AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0519220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0519220 MtrunA17_Chr3g0133161 88.732 284 0 1 1 284 1 252 0.0 500
Msa0519220 MtrunA17_Chr3g0132301 67.658 269 54 2 11 279 8 243 6.75e-129 366
Msa0519220 MtrunA17_Chr5g0426551 66.543 269 57 2 11 279 8 243 2.86e-128 365
Msa0519220 MtrunA17_Chr1g0164601 64.982 277 60 4 1 276 1 241 9.04e-117 335
Msa0519220 MtrunA17_Chr3g0082111 64.621 277 61 4 1 276 31 271 1.70e-115 333
Msa0519220 MtrunA17_Chr2g0325591 57.664 274 81 2 10 283 6 244 2.74e-109 317
Msa0519220 MtrunA17_Chr5g0418971 58.801 267 75 2 11 277 7 238 1.72e-106 310
Msa0519220 MtrunA17_Chr8g0379011 57.621 269 79 2 11 279 7 240 5.61e-106 308
Msa0519220 MtrunA17_Chr2g0283791 56.877 269 80 3 12 280 6 238 2.38e-102 299
Msa0519220 MtrunA17_Chr2g0316011 56.929 267 80 2 11 277 8 239 7.21e-102 298
Msa0519220 MtrunA17_Chr4g0043141 59.483 232 81 2 46 277 14 232 2.55e-95 281
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0519220 AT5G10450.1 74.275 276 39 1 8 283 4 247 4.11e-149 417
Msa0519220 AT5G65430.1 73.188 276 42 1 8 283 4 247 1.78e-147 413
Msa0519220 AT5G10450.2 74.539 271 37 1 8 278 4 242 5.52e-146 409
Msa0519220 AT5G10450.3 74.539 271 37 1 8 278 4 242 1.30e-145 409
Msa0519220 AT5G10450.4 74.539 271 37 1 8 278 4 242 1.42e-145 409
Msa0519220 AT5G65430.2 73.432 271 40 1 8 278 4 242 1.60e-144 406
Msa0519220 AT5G65430.3 73.432 271 40 1 8 278 4 242 6.25e-144 405
Msa0519220 AT1G35160.1 64.835 273 63 2 11 283 11 250 8.74e-126 359
Msa0519220 AT1G78300.1 65.185 270 61 2 10 279 4 240 2.33e-125 358
Msa0519220 AT4G09000.1 64.576 271 63 2 11 281 10 247 1.01e-124 357
Msa0519220 AT3G02520.1 64.945 271 62 2 10 280 4 241 2.59e-124 355
Msa0519220 AT3G02520.2 64.945 271 62 2 10 280 4 241 2.59e-124 355
Msa0519220 AT1G35160.2 65.299 268 60 2 11 278 11 245 4.53e-124 356
Msa0519220 AT5G38480.1 64.576 271 63 2 10 280 3 240 5.36e-123 352
Msa0519220 AT4G09000.2 64.925 268 61 2 11 278 10 244 2.32e-122 352
Msa0519220 AT5G38480.3 64.234 274 65 2 10 283 3 243 2.59e-122 350
Msa0519220 AT5G38480.2 64.234 274 65 2 10 283 3 243 2.59e-122 350
Msa0519220 AT5G16050.1 64.945 271 62 2 10 280 6 243 2.69e-118 340
Msa0519220 AT5G16050.2 64.945 271 62 2 10 280 6 243 2.69e-118 340
Msa0519220 AT1G26480.1 59.551 267 73 2 11 277 10 241 8.95e-109 316
Msa0519220 AT2G42590.2 56.410 273 84 2 11 283 7 244 2.81e-101 297
Msa0519220 AT2G42590.1 56.667 270 82 2 11 280 7 241 1.16e-100 295
Msa0519220 AT2G42590.3 56.667 270 82 2 11 280 7 241 1.48e-100 295
Msa0519220 AT1G34760.1 55.762 269 84 2 11 279 5 238 3.47e-100 294
Msa0519220 AT1G34760.2 55.762 269 84 2 11 279 5 238 3.50e-100 294
Msa0519220 AT1G22300.1 56.044 273 85 2 11 283 5 242 6.92e-97 285
Msa0519220 AT1G22300.2 56.044 273 85 2 11 283 5 242 7.23e-97 285
