Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0081520 | Msa0263290 | 0.800286 | 1.547597e-48 | -8.615850e-47 |
| Msa0221640 | Msa0263290 | 0.838570 | 2.658081e-57 | -8.615850e-47 |
| Msa0263290 | Msa0265850 | 0.810084 | 1.373896e-50 | -8.615850e-47 |
| Msa0263290 | Msa0300270 | 0.826715 | 2.330057e-54 | -8.615850e-47 |
| Msa0263290 | Msa0300320 | 0.821202 | 4.577476e-53 | -8.615850e-47 |
| Msa0263290 | Msa0300860 | 0.870022 | 1.997172e-66 | -8.615850e-47 |
| Msa0263290 | Msa0337700 | 0.802166 | 6.381717e-49 | -8.615850e-47 |
| Msa0263290 | Msa0338400 | 0.849884 | 2.427983e-60 | -8.615850e-47 |
| Msa0263290 | Msa0371170 | 0.801835 | 7.463784e-49 | -8.615850e-47 |
| Msa0263290 | Msa0428370 | 0.801605 | 8.323130e-49 | -8.615850e-47 |
| Msa0263290 | Msa0795870 | 0.805488 | 1.303061e-49 | -8.615850e-47 |
| Msa0263290 | Msa0861510 | 0.800670 | 1.292596e-48 | -8.615850e-47 |
| Msa0263290 | Msa0861600 | 0.803068 | 4.158165e-49 | -8.615850e-47 |
| Msa0263290 | Msa1200890 | 0.825147 | 5.492343e-54 | -8.615850e-47 |
| Msa0263290 | Msa1320670 | 0.803763 | 2.984987e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 86 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAACATTGTTTGATAAAT+TGG | 0.117378 | 2_2:-62545720 | Msa0263290:three_prime_UTR |
| CCTTGCACATGACAGAAATT+TGG | 0.236291 | 2_2:-62546809 | Msa0263290:three_prime_UTR |
| TGTTCTGAATCTGTTCTTCT+TGG | 0.252805 | 2_2:+62546665 | None:intergenic |
| CTCTTTCAACTCCTCAATTT+CGG | 0.259232 | 2_2:+62546555 | None:intergenic |
| AATTTAAGAAGGAACTTAAA+AGG | 0.271917 | 2_2:-62546426 | Msa0263290:three_prime_UTR |
| GAGGAAGTTGCAGCCGAAAT+AGG | 0.279931 | 2_2:-62546265 | Msa0263290:three_prime_UTR |
| AGGAAGTTGCAGCCGAAATA+GGG | 0.344945 | 2_2:-62546264 | Msa0263290:three_prime_UTR |
| AGCCTTAGCCGCCCCTATTT+CGG | 0.345352 | 2_2:+62546252 | None:intergenic |
| CGCTGAGAGATCAATGTCTA+TGG | 0.352252 | 2_2:-62546011 | Msa0263290:three_prime_UTR |
| TCAAAATTTGCAACTTAAAG+AGG | 0.372117 | 2_2:-62547165 | Msa0263290:CDS |
| AGCTGCACAATTGGCGAATA+CGG | 0.373665 | 2_2:-62546137 | Msa0263290:three_prime_UTR |
| GGAAATGGAATCTGAAAGAT+TGG | 0.377371 | 2_2:-62546788 | Msa0263290:three_prime_UTR |
| AAATCGAGTTTCGTTCTTTG+AGG | 0.377376 | 2_2:-62546738 | Msa0263290:three_prime_UTR |
| GGATCACTTTCATAGCAAAA+AGG | 0.391666 | 2_2:+62545763 | None:intergenic |
| CGAATATGTAGCGGCATTGA+AGG | 0.402492 | 2_2:-62546398 | Msa0263290:three_prime_UTR |
| AAGTAATATTGTGTTGTTAC+CGG | 0.407669 | 2_2:-62545806 | Msa0263290:three_prime_UTR |
| AATGGTGAACCACTTATTAC+AGG | 0.410834 | 2_2:-62548347 | Msa0263290:CDS |
| TACCCGTTCAATCAACTCAT+AGG | 0.414385 | 2_2:+62546624 | None:intergenic |
| GATTTGACTCTTCGCAATCT+TGG | 0.421704 | 2_2:+62546947 | None:intergenic |
| GAAAGAGAAACTGATGGATA+AGG | 0.425852 | 2_2:-62546539 | Msa0263290:three_prime_UTR |
