AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0692080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0692080 MtrunA17_Chr4g0042091 95.595 454 2 3 1 453 1 437 0.0 867
Msa0692080 MtrunA17_Chr2g0280501 43.187 433 185 10 24 452 1 376 6.05e-99 301
Msa0692080 MtrunA17_Chr1g0156521 37.963 432 194 11 25 450 35 398 1.74e-72 234
Msa0692080 MtrunA17_Chr3g0114991 51.837 245 98 8 216 450 214 448 3.97e-70 229
Msa0692080 MtrunA17_Chr3g0104431 44.583 240 116 8 221 450 154 386 8.32e-55 187
Msa0692080 MtrunA17_Chr8g0376191 56.805 169 69 3 284 452 1 165 3.45e-53 176
Msa0692080 MtrunA17_Chr2g0280521 60.331 121 44 2 248 366 8 126 6.40e-39 137
Msa0692080 MtrunA17_Chr5g0399041 34.375 224 94 7 243 452 105 289 9.60e-30 117
Msa0692080 MtrunA17_Chr4g0056461 35.238 210 100 6 246 452 98 274 2.83e-27 110
Msa0692080 MtrunA17_Chr5g0445321 30.412 194 121 5 259 450 1 182 1.89e-20 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0692080 AT5G54630.1 69.913 462 96 12 24 452 20 471 0.0 590
Msa0692080 AT4G27240.1 63.839 448 124 7 9 452 17 430 0.0 532
Msa0692080 AT4G27240.2 62.381 420 120 7 9 424 17 402 7.60e-168 479
Msa0692080 AT1G11490.2 39.955 443 173 16 24 452 1 364 6.20e-78 247
Msa0692080 AT1G11490.1 39.955 443 173 16 24 452 1 364 6.20e-78 247
Msa0692080 AT1G75710.1 46.875 256 109 5 221 452 206 458 1.52e-61 207
Msa0692080 AT2G29660.1 41.634 257 125 7 213 450 120 370 2.39e-48 170
Msa0692080 AT4G22560.1 38.605 215 86 9 240 450 89 261 1.27e-28 114
Msa0692080 AT1G62520.1 38.863 211 96 7 244 452 100 279 5.29e-28 112
Msa0692080 AT4G12450.1 32.727 220 99 7 243 452 96 276 7.18e-23 98.2

Find 106 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATAACTTCATGAGTTAT+TGG 0.157846 4_4:-60416243 None:intergenic
AAAATGATGGTACAAATTTA+TGG 0.233151 4_4:+60418114 Msa0692080:three_prime_UTR
TCAAACTGGATTTGATTCTT+TGG 0.236240 4_4:+60417579 Msa0692080:CDS
CTTGGCAGTTACTGAACTTT+TGG 0.259869 4_4:+60417057 Msa0692080:intron
GTTTGGATTCACGGTGAATT+TGG 0.266400 4_4:+60417727 Msa0692080:three_prime_UTR
AGAAGAAGAAGAATCATTAA+AGG 0.271933 4_4:+60415960 Msa0692080:CDS
AAAATTACAAATGTATGAAT+AGG 0.295551 4_4:-60418003 None:intergenic
AAATTACAAATGTATGAATA+GGG 0.307168 4_4:-60418002 None:intergenic
GACACCTAGGATGTTTCTTC+TGG 0.309460 4_4:-60417249 None:intergenic
AAGTCACTTGTGCTTGTTCA+TGG 0.370609 4_4:+60417958 Msa0692080:three_prime_UTR
GTCACAACTAGAAATAAATA+TGG 0.370687 4_4:+60418082 Msa0692080:three_prime_UTR
GGAAATCTAGTTCATGTATA+AGG 0.372976 4_4:+60415906 Msa0692080:exon
GAACAAGCAAATGAGACAAA+AGG 0.375170 4_4:-60415730 None:intergenic
GGGTTAAAGTAATGCATTGT+AGG 0.377644 4_4:-60416414 None:intergenic
ACCACAGTAGCTTGTTCTCT+TGG 0.380190 4_4:+60417307 Msa0692080:CDS
TCTCTTGAAACAGATTCTAA+TGG 0.386384 4_4:+60416540 Msa0692080:CDS
AATCTAAAAGATGTTATTCA+TGG 0.389198 4_4:+60416150 Msa0692080:CDS
GGTAAGTTCGACAAAATTAC+AGG 0.400154 4_4:-60417811 None:intergenic
GCTTGTTCTCTTGGTCTCAA+TGG 0.401559 4_4:+60417316 Msa0692080:CDS
AGAAGAGCACAGAATGAGTT+AGG 0.403969 4_4:-60415759 None:intergenic
AAAATATTTACCAGCATGCT+TGG 0.405089 4_4:-60416637 None:intergenic
AAGGAGTTGAAAGGTGGAAT+AGG 0.409316 4_4:+60417409 Msa0692080:CDS
GTTGTGTTTGTAGAATCATT+AGG 0.411461 4_4:+60417368 Msa0692080:CDS