Msa0519220 AT1G22300.3 55.926 270 84 2 11 280 5 239 1.30e-95 282
Msa0519220 AT1G78220.1 38.346 266 128 3 11 275 5 235 5.98e-55 178
Msa0519220 AT1G22290.1 38.776 196 99 5 14 207 8 184 4.71e-32 117
Msa0519220 AT1G22290.2 38.776 196 99 5 14 207 8 184 1.25e-31 117
Msa0519220 AT2G10450.1 68.421 38 12 0 243 280 16 53 2.30e-11 59.3

Find 70 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCCAATCAATTTATAAATT+AGG 0.111804 3_4:+71206094 None:intergenic
TGCGCCAGATATAATTTAAT+TGG 0.184846 3_4:+71205984 None:intergenic
GCCAATCAATTTATAAATTA+GGG 0.197574 3_4:+71206095 None:intergenic
TATAAGTGTGCTGTCTTTGT+AGG 0.261422 3_4:+71206410 None:intergenic
TGAGCCTTGATATCCCTTAT+AGG 0.276927 3_4:-71206187 Msa0519220:exon
GAATGTTTGTGGTAGTATTC+TGG 0.294961 3_4:-71208233 Msa0519220:CDS
ATACAACCCGTCAACCTATA+AGG 0.301012 3_4:+71206173 None:intergenic
GGGTGATTATCATAGGTATT+TGG 0.311976 3_4:-71208140 Msa0519220:CDS
ACACATACTGTTCTCTGTTT+AGG 0.318322 3_4:+71208521 None:intergenic
ACCCTAATTTATAAATTGAT+TGG 0.328807 3_4:-71206096 Msa0519220:three_prime_UTR
ATCAACTCATCCTATAAGAT+TGG 0.331215 3_4:-71207941 Msa0519220:CDS
TGAGGAAGCAATTGCTGAAC+TGG 0.348492 3_4:-71206451 Msa0519220:CDS
AGAGCCAAACCCAATCTTAT+AGG 0.362825 3_4:+71207931 None:intergenic
AGCTTGTGACATGGCCAAAC+AGG 0.376909 3_4:-71207863 Msa0519220:intron
AGATCCAATTAAATTATATC+TGG 0.377385 3_4:-71205988 Msa0519220:three_prime_UTR
CGTTAACTCTGATTCAACTT+TGG 0.380898 3_4:+71208255 None:intergenic
TCATCCTATAAGATTGGGTT+TGG 0.386635 3_4:-71207935 Msa0519220:CDS
TGCTTCTTCAAGTGAAAGTA+AGG 0.390843 3_4:-71208182 Msa0519220:CDS
TCAACATAACAGAATCTTTG+TGG 0.397796 3_4:+71207597 None:intergenic
CAGATTAACACAAACCTGTT+TGG 0.398433 3_4:+71207849 None:intergenic
TGAGAGACAACCTCACCCTT+TGG 0.419313 3_4:-71206377 Msa0519220:CDS
TATTTGGCTGAGTTTAAGAT+TGG 0.435348 3_4:-71208124 Msa0519220:CDS
TGATATCCCTTATAGGTTGA+CGG 0.443417 3_4:-71206180 Msa0519220:three_prime_UTR
ATTGCTGAACTGGACACATT+AGG 0.448432 3_4:-71206441 Msa0519220:CDS
TACAACCCGTCAACCTATAA+GGG 0.450779 3_4:+71206174 None:intergenic
TCAACTCATCCTATAAGATT+GGG 0.451846 3_4:-71207940 Msa0519220:CDS
TGGTAGTATTCTGGAGTTGT+TGG 0.453677 3_4:-71208224 Msa0519220:CDS
GATATCCCTTATAGGTTGAC+GGG 0.458675 3_4:-71206179 Msa0519220:three_prime_UTR
AGATGAAGGGTGATTATCAT+AGG 0.459315 3_4:-71208147 Msa0519220:CDS
TATTCTTCCTCTGAAGGAGG+TGG 0.459941 3_4:-71206153 Msa0519220:three_prime_UTR
TCTTGTAAGCGACGGATATG+AGG 0.463010 3_4:+71208386 None:intergenic
ATTTGGATATATTGTCTGAA+TGG 0.473124 3_4:-71206012 Msa0519220:three_prime_UTR
AAGAGAGAAGAGAGAATCAT+GGG 0.475360 3_4:-71208562 Msa0519220:exon
CGTTTCTTCGATTGAACAGA+AGG 0.478904 3_4:-71208329 Msa0519220:CDS
AAAGAGAGAAGAGAGAATCA+TGG 0.480567 3_4:-71208563 Msa0519220:exon
CCTTTGGACTTCTGATGTCC+AGG 0.486316 3_4:-71206361 Msa0519220:intron