| ACTCTTCGCAATCTTGGAGC+TGG | 0.432064 | 2_2:+62546953 | None:intergenic |
| GTCAAATCAGGCTCAACCTT+TGG | 0.433135 | 2_2:-62546932 | Msa0263290:three_prime_UTR |
| AGGTTCACATTCACACTTGA+TGG | 0.434703 | 2_2:-62546298 | Msa0263290:three_prime_UTR |
| TTCAGAACACGGTGAAGATT+AGG | 0.437521 | 2_2:-62546651 | Msa0263290:three_prime_UTR |
| GAGTCAGAGGGAATCTGAAT+TGG | 0.439408 | 2_2:-62546590 | Msa0263290:three_prime_UTR |
| GAAGTTGGAAGCTGCACAAT+TGG | 0.439716 | 2_2:-62546146 | Msa0263290:three_prime_UTR |
| TCATGTATTCTGCTGCTGCT+AGG | 0.442631 | 2_2:+62547197 | None:intergenic |
| TTCTTCTTGGAATTTAATCT+CGG | 0.445092 | 2_2:+62546678 | None:intergenic |
| AGCCGAAATAGGGGCGGCTA+AGG | 0.446269 | 2_2:-62546254 | Msa0263290:three_prime_UTR |
| AAGAGGATTTGAAGAAGGTA+AGG | 0.450428 | 2_2:-62547148 | Msa0263290:CDS |
| AGAAAATGAAATGCTGAAGT+TGG | 0.453858 | 2_2:-62546332 | Msa0263290:three_prime_UTR |
| GGCGAGGGTGACTGAGAAGT+TGG | 0.459007 | 2_2:-62546161 | Msa0263290:three_prime_UTR |
| TGGCATACCCTCTGAGTTTG+AGG | 0.466776 | 2_2:+62548206 | None:intergenic |
| CATGTATTCTGCTGCTGCTA+GGG | 0.469716 | 2_2:+62547198 | None:intergenic |
| GAAGGGTGAAATGATGGATA+AGG | 0.474988 | 2_2:-62546380 | Msa0263290:three_prime_UTR |
| ACATGACAGAAATTTGGAAA+TGG | 0.476384 | 2_2:-62546803 | Msa0263290:three_prime_UTR |
| CCAAATTTCTGTCATGTGCA+AGG | 0.486872 | 2_2:+62546809 | None:intergenic |
| TGCCTATGAGTTGATTGAAC+GGG | 0.490287 | 2_2:-62546626 | Msa0263290:three_prime_UTR |
| GCTGCTGCTATGTTCTCAGC+AGG | 0.495964 | 2_2:-62546049 | Msa0263290:three_prime_UTR |
| AGATTGCGAAGAGTCAAATC+AGG | 0.512278 | 2_2:-62546944 | Msa0263290:three_prime_UTR |
| TGAAGAAGATTGGTGTCTTG+TGG | 0.514360 | 2_2:-62545886 | Msa0263290:three_prime_UTR |
| TAAAATCAGAATTGAGTCAG+AGG | 0.516246 | 2_2:-62546603 | Msa0263290:three_prime_UTR |
| TATCAATTCAAATTGAACCT+TGG | 0.521085 | 2_2:+62547086 | None:intergenic |
| ACTTAAAGAGGATTTGAAGA+AGG | 0.523150 | 2_2:-62547153 | Msa0263290:CDS |
| CAATAAAGACCTGTAATAAG+TGG | 0.526909 | 2_2:+62548338 | None:intergenic |
| GGGAATGTGTTGAAGAAGAT+TGG | 0.528052 | 2_2:-62545896 | Msa0263290:three_prime_UTR |
| GGCATTGAAGGGTGAAATGA+TGG | 0.528551 | 2_2:-62546386 | Msa0263290:three_prime_UTR |
| GAATGAGTTGCAAGGTATTG+TGG | 0.528922 | 2_2:-62546515 | Msa0263290:three_prime_UTR |
| GGTCTGAGGTTGAACTACTT+AGG | 0.529666 | 2_2:-62546717 | Msa0263290:three_prime_UTR |
| CGAGACTTTGCGACAACTTG+AGG | 0.531400 | 2_2:-62546905 | Msa0263290:three_prime_UTR |
| AACAACACAATATTACTTGA+CGG | 0.531971 | 2_2:+62545811 | None:intergenic |
| CGCAAAGTCTCGTTCACCAA+AGG | 0.532285 | 2_2:+62546916 | None:intergenic |
| CAGCAGCAGAATACATGAAG+TGG | 0.544712 | 2_2:-62547192 | Msa0263290:CDS |
| GTTTCGTTCTTTGAGGTCTG+AGG | 0.547517 | 2_2:-62546731 | Msa0263290:three_prime_UTR |
| TGCTAAATTGAAGATAATGA+AGG | 0.549188 | 2_2:-62546212 | Msa0263290:three_prime_UTR |