GAAGAAGAAGAATCATTAAA+GGG 0.411542 4_4:+60415961 Msa0692080:CDS
TAATTGCTGGTAGGGTTCAT+AGG 0.416479 4_4:+60417527 Msa0692080:CDS
ATCAACGTGTTGACACGGTT+TGG 0.417052 4_4:+60417710 Msa0692080:three_prime_UTR
ACTGGATTTGATTCTTTGGC+TGG 0.418812 4_4:+60417583 Msa0692080:CDS
GTTGACACGGTTTGGATTCA+CGG 0.421092 4_4:+60417718 Msa0692080:three_prime_UTR
CAAGAAATGGCATCTCAAAC+TGG 0.425597 4_4:+60417565 Msa0692080:CDS
GTGGTGTTCATTCAAGTAAT+AGG 0.426313 4_4:+60416514 Msa0692080:CDS
AAAAGAAAAGGTGATTTCCT+TGG 0.433309 4_4:-60416462 None:intergenic
GTATAAGGAGAAAACCAAAA+AGG 0.435847 4_4:+60415921 Msa0692080:CDS
ACTTGAAAACATTCAAGAAA+TGG 0.445655 4_4:+60417552 Msa0692080:CDS
GTGGTGAACAGTTTAACAAA+TGG 0.446542 4_4:+60416589 Msa0692080:CDS
TAATGAACCTTCACTTAGAA+AGG 0.446634 4_4:+60417486 Msa0692080:CDS
CCTCCAGGACCAGGTGTACC+AGG 0.455632 4_4:-60416387 None:intergenic
TCACTGCTTCCTATAGATCT+TGG 0.456992 4_4:-60416210 None:intergenic
GATTCTTTGGCTGGTAAAGT+AGG 0.457682 4_4:+60417592 Msa0692080:CDS
GTTGAAGAAGTCCTAAAAGA+AGG 0.458747 4_4:-60416435 None:intergenic
AGTTGCAGTCCAAGATCTAT+AGG 0.459011 4_4:+60416201 Msa0692080:CDS
TTCCTTCAACCATGCATGAA+AGG 0.460121 4_4:-60415792 None:intergenic
ACCCTTTCATGCATGGTTGA+AGG 0.463554 4_4:+60415790 Msa0692080:five_prime_UTR
ATGCAGAGTAATTGCTGGTA+GGG 0.484307 4_4:+60417519 Msa0692080:CDS
TCCTTCAACCATGCATGAAA+GGG 0.490073 4_4:-60415791 None:intergenic
TACCAGCATGCTTGGAGAGA+TGG 0.491155 4_4:-60416629 None:intergenic
GGTGGTTCTTCAACTTATGT+TGG 0.492368 4_4:+60416354 Msa0692080:CDS
ATGGAAGACTTGTAAAATGA+TGG 0.496180 4_4:+60418101 Msa0692080:three_prime_UTR
ATAGTATGCAGAGTAATTGC+TGG 0.496317 4_4:+60417514 Msa0692080:CDS
TGAGATAACCCTTTCATGCA+TGG 0.497101 4_4:+60415783 Msa0692080:five_prime_UTR
TGGTGAACAGTTTAACAAAT+GGG 0.498621 4_4:+60416590 Msa0692080:CDS
GAGGAAGATCAGGTTGTTCA+AGG 0.499461 4_4:+60416118 Msa0692080:CDS
GACCCTTCTGACAAAAGAAA+AGG 0.499545 4_4:-60416474 None:intergenic
ATCAATGCCTTTCTAAGTGA+AGG 0.505745 4_4:-60417493 None:intergenic
AACAAGCAAATGAGACAAAA+GGG 0.510696 4_4:-60415729 None:intergenic
AATTACAAATGTATGAATAG+GGG 0.510948 4_4:-60418001 None:intergenic
GATCTTGGACTGCAACTTGG+TGG 0.516239 4_4:-60416195 None:intergenic
TTTGGATCATGTACATCTGA+TGG 0.518690 4_4:-60416039 None:intergenic
TGCATTGTAGGGTGTCCTCC+AGG 0.520201 4_4:-60416402 None:intergenic
CATCCTAGGTGTCTAGCTGA+TGG 0.521265 4_4:+60417259 Msa0692080:CDS
CAAAATCCTTCAAAAGATGT+AGG 0.522430 4_4:-60417922 None:intergenic
CACCATCTCTCCAAGCATGC+TGG 0.523843 4_4:+60416627 Msa0692080:CDS
AAACAAGGAAGAAGAGCTCT+AGG 0.526190 4_4:-60417652 None:intergenic
TTCAAAGAAAACCACACTGT+TGG 0.527957 4_4:-60415991 None:intergenic
AACTAGATTTCCAACTTCCA+AGG 0.529920 4_4:-60415895 None:intergenic
AAATTATATGCAGGACAAGC+TGG 0.530091 4_4:+60417107 Msa0692080:CDS
AGGTCTTTATTCAAACATTG+AGG 0.530157 4_4:+60417612 Msa0692080:CDS
AGATTCATCAAGGAAAATAG+TGG 0.534245 4_4:+60417084 Msa0692080:CDS
GTAGGGTGTCCTCCAGGACC+AGG 0.534778 4_4:-60416396 None:intergenic
AGAAAAGGTGATTTCCTTGG+AGG 0.540659 4_4:-60416459 None:intergenic
AGACCTGGTACACCTGGTCC+TGG 0.541493 4_4:+60416384 Msa0692080:CDS
ATAGATCTTGGACTGCAACT+TGG 0.545029 4_4:-60416198 None:intergenic