TTTGGATATATTGTCTGAAT+GGG 0.490091 3_4:-71206011 Msa0519220:three_prime_UTR
GTTGTCTTACAAAGCTGCAC+AGG 0.491542 3_4:-71208068 Msa0519220:intron
TTCATGCAGAAGCTTGTAGT+GGG 0.493249 3_4:-71208448 Msa0519220:CDS
AATCTTATAGGATGAGTTGA+TGG 0.494756 3_4:+71207943 None:intergenic
TCAGAGTTAACGAATGTTTG+TGG 0.495537 3_4:-71208244 Msa0519220:CDS
TCGATTGAACAGAAGGAAGA+AGG 0.502247 3_4:-71208322 Msa0519220:CDS
GATATCAAGGCTCATCTAGC+TGG 0.506112 3_4:+71206196 None:intergenic
CTTCATGCAGAAGCTTGTAG+TGG 0.529618 3_4:-71208449 Msa0519220:CDS
TCAACCTATAAGGGATATCA+AGG 0.529736 3_4:+71206183 None:intergenic
CTTTCACTTGAAGAAGCAGA+AGG 0.537834 3_4:+71208187 None:intergenic
ATTTGTGATATAGTGTCGTA+TGG 0.540446 3_4:-71206071 Msa0519220:three_prime_UTR
TAAAATTGCTTGACCAAACA+AGG 0.540686 3_4:+71207622 None:intergenic
GGGTTGTATTCTTCCTCTGA+AGG 0.548463 3_4:-71206159 Msa0519220:three_prime_UTR
CACTACAAGCTTCTGCATGA+AGG 0.552358 3_4:+71208450 None:intergenic
ATTCTTCCTCTGAAGGAGGT+GGG 0.567808 3_4:-71206152 Msa0519220:three_prime_UTR
GTCGCTTACAAGAACGTGAT+CGG 0.573437 3_4:-71208376 Msa0519220:CDS
CAGAGCTTAGCGTCGAAGAG+AGG 0.573495 3_4:-71208411 Msa0519220:CDS
CTGGACATCAGAAGTCCAAA+GGG 0.585147 3_4:+71206362 None:intergenic
AGCTGAACGCTACGAGGAGA+TGG 0.585286 3_4:-71208476 Msa0519220:CDS
TCGACGCTAAGCTCTGATGA+TGG 0.586328 3_4:+71208418 None:intergenic
CATCAGAAGTCCAAAGGGTG+AGG 0.595169 3_4:+71206367 None:intergenic
TCATAGCCCACCTCCTTCAG+AGG 0.601484 3_4:+71206146 None:intergenic
TTGTATTCTTCCTCTGAAGG+AGG 0.611172 3_4:-71206156 Msa0519220:three_prime_UTR
ATCTGACAAAGCTTGTGACA+TGG 0.613255 3_4:-71207872 Msa0519220:CDS
CCTGGACATCAGAAGTCCAA+AGG 0.616148 3_4:+71206361 None:intergenic
AAATTCAACACTAATTGCTG+AGG 0.616281 3_4:-71207573 Msa0519220:intron
AGATCATGTTGTGCTTGTGA+AGG 0.627894 3_4:-71208287 Msa0519220:CDS
GTTTAAGGATATTGCTGCTG+CGG 0.646957 3_4:-71207971 Msa0519220:intron
GCTAAGCTCTGATGATGGTG+TGG 0.653682 3_4:+71208423 None:intergenic
TCATGCAGAAGCTTGTAGTG+GGG 0.666058 3_4:-71208447 Msa0519220:CDS
AGAGAAGAGAGAATCATGGG+TGG 0.672151 3_4:-71208559 Msa0519220:exon
TCGGATCGCTACGTGCTGCG+TGG 0.678712 3_4:-71208357 Msa0519220:CDS
AGAACAAGCTGAACGCTACG+AGG 0.693981 3_4:-71208482 Msa0519220:CDS
GATCACGTTCTTGTAAGCGA+CGG 0.709037 3_4:+71208378 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATAAATCACAAATTAA+AGG + chr3_4:71206870-71206889 None:intergenic 10.0%
!!! GTTTTTTATTATAAGATGAA+GGG - chr3_4:71206394-71206413 Msa0519220:CDS 15.0%
!! TCAAAAAATTTCATAGTTAT+TGG - chr3_4:71207202-71207221 Msa0519220:intron 15.0%
!!! TATGATTTATATTTTAAGCT+CGG + chr3_4:71207303-71207322 None:intergenic 15.0%
!!! GGTTTTTTATTATAAGATGA+AGG - chr3_4:71206393-71206412 Msa0519220:CDS 20.0%
!! TGAGGTTATTATAATCTAAT+GGG - chr3_4:71206999-71207018 Msa0519220:intron 20.0%