| ATTGAAGATAATGAAGGAGG+AGG | 0.554380 | 2_2:-62546206 | Msa0263290:three_prime_UTR |
| TGCTTATTGCATGATTCAGA+CGG | 0.555775 | 2_2:+62547123 | None:intergenic |
| AGAGAAGAGCAATAGTAAGA+TGG | 0.561769 | 2_2:-62546182 | Msa0263290:three_prime_UTR |
| AAGAAAGAAAGCCGAAATTG+AGG | 0.562869 | 2_2:-62546566 | Msa0263290:three_prime_UTR |
| AAAAGAACAAGAATTTAAGA+AGG | 0.565174 | 2_2:-62546437 | Msa0263290:three_prime_UTR |
| ACTTGATGGCATAATGAAAG+AGG | 0.569458 | 2_2:-62546284 | Msa0263290:three_prime_UTR |
| CTAAAGTGCCTCAAACTCAG+AGG | 0.572186 | 2_2:-62548214 | Msa0263290:CDS |
| GGAGTTGAAAGAGAAACTGA+TGG | 0.581396 | 2_2:-62546545 | Msa0263290:three_prime_UTR |
| AGAGGATTTGAAGAAGGTAA+GGG | 0.581443 | 2_2:-62547147 | Msa0263290:CDS |
| AGAGCAATAGTAAGATGGCG+AGG | 0.583720 | 2_2:-62546177 | Msa0263290:three_prime_UTR |
| ATGTTCTCAGCAGGGAACAA+TGG | 0.586344 | 2_2:-62546040 | Msa0263290:three_prime_UTR |
| GGAAGTTGCAGCCGAAATAG+GGG | 0.594864 | 2_2:-62546263 | Msa0263290:three_prime_UTR |
| GAATATGTAGCGGCATTGAA+GGG | 0.599247 | 2_2:-62546397 | Msa0263290:three_prime_UTR |
| AAGAAGCCTCAGAAAACCAC+TGG | 0.599355 | 2_2:-62545863 | Msa0263290:three_prime_UTR |
| TAAATTGAAGATAATGAAGG+AGG | 0.605982 | 2_2:-62546209 | Msa0263290:three_prime_UTR |
| GCAAGCTCATCAAGATGCCA+AGG | 0.608755 | 2_2:-62547103 | Msa0263290:CDS |
| TAAAGTGCCTCAAACTCAGA+GGG | 0.611581 | 2_2:-62548213 | Msa0263290:intron |
| GAGCAATAGTAAGATGGCGA+GGG | 0.612884 | 2_2:-62546176 | Msa0263290:three_prime_UTR |
| TCAAAGTGCAATGTGATCAG+TGG | 0.620907 | 2_2:-62546090 | Msa0263290:three_prime_UTR |
| ATGCCTATGAGTTGATTGAA+CGG | 0.625428 | 2_2:-62546627 | Msa0263290:three_prime_UTR |
| GATAAGGAGAATGAGTTGCA+AGG | 0.626473 | 2_2:-62546523 | Msa0263290:three_prime_UTR |
| AAAATCAGAATTGAGTCAGA+GGG | 0.634007 | 2_2:-62546602 | Msa0263290:three_prime_UTR |
| CTGCTGCTATGTTCTCAGCA+GGG | 0.643065 | 2_2:-62546048 | Msa0263290:three_prime_UTR |
| AAGTGCAATGTGATCAGTGG+AGG | 0.644957 | 2_2:-62546087 | Msa0263290:three_prime_UTR |
| TGAAGTTGGAAATCAACAAG+AGG | 0.659003 | 2_2:-62546318 | Msa0263290:three_prime_UTR |
| GCACTTAATGAATCAACCAG+TGG | 0.659929 | 2_2:+62545847 | None:intergenic |
| AAGGTTAGACGAATATGTAG+CGG | 0.667109 | 2_2:-62546407 | Msa0263290:three_prime_UTR |
| GTATTGTGGATGAGAATGAG+AGG | 0.675827 | 2_2:-62546501 | Msa0263290:three_prime_UTR |
| GCAATGTGATCAGTGGAGGA+AGG | 0.684889 | 2_2:-62546083 | Msa0263290:three_prime_UTR |
| AGAAGAACAGATTCAGAACA+CGG | 0.689139 | 2_2:-62546662 | Msa0263290:three_prime_UTR |
| AGTTGCAGCCGAAATAGGGG+CGG | 0.692601 | 2_2:-62546260 | Msa0263290:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATTCAATTTTCAAAAT+TGG | + | chr2_2:62546181-62546200 | None:intergenic | 10.0% |
| !! | TTTCTATCATATATTAATCA+AGG | - | chr2_2:62545953-62545972 | Msa0263290:three_prime_UTR | 15.0% |
| !! | TTCTATCATATATTAATCAA+GGG | - | chr2_2:62545954-62545973 | Msa0263290:three_prime_UTR | 15.0% |