CACAACATCTACAAGTGGAA+GGG 0.551250 4_4:+60417438 Msa0692080:CDS
GGTTAAAGTAATGCATTGTA+GGG 0.557734 4_4:-60416413 None:intergenic
GGACTTCTTCAACTCCTCCA+AGG 0.558541 4_4:+60416445 Msa0692080:CDS
TATGCAGAGTAATTGCTGGT+AGG 0.562940 4_4:+60417518 Msa0692080:CDS
ACTTTAAGACCTGGTACACC+TGG 0.565382 4_4:+60416378 Msa0692080:CDS
TCACAACATCTACAAGTGGA+AGG 0.571126 4_4:+60417437 Msa0692080:CDS
AACTCCAGAAGAAACATCCT+AGG 0.571187 4_4:+60417245 Msa0692080:CDS
AAATAGTGGAAATTATATGC+AGG 0.573880 4_4:+60417098 Msa0692080:CDS
TTGAAGAAGTCCTAAAAGAA+GGG 0.580726 4_4:-60416434 None:intergenic
TATGTTGGTACTTTAAGACC+TGG 0.582691 4_4:+60416369 Msa0692080:CDS
ATTACAAATGTATGAATAGG+GGG 0.584110 4_4:-60418000 None:intergenic
TCTGCTAAGAAGGAGTTGAA+AGG 0.586835 4_4:+60417400 Msa0692080:CDS
CAAGAAGGGATTAACAGTGG+TGG 0.589162 4_4:+60416303 Msa0692080:CDS
ATTTGAAGAGTACAGAGAGA+TGG 0.595060 4_4:+60417204 Msa0692080:CDS
GTTTGTAGAATCATTAGGAG+TGG 0.602627 4_4:+60417373 Msa0692080:CDS
ACAGGATCAACGTGTTGACA+CGG 0.607146 4_4:+60417705 Msa0692080:three_prime_UTR
TTGCAAATTACCACAAAACA+AGG 0.607767 4_4:-60417667 None:intergenic
TTTCCATCAGCTAGACACCT+AGG 0.608502 4_4:-60417262 None:intergenic
GCTAAGAAGGAGTTGAAAGG+TGG 0.609494 4_4:+60417403 Msa0692080:CDS
AGCAAATGAGACAAAAGGGA+GGG 0.610198 4_4:-60415725 None:intergenic
TTAGAGTTTCAACAAAATCA+CGG 0.615481 4_4:+60417784 Msa0692080:three_prime_UTR
CTCTCTCTATTCTGCCACAG+TGG 0.632803 4_4:-60417144 None:intergenic
GCTAGTGGTGGTAGTAGTAG+TGG 0.635609 4_4:+60416333 Msa0692080:CDS
TTTCAAGAAGGGATTAACAG+TGG 0.654520 4_4:+60416300 Msa0692080:CDS
AGCAAAGAGAAAGAGAAACA+TGG 0.658530 4_4:+60415857 Msa0692080:five_prime_UTR
AGTGGTGGTAGTAGTAGTGG+TGG 0.661261 4_4:+60416336 Msa0692080:CDS
CCTGGTACACCTGGTCCTGG+AGG 0.665004 4_4:+60416387 Msa0692080:CDS
ACCAAGAGAACAAGCTACTG+TGG 0.672385 4_4:-60417308 None:intergenic
ACTGTTACTTGTCACAAATG+TGG 0.687396 4_4:+60416570 Msa0692080:CDS
AAGCAAATGAGACAAAAGGG+AGG 0.691742 4_4:-60415726 None:intergenic
AGGGTAATATGCCAACAGTG+TGG 0.706544 4_4:+60415980 Msa0692080:CDS
GTAAGTTCGACAAAATTACA+GGG 0.709409 4_4:-60417810 None:intergenic
GGTGGTAACAATGCTAGTGG+TGG 0.732313 4_4:+60416321 Msa0692080:CDS
AGTGGTGGTAACAATGCTAG+TGG 0.733810 4_4:+60416318 Msa0692080:CDS
TTAAAGTCAGAAAACCACTG+TGG 0.819817 4_4:+60417130 Msa0692080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTAAAAATTCTTCT+TGG + chr4_4:60416658-60416677 Msa0692080:intron 10.0%
!!! ATTTTATTTTCAAAATATCT+AGG + chr4_4:60416873-60416892 Msa0692080:intron 10.0%
!!! TATGCTATAGAATTTTTTTA+TGG + chr4_4:60416740-60416759 Msa0692080:intron 15.0%
!! CAAACAATTCTAAATTAAAA+AGG - chr4_4:60416840-60416859 None:intergenic 15.0%
!!! ATTTTGAAAATAAAATCTGT+TGG - chr4_4:60416869-60416888 None:intergenic 15.0%
!! AAATTACAAATGTATGAATA+GGG - chr4_4:60418005-60418024 None:intergenic 15.0%
!! AAAATTACAAATGTATGAAT+AGG - chr4_4:60418006-60418025 None:intergenic 15.0%
!! AATCTAAAAGATGTTATTCA+TGG + chr4_4:60416150-60416169 Msa0692080:CDS 20.0%
!! AAAATAACTTCATGAGTTAT+TGG - chr4_4:60416246-60416265 None:intergenic 20.0%
!! AATTCTAAATTAAAAAGGCA+TGG - chr4_4:60416835-60416854 None:intergenic 20.0%
!! AATTACAAATGTATGAATAG+GGG - chr4_4:60418004-60418023 None:intergenic 20.0%