!!! AACTATGAAATTTTTTGACT+AGG + chr3_4:71207200-71207219 None:intergenic 20.0%
!! GAGCTTAAAATATAAATCAT+AGG - chr3_4:71207302-71207321 Msa0519220:intron 20.0%
!!! TTTTAAAAAAGGTTTGTGTT+TGG - chr3_4:71207541-71207560 Msa0519220:intron 20.0%
!! TGCATTAAAGAAATCTATAT+TGG - chr3_4:71207576-71207595 Msa0519220:CDS 20.0%
!!! AATTCTCTTTTTTTTCTGTT+TGG - chr3_4:71207697-71207716 Msa0519220:intron 20.0%
!!! AATATTGTTATTCATTTGCA+AGG - chr3_4:71207726-71207745 Msa0519220:intron 20.0%
!! ATTATAAAATTAAACAGAGG+GGG + chr3_4:71207948-71207967 None:intergenic 20.0%
!! CATTATAAAATTAAACAGAG+GGG + chr3_4:71207949-71207968 None:intergenic 20.0%
!! GCATTATAAAATTAAACAGA+GGG + chr3_4:71207950-71207969 None:intergenic 20.0%
!! AGCATTATAAAATTAAACAG+AGG + chr3_4:71207951-71207970 None:intergenic 20.0%
!!! AAACAATTTTCTTTTCCTTT+TGG - chr3_4:71208071-71208090 Msa0519220:CDS 20.0%
!!! TATGTTAAAAACATTTTACC+TGG + chr3_4:71208214-71208233 None:intergenic 20.0%
!!! GCATTTTGATTAATAATCAT+TGG - chr3_4:71208268-71208287 Msa0519220:CDS 20.0%
!! ACCCTAATTTATAAATTGAT+TGG - chr3_4:71208458-71208477 Msa0519220:CDS 20.0%
!! GCCAATCAATTTATAAATTA+GGG + chr3_4:71208462-71208481 None:intergenic 20.0%
!! TGCCAATCAATTTATAAATT+AGG + chr3_4:71208463-71208482 None:intergenic 20.0%
!! AAAACAAACATAAAAAAGTC+TGG + chr3_4:71208510-71208529 None:intergenic 20.0%
!! AGATCCAATTAAATTATATC+TGG - chr3_4:71208566-71208585 Msa0519220:exon 20.0%
!! ATTGTTGTGTTTTGTGTTTA+AGG - chr3_4:71206568-71206587 Msa0519220:intron 25.0%
!!! ATCTTGGTTTTTTGTTTGTT+TGG - chr3_4:71206728-71206747 Msa0519220:intron 25.0%
!! ACAAATTAAAGGAAGCATAT+AGG + chr3_4:71206859-71206878 None:intergenic 25.0%
! CTGAGGTTATTATAATCTAA+TGG - chr3_4:71206998-71207017 Msa0519220:intron 25.0%
!!! ATGAAATTTTTTGACTAGGA+GGG + chr3_4:71207196-71207215 None:intergenic 25.0%
!!! TATGAAATTTTTTGACTAGG+AGG + chr3_4:71207197-71207216 None:intergenic 25.0%
! AATTTCATAGTTATTGGAGT+TGG - chr3_4:71207208-71207227 Msa0519220:intron 25.0%
! AATTCTAACTGCAGAAAATT+TGG - chr3_4:71207375-71207394 Msa0519220:intron 25.0%
!!! AAGAGCGTATATCTATTTTA+CGG + chr3_4:71207403-71207422 None:intergenic 25.0%
! AACTGCAAATATATGGATAT+TGG - chr3_4:71207478-71207497 Msa0519220:intron 25.0%
! TTTCATGGTTAAGTTATTGT+GGG - chr3_4:71207504-71207523 Msa0519220:intron 25.0%
! TAGTGAATTTAACTCAGAAT+GGG - chr3_4:71207631-71207650 Msa0519220:CDS 25.0%
!! ACTTGCTAGAGAAAAAAAAA+AGG - chr3_4:71207889-71207908 Msa0519220:CDS 25.0%
! TTATTCATCTGCAACAAATT+TGG - chr3_4:71207913-71207932 Msa0519220:CDS 25.0%
!! ATTTTCTTTTCCTTTTGGAT+AGG - chr3_4:71208076-71208095 Msa0519220:CDS 25.0%
!!! ACAGAAAAATGTTCTGAAAA+GGG + chr3_4:71208244-71208263 None:intergenic 25.0%
! AACTCAGATTATGATCAATT+TGG + chr3_4:71208314-71208333 None:intergenic 25.0%
! AATCTGAGTTAAGCTATATT+TGG - chr3_4:71208324-71208343 Msa0519220:CDS 25.0%