| !!! | TTTGTTTTAGGTTAATTTAT+TGG | - | chr2_2:62546463-62546482 | Msa0263290:three_prime_UTR | 15.0% |
| !!! | AGAATGTTTTTAAGTTTTAA+AGG | - | chr2_2:62546689-62546708 | Msa0263290:three_prime_UTR | 15.0% |
| !! | ATTTGCAAAGAAATAAAAAT+GGG | - | chr2_2:62548074-62548093 | Msa0263290:intron | 15.0% |
| !! | GTGAACAAAAGAAAAAATTT+CGG | + | chr2_2:62545717-62545736 | None:intergenic | 20.0% |
| !!! | TTGATGATGTTTTATGAAAT+TGG | + | chr2_2:62545852-62545871 | None:intergenic | 20.0% |
| !!! | CGTTTTACATTTATAAACAA+GGG | + | chr2_2:62546078-62546097 | None:intergenic | 20.0% |
| !!! | ACGTTTTACATTTATAAACA+AGG | + | chr2_2:62546079-62546098 | None:intergenic | 20.0% |
| !!! | TTTGAATGTTACTTTGTTTT+AGG | - | chr2_2:62546451-62546470 | Msa0263290:three_prime_UTR | 20.0% |
| !!! | ACAGAGTATTTTCATATATT+TGG | - | chr2_2:62546563-62546582 | Msa0263290:three_prime_UTR | 20.0% |
| !! | TGAACAAATTTCAAGAATTT+GGG | + | chr2_2:62546730-62546749 | None:intergenic | 20.0% |
| !! | AAAAGAACAAGAATTTAAGA+AGG | - | chr2_2:62547553-62547572 | Msa0263290:intron | 20.0% |
| !! | AATTTAAGAAGGAACTTAAA+AGG | - | chr2_2:62547564-62547583 | Msa0263290:intron | 20.0% |
| !! | GATTTGCAAAGAAATAAAAA+TGG | - | chr2_2:62548073-62548092 | Msa0263290:intron | 20.0% |
| !!! | CAAAACAGTTTTAAATCTAA+GGG | + | chr2_2:62548251-62548270 | None:intergenic | 20.0% |
| !!! | ACAAAACAGTTTTAAATCTA+AGG | + | chr2_2:62548252-62548271 | None:intergenic | 20.0% |
| !! | GTTAACATTGTTTGATAAAT+TGG | - | chr2_2:62548270-62548289 | Msa0263290:CDS | 20.0% |
| !!! | TTTTAGAACTTATTAGTTCA+TGG | - | chr2_2:62548309-62548328 | Msa0263290:CDS | 20.0% |
| ! | GAAAAAATTTCGGTGAATAA+CGG | + | chr2_2:62545707-62545726 | None:intergenic | 25.0% |
| ! | TGATAGAAAAACATGATACA+AGG | + | chr2_2:62545942-62545961 | None:intergenic | 25.0% |
| !!! | AGACTTCACTCTAAAATTAA+AGG | + | chr2_2:62546130-62546149 | None:intergenic | 25.0% |
| ! | TGTGATACTTTACAAAATTC+TGG | - | chr2_2:62546153-62546172 | Msa0263290:three_prime_UTR | 25.0% |
| ! | GTGATACTTTACAAAATTCT+GGG | - | chr2_2:62546154-62546173 | Msa0263290:three_prime_UTR | 25.0% |
| !!! | CAATTGAGTTTATTTTTGTG+AGG | - | chr2_2:62546384-62546403 | Msa0263290:three_prime_UTR | 25.0% |
| !!! | TATTTTTGTGAGGATCAAAT+TGG | - | chr2_2:62546394-62546413 | Msa0263290:three_prime_UTR | 25.0% |
| ! | CTGAACAAATTTCAAGAATT+TGG | + | chr2_2:62546731-62546750 | None:intergenic | 25.0% |
| ! | TCAAAATTTGCAACTTAAAG+AGG | - | chr2_2:62546825-62546844 | Msa0263290:three_prime_UTR | 25.0% |
| ! | TATCAATTCAAATTGAACCT+TGG | + | chr2_2:62546907-62546926 | None:intergenic | 25.0% |
| ! | TTCTTCTTGGAATTTAATCT+CGG | + | chr2_2:62547315-62547334 | None:intergenic | 25.0% |
| ! | TGCTAAATTGAAGATAATGA+AGG | - | chr2_2:62547778-62547797 | Msa0263290:intron | 25.0% |