!! AAAATGATGGTACAAATTTA+TGG + chr4_4:60418114-60418133 Msa0692080:three_prime_UTR 20.0%
! AGATGTATAGTAAAAAACAC+GGG - chr4_4:60415705-60415724 None:intergenic 25.0%
! GAGATGTATAGTAAAAAACA+CGG - chr4_4:60415706-60415725 None:intergenic 25.0%
! AGAAGAAGAAGAATCATTAA+AGG + chr4_4:60415960-60415979 Msa0692080:CDS 25.0%
! GAAGAAGAAGAATCATTAAA+GGG + chr4_4:60415961-60415980 Msa0692080:CDS 25.0%
! AGCACAATCTTAACAAAAAA+AGG + chr4_4:60416078-60416097 Msa0692080:CDS 25.0%
! ACAATCTTAACAAAAAAAGG+AGG + chr4_4:60416081-60416100 Msa0692080:CDS 25.0%
!!! AAGTTATTTTGAGTAACTCA+AGG + chr4_4:60416256-60416275 Msa0692080:CDS 25.0%
!! ATTACTTTAACCCTTCTTTT+AGG + chr4_4:60416424-60416443 Msa0692080:CDS 25.0%
!! TAAAAATTCTTCTTGGCTTT+AGG + chr4_4:60416665-60416684 Msa0692080:intron 25.0%
! TTTGTGGTCAGAAAAATATT+TGG - chr4_4:60416695-60416714 None:intergenic 25.0%
!!! GCTATAGAATTTTTTTATGG+TGG + chr4_4:60416743-60416762 Msa0692080:intron 25.0%
!!! AAATCCACACTTTTTGAATT+TGG + chr4_4:60416784-60416803 Msa0692080:intron 25.0%
!!! AATCCACACTTTTTGAATTT+GGG + chr4_4:60416785-60416804 Msa0692080:intron 25.0%
! AATACTAGGATAAAGTAGAT+TGG - chr4_4:60416925-60416944 None:intergenic 25.0%
! TGTTCAATGTTCAAAATACT+AGG - chr4_4:60416939-60416958 None:intergenic 25.0%
!!! AGAAAAATTTGTTTTTCCCT+TGG + chr4_4:60417039-60417058 Msa0692080:intron 25.0%
!! AAATAGTGGAAATTATATGC+AGG + chr4_4:60417098-60417117 Msa0692080:CDS 25.0%
!!! CTAAAGTTTTTTGCATATTG+TGG - chr4_4:60417180-60417199 None:intergenic 25.0%
!!! ATTTCTTGAATGTTTTCAAG+TGG - chr4_4:60417553-60417572 None:intergenic 25.0%
! ACTTGAAAACATTCAAGAAA+TGG + chr4_4:60417552-60417571 Msa0692080:CDS 25.0%
! TTAGAGTTTCAACAAAATCA+CGG + chr4_4:60417784-60417803 Msa0692080:three_prime_UTR 25.0%
! CCATATAAAAGCCAAAAATA+GGG - chr4_4:60417891-60417910 None:intergenic 25.0%
! TCCATATAAAAGCCAAAAAT+AGG - chr4_4:60417892-60417911 None:intergenic 25.0%
!!! TATTTTTGGCTTTTATATGG+AGG + chr4_4:60417891-60417910 Msa0692080:three_prime_UTR 25.0%
! ATTACAAATGTATGAATAGG+GGG - chr4_4:60418003-60418022 None:intergenic 25.0%
!! TTGTGACAATTCAAATTTTC+TGG - chr4_4:60418069-60418088 None:intergenic 25.0%
! GTCACAACTAGAAATAAATA+TGG + chr4_4:60418082-60418101 Msa0692080:three_prime_UTR 25.0%
AACAAGCAAATGAGACAAAA+GGG - chr4_4:60415732-60415751 None:intergenic 30.0%
! GGAAATCTAGTTCATGTATA+AGG + chr4_4:60415906-60415925 Msa0692080:exon 30.0%
GTATAAGGAGAAAACCAAAA+AGG + chr4_4:60415921-60415940 Msa0692080:CDS 30.0%
! TTCTTCTCTTTCTACCTTTT+TGG - chr4_4:60415938-60415957 None:intergenic 30.0%
ATGTACATGATCCAAAAACA+AGG + chr4_4:60416046-60416065 Msa0692080:CDS 30.0%
!!! CTTAAATGCTTCCTTGTTTT+TGG - chr4_4:60416060-60416079 None:intergenic 30.0%
ATCTTAACAAAAAAAGGAGG+AGG + chr4_4:60416084-60416103 Msa0692080:CDS 30.0%
!!! AAAATCACTGGTTTTCAAGA+AGG + chr4_4:60416288-60416307 Msa0692080:CDS 30.0%
!!! AAATCACTGGTTTTCAAGAA+GGG + chr4_4:60416289-60416308 Msa0692080:CDS 30.0%
GGTTAAAGTAATGCATTGTA+GGG - chr4_4:60416416-60416435 None:intergenic 30.0%
TTGAAGAAGTCCTAAAAGAA+GGG - chr4_4:60416437-60416456 None:intergenic 30.0%
AAAAGAAAAGGTGATTTCCT+TGG - chr4_4:60416465-60416484 None:intergenic 30.0%
