Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0049790 | Msa0221640 | 0.811782 | 5.892232e-51 | -8.615850e-47 |
| Msa0115560 | Msa0221640 | 0.803996 | 2.669672e-49 | -8.615850e-47 |
| Msa0221640 | Msa0263290 | 0.838570 | 2.658081e-57 | -8.615850e-47 |
| Msa0221640 | Msa0265850 | 0.812705 | 3.707039e-51 | -8.615850e-47 |
| Msa0221640 | Msa0300270 | 0.817939 | 2.541935e-52 | -8.615850e-47 |
| Msa0221640 | Msa0300320 | 0.821672 | 3.565171e-53 | -8.615850e-47 |
| Msa0221640 | Msa0300860 | 0.875537 | 2.849491e-68 | -8.615850e-47 |
| Msa0221640 | Msa0337700 | 0.813789 | 2.143040e-51 | -8.615850e-47 |
| Msa0221640 | Msa0338400 | 0.866426 | 2.876535e-65 | -8.615850e-47 |
| Msa0221640 | Msa0344930 | 0.800257 | 1.569138e-48 | -8.615850e-47 |
| Msa0221640 | Msa0378970 | 0.808419 | 3.126851e-50 | -8.615850e-47 |
| Msa0221640 | Msa0428580 | 0.806688 | 7.286055e-50 | -8.615850e-47 |
| Msa0221640 | Msa0432170 | 0.805258 | 1.455927e-49 | -8.615850e-47 |
| Msa0221640 | Msa0474940 | 0.809733 | 1.635116e-50 | -8.615850e-47 |
| Msa0221640 | Msa0479200 | 0.801183 | 1.015333e-48 | -8.615850e-47 |
| Msa0221640 | Msa0521020 | 0.807901 | 4.029451e-50 | -8.615850e-47 |
| Msa0221640 | Msa0576680 | 0.808745 | 2.662873e-50 | -8.615850e-47 |
| Msa0221640 | Msa0909770 | 0.805113 | 1.561300e-49 | -8.615850e-47 |
| Msa0221640 | Msa1010070 | 0.813829 | 2.099382e-51 | -8.615850e-47 |
| Msa0221640 | Msa1050910 | 0.809993 | 1.437591e-50 | -8.615850e-47 |
| Msa0221640 | Msa1208160 | 0.809229 | 2.098402e-50 | -8.615850e-47 |
| Msa0221640 | Msa1208430 | 0.810197 | 1.299327e-50 | -8.615850e-47 |
| Msa0221640 | Msa1228200 | 0.801149 | 1.031974e-48 | -8.615850e-47 |
| Msa0221640 | Msa1258340 | 0.808322 | 3.279094e-50 | -8.615850e-47 |
| Msa0221640 | Msa1438520 | 0.801178 | 1.017572e-48 | -8.615850e-47 |
| Msa0221640 | Msa1439610 | 0.808558 | 2.920100e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 89 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGCACATGACAGAAATT+TGG | 0.236291 | 2_1:-70305765 | Msa0221640:three_prime_UTR |
| TGTTCTGAATCTGTTCTTCT+TGG | 0.252805 | 2_1:+70305621 | None:intergenic |
| CTCTTTCAACTCCTCAATTT+CGG | 0.259232 | 2_1:+70305511 | None:intergenic |
| AATTTAAGAAGGAACTTAAA+AGG | 0.271917 | 2_1:-70305382 | Msa0221640:three_prime_UTR |
| GAGGAAGTTGCAGCCGAAAT+AGG | 0.279931 | 2_1:-70305221 | Msa0221640:three_prime_UTR |
| TAGTAATATTGTGTTGTTAC+TGG | 0.296406 | 2_1:-70304765 | Msa0221640:three_prime_UTR |
| AGGAAGTTGCAGCCGAAATA+GGG | 0.344945 | 2_1:-70305220 | Msa0221640:three_prime_UTR |
| AGCCTTAGCCGCCCCTATTT+CGG | 0.345352 | 2_1:+70305208 | None:intergenic |
| GTGAACATTATTTGATAAGT+TGG | 0.358867 | 2_1:-70304678 | Msa0221640:three_prime_UTR |
| CGCTGAGAGATCGATGTCTA+TGG | 0.368507 | 2_1:-70304967 | Msa0221640:three_prime_UTR |
| TCAAAATTTGCAACTTAAAG+AGG | 0.372117 | 2_1:-70306121 | Msa0221640:CDS |
| GGAAATGGAATCTGAAAGAT+TGG | 0.377371 | 2_1:-70305744 | Msa0221640:three_prime_UTR |