| ! | TAAATTGAAGATAATGAAGG+AGG | - | chr2_2:62547781-62547800 | Msa0263290:intron | 25.0% |
| ! | AACAACACAATATTACTTGA+CGG | + | chr2_2:62548182-62548201 | None:intergenic | 25.0% |
| !! | AAGTAATATTGTGTTGTTAC+CGG | - | chr2_2:62548184-62548203 | Msa0263290:intron | 25.0% |
| CAATAAAGACCTGTAATAAG+TGG | + | chr2_2:62545655-62545674 | None:intergenic | 30.0% | |
| AAACATCATCAAACGACAAA+AGG | - | chr2_2:62545860-62545879 | Msa0263290:three_prime_UTR | 30.0% | |
| AAGTCAAAGATTAAAGCTGT+TGG | + | chr2_2:62546317-62546336 | None:intergenic | 30.0% | |
| ! | ACAGCTTTAATCTTTGACTT+TGG | - | chr2_2:62546317-62546336 | Msa0263290:three_prime_UTR | 30.0% |
| ! | TTGTTACTTCGTGATGTTAT+TGG | - | chr2_2:62546359-62546378 | Msa0263290:three_prime_UTR | 30.0% |
| ! | TGTTACTTCGTGATGTTATT+GGG | - | chr2_2:62546360-62546379 | Msa0263290:three_prime_UTR | 30.0% |
| ! | TTTTTCCTTTGATTCCTCAT+TGG | - | chr2_2:62546536-62546555 | Msa0263290:three_prime_UTR | 30.0% |
| ! | TTTTCCTTTGATTCCTCATT+GGG | - | chr2_2:62546537-62546556 | Msa0263290:three_prime_UTR | 30.0% |
| CAAAGAATGTATTAGTCGAT+AGG | + | chr2_2:62546602-62546621 | None:intergenic | 30.0% | |
| ACTTAAAGAGGATTTGAAGA+AGG | - | chr2_2:62546837-62546856 | Msa0263290:three_prime_UTR | 30.0% | |
| ACATGACAGAAATTTGGAAA+TGG | - | chr2_2:62547187-62547206 | Msa0263290:CDS | 30.0% | |
| TAAAATCAGAATTGAGTCAG+AGG | - | chr2_2:62547387-62547406 | Msa0263290:intron | 30.0% | |
| AAAATCAGAATTGAGTCAGA+GGG | - | chr2_2:62547388-62547407 | Msa0263290:intron | 30.0% | |
| AGAAAATGAAATGCTGAAGT+TGG | - | chr2_2:62547658-62547677 | Msa0263290:intron | 30.0% | |
| ATTGCACAACAAAAATTCTC+CGG | + | chr2_2:62548206-62548225 | None:intergenic | 30.0% | |
| !! | ACACATGTGAGAAGTGTTAA+CGG | + | chr2_2:62546217-62546236 | None:intergenic | 35.0% |
| !! | AAAGCTGTTGGCTTAATACA+AGG | + | chr2_2:62546305-62546324 | None:intergenic | 35.0% |
| ! | GCTTTAATCTTTGACTTTGG+CGG | - | chr2_2:62546320-62546339 | Msa0263290:three_prime_UTR | 35.0% |
| CACGAAGTAACAACAATATG+CGG | + | chr2_2:62546352-62546371 | None:intergenic | 35.0% | |
| ! | GATCTTAGATTTGTTTCGCA+GGG | - | chr2_2:62546416-62546435 | Msa0263290:three_prime_UTR | 35.0% |
| ATTTGTTTCGCAGGGATTTA+AGG | - | chr2_2:62546424-62546443 | Msa0263290:three_prime_UTR | 35.0% | |
| CAATTACGATTCATTTGTGC+CGG | - | chr2_2:62546497-62546516 | Msa0263290:three_prime_UTR | 35.0% | |
| AAATAAAAGTCTGTCCCATC+CGG | + | chr2_2:62546519-62546538 | None:intergenic | 35.0% | |
| TAATCCCAATGAGGAATCAA+AGG | + | chr2_2:62546544-62546563 | None:intergenic | 35.0% | |
| AATACTCTGTAATCCCAATG+AGG | + | chr2_2:62546553-62546572 | None:intergenic | 35.0% | |
| AAGAGGATTTGAAGAAGGTA+AGG | - | chr2_2:62546842-62546861 | Msa0263290:three_prime_UTR | 35.0% | |
| AGAGGATTTGAAGAAGGTAA+GGG | - | chr2_2:62546843-62546862 | Msa0263290:three_prime_UTR | 35.0% | |
| TGCTTATTGCATGATTCAGA+CGG | + | chr2_2:62546870-62546889 | None:intergenic | 35.0% | |