TCTCTTGAAACAGATTCTAA+TGG + chr4_4:60416540-60416559 Msa0692080:CDS 30.0%
TGGTGAACAGTTTAACAAAT+GGG + chr4_4:60416590-60416609 Msa0692080:CDS 30.0%
AAAATATTTACCAGCATGCT+TGG - chr4_4:60416640-60416659 None:intergenic 30.0%
! TTTTCTGACCACAAACTTTT+TGG + chr4_4:60416700-60416719 Msa0692080:intron 30.0%
AGCATATCAGATAAAGACTA+TGG - chr4_4:60416726-60416745 None:intergenic 30.0%
GGATAAAGTAGATTGGAAAA+GGG - chr4_4:60416918-60416937 None:intergenic 30.0%
AGGATAAAGTAGATTGGAAA+AGG - chr4_4:60416919-60416938 None:intergenic 30.0%
AGATTCATCAAGGAAAATAG+TGG + chr4_4:60417084-60417103 Msa0692080:CDS 30.0%
!! CAGAATAGAGAGAGTTTTAA+AGG + chr4_4:60417153-60417172 Msa0692080:CDS 30.0%
! CTGATGGAAATGAACTTTTA+CGG + chr4_4:60417275-60417294 Msa0692080:CDS 30.0%
! AATGAACTTTTACGGTTCTA+TGG + chr4_4:60417283-60417302 Msa0692080:CDS 30.0%
GTTGTGTTTGTAGAATCATT+AGG + chr4_4:60417368-60417387 Msa0692080:CDS 30.0%
TAATGAACCTTCACTTAGAA+AGG + chr4_4:60417486-60417505 Msa0692080:CDS 30.0%
TCAAACTGGATTTGATTCTT+TGG + chr4_4:60417579-60417598 Msa0692080:CDS 30.0%
AGGTCTTTATTCAAACATTG+AGG + chr4_4:60417612-60417631 Msa0692080:CDS 30.0%
TTGCAAATTACCACAAAACA+AGG - chr4_4:60417670-60417689 None:intergenic 30.0%
GTAAGTTCGACAAAATTACA+GGG - chr4_4:60417813-60417832 None:intergenic 30.0%
!! TAAGTGCATGTTTTGAATGA+CGG - chr4_4:60417835-60417854 None:intergenic 30.0%
!!! CCCTATTTTTGGCTTTTATA+TGG + chr4_4:60417888-60417907 Msa0692080:three_prime_UTR 30.0%
CAAAATCCTTCAAAAGATGT+AGG - chr4_4:60417925-60417944 None:intergenic 30.0%
ATGGAAGACTTGTAAAATGA+TGG + chr4_4:60418101-60418120 Msa0692080:three_prime_UTR 30.0%
GAACAAGCAAATGAGACAAA+AGG - chr4_4:60415733-60415752 None:intergenic 35.0%
AGCAAAGAGAAAGAGAAACA+TGG + chr4_4:60415857-60415876 Msa0692080:five_prime_UTR 35.0%
!!! CTTCCAAGGCTTTTTCAAAA+GGG - chr4_4:60415884-60415903 None:intergenic 35.0%
!!! ACTTCCAAGGCTTTTTCAAA+AGG - chr4_4:60415885-60415904 None:intergenic 35.0%
TTTGAAAAAGCCTTGGAAGT+TGG + chr4_4:60415885-60415904 Msa0692080:five_prime_UTR 35.0%
AACTAGATTTCCAACTTCCA+AGG - chr4_4:60415898-60415917 None:intergenic 35.0%
TTCAAAGAAAACCACACTGT+TGG - chr4_4:60415994-60416013 None:intergenic 35.0%
TTTGGATCATGTACATCTGA+TGG - chr4_4:60416042-60416061 None:intergenic 35.0%
TTAACAAAAAAAGGAGGAGG+AGG + chr4_4:60416087-60416106 Msa0692080:CDS 35.0%
AGGTGTGAGTTAAAAATCAC+TGG + chr4_4:60416276-60416295 Msa0692080:CDS 35.0%
TTTCAAGAAGGGATTAACAG+TGG + chr4_4:60416300-60416319 Msa0692080:CDS 35.0%
!! TATGTTGGTACTTTAAGACC+TGG + chr4_4:60416369-60416388 Msa0692080:CDS 35.0%
GGGTTAAAGTAATGCATTGT+AGG - chr4_4:60416417-60416436 None:intergenic 35.0%
GTTGAAGAAGTCCTAAAAGA+AGG - chr4_4:60416438-60416457 None:intergenic 35.0%
! TCACCTTTTCTTTTGTCAGA+AGG + chr4_4:60416471-60416490 Msa0692080:CDS 35.0%
! CACCTTTTCTTTTGTCAGAA+GGG + chr4_4:60416472-60416491 Msa0692080:CDS 35.0%
GTGGTGTTCATTCAAGTAAT+AGG + chr4_4:60416514-60416533 Msa0692080:CDS 35.0%
! ACTGTTACTTGTCACAAATG+TGG + chr4_4:60416570-60416589 Msa0692080:CDS 35.0%
GTGGTGAACAGTTTAACAAA+TGG + chr4_4:60416589-60416608 Msa0692080:CDS 35.0%
AGTCCCAAATTCAAAAAGTG+TGG - chr4_4:60416791-60416810 None:intergenic 35.0%
AAAAGTTCAGTAACTGCCAA+GGG - chr4_4:60417058-60417077 None:intergenic 35.0%