| AAATCGAGTTTCGTTCTTTG+AGG | 0.377376 | 2_1:-70305694 | Msa0221640:three_prime_UTR |
| AATGGTGAACCACTTATTAC+AGG | 0.397412 | 2_1:-70307325 | Msa0221640:CDS |
| CGAATATGTAGCGGCATTGA+AGG | 0.402492 | 2_1:-70305354 | Msa0221640:three_prime_UTR |
| TACCCGTTCAATCAACTCAT+AGG | 0.414385 | 2_1:+70305580 | None:intergenic |
| AGCTGCACAAGTGGCGAATA+CGG | 0.418623 | 2_1:-70305093 | Msa0221640:three_prime_UTR |
| GATTTGACTCTTCGCAATCT+TGG | 0.421704 | 2_1:+70305903 | None:intergenic |
| GAAAGAGAAACTGATGGATA+AGG | 0.425852 | 2_1:-70305495 | Msa0221640:three_prime_UTR |
| ATTCCTTCTTGCTATGTAAG+TGG | 0.431310 | 2_1:-70304725 | Msa0221640:three_prime_UTR |
| ACTCTTCGCAATCTTGGAGC+TGG | 0.432064 | 2_1:+70305909 | None:intergenic |
| AGGTTCACATTCACACTTGA+TGG | 0.434703 | 2_1:-70305254 | Msa0221640:three_prime_UTR |
| GTCAAATCAGGCTCAGCCTT+TGG | 0.435431 | 2_1:-70305888 | Msa0221640:three_prime_UTR |
| TTCAGAACACGGTGAAGATT+AGG | 0.437521 | 2_1:-70305607 | Msa0221640:three_prime_UTR |
| GAGTCAGAGGGAATCTGAAT+TGG | 0.439408 | 2_1:-70305546 | Msa0221640:three_prime_UTR |
| TCATGTATTCTGCTGCTGCT+AGG | 0.442631 | 2_1:+70306153 | None:intergenic |
| TTCTTCTTGGAATTTAATCT+CGG | 0.445092 | 2_1:+70305634 | None:intergenic |
| AGCCGAAATAGGGGCGGCTA+AGG | 0.446269 | 2_1:-70305210 | Msa0221640:three_prime_UTR |
| AAGAGGATTTGAAGAAGGTA+AGG | 0.450428 | 2_1:-70306104 | Msa0221640:CDS |
| AGAAAATGAAATGCTGAAGT+TGG | 0.453858 | 2_1:-70305288 | Msa0221640:three_prime_UTR |
| TGGCATACCCTCTGAGTTTG+AGG | 0.466776 | 2_1:+70307184 | None:intergenic |
| CATGTATTCTGCTGCTGCTA+GGG | 0.469716 | 2_1:+70306154 | None:intergenic |
| GAAGGGTGAAATGATGGATA+AGG | 0.474988 | 2_1:-70305336 | Msa0221640:three_prime_UTR |
| ACATGACAGAAATTTGGAAA+TGG | 0.476384 | 2_1:-70305759 | Msa0221640:three_prime_UTR |
| GGAGAGGGTGACTGAGCAGT+TGG | 0.484257 | 2_1:-70305117 | Msa0221640:three_prime_UTR |
| CCAAATTTCTGTCATGTGCA+AGG | 0.486872 | 2_1:+70305765 | None:intergenic |
| TGCCTATGAGTTGATTGAAC+GGG | 0.490287 | 2_1:-70305582 | Msa0221640:three_prime_UTR |
| GCTGCTGCTATGTTCTCAGC+AGG | 0.495964 | 2_1:-70305005 | Msa0221640:three_prime_UTR |
| AGAGCAATAGTAAGATGGAG+AGG | 0.500311 | 2_1:-70305133 | Msa0221640:three_prime_UTR |
| AGATTGCGAAGAGTCAAATC+AGG | 0.512278 | 2_1:-70305900 | Msa0221640:three_prime_UTR |
| ATATTCATGGCTTCAAGCTA+AGG | 0.516112 | 2_1:+70304571 | None:intergenic |
| TAAAATCAGAATTGAGTCAG+AGG | 0.516246 | 2_1:-70305559 | Msa0221640:three_prime_UTR |
| TATCAATTCAAATTGAACCT+TGG | 0.521085 | 2_1:+70306042 | None:intergenic |
| ACTTAAAGAGGATTTGAAGA+AGG | 0.523150 | 2_1:-70306109 | Msa0221640:CDS |
| ATCAAACAAACTATGTAGAA+AGG | 0.526655 | 2_1:+70304630 | None:intergenic |
| CAATAAAGACCTGTAATAAG+TGG | 0.526909 | 2_1:+70307316 | None:intergenic |
| GGCATTGAAGGGTGAAATGA+TGG | 0.528551 | 2_1:-70305342 | Msa0221640:three_prime_UTR |
| GAATGAGTTGCAAGGTATTG+TGG | 0.528922 | 2_1:-70305471 | Msa0221640:three_prime_UTR |
| GGTCTGAGGTTGAACTACTT+AGG | 0.529666 | 2_1:-70305673 | Msa0221640:three_prime_UTR |