| GGAAATGGAATCTGAAAGAT+TGG | - | chr2_2:62547202-62547221 | Msa0263290:CDS | 35.0% | |
| AAATCGAGTTTCGTTCTTTG+AGG | - | chr2_2:62547252-62547271 | Msa0263290:intron | 35.0% | |
| ! | TGTTCTGAATCTGTTCTTCT+TGG | + | chr2_2:62547328-62547347 | None:intergenic | 35.0% |
| AGAAGAACAGATTCAGAACA+CGG | - | chr2_2:62547328-62547347 | Msa0263290:intron | 35.0% | |
| !! | ATGCCTATGAGTTGATTGAA+CGG | - | chr2_2:62547363-62547382 | Msa0263290:intron | 35.0% |
| AAGAAAGAAAGCCGAAATTG+AGG | - | chr2_2:62547424-62547443 | Msa0263290:intron | 35.0% | |
| CTCTTTCAACTCCTCAATTT+CGG | + | chr2_2:62547438-62547457 | None:intergenic | 35.0% | |
| ! | GAAAGAGAAACTGATGGATA+AGG | - | chr2_2:62547451-62547470 | Msa0263290:intron | 35.0% |
| AAGGTTAGACGAATATGTAG+CGG | - | chr2_2:62547583-62547602 | Msa0263290:intron | 35.0% | |
| TGAAGTTGGAAATCAACAAG+AGG | - | chr2_2:62547672-62547691 | Msa0263290:intron | 35.0% | |
| ! | ACTTGATGGCATAATGAAAG+AGG | - | chr2_2:62547706-62547725 | Msa0263290:intron | 35.0% |
| ATTGAAGATAATGAAGGAGG+AGG | - | chr2_2:62547784-62547803 | Msa0263290:intron | 35.0% | |
| AGAGAAGAGCAATAGTAAGA+TGG | - | chr2_2:62547808-62547827 | Msa0263290:intron | 35.0% | |
| GGATCACTTTCATAGCAAAA+AGG | + | chr2_2:62548230-62548249 | None:intergenic | 35.0% | |
| ! | TAAAGTGCCTCAAACTCAGA+GGG | - | chr2_2:62545777-62545796 | Msa0263290:three_prime_UTR | 40.0% |
| GTGTTAGTGTCTAGTGAAGA+AGG | + | chr2_2:62545820-62545839 | None:intergenic | 40.0% | |
| ACAAGGAAACACTATACCTC+AGG | + | chr2_2:62545925-62545944 | None:intergenic | 40.0% | |
| ! | GGATCTTAGATTTGTTTCGC+AGG | - | chr2_2:62546415-62546434 | Msa0263290:three_prime_UTR | 40.0% |
| GATTTGACTCTTCGCAATCT+TGG | + | chr2_2:62547046-62547065 | None:intergenic | 40.0% | |
| AGATTGCGAAGAGTCAAATC+AGG | - | chr2_2:62547046-62547065 | Msa0263290:three_prime_UTR | 40.0% | |
| CCAAATTTCTGTCATGTGCA+AGG | + | chr2_2:62547184-62547203 | None:intergenic | 40.0% | |
| CCTTGCACATGACAGAAATT+TGG | - | chr2_2:62547181-62547200 | Msa0263290:CDS | 40.0% | |
| TTCAGAACACGGTGAAGATT+AGG | - | chr2_2:62547339-62547358 | Msa0263290:intron | 40.0% | |
| !! | TGCCTATGAGTTGATTGAAC+GGG | - | chr2_2:62547364-62547383 | Msa0263290:intron | 40.0% |
| TACCCGTTCAATCAACTCAT+AGG | + | chr2_2:62547369-62547388 | None:intergenic | 40.0% | |
| GGAGTTGAAAGAGAAACTGA+TGG | - | chr2_2:62547445-62547464 | Msa0263290:intron | 40.0% | |
| GATAAGGAGAATGAGTTGCA+AGG | - | chr2_2:62547467-62547486 | Msa0263290:intron | 40.0% | |
| !! | GAATGAGTTGCAAGGTATTG+TGG | - | chr2_2:62547475-62547494 | Msa0263290:intron | 40.0% |
| GTATTGTGGATGAGAATGAG+AGG | - | chr2_2:62547489-62547508 | Msa0263290:intron | 40.0% | |
| ! | GAATATGTAGCGGCATTGAA+GGG | - | chr2_2:62547593-62547612 | Msa0263290:intron | 40.0% |
| !! | GAAGGGTGAAATGATGGATA+AGG | - | chr2_2:62547610-62547629 | Msa0263290:intron | 40.0% |
