=315|1|1|1|0.5|0.33|3|276|108 |
| chr2_2 | exon | 55598978 | 55599259 | 55598978 | ID=Msa0258920-mRNA-1:exon:16811;Parent=Msa0258920-mRNA-1 |
| chr2_2 | exon | 55599455 | 55599646 | 55599455 | ID=Msa0258920-mRNA-1:exon:16812;Parent=Msa0258920-mRNA-1 |
| chr2_2 | exon | 55602677 | 55603120 | 55602677 | ID=Msa0258920-mRNA-1:exon:16813;Parent=Msa0258920-mRNA-1 |
| chr2_2 | five_prime_UTR | 55598978 | 55599259 | 55598978 | ID=Msa0258920-mRNA-1:five_prime_utr;Parent=Msa0258920-mRNA-1 |
| chr2_2 | five_prime_UTR | 55599455 | 55599487 | 55599455 | ID=Msa0258920-mRNA-1:five_prime_utr;Parent=Msa0258920-mRNA-1 |
| chr2_2 | CDS | 55599488 | 55599646 | 55599488 | ID=Msa0258920-mRNA-1:cds;Parent=Msa0258920-mRNA-1 |
| chr2_2 | CDS | 55602677 | 55602844 | 55602677 | ID=Msa0258920-mRNA-1:cds;Parent=Msa0258920-mRNA-1 |
| chr2_2 | three_prime_UTR | 55602845 | 55603120 | 55602845 | ID=Msa0258920-mRNA-1:three_prime_utr;Parent=Msa0258920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