| CGAGACTTTGCGACAACTTG+AGG | 0.531400 | 2_1:-70305861 | Msa0221640:three_prime_UTR |
| GAGCAATAGTAAGATGGAGA+GGG | 0.534266 | 2_1:-70305132 | Msa0221640:three_prime_UTR |
| CAGCAGCAGAATACATGAAG+TGG | 0.544712 | 2_1:-70306148 | Msa0221640:CDS |
| GTTTCGTTCTTTGAGGTCTG+AGG | 0.547517 | 2_1:-70305687 | Msa0221640:three_prime_UTR |
| TGCTAAATTGAAGATAATGA+AGG | 0.549188 | 2_1:-70305168 | Msa0221640:three_prime_UTR |
| ATTGAAGATAATGAAGGAGG+AGG | 0.554380 | 2_1:-70305162 | Msa0221640:three_prime_UTR |
| TGCTTATTGCATGATTCAGA+CGG | 0.555775 | 2_1:+70306079 | None:intergenic |
| CGCAAAGTCTCGTTCACCAA+AGG | 0.558803 | 2_1:+70305872 | None:intergenic |
| AAGAAAGAAAGCCGAAATTG+AGG | 0.562869 | 2_1:-70305522 | Msa0221640:three_prime_UTR |
| AAAAGAACAAGAATTTAAGA+AGG | 0.565174 | 2_1:-70305393 | Msa0221640:three_prime_UTR |
| ACTTGATGGCATAATGAAAG+AGG | 0.569458 | 2_1:-70305240 | Msa0221640:three_prime_UTR |
| CTAAAGTGCCTCAAACTCAG+AGG | 0.572186 | 2_1:-70307192 | Msa0221640:CDS |
| AGAGAAGAGCAATAGTAAGA+TGG | 0.572469 | 2_1:-70305138 | Msa0221640:three_prime_UTR |
| GGAGTTGAAAGAGAAACTGA+TGG | 0.581396 | 2_1:-70305501 | Msa0221640:three_prime_UTR |
| AGAGGATTTGAAGAAGGTAA+GGG | 0.581443 | 2_1:-70306103 | Msa0221640:CDS |
| ATGTTCTCAGCAGGGAACAA+TGG | 0.586344 | 2_1:-70304996 | Msa0221640:three_prime_UTR |
| GGAAGTTGCAGCCGAAATAG+GGG | 0.594864 | 2_1:-70305219 | Msa0221640:three_prime_UTR |
| GAATATGTAGCGGCATTGAA+GGG | 0.599247 | 2_1:-70305353 | Msa0221640:three_prime_UTR |
| AAGAAGCCTCAGAAAACCAC+TGG | 0.599355 | 2_1:-70304819 | Msa0221640:three_prime_UTR |
| GGGAATGTGTTGAAGAAGAT+CGG | 0.599579 | 2_1:-70304852 | Msa0221640:three_prime_UTR |
| TGAAGAAGATCGGTGTCTTG+TGG | 0.601681 | 2_1:-70304842 | Msa0221640:three_prime_UTR |
| TAAATTGAAGATAATGAAGG+AGG | 0.605982 | 2_1:-70305165 | Msa0221640:three_prime_UTR |
| GCAAGCTCATCAAGATGCCA+AGG | 0.608755 | 2_1:-70306059 | Msa0221640:CDS |
| TAAAGTGCCTCAAACTCAGA+GGG | 0.611581 | 2_1:-70307191 | Msa0221640:intron |
| GATCCACTTACATAGCAAGA+AGG | 0.612305 | 2_1:+70304722 | None:intergenic |
| GCAGTTGGAAGCTGCACAAG+TGG | 0.614283 | 2_1:-70305102 | Msa0221640:three_prime_UTR |
| TCAAAGTGCAATGTGATCAG+TGG | 0.620907 | 2_1:-70305046 | Msa0221640:three_prime_UTR |
| ATGCCTATGAGTTGATTGAA+CGG | 0.625428 | 2_1:-70305583 | Msa0221640:three_prime_UTR |
| GATAAGGAGAATGAGTTGCA+AGG | 0.626473 | 2_1:-70305479 | Msa0221640:three_prime_UTR |
| AAAATCAGAATTGAGTCAGA+GGG | 0.634007 | 2_1:-70305558 | Msa0221640:three_prime_UTR |
| CTGCTGCTATGTTCTCAGCA+GGG | 0.643065 | 2_1:-70305004 | Msa0221640:three_prime_UTR |
| AAGTGCAATGTGATCAGTGG+AGG | 0.644957 | 2_1:-70305043 | Msa0221640:three_prime_UTR |
| AGCACTTATGAATCAACCAG+TGG | 0.654911 | 2_1:+70304803 | None:intergenic |
| TGAAGTTGGAAATCAACAAG+AGG | 0.659003 | 2_1:-70305274 | Msa0221640:three_prime_UTR |
| AAGGTTAGACGAATATGTAG+CGG | 0.667109 | 2_1:-70305363 | Msa0221640:three_prime_UTR |
| GTATTGTGGATGAGAATGAG+AGG | 0.675827 | 2_1:-70305457 | Msa0221640:three_prime_UTR |