!!! GTTTTTTATGTCTCATGATT+TGG - chr3_4:71208525-71208544 Msa0519220:CDS 25.0%
! ATTTGGATATATTGTCTGAA+TGG - chr3_4:71208542-71208561 Msa0519220:CDS 25.0%
! TTTGGATATATTGTCTGAAT+GGG - chr3_4:71208543-71208562 Msa0519220:CDS 25.0%
! TATTTGGCTGAGTTTAAGAT+TGG - chr3_4:71206430-71206449 Msa0519220:CDS 30.0%
! AATCTTATAGGATGAGTTGA+TGG + chr3_4:71206614-71206633 None:intergenic 30.0%
ATCAACTCATCCTATAAGAT+TGG - chr3_4:71206613-71206632 Msa0519220:intron 30.0%
TCAACTCATCCTATAAGATT+GGG - chr3_4:71206614-71206633 Msa0519220:intron 30.0%
TAAAATTGCTTGACCAAACA+AGG + chr3_4:71206935-71206954 None:intergenic 30.0%
TCAACATAACAGAATCTTTG+TGG + chr3_4:71206960-71206979 None:intergenic 30.0%
AAATTCAACACTAATTGCTG+AGG - chr3_4:71206981-71207000 Msa0519220:intron 30.0%
CATCCTTTCATAAGATACAT+AGG + chr3_4:71207112-71207131 None:intergenic 30.0%
AAGAAATTCACAGCATATCT+AGG + chr3_4:71207152-71207171 None:intergenic 30.0%
! TATACGCTCTTTCTTTTACA+TGG - chr3_4:71207412-71207431 Msa0519220:intron 30.0%
ATTTGCAGTTAGACTACTAT+GGG + chr3_4:71207468-71207487 None:intergenic 30.0%
TATTTGCAGTTAGACTACTA+TGG + chr3_4:71207469-71207488 None:intergenic 30.0%
GTAGTCTAACTGCAAATATA+TGG - chr3_4:71207471-71207490 Msa0519220:intron 30.0%
! TATGGATATTGGTAGTTTCA+TGG - chr3_4:71207489-71207508 Msa0519220:intron 30.0%
GTTTCATGGTTAAGTTATTG+TGG - chr3_4:71207503-71207522 Msa0519220:intron 30.0%
TTCATGGTTAAGTTATTGTG+GGG - chr3_4:71207505-71207524 Msa0519220:intron 30.0%
GTAGTGAATTTAACTCAGAA+TGG - chr3_4:71207630-71207649 Msa0519220:CDS 30.0%
AGTGAATTTAACTCAGAATG+GGG - chr3_4:71207632-71207651 Msa0519220:CDS 30.0%
AGAATTCTCTCTTTACTCTT+TGG - chr3_4:71207814-71207833 Msa0519220:intron 30.0%
AAAGAAAAGAGAAACACAGA+AGG + chr3_4:71208032-71208051 None:intergenic 30.0%
!! GACAGAAAAATGTTCTGAAA+AGG + chr3_4:71208245-71208264 None:intergenic 30.0%
! GATCAATTTGGAGCAATATT+AGG + chr3_4:71208302-71208321 None:intergenic 30.0%
ATTTGTGATATAGTGTCGTA+TGG - chr3_4:71208483-71208502 Msa0519220:CDS 30.0%
TGCGCCAGATATAATTTAAT+TGG + chr3_4:71208573-71208592 None:intergenic 30.0%
AAAGAGAGAAGAGAGAATCA+TGG - chr3_4:71205991-71206010 Msa0519220:three_prime_UTR 35.0%
AAGAGAGAAGAGAGAATCAT+GGG - chr3_4:71205992-71206011 Msa0519220:three_prime_UTR 35.0%
!! TGTTCTCTGTTTAGGTTTTC+TGG + chr3_4:71206028-71206047 None:intergenic 35.0%
ACACATACTGTTCTCTGTTT+AGG + chr3_4:71206036-71206055 None:intergenic 35.0%
CGTTAACTCTGATTCAACTT+TGG + chr3_4:71206302-71206321 None:intergenic 35.0%
TCAGAGTTAACGAATGTTTG+TGG - chr3_4:71206310-71206329 Msa0519220:intron 35.0%
GAATGTTTGTGGTAGTATTC+TGG - chr3_4:71206321-71206340 Msa0519220:intron 35.0%
TGCTTCTTCAAGTGAAAGTA+AGG - chr3_4:71206372-71206391 Msa0519220:CDS 35.0%
AGATGAAGGGTGATTATCAT+AGG - chr3_4:71206407-71206426 Msa0519220:CDS 35.0%