| AGGTTCACATTCACACTTGA+TGG | - | chr2_2:62547692-62547711 | Msa0263290:intron | 40.0% | |
| TCAAAGTGCAATGTGATCAG+TGG | - | chr2_2:62547900-62547919 | Msa0263290:intron | 40.0% | |
| GGGAATGTGTTGAAGAAGAT+TGG | - | chr2_2:62548094-62548113 | Msa0263290:intron | 40.0% | |
| ! | TGAAGAAGATTGGTGTCTTG+TGG | - | chr2_2:62548104-62548123 | Msa0263290:intron | 40.0% |
| ! | AATCAACCAGTGGTTTTCTG+AGG | + | chr2_2:62548136-62548155 | None:intergenic | 40.0% |
| GCACTTAATGAATCAACCAG+TGG | + | chr2_2:62548146-62548165 | None:intergenic | 40.0% | |
| ! | CTAAAGTGCCTCAAACTCAG+AGG | - | chr2_2:62545776-62545795 | Msa0263290:three_prime_UTR | 45.0% |
| TACGATTCATTTGTGCCGGA+TGG | - | chr2_2:62546501-62546520 | Msa0263290:three_prime_UTR | 45.0% | |
| ACGATTCATTTGTGCCGGAT+GGG | - | chr2_2:62546502-62546521 | Msa0263290:three_prime_UTR | 45.0% | |
| CATGTATTCTGCTGCTGCTA+GGG | + | chr2_2:62546795-62546814 | None:intergenic | 45.0% | |
| TCATGTATTCTGCTGCTGCT+AGG | + | chr2_2:62546796-62546815 | None:intergenic | 45.0% | |
| CAGCAGCAGAATACATGAAG+TGG | - | chr2_2:62546798-62546817 | Msa0263290:three_prime_UTR | 45.0% | |
| GTCAAATCAGGCTCAACCTT+TGG | - | chr2_2:62547058-62547077 | Msa0263290:three_prime_UTR | 45.0% | |
| !! | GTTTCGTTCTTTGAGGTCTG+AGG | - | chr2_2:62547259-62547278 | Msa0263290:intron | 45.0% |
| ! | GGTCTGAGGTTGAACTACTT+AGG | - | chr2_2:62547273-62547292 | Msa0263290:intron | 45.0% |
| GAGTCAGAGGGAATCTGAAT+TGG | - | chr2_2:62547400-62547419 | Msa0263290:intron | 45.0% | |
| ! | CGAATATGTAGCGGCATTGA+AGG | - | chr2_2:62547592-62547611 | Msa0263290:intron | 45.0% |
| ! | GGCATTGAAGGGTGAAATGA+TGG | - | chr2_2:62547604-62547623 | Msa0263290:intron | 45.0% |
| AGGAAGTTGCAGCCGAAATA+GGG | - | chr2_2:62547726-62547745 | Msa0263290:intron | 45.0% | |
| AGAGCAATAGTAAGATGGCG+AGG | - | chr2_2:62547813-62547832 | Msa0263290:intron | 45.0% | |
| GAGCAATAGTAAGATGGCGA+GGG | - | chr2_2:62547814-62547833 | Msa0263290:intron | 45.0% | |
| GAAGTTGGAAGCTGCACAAT+TGG | - | chr2_2:62547844-62547863 | Msa0263290:intron | 45.0% | |
| AGCTGCACAATTGGCGAATA+CGG | - | chr2_2:62547853-62547872 | Msa0263290:intron | 45.0% | |
| AAGTGCAATGTGATCAGTGG+AGG | - | chr2_2:62547903-62547922 | Msa0263290:intron | 45.0% | |
| ATGTTCTCAGCAGGGAACAA+TGG | - | chr2_2:62547950-62547969 | Msa0263290:intron | 45.0% | |
| CGCTGAGAGATCAATGTCTA+TGG | - | chr2_2:62547979-62547998 | Msa0263290:intron | 45.0% | |
| AAGAAGCCTCAGAAAACCAC+TGG | - | chr2_2:62548127-62548146 | Msa0263290:intron | 45.0% | |
| !! | ATTGAAATAAAAAAATATAA+GGG | + | chr2_2:62545996-62546015 | None:intergenic | 5.0% |
| !! | TATTGAAATAAAAAAATATA+AGG | + | chr2_2:62545997-62546016 | None:intergenic | 5.0% |
| TGGCATACCCTCTGAGTTTG+AGG | + | chr2_2:62545787-62545806 | None:intergenic | 50.0% | |
| ! | AGAGGGTATGCCATCATCTC+AGG | - | chr2_2:62545794-62545813 | Msa0263290:three_prime_UTR | 50.0% |
| GTGAAGAAGGCCTGAGATGA+TGG | + | chr2_2:62545807-62545826 | None:intergenic | 50.0% | |
| TGATCTACGGTCGGTGACTA+TGG | + | chr2_2:62545887-62545906 | None:intergenic | 50.0% | |
| ! | GTTTCTGGGTGATCTACGGT+CGG | + | chr2_2:62545896-62545915 | None:intergenic | 50.0% |
| !! | CCGTGTTTCTGGGTGATCTA+CGG | + | chr2_2:62545900-62545919 | None:intergenic | 50.0% |
| CCGTAGATCACCCAGAAACA+CGG | - | chr2_2:62545897-62545916 | Msa0263290:three_prime_UTR | 50.0% | |
| GCAAGCTCATCAAGATGCCA+AGG | - | chr2_2:62546887-62546906 | Msa0263290:three_prime_UTR | 50.0% | |
| ACTCTTCGCAATCTTGGAGC+TGG | + | chr2_2:62547040-62547059 | None:intergenic | 50.0% | |
| CGCAAAGTCTCGTTCACCAA+AGG | + | chr2_2:62547077-62547096 | None:intergenic | 50.0% | |
| CGAGACTTTGCGACAACTTG+AGG | - | chr2_2:62547085-62547104 | Msa0263290:exon | 50.0% | |
| GAGGAAGTTGCAGCCGAAAT+AGG | - | chr2_2:62547725-62547744 | Msa0263290:intron | 50.0% | |
| GGAAGTTGCAGCCGAAATAG+GGG | - | chr2_2:62547727-62547746 | Msa0263290:intron | 50.0% | |
| GCAATGTGATCAGTGGAGGA+AGG | - | chr2_2:62547907-62547926 | Msa0263290:intron | 50.0% | |
| CTGCTGCTATGTTCTCAGCA+GGG | - | chr2_2:62547942-62547961 | Msa0263290:intron | 50.0% | |
| ! | ACCTCAGGTGCCGTGTTTCT+GGG | + | chr2_2:62545910-62545929 | None:intergenic | 55.0% |
| ! | TACCTCAGGTGCCGTGTTTC+TGG | + | chr2_2:62545911-62545930 | None:intergenic | 55.0% |
| AGTTGCAGCCGAAATAGGGG+CGG | - | chr2_2:62547730-62547749 | Msa0263290:intron | 55.0% | |
| AGCCTTAGCCGCCCCTATTT+CGG | + | chr2_2:62547741-62547760 | None:intergenic | 55.0% | |
| GCTGCTGCTATGTTCTCAGC+AGG | - | chr2_2:62547941-62547960 | Msa0263290:intron | 55.0% | |
| ACCCAGAAACACGGCACCTG+AGG | - | chr2_2:62545906-62545925 | Msa0263290:three_prime_UTR | 60.0% | |
| AGCCGAAATAGGGGCGGCTA+AGG | - | chr2_2:62547736-62547755 | Msa0263290:intron | 60.0% | |
| GGCGAGGGTGACTGAGAAGT+TGG | - | chr2_2:62547829-62547848 | Msa0263290:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 62545644 | 62548368 | 62545644 | ID=Msa0263290;Name=Msa0263290 |
| chr2_2 | mRNA | 62545644 | 62548368 | 62545644 | ID=Msa0263290-mRNA-1;Parent=Msa0263290;Name=Msa0263290-mRNA-1;_AED=0.11;_eAED=0.16;_QI=0|0|0.5|1|0|0|2|1444|97 |
| chr2_2 | exon | 62545644 | 62547226 | 62545644 | ID=Msa0263290-mRNA-1:exon:19350;Parent=Msa0263290-mRNA-1 |
| chr2_2 | exon | 62548214 | 62548368 | 62548214 | ID=Msa0263290-mRNA-1:exon:19349;Parent=Msa0263290-mRNA-1 |
| chr2_2 | CDS | 62548214 | 62548368 | 62548214 | ID=Msa0263290-mRNA-1:cds;Parent=Msa0263290-mRNA-1 |
| chr2_2 | CDS | 62547088 | 62547226 | 62547088 | ID=Msa0263290-mRNA-1:cds;Parent=Msa0263290-mRNA-1 |
| chr2_2 | three_prime_UTR | 62545644 | 62547087 | 62545644 | ID=Msa0263290-mRNA-1:three_prime_utr;Parent=Msa0263290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