| GCAATGTGATCAGTGGAGGA+AGG | 0.684889 | 2_1:-70305039 | Msa0221640:three_prime_UTR |
| AATAGCAGAATCGTCAGACA+CGG | 0.686391 | 2_1:-70305993 | Msa0221640:three_prime_UTR |
| AGAAGAACAGATTCAGAACA+CGG | 0.689139 | 2_1:-70305618 | Msa0221640:three_prime_UTR |
| AGTTGCAGCCGAAATAGGGG+CGG | 0.692601 | 2_1:-70305216 | Msa0221640:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATTCAATTTTCAAAAT+TGG | + | chr2_1:70305125-70305144 | None:intergenic | 10.0% |
| !! | TTTCTATCATATATTAATCA+AGG | - | chr2_1:70304890-70304909 | Msa0221640:three_prime_UTR | 15.0% |
| !! | TTCTATCATATATTAATCAA+GGG | - | chr2_1:70304891-70304910 | Msa0221640:three_prime_UTR | 15.0% |
| !!! | TTTGTTTTAGGTTAATTTAT+TGG | - | chr2_1:70305424-70305443 | Msa0221640:three_prime_UTR | 15.0% |
| !!! | AGAATGTTTTTAAGTTTTAA+AGG | - | chr2_1:70305648-70305667 | Msa0221640:three_prime_UTR | 15.0% |
| !! | ATTTGCAAAGAAATAAAAAT+GGG | - | chr2_1:70307033-70307052 | Msa0221640:intron | 15.0% |
| !! | GTGAACAAAAGAAAAAATTT+CGG | + | chr2_1:70304654-70304673 | None:intergenic | 20.0% |
| !!! | TTGATGATGTTTTATGAAAT+TGG | + | chr2_1:70304789-70304808 | None:intergenic | 20.0% |
| !!! | CGTTTTACATTTATAAACAA+GGG | + | chr2_1:70305022-70305041 | None:intergenic | 20.0% |
| !!! | ACGTTTTACATTTATAAACA+AGG | + | chr2_1:70305023-70305042 | None:intergenic | 20.0% |
| !!! | TTTGAATGTTACTTTGTTTT+AGG | - | chr2_1:70305412-70305431 | Msa0221640:three_prime_UTR | 20.0% |
| !!! | ACAGAGTATTTTCATATATT+TGG | - | chr2_1:70305524-70305543 | Msa0221640:three_prime_UTR | 20.0% |
| !! | TGAACAAATTTCAAGAATTT+GGG | + | chr2_1:70305689-70305708 | None:intergenic | 20.0% |
| !! | AAAAGAACAAGAATTTAAGA+AGG | - | chr2_1:70306512-70306531 | Msa0221640:intron | 20.0% |
| !! | AATTTAAGAAGGAACTTAAA+AGG | - | chr2_1:70306523-70306542 | Msa0221640:intron | 20.0% |
| !! | GATTTGCAAAGAAATAAAAA+TGG | - | chr2_1:70307032-70307051 | Msa0221640:intron | 20.0% |
| !! | CAAAAAAGTTTCAAATCTAA+GGG | + | chr2_1:70307208-70307227 | None:intergenic | 20.0% |
| !! | ACAAAAAAGTTTCAAATCTA+AGG | + | chr2_1:70307209-70307228 | None:intergenic | 20.0% |
| ! | GAAAAAATTTCGGTGAATAA+CGG | + | chr2_1:70304644-70304663 | None:intergenic | 25.0% |
| ! | TGATAGAAAAACATGATACA+AGG | + | chr2_1:70304879-70304898 | None:intergenic | 25.0% |
| !!! | AGACTTCACTCTAAAATTAA+AGG | + | chr2_1:70305074-70305093 | None:intergenic | 25.0% |
| ! | TGTGATACTTTACAAAATTC+TGG | - | chr2_1:70305097-70305116 | Msa0221640:three_prime_UTR | 25.0% |
| ! | GTGATACTTTACAAAATTCT+GGG | - | chr2_1:70305098-70305117 | Msa0221640:three_prime_UTR | 25.0% |
| !!! | CAATTGAGTTTATTTTTGTG+AGG | - | chr2_1:70305345-70305364 | Msa0221640:three_prime_UTR | 25.0% |
| !!! | TATTTTTGTGAGGATCAAAT+TGG | - | chr2_1:70305355-70305374 | Msa0221640:three_prime_UTR | 25.0% |
| ! | CTGAACAAATTTCAAGAATT+TGG | + | chr2_1:70305690-70305709 | None:intergenic | 25.0% |
| ! | TCAAAATTTGCAACTTAAAG+AGG | - | chr2_1:70305784-70305803 | Msa0221640:three_prime_UTR | 25.0% |
| ! | TATCAATTCAAATTGAACCT+TGG | + | chr2_1:70305866-70305885 | None:intergenic | 25.0% |
| ! | TTCTTCTTGGAATTTAATCT+CGG | + | chr2_1:70306274-70306293 | None:intergenic | 25.0% |
| ! | TGCTAAATTGAAGATAATGA+AGG | - | chr2_1:70306737-70306756 | Msa0221640:intron | 25.0% |
| ! | TAAATTGAAGATAATGAAGG+AGG | - | chr2_1:70306740-70306759 | Msa0221640:intron | 25.0% |
| !! | TAGTAATATTGTGTTGTTAC+TGG | - | chr2_1:70307140-70307159 | Msa0221640:intron | 25.0% |
| ! | GTGAACATTATTTGATAAGT+TGG | - | chr2_1:70307227-70307246 | Msa0221640:CDS | 25.0% |
| ! | ATCAAACAAACTATGTAGAA+AGG | + | chr2_1:70307278-70307297 | None:intergenic | 25.0% |
| CAATAAAGACCTGTAATAAG+TGG | + | chr2_1:70304592-70304611 | None:intergenic | 30.0% | |
| AAACATCATCAAACGACAAA+AGG | - | chr2_1:70304797-70304816 | Msa0221640:three_prime_UTR | 30.0% | |
| AAGTCAAAGATTAAAGCTGT+TGG | + | chr2_1:70305261-70305280 | None:intergenic | 30.0% | |
| ! | ACAGCTTTAATCTTTGACTT+TGG | - | chr2_1:70305261-70305280 | Msa0221640:three_prime_UTR | 30.0% |
| ! | TGTTACTTCGTGATGTTATT+GGG | - | chr2_1:70305321-70305340 | Msa0221640:three_prime_UTR | 30.0% |
| ! | TTTTTCCTTTGATTCCTCAT+TGG | - | chr2_1:70305497-70305516 | Msa0221640:three_prime_UTR | 30.0% |
| ! | TTTTCCTTTGATTCCTCATT+GGG | - | chr2_1:70305498-70305517 | Msa0221640:three_prime_UTR | 30.0% |
| CAAAGAATGTATTAGTCGAT+AGG | + | chr2_1:70305563-70305582 | None:intergenic | 30.0% | |
| ACTTAAAGAGGATTTGAAGA+AGG | - | chr2_1:70305796-70305815 | Msa0221640:three_prime_UTR | 30.0% | |
| ACATGACAGAAATTTGGAAA+TGG | - | chr2_1:70306146-70306165 | Msa0221640:CDS | 30.0% | |
| TAAAATCAGAATTGAGTCAG+AGG | - | chr2_1:70306346-70306365 | Msa0221640:intron | 30.0% | |
| AAAATCAGAATTGAGTCAGA+GGG | - | chr2_1:70306347-70306366 | Msa0221640:intron | 30.0% | |
| AGAAAATGAAATGCTGAAGT+TGG | - | chr2_1:70306617-70306636 | Msa0221640:intron | 30.0% | |
| !!! | TGATACACACTTTTGACTTT+TGG | - | chr2_1:70307294-70307313 | Msa0221640:CDS | 30.0% |
| !! | ACACATGTGAGAAGTGTTAA+CGG | + | chr2_1:70305161-70305180 | None:intergenic | 35.0% |
| !! | AAAGCTGTTGGCTTAATACA+AGG | + | chr2_1:70305249-70305268 | None:intergenic | 35.0% |
| ! | GCTTTAATCTTTGACTTTGG+CGG | - | chr2_1:70305264-70305283 | Msa0221640:three_prime_UTR | 35.0% |
| ! | AAACACCGCATATTGTTGTT+AGG | - | chr2_1:70305288-70305307 | Msa0221640:three_prime_UTR | 35.0% |
| !! | GTGTTACTTCGTGATGTTAT+TGG | - | chr2_1:70305320-70305339 | Msa0221640:three_prime_UTR | 35.0% |
| ! | GATCTTAGATTTGTTTCGCA+GGG | - | chr2_1:70305377-70305396 | Msa0221640:three_prime_UTR | 35.0% |
| ATTTGTTTCGCAGGGATTTA+AGG | - | chr2_1:70305385-70305404 | Msa0221640:three_prime_UTR | 35.0% | |
| CAATTACGATTCATTTGTGC+CGG | - | chr2_1:70305458-70305477 | Msa0221640:three_prime_UTR | 35.0% | |
| AAATAAAAGTCTGTCCCATC+CGG | + | chr2_1:70305480-70305499 | None:intergenic | 35.0% | |
| TAATCCCAATGAGGAATCAA+AGG | + | chr2_1:70305505-70305524 | None:intergenic | 35.0% | |
| AATACTCTGTAATCCCAATG+AGG | + | chr2_1:70305514-70305533 | None:intergenic | 35.0% | |
| AAGAGGATTTGAAGAAGGTA+AGG | - | chr2_1:70305801-70305820 | Msa0221640:three_prime_UTR | 35.0% | |
| AGAGGATTTGAAGAAGGTAA+GGG | - | chr2_1:70305802-70305821 | Msa0221640:three_prime_UTR | 35.0% | |
| TGCTTATTGCATGATTCAGA+CGG | + | chr2_1:70305829-70305848 | None:intergenic | 35.0% | |
| GGAAATGGAATCTGAAAGAT+TGG | - | chr2_1:70306161-70306180 | Msa0221640:CDS | 35.0% | |
| AAATCGAGTTTCGTTCTTTG+AGG | - | chr2_1:70306211-70306230 | Msa0221640:intron | 35.0% | |
| ! | TGTTCTGAATCTGTTCTTCT+TGG | + | chr2_1:70306287-70306306 | None:intergenic | 35.0% |
| AGAAGAACAGATTCAGAACA+CGG | - | chr2_1:70306287-70306306 | Msa0221640:intron | 35.0% | |
| !! | ATGCCTATGAGTTGATTGAA+CGG | - | chr2_1:70306322-70306341 | Msa0221640:intron | 35.0% |
| AAGAAAGAAAGCCGAAATTG+AGG | - | chr2_1:70306383-70306402 | Msa0221640:intron | 35.0% | |
| CTCTTTCAACTCCTCAATTT+CGG | + | chr2_1:70306397-70306416 | None:intergenic | 35.0% | |
| ! | GAAAGAGAAACTGATGGATA+AGG | - | chr2_1:70306410-70306429 | Msa0221640:intron | 35.0% |
| AAGGTTAGACGAATATGTAG+CGG | - | chr2_1:70306542-70306561 | Msa0221640:intron | 35.0% | |
| TGAAGTTGGAAATCAACAAG+AGG | - | chr2_1:70306631-70306650 | Msa0221640:intron | 35.0% | |
| ! | ACTTGATGGCATAATGAAAG+AGG | - | chr2_1:70306665-70306684 | Msa0221640:intron | 35.0% |
| ATTGAAGATAATGAAGGAGG+AGG | - | chr2_1:70306743-70306762 | Msa0221640:intron | 35.0% | |
| AGAGAAGAGCAATAGTAAGA+TGG | - | chr2_1:70306767-70306786 | Msa0221640:intron | 35.0% | |
| ! | ATTCCTTCTTGCTATGTAAG+TGG | - | chr2_1:70307180-70307199 | Msa0221640:intron | 35.0% |
| ! | TAAAGTGCCTCAAACTCAGA+GGG | - | chr2_1:70304714-70304733 | Msa0221640:three_prime_UTR | 40.0% |
| GTGTTAGTGTCTAGTGAAGA+AGG | + | chr2_1:70304757-70304776 | None:intergenic | 40.0% | |
| ACAAGGAAACACTATACCTC+AGG | + | chr2_1:70304862-70304881 | None:intergenic | 40.0% | |
| GGCTACCTAACAACAATATG+CGG | + | chr2_1:70305296-70305315 | None:intergenic | 40.0% | |
| ACATCACGAAGTAACACGAT+TGG | + | chr2_1:70305317-70305336 | None:intergenic | 40.0% | |
| ! | GGATCTTAGATTTGTTTCGC+AGG | - | chr2_1:70305376-70305395 | Msa0221640:three_prime_UTR | 40.0% |
| AATAGCAGAATCGTCAGACA+CGG | - | chr2_1:70305912-70305931 | Msa0221640:three_prime_UTR | 40.0% | |
| GATTTGACTCTTCGCAATCT+TGG | + | chr2_1:70306005-70306024 | None:intergenic | 40.0% | |
| AGATTGCGAAGAGTCAAATC+AGG | - | chr2_1:70306005-70306024 | Msa0221640:three_prime_UTR | 40.0% | |
| CCAAATTTCTGTCATGTGCA+AGG | + | chr2_1:70306143-70306162 | None:intergenic | 40.0% | |
| CCTTGCACATGACAGAAATT+TGG | - | chr2_1:70306140-70306159 | Msa0221640:CDS | 40.0% | |
| TTCAGAACACGGTGAAGATT+AGG | - | chr2_1:70306298-70306317 | Msa0221640:intron | 40.0% | |
| !! | TGCCTATGAGTTGATTGAAC+GGG | - | chr2_1:70306323-70306342 | Msa0221640:intron | 40.0% |
| TACCCGTTCAATCAACTCAT+AGG | + | chr2_1:70306328-70306347 | None:intergenic | 40.0% | |
| GGAGTTGAAAGAGAAACTGA+TGG | - | chr2_1:70306404-70306423 | Msa0221640:intron | 40.0% | |
| GATAAGGAGAATGAGTTGCA+AGG | - | chr2_1:70306426-70306445 | Msa0221640:intron | 40.0% | |
| !! | GAATGAGTTGCAAGGTATTG+TGG | - | chr2_1:70306434-70306453 | Msa0221640:intron | 40.0% |
| GTATTGTGGATGAGAATGAG+AGG | - | chr2_1:70306448-70306467 | Msa0221640:intron | 40.0% | |
| ! | GAATATGTAGCGGCATTGAA+GGG | - | chr2_1:70306552-70306571 | Msa0221640:intron | 40.0% |
| !! | GAAGGGTGAAATGATGGATA+AGG | - | chr2_1:70306569-70306588 | Msa0221640:intron | 40.0% |
| AGGTTCACATTCACACTTGA+TGG | - | chr2_1:70306651-70306670 | Msa0221640:intron | 40.0% | |
| AGAGCAATAGTAAGATGGAG+AGG | - | chr2_1:70306772-70306791 | Msa0221640:intron | 40.0% | |
| GAGCAATAGTAAGATGGAGA+GGG | - | chr2_1:70306773-70306792 | Msa0221640:intron | 40.0% | |
| TCAAAGTGCAATGTGATCAG+TGG | - | chr2_1:70306859-70306878 | Msa0221640:intron | 40.0% | |
| GGGAATGTGTTGAAGAAGAT+CGG | - | chr2_1:70307053-70307072 | Msa0221640:intron | 40.0% | |
| ! | AATCAACCAGTGGTTTTCTG+AGG | + | chr2_1:70307095-70307114 | None:intergenic | 40.0% |
| AGCACTTATGAATCAACCAG+TGG | + | chr2_1:70307105-70307124 | None:intergenic | 40.0% | |
| GATCCACTTACATAGCAAGA+AGG | + | chr2_1:70307186-70307205 | None:intergenic | 40.0% | |
| ! | CTAAAGTGCCTCAAACTCAG+AGG | - | chr2_1:70304713-70304732 | Msa0221640:three_prime_UTR | 45.0% |
| TACGATTCATTTGTGCCGGA+TGG | - | chr2_1:70305462-70305481 | Msa0221640:three_prime_UTR | 45.0% | |
| ACGATTCATTTGTGCCGGAT+GGG | - | chr2_1:70305463-70305482 | Msa0221640:three_prime_UTR | 45.0% | |
| CATGTATTCTGCTGCTGCTA+GGG | + | chr2_1:70305754-70305773 | None:intergenic | 45.0% | |
| TCATGTATTCTGCTGCTGCT+AGG | + | chr2_1:70305755-70305774 | None:intergenic | 45.0% | |
| CAGCAGCAGAATACATGAAG+TGG | - | chr2_1:70305757-70305776 | Msa0221640:three_prime_UTR | 45.0% | |
| !! | GTTTCGTTCTTTGAGGTCTG+AGG | - | chr2_1:70306218-70306237 | Msa0221640:intron | 45.0% |
| ! | GGTCTGAGGTTGAACTACTT+AGG | - | chr2_1:70306232-70306251 | Msa0221640:intron | 45.0% |
| GAGTCAGAGGGAATCTGAAT+TGG | - | chr2_1:70306359-70306378 | Msa0221640:intron | 45.0% | |
| ! | CGAATATGTAGCGGCATTGA+AGG | - | chr2_1:70306551-70306570 | Msa0221640:intron | 45.0% |
| ! | GGCATTGAAGGGTGAAATGA+TGG | - | chr2_1:70306563-70306582 | Msa0221640:intron | 45.0% |
| AGGAAGTTGCAGCCGAAATA+GGG | - | chr2_1:70306685-70306704 | Msa0221640:intron | 45.0% | |
| AAGTGCAATGTGATCAGTGG+AGG | - | chr2_1:70306862-70306881 | Msa0221640:intron | 45.0% | |
| ATGTTCTCAGCAGGGAACAA+TGG | - | chr2_1:70306909-70306928 | Msa0221640:intron | 45.0% | |
| ! | TGAAGAAGATCGGTGTCTTG+TGG | - | chr2_1:70307063-70307082 | Msa0221640:intron | 45.0% |
| AAGAAGCCTCAGAAAACCAC+TGG | - | chr2_1:70307086-70307105 | Msa0221640:intron | 45.0% | |
| TGGCATACCCTCTGAGTTTG+AGG | + | chr2_1:70304724-70304743 | None:intergenic | 50.0% | |
| ! | AGAGGGTATGCCATCATCTC+AGG | - | chr2_1:70304731-70304750 | Msa0221640:three_prime_UTR | 50.0% |
| GTGAAGAAGGCCTGAGATGA+TGG | + | chr2_1:70304744-70304763 | None:intergenic | 50.0% | |
| TGATCTACGGTCGGTGACTA+TGG | + | chr2_1:70304824-70304843 | None:intergenic | 50.0% | |
| ! | GTTTCTGGGTGATCTACGGT+CGG | + | chr2_1:70304833-70304852 | None:intergenic | 50.0% |
| !! | CCGTGTTTCTGGGTGATCTA+CGG | + | chr2_1:70304837-70304856 | None:intergenic | 50.0% |
| CCGTAGATCACCCAGAAACA+CGG | - | chr2_1:70304834-70304853 | Msa0221640:three_prime_UTR | 50.0% | |
| GCAAGCTCATCAAGATGCCA+AGG | - | chr2_1:70305846-70305865 | Msa0221640:three_prime_UTR | 50.0% | |
| ACTCTTCGCAATCTTGGAGC+TGG | + | chr2_1:70305999-70306018 | None:intergenic | 50.0% | |
| GTCAAATCAGGCTCAGCCTT+TGG | - | chr2_1:70306017-70306036 | Msa0221640:three_prime_UTR | 50.0% | |
| CGCAAAGTCTCGTTCACCAA+AGG | + | chr2_1:70306036-70306055 | None:intergenic | 50.0% | |
| CGAGACTTTGCGACAACTTG+AGG | - | chr2_1:70306044-70306063 | Msa0221640:CDS | 50.0% | |
| GAGGAAGTTGCAGCCGAAAT+AGG | - | chr2_1:70306684-70306703 | Msa0221640:intron | 50.0% | |
| GGAAGTTGCAGCCGAAATAG+GGG | - | chr2_1:70306686-70306705 | Msa0221640:intron | 50.0% | |
| AGCTGCACAAGTGGCGAATA+CGG | - | chr2_1:70306812-70306831 | Msa0221640:intron | 50.0% | |
| GCAATGTGATCAGTGGAGGA+AGG | - | chr2_1:70306866-70306885 | Msa0221640:intron | 50.0% | |
| CTGCTGCTATGTTCTCAGCA+GGG | - | chr2_1:70306901-70306920 | Msa0221640:intron | 50.0% | |
| CGCTGAGAGATCGATGTCTA+TGG | - | chr2_1:70306938-70306957 | Msa0221640:intron | 50.0% | |
| ! | ACCTCAGGTGCCGTGTTTCT+GGG | + | chr2_1:70304847-70304866 | None:intergenic | 55.0% |
| ! | TACCTCAGGTGCCGTGTTTC+TGG | + | chr2_1:70304848-70304867 | None:intergenic | 55.0% |
| AGTTGCAGCCGAAATAGGGG+CGG | - | chr2_1:70306689-70306708 | Msa0221640:intron | 55.0% | |
| AGCCTTAGCCGCCCCTATTT+CGG | + | chr2_1:70306700-70306719 | None:intergenic | 55.0% | |
| GCAGTTGGAAGCTGCACAAG+TGG | - | chr2_1:70306803-70306822 | Msa0221640:intron | 55.0% | |
| GCTGCTGCTATGTTCTCAGC+AGG | - | chr2_1:70306900-70306919 | Msa0221640:intron | 55.0% | |
| ACCCAGAAACACGGCACCTG+AGG | - | chr2_1:70304843-70304862 | Msa0221640:three_prime_UTR | 60.0% | |
| AGCCGAAATAGGGGCGGCTA+AGG | - | chr2_1:70306695-70306714 | Msa0221640:intron | 60.0% | |
| GGAGAGGGTGACTGAGCAGT+TGG | - | chr2_1:70306788-70306807 | Msa0221640:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 70304581 | 70307346 | 70304581 | ID=Msa0221640;Name=Msa0221640 |
| chr2_1 | mRNA | 70304581 | 70307346 | 70304581 | ID=Msa0221640-mRNA-1;Parent=Msa0221640;Name=Msa0221640-mRNA-1;_AED=0.06;_eAED=0.11;_QI=0|0|0.5|1|0|0|2|1463|97 |
| chr2_1 | exon | 70304581 | 70306182 | 70304581 | ID=Msa0221640-mRNA-1:exon:20112;Parent=Msa0221640-mRNA-1 |
| chr2_1 | exon | 70307192 | 70307346 | 70307192 | ID=Msa0221640-mRNA-1:exon:20111;Parent=Msa0221640-mRNA-1 |
| chr2_1 | CDS | 70307192 | 70307346 | 70307192 | ID=Msa0221640-mRNA-1:cds;Parent=Msa0221640-mRNA-1 |
| chr2_1 | CDS | 70306044 | 70306182 | 70306044 | ID=Msa0221640-mRNA-1:cds;Parent=Msa0221640-mRNA-1 |
| chr2_1 | three_prime_UTR | 70304581 | 70306043 | 70304581 | ID=Msa0221640-mRNA-1:three_prime_utr;Parent=Msa0221640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