!! TTTTGGAAGGAGATTCATCA+AGG + chr4_4:60417074-60417093 Msa0692080:CDS 35.0%
AAATTATATGCAGGACAAGC+TGG + chr4_4:60417107-60417126 Msa0692080:CDS 35.0%
TTAAAGTCAGAAAACCACTG+TGG + chr4_4:60417130-60417149 Msa0692080:CDS 35.0%
! ATTTGAAGAGTACAGAGAGA+TGG + chr4_4:60417204-60417223 Msa0692080:CDS 35.0%
GTTTGTAGAATCATTAGGAG+TGG + chr4_4:60417373-60417392 Msa0692080:CDS 35.0%
! GTTTTCACAACATCTACAAG+TGG + chr4_4:60417433-60417452 Msa0692080:CDS 35.0%
ATCAATGCCTTTCTAAGTGA+AGG - chr4_4:60417496-60417515 None:intergenic 35.0%
ATAGTATGCAGAGTAATTGC+TGG + chr4_4:60417514-60417533 Msa0692080:CDS 35.0%
CAAATCATGAACCCAAAAAC+AGG + chr4_4:60417687-60417706 Msa0692080:exon 35.0%
!! AACACGTTGATCCTGTTTTT+GGG - chr4_4:60417701-60417720 None:intergenic 35.0%
GGTAAGTTCGACAAAATTAC+AGG - chr4_4:60417814-60417833 None:intergenic 35.0%
AAAAGCCAAAAATAGGGTAG+TGG - chr4_4:60417885-60417904 None:intergenic 35.0%
!!! GCTTTTATATGGAGGTACTA+TGG + chr4_4:60417899-60417918 Msa0692080:three_prime_UTR 35.0%
AGCAAATGAGACAAAAGGGA+GGG - chr4_4:60415728-60415747 None:intergenic 40.0%
AAGCAAATGAGACAAAAGGG+AGG - chr4_4:60415729-60415748 None:intergenic 40.0%
! AGAAGAGCACAGAATGAGTT+AGG - chr4_4:60415762-60415781 None:intergenic 40.0%
TGAGATAACCCTTTCATGCA+TGG + chr4_4:60415783-60415802 Msa0692080:five_prime_UTR 40.0%
TCCTTCAACCATGCATGAAA+GGG - chr4_4:60415794-60415813 None:intergenic 40.0%
TTCCTTCAACCATGCATGAA+AGG - chr4_4:60415795-60415814 None:intergenic 40.0%
ATAGATCTTGGACTGCAACT+TGG - chr4_4:60416201-60416220 None:intergenic 40.0%
AGTTGCAGTCCAAGATCTAT+AGG + chr4_4:60416201-60416220 Msa0692080:CDS 40.0%
TCACTGCTTCCTATAGATCT+TGG - chr4_4:60416213-60416232 None:intergenic 40.0%
GGTGGTTCTTCAACTTATGT+TGG + chr4_4:60416354-60416373 Msa0692080:CDS 40.0%
AGAAAAGGTGATTTCCTTGG+AGG - chr4_4:60416462-60416481 None:intergenic 40.0%
GACCCTTCTGACAAAAGAAA+AGG - chr4_4:60416477-60416496 None:intergenic 40.0%
! CTTTTGTCAGAAGGGTCTAA+TGG + chr4_4:60416480-60416499 Msa0692080:CDS 40.0%
! GAAGGGTCTAATGGTTTTCA+TGG + chr4_4:60416489-60416508 Msa0692080:CDS 40.0%
! TCTAATGGTTTTCATGGTGG+TGG + chr4_4:60416495-60416514 Msa0692080:CDS 40.0%
GACTATGGCCAAAAAGTTTG+TGG - chr4_4:60416711-60416730 None:intergenic 40.0%
CAAAAGTTCAGTAACTGCCA+AGG - chr4_4:60417059-60417078 None:intergenic 40.0%
! CTTGGCAGTTACTGAACTTT+TGG + chr4_4:60417057-60417076 Msa0692080:intron 40.0%
! GCAGTTACTGAACTTTTGGA+AGG + chr4_4:60417061-60417080 Msa0692080:intron 40.0%
AACTCCAGAAGAAACATCCT+AGG + chr4_4:60417245-60417264 Msa0692080:CDS 40.0%
! GAGTGGTTTTTCTGCTAAGA+AGG + chr4_4:60417390-60417409 Msa0692080:CDS 40.0%
TCTGCTAAGAAGGAGTTGAA+AGG + chr4_4:60417400-60417419 Msa0692080:CDS 40.0%
AAGGAGTTGAAAGGTGGAAT+AGG + chr4_4:60417409-60417428 Msa0692080:CDS 40.0%
TCACAACATCTACAAGTGGA+AGG + chr4_4:60417437-60417456 Msa0692080:CDS 40.0%
CACAACATCTACAAGTGGAA+GGG + chr4_4:60417438-60417457 Msa0692080:CDS 40.0%
TATGCAGAGTAATTGCTGGT+AGG + chr4_4:60417518-60417537 Msa0692080:CDS 40.0%
ATGCAGAGTAATTGCTGGTA+GGG + chr4_4:60417519-60417538 Msa0692080:CDS 40.0%
TAATTGCTGGTAGGGTTCAT+AGG + chr4_4:60417527-60417546 Msa0692080:CDS 40.0%
CAAGAAATGGCATCTCAAAC+TGG + chr4_4:60417565-60417584 Msa0692080:CDS 40.0%