GGGTGATTATCATAGGTATT+TGG - chr3_4:71206414-71206433 Msa0519220:CDS 35.0%
TCATCCTATAAGATTGGGTT+TGG - chr3_4:71206619-71206638 Msa0519220:intron 35.0%
CAGATTAACACAAACCTGTT+TGG + chr3_4:71206708-71206727 None:intergenic 35.0%
GGTTTGTGTTAATCTGATCT+TGG - chr3_4:71206712-71206731 Msa0519220:intron 35.0%
! AGAAGTTTTCTGACCTTGTT+TGG - chr3_4:71206919-71206938 Msa0519220:intron 35.0%
TGTCAATTGCTCATTCTTAG+TGG + chr3_4:71207036-71207055 None:intergenic 35.0%
GAATGAGCAATTGACATGTT+TGG - chr3_4:71207040-71207059 Msa0519220:intron 35.0%
! GTAAGAAATCCGTTTGACTT+TGG - chr3_4:71207078-71207097 Msa0519220:intron 35.0%
GTGCCTATGTATCTTATGAA+AGG - chr3_4:71207106-71207125 Msa0519220:intron 35.0%
TTCTGATTTACACACTGTGT+TGG - chr3_4:71207340-71207359 Msa0519220:intron 35.0%
TATGGGTTCATTGTTCATTC+AGG + chr3_4:71207451-71207470 None:intergenic 35.0%
! TAAAAGTTTGCTCATGAAGC+TGG - chr3_4:71207602-71207621 Msa0519220:CDS 35.0%
! AAAAGTTTGCTCATGAAGCT+GGG - chr3_4:71207603-71207622 Msa0519220:CDS 35.0%
ATTAAACAGAGGGGGAAAAA+AGG + chr3_4:71207940-71207959 None:intergenic 35.0%
!! AAGAGTGTTGTTTACCATAC+TGG - chr3_4:71207972-71207991 Msa0519220:intron 35.0%
! ACTTGATAACACAACCAGTA+TGG + chr3_4:71207989-71208008 None:intergenic 35.0%
TATAAGTGTGCTGTCTTTGT+AGG + chr3_4:71208147-71208166 None:intergenic 35.0%
!! GAAAAATGTTCTGAAAAGGG+TGG + chr3_4:71208241-71208260 None:intergenic 35.0%
! AAGCTATATTTGGCTTATGC+AGG - chr3_4:71208334-71208353 Msa0519220:CDS 35.0%
TCAACCTATAAGGGATATCA+AGG + chr3_4:71208374-71208393 None:intergenic 35.0%
! TGATATCCCTTATAGGTTGA+CGG - chr3_4:71208374-71208393 Msa0519220:CDS 35.0%
TTCATGCAGAAGCTTGTAGT+GGG - chr3_4:71206106-71206125 Msa0519220:three_prime_UTR 40.0%
CGTTTCTTCGATTGAACAGA+AGG - chr3_4:71206225-71206244 Msa0519220:intron 40.0%
TCGATTGAACAGAAGGAAGA+AGG - chr3_4:71206232-71206251 Msa0519220:intron 40.0%
AGATCATGTTGTGCTTGTGA+AGG - chr3_4:71206267-71206286 Msa0519220:intron 40.0%
!! TGGTAGTATTCTGGAGTTGT+TGG - chr3_4:71206330-71206349 Msa0519220:intron 40.0%
CTTTCACTTGAAGAAGCAGA+AGG + chr3_4:71206370-71206389 None:intergenic 40.0%
TGAGAAAAAATCTGCTGCTG+AGG - chr3_4:71206456-71206475 Msa0519220:CDS 40.0%
GTTTAAGGATATTGCTGCTG+CGG - chr3_4:71206583-71206602 Msa0519220:intron 40.0%
AGAGCCAAACCCAATCTTAT+AGG + chr3_4:71206626-71206645 None:intergenic 40.0%
ATCTGACAAAGCTTGTGACA+TGG - chr3_4:71206682-71206701 Msa0519220:intron 40.0%
GCACAAACACCAAAGTCAAA+CGG + chr3_4:71207090-71207109 None:intergenic 40.0%
ATGAAAGGATGTGTGAAAGC+TGG - chr3_4:71207121-71207140 Msa0519220:intron 40.0%
! CTCTTTCTTTTACATGGCTG+TGG - chr3_4:71207418-71207437 Msa0519220:intron 40.0%
! TCCTTTTGGATAGGCTTTTG+AGG - chr3_4:71208085-71208104 Msa0519220:CDS 40.0%
TCCTCAAAAGCCTATCCAAA+AGG + chr3_4:71208089-71208108 None:intergenic 40.0%
ATTGCTGAACTGGACACATT+AGG - chr3_4:71208113-71208132 Msa0519220:CDS 40.0%
TGGAGCAATATTAGGAAGAG+AGG + chr3_4:71208294-71208313 None:intergenic 40.0%
TGAGCCTTGATATCCCTTAT+AGG - chr3_4:71208367-71208386 Msa0519220:CDS 40.0%
! GATATCCCTTATAGGTTGAC+GGG - chr3_4:71208375-71208394 Msa0519220:CDS 40.0%
TACAACCCGTCAACCTATAA+GGG + chr3_4:71208383-71208402 None:intergenic 40.0%
ATACAACCCGTCAACCTATA+AGG + chr3_4:71208384-71208403 None:intergenic 40.0%
! TTGTATTCTTCCTCTGAAGG+AGG - chr3_4:71208398-71208417 Msa0519220:CDS 40.0%
AGAGAAGAGAGAATCATGGG+TGG - chr3_4:71205995-71206014 Msa0519220:three_prime_UTR 45.0%
! CTTGTTCTGCGAGTTTTGCT+AGG + chr3_4:71206060-71206079 None:intergenic 45.0%
CACTACAAGCTTCTGCATGA+AGG + chr3_4:71206107-71206126 None:intergenic 45.0%
CTTCATGCAGAAGCTTGTAG+TGG - chr3_4:71206105-71206124 Msa0519220:three_prime_UTR 45.0%
TCATGCAGAAGCTTGTAGTG+GGG - chr3_4:71206107-71206126 Msa0519220:three_prime_UTR 45.0%
TCTTGTAAGCGACGGATATG+AGG + chr3_4:71206171-71206190 None:intergenic 45.0%
GATCACGTTCTTGTAAGCGA+CGG + chr3_4:71206179-71206198 None:intergenic 45.0%
GTCGCTTACAAGAACGTGAT+CGG - chr3_4:71206178-71206197 Msa0519220:three_prime_UTR 45.0%
GTTGTCTTACAAAGCTGCAC+AGG - chr3_4:71206486-71206505 Msa0519220:intron 45.0%
CAGAATGGGGAAATTGCACA+TGG - chr3_4:71207645-71207664 Msa0519220:CDS 45.0%
ATGGGGAAATTGCACATGGA+AGG - chr3_4:71207649-71207668 Msa0519220:CDS 45.0%
TGAGGAAGCAATTGCTGAAC+TGG - chr3_4:71208103-71208122 Msa0519220:CDS 45.0%
CTGGACATCAGAAGTCCAAA+GGG + chr3_4:71208195-71208214 None:intergenic 45.0%
GATATCAAGGCTCATCTAGC+TGG + chr3_4:71208361-71208380 None:intergenic 45.0%
GGGTTGTATTCTTCCTCTGA+AGG - chr3_4:71208395-71208414 Msa0519220:CDS 45.0%
! TATTCTTCCTCTGAAGGAGG+TGG - chr3_4:71208401-71208420 Msa0519220:CDS 45.0%
! ATTCTTCCTCTGAAGGAGGT+GGG - chr3_4:71208402-71208421 Msa0519220:CDS 45.0%
!!! TTTATTATATTGAAAATTTT+AGG - chr3_4:71206885-71206904 Msa0519220:intron 5.0%
!!! AACTTATAATTTTTTAAAAA+AGG - chr3_4:71207530-71207549 Msa0519220:intron 5.0%
AGAACAAGCTGAACGCTACG+AGG - chr3_4:71206072-71206091 Msa0519220:three_prime_UTR 50.0%
!! GCTAAGCTCTGATGATGGTG+TGG + chr3_4:71206134-71206153 None:intergenic 50.0%
! TCGACGCTAAGCTCTGATGA+TGG + chr3_4:71206139-71206158 None:intergenic 50.0%
AGCTTGTGACATGGCCAAAC+AGG - chr3_4:71206691-71206710 Msa0519220:intron 50.0%
TGAGAGACAACCTCACCCTT+TGG - chr3_4:71208177-71208196 Msa0519220:CDS 50.0%
CATCAGAAGTCCAAAGGGTG+AGG + chr3_4:71208190-71208209 None:intergenic 50.0%
CCTGGACATCAGAAGTCCAA+AGG + chr3_4:71208196-71208215 None:intergenic 50.0%
CCTTTGGACTTCTGATGTCC+AGG - chr3_4:71208193-71208212 Msa0519220:CDS 50.0%
AGCTGAACGCTACGAGGAGA+TGG - chr3_4:71206078-71206097 Msa0519220:three_prime_UTR 55.0%
! CAGAGCTTAGCGTCGAAGAG+AGG - chr3_4:71206143-71206162 Msa0519220:three_prime_UTR 55.0%
TCATAGCCCACCTCCTTCAG+AGG + chr3_4:71208411-71208430 None:intergenic 55.0%