ACTGGATTTGATTCTTTGGC+TGG + chr4_4:60417583-60417602 Msa0692080:CDS 40.0%
GATTCTTTGGCTGGTAAAGT+AGG + chr4_4:60417592-60417611 Msa0692080:CDS 40.0%
AAACAAGGAAGAAGAGCTCT+AGG - chr4_4:60417655-60417674 None:intergenic 40.0%
!!! AGCTCTTCTTCCTTGTTTTG+TGG + chr4_4:60417657-60417676 Msa0692080:CDS 40.0%
! CAACACGTTGATCCTGTTTT+TGG - chr4_4:60417702-60417721 None:intergenic 40.0%
GTTTGGATTCACGGTGAATT+TGG + chr4_4:60417727-60417746 Msa0692080:three_prime_UTR 40.0%
! CAAAAATAGGGTAGTGGTAG+TGG - chr4_4:60417879-60417898 None:intergenic 40.0%
! CACTACCACTACCCTATTTT+TGG + chr4_4:60417877-60417896 Msa0692080:three_prime_UTR 40.0%
! CTATGGCCTACATCTTTTGA+AGG + chr4_4:60417916-60417935 Msa0692080:three_prime_UTR 40.0%
AAGTCACTTGTGCTTGTTCA+TGG + chr4_4:60417958-60417977 Msa0692080:three_prime_UTR 40.0%
ACCCTTTCATGCATGGTTGA+AGG + chr4_4:60415790-60415809 Msa0692080:five_prime_UTR 45.0%
!! GGACCCTTTTGAAAAAGCCT+TGG + chr4_4:60415878-60415897 Msa0692080:five_prime_UTR 45.0%
AGGGTAATATGCCAACAGTG+TGG + chr4_4:60415980-60415999 Msa0692080:CDS 45.0%
ACAAAAAAAGGAGGAGGAGG+AGG + chr4_4:60416090-60416109 Msa0692080:CDS 45.0%
! GAGGAAGATCAGGTTGTTCA+AGG + chr4_4:60416118-60416137 Msa0692080:CDS 45.0%
CAAGAAGGGATTAACAGTGG+TGG + chr4_4:60416303-60416322 Msa0692080:CDS 45.0%
AGTGGTGGTAACAATGCTAG+TGG + chr4_4:60416318-60416337 Msa0692080:CDS 45.0%
!! ACTTTAAGACCTGGTACACC+TGG + chr4_4:60416378-60416397 Msa0692080:CDS 45.0%
! GGGTCTAATGGTTTTCATGG+TGG + chr4_4:60416492-60416511 Msa0692080:CDS 45.0%
GACACCTAGGATGTTTCTTC+TGG - chr4_4:60417252-60417271 None:intergenic 45.0%
TTTCCATCAGCTAGACACCT+AGG - chr4_4:60417265-60417284 None:intergenic 45.0%
!! ACCACAGTAGCTTGTTCTCT+TGG + chr4_4:60417307-60417326 Msa0692080:CDS 45.0%
ACCAAGAGAACAAGCTACTG+TGG - chr4_4:60417311-60417330 None:intergenic 45.0%
GCTTGTTCTCTTGGTCTCAA+TGG + chr4_4:60417316-60417335 Msa0692080:CDS 45.0%
GCTAAGAAGGAGTTGAAAGG+TGG + chr4_4:60417403-60417422 Msa0692080:CDS 45.0%
! ACAGGATCAACGTGTTGACA+CGG + chr4_4:60417705-60417724 Msa0692080:three_prime_UTR 45.0%
! ATCAACGTGTTGACACGGTT+TGG + chr4_4:60417710-60417729 Msa0692080:three_prime_UTR 45.0%
! GTTGACACGGTTTGGATTCA+CGG + chr4_4:60417718-60417737 Msa0692080:three_prime_UTR 45.0%
AAAAAAGGAGGAGGAGGAGG+AGG + chr4_4:60416093-60416112 Msa0692080:CDS 50.0%
GATCTTGGACTGCAACTTGG+TGG - chr4_4:60416198-60416217 None:intergenic 50.0%
GGTGGTAACAATGCTAGTGG+TGG + chr4_4:60416321-60416340 Msa0692080:CDS 50.0%
GCTAGTGGTGGTAGTAGTAG+TGG + chr4_4:60416333-60416352 Msa0692080:CDS 50.0%
AGTGGTGGTAGTAGTAGTGG+TGG + chr4_4:60416336-60416355 Msa0692080:CDS 50.0%
GGACTTCTTCAACTCCTCCA+AGG + chr4_4:60416445-60416464 Msa0692080:CDS 50.0%
TACCAGCATGCTTGGAGAGA+TGG - chr4_4:60416632-60416651 None:intergenic 50.0%
CTCTCTCTATTCTGCCACAG+TGG - chr4_4:60417147-60417166 None:intergenic 50.0%
CATCCTAGGTGTCTAGCTGA+TGG + chr4_4:60417259-60417278 Msa0692080:CDS 50.0%
! TGCATTGTAGGGTGTCCTCC+AGG - chr4_4:60416405-60416424 None:intergenic 55.0%
CACCATCTCTCCAAGCATGC+TGG + chr4_4:60416627-60416646 Msa0692080:CDS 55.0%
AAAGGAGGAGGAGGAGGAGG+AGG + chr4_4:60416096-60416115 Msa0692080:CDS 60.0%
GGAGGAGGAGGAGGAAGATC+AGG + chr4_4:60416108-60416127 Msa0692080:CDS 60.0%
AGACCTGGTACACCTGGTCC+TGG + chr4_4:60416384-60416403 Msa0692080:CDS 60.0%
CCTCCAGGACCAGGTGTACC+AGG - chr4_4:60416390-60416409 None:intergenic 65.0%
CCTGGTACACCTGGTCCTGG+AGG + chr4_4:60416387-60416406 Msa0692080:CDS 65.0%
! GTAGGGTGTCCTCCAGGACC+AGG - chr4_4:60416399-60416418 None:intergenic 65.0%
GGAGGAGGAGGAGGAGGAGG+AGG + chr4_4:60416099-60416118 Msa0692080:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 60415669 60418148 60415669 ID=Msa0692080;Name=Msa0692080
chr4_4 mRNA 60415669 60418148 60415669 ID=Msa0692080-mRNA-1;Parent=Msa0692080;Name=Msa0692080-mRNA-1;_AED=0.00;_eAED=0.00;_QI=250|1|1|1|1|1|2|452|453
chr4_4 exon 60415669 60416648 60415669 ID=Msa0692080-mRNA-1:exon:16578;Parent=Msa0692080-mRNA-1
chr4_4 exon 60417065 60418148 60417065 ID=Msa0692080-mRNA-1:exon:16579;Parent=Msa0692080-mRNA-1
chr4_4 five_prime_UTR 60415669 60415918 60415669 ID=Msa0692080-mRNA-1:five_prime_utr;Parent=Msa0692080-mRNA-1
chr4_4 CDS 60415919 60416648 60415919 ID=Msa0692080-mRNA-1:cds;Parent=Msa0692080-mRNA-1
chr4_4 CDS 60417065 60417696 60417065 ID=Msa0692080-mRNA-1:cds;Parent=Msa0692080-mRNA-1
chr4_4 three_prime_UTR 60417697 60418148 60417697 ID=Msa0692080-mRNA-1:three_prime_utr;Parent=Msa0692080-mRNA-1
Gene Sequence

>Msa0692080

ATGTATAAGGAGAAAACCAAAAAGGTAGAAAGAGAAGAAGAAGAAGAAGAAGAATCATTAAAGGGTAATATGCCAACAGTGTGGTTTTCTTTGAAGAAGTCACTACATTGCAAATCAGAACCATCAGATGTACATGATCCAAAAACAAGGAAGCATTTAAGCACAATCTTAACAAAAAAAGGAGGAGGAGGAGGAGGAGGAGGAAGATCAGGTTGTTCAAGGTCAATAGCAAATCTAAAAGATGTTATTCATGGAAGCAAAAGACATATTGAAAAACCACCAAGTTGCAGTCCAAGATCTATAGGAAGCAGTGAGTTTCTTAATCCAATAACTCATGAAGTTATTTTGAGTAACTCAAGGTGTGAGTTAAAAATCACTGGTTTTCAAGAAGGGATTAACAGTGGTGGTAACAATGCTAGTGGTGGTAGTAGTAGTGGTGGTTCTTCAACTTATGTTGGTACTTTAAGACCTGGTACACCTGGTCCTGGAGGACACCCTACAATGCATTACTTTAACCCTTCTTTTAGGACTTCTTCAACTCCTCCAAGGAAATCACCTTTTCTTTTGTCAGAAGGGTCTAATGGTTTTCATGGTGGTGGTGTTCATTCAAGTAATAGGATGTCTCTTGAAACAGATTCTAATGGTTCTTCAACTGTTACTTGTCACAAATGTGGTGAACAGTTTAACAAATGGGAAGCTGCTGAAGCTCACCATCTCTCCAAGCATGCTGTTACTGAACTTTTGGAAGGAGATTCATCAAGGAAAATAGTGGAAATTATATGCAGGACAAGCTGGTTAAAGTCAGAAAACCACTGTGGCAGAATAGAGAGAGTTTTAAAGGTCCACAATATGCAAAAAACTTTAGCTAGATTTGAAGAGTACAGAGAGATGGTAAAAATCAAAGCAAGTAAACTCCAGAAGAAACATCCTAGGTGTCTAGCTGATGGAAATGAACTTTTACGGTTCTATGGAACCACAGTAGCTTGTTCTCTTGGTCTCAATGGCTCTTCAAGTCTTTGTTTATCAGAAAAATGTTGTGTTTGTAGAATCATTAGGAGTGGTTTTTCTGCTAAGAAGGAGTTGAAAGGTGGAATAGGTGTTTTCACAACATCTACAAGTGGAAGGGCTTTTGAATCTATAGAAATTTTTGATAATGAACCTTCACTTAGAAAGGCATTGATAGTATGCAGAGTAATTGCTGGTAGGGTTCATAGGCCACTTGAAAACATTCAAGAAATGGCATCTCAAACTGGATTTGATTCTTTGGCTGGTAAAGTAGGTCTTTATTCAAACATTGAGGAGCTTTATTTGCTCAATCCTAGAGCTCTTCTTCCTTGTTTTGTGGTAATTTGCAAATCATGA

Protein sequence

>Msa0692080

MYKEKTKKVEREEEEEEESLKGNMPTVWFSLKKSLHCKSEPSDVHDPKTRKHLSTILTKKGGGGGGGGRSGCSRSIANLKDVIHGSKRHIEKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGFQEGINSGGNNASGGSSSGGSSTYVGTLRPGTPGPGGHPTMHYFNPSFRTSSTPPRKSPFLLSEGSNGFHGGGVHSSNRMSLETDSNGSSTVTCHKCGEQFNKWEAAEAHHLSKHAVTELLEGDSSRKIVEIICRTSWLKSENHCGRIERVLKVHNMQKTLARFEEYREMVKIKASKLQKKHPRCLADGNELLRFYGTTVACSLGLNGSSSLCLSEKCCVCRIIRSGFSAKKELKGGIGVFTTSTSGRAFESIEIFDNEPSLRKALIVCRVIAGRVHRPLENIQEMASQTGFDSLAGKVGLYSNIEELYLLNPRALLPCFVVICKS*