TCGGATCGCTACGTGCTGCG+TGG - chr3_4:71206197-71206216 Msa0519220:exon 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 71205959 71208617 71205959 ID=Msa0519220;Name=Msa0519220
chr3_4 mRNA 71205959 71208617 71205959 ID=Msa0519220-mRNA-1;Parent=Msa0519220;Name=Msa0519220-mRNA-1;_AED=0.09;_eAED=0.09;_QI=51|0.5|0.8|0.8|1|1|5|241|284
chr3_4 exon 71205959 71206220 71205959 ID=Msa0519220-mRNA-1:exon:19561;Parent=Msa0519220-mRNA-1
chr3_4 exon 71206362 71206478 71206362 ID=Msa0519220-mRNA-1:exon:19560;Parent=Msa0519220-mRNA-1
chr3_4 exon 71207574 71207669 71207574 ID=Msa0519220-mRNA-1:exon:19559;Parent=Msa0519220-mRNA-1
chr3_4 exon 71207864 71207986 71207864 ID=Msa0519220-mRNA-1:exon:19558;Parent=Msa0519220-mRNA-1
chr3_4 exon 71208069 71208617 71208069 ID=Msa0519220-mRNA-1:exon:19557;Parent=Msa0519220-mRNA-1
chr3_4 five_prime_UTR 71208567 71208617 71208567 ID=Msa0519220-mRNA-1:five_prime_utr;Parent=Msa0519220-mRNA-1
chr3_4 CDS 71208069 71208566 71208069 ID=Msa0519220-mRNA-1:cds;Parent=Msa0519220-mRNA-1
chr3_4 CDS 71207864 71207986 71207864 ID=Msa0519220-mRNA-1:cds;Parent=Msa0519220-mRNA-1
chr3_4 CDS 71207574 71207669 71207574 ID=Msa0519220-mRNA-1:cds;Parent=Msa0519220-mRNA-1
chr3_4 CDS 71206362 71206478 71206362 ID=Msa0519220-mRNA-1:cds;Parent=Msa0519220-mRNA-1
chr3_4 CDS 71206200 71206220 71206200 ID=Msa0519220-mRNA-1:cds;Parent=Msa0519220-mRNA-1
chr3_4 three_prime_UTR 71205959 71206199 71205959 ID=Msa0519220-mRNA-1:three_prime_utr;Parent=Msa0519220-mRNA-1
Gene Sequence

>Msa0519220

ATGGGTGGTGCGATTCCAGAAAACCTAAACAGAGAACAGTATGTGTACCTAGCAAAACTCGCAGAACAAGCTGAACGCTACGAGGAGATGGTCTCCTTCATGCAGAAGCTTGTAGTGGGGTCCACACCATCATCAGAGCTTAGCGTCGAAGAGAGGAACCTCATATCCGTCGCTTACAAGAACGTGATCGGATCGCTACGTGCTGCGTGGAGAATCGTTTCTTCGATTGAACAGAAGGAAGAAGGTAGAAAGAACGAAGATCATGTTGTGCTTGTGAAGGATTACAGATCCAAAGTTGAATCAGAGTTAACGAATGTTTGTGGTAGTATTCTGGAGTTGTTGGATTCGAATCTTATACCTTCTGCTTCTTCAAGTGAAAGTAAGGTTTTTTATTATAAGATGAAGGGTGATTATCATAGGTATTTGGCTGAGTTTAAGATTGGTGATGAGAAAAAATCTGCTGCTGAGGATACTATGTTGTCTTACAAAGCTGCACAGGATATTGCTGCTGCGGATCTTCCATCAACTCATCCTATAAGATTGGGTTTGGCTCTGAATTTCTCTGTTTTCTATTATGAAATTCTCAATCAATCTGACAAAGCTTGTGACATGGCCAAACAGGTCAACTTGATAAGAAGTTTTCTGACCTTGTTTGGTCAAGCAATTTTAAGCCACAAAGATTCTGTTATGTTGAAAAATTCAACACTAATTGCTGAGGCTTTTGAGGAAGCAATTGCTGAACTGGACACATTAGGAGAAGAATCCTACAAAGACAGCACACTTATAATGCAACTTTTGAGAGACAACCTCACCCTTTGGACTTCTGATGTCCAGGACCAGCTAGATGAGCCTTGA

Protein sequence

>Msa0519220

MGGAIPENLNREQYVYLAKLAEQAERYEEMVSFMQKLVVGSTPSSELSVEERNLISVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEDHVVLVKDYRSKVESELTNVCGSILELLDSNLIPSASSSESKVFYYKMKGDYHRYLAEFKIGDEKKSAAEDTMLSYKAAQDIAAADLPSTHPIRLGLALNFSVFYYEILNQSDKACDMAKQVNLIRSFLTLFGQAILSHKDSVMLKNSTLIAEAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDVQDQLDEP*