Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024550 | Msa0338400 | 0.800271 | 1.558808e-48 | -8.615850e-47 |
| Msa0049790 | Msa0338400 | 0.803681 | 3.104234e-49 | -8.615850e-47 |
| Msa0221640 | Msa0338400 | 0.866426 | 2.876535e-65 | -8.615850e-47 |
| Msa0263290 | Msa0338400 | 0.849884 | 2.427983e-60 | -8.615850e-47 |
| Msa0265850 | Msa0338400 | 0.817912 | 2.577697e-52 | -8.615850e-47 |
| Msa0300270 | Msa0338400 | 0.827393 | 1.604072e-54 | -8.615850e-47 |
| Msa0300320 | Msa0338400 | 0.818021 | 2.436211e-52 | -8.615850e-47 |
| Msa0300860 | Msa0338400 | 0.942750 | 4.127664e-102 | -8.615850e-47 |
| Msa0337700 | Msa0338400 | 0.819898 | 9.118765e-53 | -8.615850e-47 |
| Msa0338400 | Msa0378720 | 0.812903 | 3.354705e-51 | -8.615850e-47 |
| Msa0338400 | Msa0385390 | 0.835439 | 1.676651e-56 | -8.615850e-47 |
| Msa0338400 | Msa0415320 | 0.812448 | 4.219069e-51 | -8.615850e-47 |
| Msa0338400 | Msa0474730 | 0.804299 | 2.308847e-49 | -8.615850e-47 |
| Msa0338400 | Msa0626510 | 0.816863 | 4.441832e-52 | -8.615850e-47 |
| Msa0338400 | Msa0795870 | 0.801039 | 1.086485e-48 | -8.615850e-47 |
| Msa0338400 | Msa0861510 | 0.812122 | 4.969075e-51 | -8.615850e-47 |
| Msa0338400 | Msa0861600 | 0.810182 | 1.309064e-50 | -8.615850e-47 |
| Msa0338400 | Msa0967380 | 0.811601 | 6.451854e-51 | -8.615850e-47 |
| Msa0338400 | Msa1031930 | 0.816388 | 5.675463e-52 | -8.615850e-47 |
| Msa0338400 | Msa1123380 | 0.802209 | 6.254022e-49 | -8.615850e-47 |
| Msa0338400 | Msa1158830 | 0.801697 | 7.966176e-49 | -8.615850e-47 |
| Msa0338400 | Msa1208160 | 0.804497 | 2.099571e-49 | -8.615850e-47 |
| Msa0338400 | Msa1208430 | 0.834365 | 3.125851e-56 | -8.615850e-47 |
| Msa0338400 | Msa1258340 | 0.806628 | 7.500353e-50 | -8.615850e-47 |
| Msa0338400 | Msa1267770 | 0.801404 | 9.148512e-49 | -8.615850e-47 |
| Msa0338400 | Msa1298370 | 0.822278 | 2.580320e-53 | -8.615850e-47 |
| Msa0338400 | Msa1303250 | 0.803310 | 3.705652e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 90 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAAACAGTTTCAAATCTA+AGG | 0.231560 | 2_4:+58646408 | None:intergenic |
| CCTTGCACATGACAGAAATT+TGG | 0.236291 | 2_4:-58647474 | Msa0338400:three_prime_UTR |
| TGTTCTGAATCTGTTCTTCT+TGG | 0.252805 | 2_4:+58647330 | None:intergenic |
| CTCTTTCAACTCCTCAATTT+CGG | 0.259543 | 2_4:+58647220 | None:intergenic |
| AATTTAAGAAGGAACTTAAA+AGG | 0.271917 | 2_4:-58647091 | Msa0338400:three_prime_UTR |
| GAGGAAGTTGCAGCCGAAAT+AGG | 0.279931 | 2_4:-58646930 | Msa0338400:three_prime_UTR |
| TAGTAATATTGTGCTGTTAC+TGG | 0.317109 | 2_4:-58646474 | Msa0338400:three_prime_UTR |
| AGGAAGTTGCAGCCGAAATA+GGG | 0.344945 | 2_4:-58646929 | Msa0338400:three_prime_UTR |
| AGCCTTAGCCGCCCCTATTT+CGG | 0.345352 | 2_4:+58646917 | None:intergenic |
| GTGAACATTATTTGATAAGT+TGG | 0.358867 | 2_4:-58646387 | Msa0338400:three_prime_UTR |
| TCAAAATTTGCAACTTAAAG+AGG | 0.372117 | 2_4:-58647830 | Msa0338400:CDS |
| AAATCGAGTTTCGTTCTTTG+AGG | 0.377376 | 2_4:-58647403 | Msa0338400:three_prime_UTR |
| GGAAATGGAATCTGAAAGAT+TGG | 0.385666 | 2_4:-58647453 | Msa0338400:three_prime_UTR |
| CCTCTGCAGCCTTCCTCCAC+TGG | 0.391085 | 2_4:+58646739 | None:intergenic |
| TGCTGAGAGATCGATGTCTA+TGG | 0.392123 | 2_4:-58646676 | Msa0338400:three_prime_UTR |
| AATGGTGAACCACTTATTAC+AGG | 0.397412 | 2_4:-58649046 | Msa0338400:CDS |
| CGAATATGTAGCGGCATTGA+AGG | 0.402492 | 2_4:-58647063 | Msa0338400:three_prime_UTR |
| GGAGTTGAAAGAGAAATTGA+TGG | 0.404238 | 2_4:-58647210 | Msa0338400:three_prime_UTR |
| TACCCGTTCAATCAACTCAT+AGG | 0.414385 | 2_4:+58647289 | None:intergenic |
| AGCTGCACAAGTGGCGAATA+CGG | 0.418623 | 2_4:-58646802 | Msa0338400:three_prime_UTR |
| GATTTGACTCTTCGCAATCT+TGG | 0.421704 | 2_4:+58647612 | None:intergenic |
| ATTCCTTCTTGCTATGTAAG+TGG | 0.431310 | 2_4:-58646434 | Msa0338400:three_prime_UTR |
| ACTCTTCGCAATCTTGGAGC+TGG | 0.432064 | 2_4:+58647618 | None:intergenic |
| GTCAAATCAGGCTCAACCTT+TGG | 0.433135 | 2_4:-58647597 | Msa0338400:three_prime_UTR |
| AGGTTCACATTCACACTTGA+TGG | 0.434703 | 2_4:-58646963 | Msa0338400:three_prime_UTR |
| TTCAGAACACGGTGAAGATT+AGG | 0.437521 | 2_4:-58647316 | Msa0338400:three_prime_UTR |
| GAGTCAGAGGGAATCTGAAT+TGG | 0.439408 | 2_4:-58647255 | Msa0338400:three_prime_UTR |
| TCATGTATTCTGCTGCTGCT+AGG | 0.442631 | 2_4:+58647862 | None:intergenic |
| TTCTTCTTGGAATTTAATCT+CGG | 0.445092 | 2_4:+58647343 | None:intergenic |
| AGCCGAAATAGGGGCGGCTA+AGG | 0.446269 | 2_4:-58646919 | Msa0338400:three_prime_UTR |
| GAAAGAGAAATTGATGGATA+AGG | 0.449435 | 2_4:-58647204 | Msa0338400:three_prime_UTR |
| AAGAGGATTTGAAGAAGGTA+AGG | 0.450428 | 2_4:-58647813 | Msa0338400:CDS |
| AGAAAATGAAATGCTGAAGT+TGG | 0.453858 | 2_4:-58646997 | Msa0338400:three_prime_UTR |
| TGGCATACCCTCTGAGTTTG+AGG | 0.466776 | 2_4:+58648905 | None:intergenic |
| CATGTATTCTGCTGCTGCTA+GGG | 0.469716 | 2_4:+58647863 | None:intergenic |
| GAAGGGTGAAATGATGGATA+AGG | 0.474988 | 2_4:-58647045 | Msa0338400:three_prime_UTR |
| ACATGACAGAAATTTGGAAA+TGG | 0.476384 | 2_4:-58647468 | Msa0338400:three_prime_UTR |
| GGCGAGGGTGGCTGAGCAGT+TGG | 0.485157 | 2_4:-58646826 | Msa0338400:three_prime_UTR |
| CCAAATTTCTGTCATGTGCA+AGG | 0.486872 | 2_4:+58647474 | None:intergenic |
| TGCCTATGAGTTGATTGAAC+GGG | 0.490287 | 2_4:-58647291 | Msa0338400:three_prime_UTR |
| CAAAACAGTTTCAAATCTAA+GGG | 0.501281 | 2_4:+58646409 | None:intergenic |
| AAATGTATGGCTTCAAGCTA+AGG | 0.509817 | 2_4:+58646284 | None:intergenic |
| AGATTGCGAAGAGTCAAATC+AGG | 0.512278 | 2_4:-58647609 | Msa0338400:three_prime_UTR |
| TAAAATCAGAATTGAGTCAG+AGG | 0.516246 | 2_4:-58647268 | Msa0338400:three_prime_UTR |
| TATCAATTCAAATTGAACCT+TGG | 0.521085 | 2_4:+58647751 | None:intergenic |
| ACTTAAAGAGGATTTGAAGA+AGG | 0.523150 | 2_4:-58647818 | Msa0338400:CDS |
| GTGTATCAAACTATGTAGAA+AGG | 0.523389 | 2_4:+58646339 | None:intergenic |
| CAATAAAGACCTGTAATAAG+TGG | 0.526909 | 2_4:+58649037 | None:intergenic |
| GGCATTGAAGGGTGAAATGA+TGG | 0.528551 | 2_4:-58647051 | Msa0338400:three_prime_UTR |
| GAATGAGTTGCAAGGTATTG+TGG | 0.528922 | 2_4:-58647180 | Msa0338400:three_prime_UTR |
| GGTCTGAGGTTGAACTACTT+AGG | 0.529666 | 2_4:-58647382 | Msa0338400:three_prime_UTR |
| CCAGTGGAGGAAGGCTGCAG+AGG | 0.536334 | 2_4:-58646739 | Msa0338400:three_prime_UTR |
| CAGCAGCAGAATACATGAAG+TGG | 0.544712 | 2_4:-58647857 | Msa0338400:CDS |
| GTTTCGTTCTTTGAGGTCTG+AGG | 0.547517 | 2_4:-58647396 | Msa0338400:three_prime_UTR |
| TGAGACTTTGCGACAACTTG+AGG | 0.547812 | 2_4:-58647570 | Msa0338400:three_prime_UTR |
| TGCTAAATTGAAGATAATGA+AGG | 0.549188 | 2_4:-58646877 | Msa0338400:three_prime_UTR |
| ATTGAAGATAATGAAGGAGG+AGG | 0.554380 | 2_4:-58646871 | Msa0338400:three_prime_UTR |
| TGCTTATTGCATGATTCAGA+CGG | 0.555775 | 2_4:+58647788 | None:intergenic |
| CAATAGTAAGATGGCGAGGG+TGG | 0.558191 | 2_4:-58646838 | Msa0338400:three_prime_UTR |
| AGAGAAGAGCAATAGTAAGA+TGG | 0.561769 | 2_4:-58646847 | Msa0338400:three_prime_UTR |
| CGCAAAGTCTCATTCACCAA+AGG | 0.561893 | 2_4:+58647581 | None:intergenic |
| AAGAAAGAAAGCCGAAATTG+AGG | 0.562869 | 2_4:-58647231 | Msa0338400:three_prime_UTR |
| AAAAGAACAAGAATTTAAGA+AGG | 0.565174 | 2_4:-58647102 | Msa0338400:three_prime_UTR |
| TGAAGAAGATCGGTGTCTTG+TGG | 0.566112 | 2_4:-58646551 | Msa0338400:three_prime_UTR |
| ACTTGATGGCATAATGAAAG+AGG | 0.569458 | 2_4:-58646949 | Msa0338400:three_prime_UTR |
| CTAAAGTGCCTCAAACTCAG+AGG | 0.572186 | 2_4:-58648913 | Msa0338400:CDS |
| AGAGGATTTGAAGAAGGTAA+GGG | 0.581443 | 2_4:-58647812 | Msa0338400:CDS |
| AGAGCAATAGTAAGATGGCG+AGG | 0.583720 | 2_4:-58646842 | Msa0338400:three_prime_UTR |
| AAGTGCAATGTGACCAGTGG+AGG | 0.591281 | 2_4:-58646752 | Msa0338400:three_prime_UTR |
| GGAAGTTGCAGCCGAAATAG+GGG | 0.594864 | 2_4:-58646928 | Msa0338400:three_prime_UTR |
| GAATATGTAGCGGCATTGAA+GGG | 0.599247 | 2_4:-58647062 | Msa0338400:three_prime_UTR |
| AAGAAGCCTCAGAAAACCAC+TGG | 0.599355 | 2_4:-58646528 | Msa0338400:three_prime_UTR |
| TAAATTGAAGATAATGAAGG+AGG | 0.605982 | 2_4:-58646874 | Msa0338400:three_prime_UTR |
| GCAAGCTCATCAAGATGCCA+AGG | 0.608755 | 2_4:-58647768 | Msa0338400:CDS |
| TAAAGTGCCTCAAACTCAGA+GGG | 0.611581 | 2_4:-58648912 | Msa0338400:intron |
| GATCCACTTACATAGCAAGA+AGG | 0.612305 | 2_4:+58646431 | None:intergenic |
| GAGCAATAGTAAGATGGCGA+GGG | 0.612884 | 2_4:-58646841 | Msa0338400:three_prime_UTR |
| GCAGTTGGAAGCTGCACAAG+TGG | 0.614283 | 2_4:-58646811 | Msa0338400:three_prime_UTR |
| ATGCCTATGAGTTGATTGAA+CGG | 0.625428 | 2_4:-58647292 | Msa0338400:three_prime_UTR |
| GATAAGGAGAATGAGTTGCA+AGG | 0.626473 | 2_4:-58647188 | Msa0338400:three_prime_UTR |
| AAAATCAGAATTGAGTCAGA+GGG | 0.634007 | 2_4:-58647267 | Msa0338400:three_prime_UTR |
| TCAAAGTGCAATGTGACCAG+TGG | 0.649322 | 2_4:-58646755 | Msa0338400:three_prime_UTR |
| AGCACTTATGAATCAACCAG+TGG | 0.654911 | 2_4:+58646512 | None:intergenic |
| TGAAGTTGGAAATCAACAAG+AGG | 0.659003 | 2_4:-58646983 | Msa0338400:three_prime_UTR |
| GCAATGTGACCAGTGGAGGA+AGG | 0.665387 | 2_4:-58646748 | Msa0338400:three_prime_UTR |
| AAGGTTAGACGAATATGTAG+CGG | 0.667109 | 2_4:-58647072 | Msa0338400:three_prime_UTR |
| GTATTGTGGATGAGAATGAG+AGG | 0.675827 | 2_4:-58647166 | Msa0338400:three_prime_UTR |
| AATAGCAGAATCGTCAGACA+CGG | 0.686391 | 2_4:-58647702 | Msa0338400:three_prime_UTR |
| AGAAGAACAGATTCAGAACA+CGG | 0.689139 | 2_4:-58647327 | Msa0338400:three_prime_UTR |
| AGTTGCAGCCGAAATAGGGG+CGG | 0.692601 | 2_4:-58646925 | Msa0338400:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATTCAATTTTCAAAAT+TGG | + | chr2_4:58646838-58646857 | None:intergenic | 10.0% |
| !! | TTTCTATCATATATTAATCA+AGG | - | chr2_4:58646603-58646622 | Msa0338400:three_prime_UTR | 15.0% |
| !! | TTCTATCATATATTAATCAA+GGG | - | chr2_4:58646604-58646623 | Msa0338400:three_prime_UTR | 15.0% |
| !!! | TTTGTTTTAGGTTAATTTAT+TGG | - | chr2_4:58647137-58647156 | Msa0338400:three_prime_UTR | 15.0% |
| !!! | AGAATGTTTTTAAGTTTTAA+AGG | - | chr2_4:58647373-58647392 | Msa0338400:three_prime_UTR | 15.0% |
| !! | ATTTGCAAAGAAATAAAAAT+GGG | - | chr2_4:58648758-58648777 | Msa0338400:intron | 15.0% |
| !! | GTGAACAAAAGAAAAAATTT+CGG | + | chr2_4:58646367-58646386 | None:intergenic | 20.0% |
| !!! | TTGATGATGTTTTATGAAAT+TGG | + | chr2_4:58646502-58646521 | None:intergenic | 20.0% |
| !!! | CGTTTTACATTTATAAACAA+GGG | + | chr2_4:58646735-58646754 | None:intergenic | 20.0% |
| !!! | ACGTTTTACATTTATAAACA+AGG | + | chr2_4:58646736-58646755 | None:intergenic | 20.0% |
| !!! | TTTGAATGTTACTTTGTTTT+AGG | - | chr2_4:58647125-58647144 | Msa0338400:three_prime_UTR | 20.0% |
| !!! | ACAGAGTATTTTCATATATT+TGG | - | chr2_4:58647237-58647256 | Msa0338400:three_prime_UTR | 20.0% |
| !! | TGAACAAATTTCAAGAATTT+GGG | + | chr2_4:58647414-58647433 | None:intergenic | 20.0% |
| !! | AAAAGAACAAGAATTTAAGA+AGG | - | chr2_4:58648237-58648256 | Msa0338400:intron | 20.0% |
| !! | AATTTAAGAAGGAACTTAAA+AGG | - | chr2_4:58648248-58648267 | Msa0338400:intron | 20.0% |
| !! | GATTTGCAAAGAAATAAAAA+TGG | - | chr2_4:58648757-58648776 | Msa0338400:intron | 20.0% |
| ! | GAAAAAATTTCGGTGAATAA+CGG | + | chr2_4:58646357-58646376 | None:intergenic | 25.0% |
| ! | TGATAGAAAAACATGATACA+AGG | + | chr2_4:58646592-58646611 | None:intergenic | 25.0% |
| !!! | AGACTTCACTCTAAAATTAA+AGG | + | chr2_4:58646787-58646806 | None:intergenic | 25.0% |
| ! | TGTGATACTTTACAAAATTC+TGG | - | chr2_4:58646810-58646829 | Msa0338400:three_prime_UTR | 25.0% |
| ! | GTGATACTTTACAAAATTCT+GGG | - | chr2_4:58646811-58646830 | Msa0338400:three_prime_UTR | 25.0% |
| !!! | CAATTGAGTTTATTTTTGTG+AGG | - | chr2_4:58647058-58647077 | Msa0338400:three_prime_UTR | 25.0% |
| !!! | TATTTTTGTGAGGATCAAAT+TGG | - | chr2_4:58647068-58647087 | Msa0338400:three_prime_UTR | 25.0% |
| ! | CTGAACAAATTTCAAGAATT+TGG | + | chr2_4:58647415-58647434 | None:intergenic | 25.0% |
| ! | TCAAAATTTGCAACTTAAAG+AGG | - | chr2_4:58647509-58647528 | Msa0338400:three_prime_UTR | 25.0% |
| ! | TATCAATTCAAATTGAACCT+TGG | + | chr2_4:58647591-58647610 | None:intergenic | 25.0% |
| ! | TTCTTCTTGGAATTTAATCT+CGG | + | chr2_4:58647999-58648018 | None:intergenic | 25.0% |
| ! | TGCTAAATTGAAGATAATGA+AGG | - | chr2_4:58648462-58648481 | Msa0338400:intron | 25.0% |
| ! | TAAATTGAAGATAATGAAGG+AGG | - | chr2_4:58648465-58648484 | Msa0338400:intron | 25.0% |
| ! | CAAAACAGTTTCAAATCTAA+GGG | + | chr2_4:58648933-58648952 | None:intergenic | 25.0% |
| ! | ACAAAACAGTTTCAAATCTA+AGG | + | chr2_4:58648934-58648953 | None:intergenic | 25.0% |
| ! | GTGAACATTATTTGATAAGT+TGG | - | chr2_4:58648952-58648971 | Msa0338400:CDS | 25.0% |
| CAATAAAGACCTGTAATAAG+TGG | + | chr2_4:58646305-58646324 | None:intergenic | 30.0% | |
| AAACATCATCAAACGACAAA+AGG | - | chr2_4:58646510-58646529 | Msa0338400:three_prime_UTR | 30.0% | |
| AAGTCAAAGATTAAAGCTGT+TGG | + | chr2_4:58646974-58646993 | None:intergenic | 30.0% | |
| ! | ACAGCTTTAATCTTTGACTT+TGG | - | chr2_4:58646974-58646993 | Msa0338400:three_prime_UTR | 30.0% |
| ! | TGTTACTTCGTGATGTTATT+GGG | - | chr2_4:58647034-58647053 | Msa0338400:three_prime_UTR | 30.0% |
| ! | TTTTTCCTTTGATTCCTCAT+TGG | - | chr2_4:58647210-58647229 | Msa0338400:three_prime_UTR | 30.0% |
| ! | TTTTCCTTTGATTCCTCATT+GGG | - | chr2_4:58647211-58647230 | Msa0338400:three_prime_UTR | 30.0% |
| AATGTATTAGTCGATAGGAT+AGG | + | chr2_4:58647276-58647295 | None:intergenic | 30.0% | |
| CAAAGAATGTATTAGTCGAT+AGG | + | chr2_4:58647281-58647300 | None:intergenic | 30.0% | |
| ACTTAAAGAGGATTTGAAGA+AGG | - | chr2_4:58647521-58647540 | Msa0338400:three_prime_UTR | 30.0% | |
| ACATGACAGAAATTTGGAAA+TGG | - | chr2_4:58647871-58647890 | Msa0338400:CDS | 30.0% | |
| TAAAATCAGAATTGAGTCAG+AGG | - | chr2_4:58648071-58648090 | Msa0338400:intron | 30.0% | |
| AAAATCAGAATTGAGTCAGA+GGG | - | chr2_4:58648072-58648091 | Msa0338400:intron | 30.0% | |
| ! | GAAAGAGAAATTGATGGATA+AGG | - | chr2_4:58648135-58648154 | Msa0338400:intron | 30.0% |
| AGAAAATGAAATGCTGAAGT+TGG | - | chr2_4:58648342-58648361 | Msa0338400:intron | 30.0% | |
| ! | TAGTAATATTGTGCTGTTAC+TGG | - | chr2_4:58648865-58648884 | Msa0338400:intron | 30.0% |
| GTGTATCAAACTATGTAGAA+AGG | + | chr2_4:58649003-58649022 | None:intergenic | 30.0% | |
| !! | ACACATGTGAGAAGTGTTAA+CGG | + | chr2_4:58646874-58646893 | None:intergenic | 35.0% |
| !! | AAAGCTGTTGGCTTAATACA+AGG | + | chr2_4:58646962-58646981 | None:intergenic | 35.0% |
| ! | GCTTTAATCTTTGACTTTGG+CGG | - | chr2_4:58646977-58646996 | Msa0338400:three_prime_UTR | 35.0% |
| ! | AAACACCGCATATTGTTGTT+AGG | - | chr2_4:58647001-58647020 | Msa0338400:three_prime_UTR | 35.0% |
| !! | GTGTTACTTCGTGATGTTAT+TGG | - | chr2_4:58647033-58647052 | Msa0338400:three_prime_UTR | 35.0% |
| ! | GATCTTAGATTTGTTTCGCA+GGG | - | chr2_4:58647090-58647109 | Msa0338400:three_prime_UTR | 35.0% |
| ATTTGTTTCGCAGGGATTTA+AGG | - | chr2_4:58647098-58647117 | Msa0338400:three_prime_UTR | 35.0% | |
| CAATTACGATTCATTTGTGC+CGG | - | chr2_4:58647171-58647190 | Msa0338400:three_prime_UTR | 35.0% | |
| AAATAAAAGTCTGTCCCATC+CGG | + | chr2_4:58647193-58647212 | None:intergenic | 35.0% | |
| TAATCCCAATGAGGAATCAA+AGG | + | chr2_4:58647218-58647237 | None:intergenic | 35.0% | |
| AATACTCTGTAATCCCAATG+AGG | + | chr2_4:58647227-58647246 | None:intergenic | 35.0% | |
| AAGAGGATTTGAAGAAGGTA+AGG | - | chr2_4:58647526-58647545 | Msa0338400:three_prime_UTR | 35.0% | |
| AGAGGATTTGAAGAAGGTAA+GGG | - | chr2_4:58647527-58647546 | Msa0338400:three_prime_UTR | 35.0% | |
| TGCTTATTGCATGATTCAGA+CGG | + | chr2_4:58647554-58647573 | None:intergenic | 35.0% | |
| GGAAATGGAATCTGAAAGAT+TGG | - | chr2_4:58647886-58647905 | Msa0338400:intron | 35.0% | |
| AAATCGAGTTTCGTTCTTTG+AGG | - | chr2_4:58647936-58647955 | Msa0338400:intron | 35.0% | |
| ! | TGTTCTGAATCTGTTCTTCT+TGG | + | chr2_4:58648012-58648031 | None:intergenic | 35.0% |
| AGAAGAACAGATTCAGAACA+CGG | - | chr2_4:58648012-58648031 | Msa0338400:intron | 35.0% | |
| !! | ATGCCTATGAGTTGATTGAA+CGG | - | chr2_4:58648047-58648066 | Msa0338400:intron | 35.0% |
| AAGAAAGAAAGCCGAAATTG+AGG | - | chr2_4:58648108-58648127 | Msa0338400:intron | 35.0% | |
| CTCTTTCAACTCCTCAATTT+CGG | + | chr2_4:58648122-58648141 | None:intergenic | 35.0% | |
| GGAGTTGAAAGAGAAATTGA+TGG | - | chr2_4:58648129-58648148 | Msa0338400:intron | 35.0% | |
| AAGGTTAGACGAATATGTAG+CGG | - | chr2_4:58648267-58648286 | Msa0338400:intron | 35.0% | |
| TGAAGTTGGAAATCAACAAG+AGG | - | chr2_4:58648356-58648375 | Msa0338400:intron | 35.0% | |
| ! | ACTTGATGGCATAATGAAAG+AGG | - | chr2_4:58648390-58648409 | Msa0338400:intron | 35.0% |
| ATTGAAGATAATGAAGGAGG+AGG | - | chr2_4:58648468-58648487 | Msa0338400:intron | 35.0% | |
| AGAGAAGAGCAATAGTAAGA+TGG | - | chr2_4:58648492-58648511 | Msa0338400:intron | 35.0% | |
| !!! | GGGAATGTTTTGAAGAAGAT+CGG | - | chr2_4:58648778-58648797 | Msa0338400:intron | 35.0% |
| ! | ATTCCTTCTTGCTATGTAAG+TGG | - | chr2_4:58648905-58648924 | Msa0338400:intron | 35.0% |
| ! | TAAAGTGCCTCAAACTCAGA+GGG | - | chr2_4:58646427-58646446 | Msa0338400:three_prime_UTR | 40.0% |
| GTGTTAGTGTCTAGTGAAGA+AGG | + | chr2_4:58646470-58646489 | None:intergenic | 40.0% | |
| ACAAGGAAACACTATACCTC+AGG | + | chr2_4:58646575-58646594 | None:intergenic | 40.0% | |
| GGCTACCTAACAACAATATG+CGG | + | chr2_4:58647009-58647028 | None:intergenic | 40.0% | |
| ACATCACGAAGTAACACGAT+TGG | + | chr2_4:58647030-58647049 | None:intergenic | 40.0% | |
| ! | GGATCTTAGATTTGTTTCGC+AGG | - | chr2_4:58647089-58647108 | Msa0338400:three_prime_UTR | 40.0% |
| AATAGCAGAATCGTCAGACA+CGG | - | chr2_4:58647637-58647656 | Msa0338400:three_prime_UTR | 40.0% | |
| GATTTGACTCTTCGCAATCT+TGG | + | chr2_4:58647730-58647749 | None:intergenic | 40.0% | |
| AGATTGCGAAGAGTCAAATC+AGG | - | chr2_4:58647730-58647749 | Msa0338400:three_prime_UTR | 40.0% | |
| CCAAATTTCTGTCATGTGCA+AGG | + | chr2_4:58647868-58647887 | None:intergenic | 40.0% | |
| CCTTGCACATGACAGAAATT+TGG | - | chr2_4:58647865-58647884 | Msa0338400:CDS | 40.0% | |
| TTCAGAACACGGTGAAGATT+AGG | - | chr2_4:58648023-58648042 | Msa0338400:intron | 40.0% | |
| !! | TGCCTATGAGTTGATTGAAC+GGG | - | chr2_4:58648048-58648067 | Msa0338400:intron | 40.0% |
| TACCCGTTCAATCAACTCAT+AGG | + | chr2_4:58648053-58648072 | None:intergenic | 40.0% | |
| GATAAGGAGAATGAGTTGCA+AGG | - | chr2_4:58648151-58648170 | Msa0338400:intron | 40.0% | |
| !! | GAATGAGTTGCAAGGTATTG+TGG | - | chr2_4:58648159-58648178 | Msa0338400:intron | 40.0% |
| GTATTGTGGATGAGAATGAG+AGG | - | chr2_4:58648173-58648192 | Msa0338400:intron | 40.0% | |
| ! | GAATATGTAGCGGCATTGAA+GGG | - | chr2_4:58648277-58648296 | Msa0338400:intron | 40.0% |
| !! | GAAGGGTGAAATGATGGATA+AGG | - | chr2_4:58648294-58648313 | Msa0338400:intron | 40.0% |
| AGGTTCACATTCACACTTGA+TGG | - | chr2_4:58648376-58648395 | Msa0338400:intron | 40.0% | |
| ! | AATCAACCAGTGGTTTTCTG+AGG | + | chr2_4:58648820-58648839 | None:intergenic | 40.0% |
| AGCACTTATGAATCAACCAG+TGG | + | chr2_4:58648830-58648849 | None:intergenic | 40.0% | |
| GATCCACTTACATAGCAAGA+AGG | + | chr2_4:58648911-58648930 | None:intergenic | 40.0% | |
| ! | CTAAAGTGCCTCAAACTCAG+AGG | - | chr2_4:58646426-58646445 | Msa0338400:three_prime_UTR | 45.0% |
| TACGATTCATTTGTGCCGGA+TGG | - | chr2_4:58647175-58647194 | Msa0338400:three_prime_UTR | 45.0% | |
| ACGATTCATTTGTGCCGGAT+GGG | - | chr2_4:58647176-58647195 | Msa0338400:three_prime_UTR | 45.0% | |
| CATGTATTCTGCTGCTGCTA+GGG | + | chr2_4:58647479-58647498 | None:intergenic | 45.0% | |
| TCATGTATTCTGCTGCTGCT+AGG | + | chr2_4:58647480-58647499 | None:intergenic | 45.0% | |
| CAGCAGCAGAATACATGAAG+TGG | - | chr2_4:58647482-58647501 | Msa0338400:three_prime_UTR | 45.0% | |
| GTCAAATCAGGCTCAACCTT+TGG | - | chr2_4:58647742-58647761 | Msa0338400:exon | 45.0% | |
| CGCAAAGTCTCATTCACCAA+AGG | + | chr2_4:58647761-58647780 | None:intergenic | 45.0% | |
| TGAGACTTTGCGACAACTTG+AGG | - | chr2_4:58647769-58647788 | Msa0338400:CDS | 45.0% | |
| !! | GTTTCGTTCTTTGAGGTCTG+AGG | - | chr2_4:58647943-58647962 | Msa0338400:intron | 45.0% |
| ! | GGTCTGAGGTTGAACTACTT+AGG | - | chr2_4:58647957-58647976 | Msa0338400:intron | 45.0% |
| GAGTCAGAGGGAATCTGAAT+TGG | - | chr2_4:58648084-58648103 | Msa0338400:intron | 45.0% | |
| ! | CGAATATGTAGCGGCATTGA+AGG | - | chr2_4:58648276-58648295 | Msa0338400:intron | 45.0% |
| ! | GGCATTGAAGGGTGAAATGA+TGG | - | chr2_4:58648288-58648307 | Msa0338400:intron | 45.0% |
| AGGAAGTTGCAGCCGAAATA+GGG | - | chr2_4:58648410-58648429 | Msa0338400:intron | 45.0% | |
| AGAGCAATAGTAAGATGGCG+AGG | - | chr2_4:58648497-58648516 | Msa0338400:intron | 45.0% | |
| GAGCAATAGTAAGATGGCGA+GGG | - | chr2_4:58648498-58648517 | Msa0338400:intron | 45.0% | |
| TCAAAGTGCAATGTGACCAG+TGG | - | chr2_4:58648584-58648603 | Msa0338400:intron | 45.0% | |
| ! | AGCTGCTGCTATGTTTTCAG+CGG | - | chr2_4:58648624-58648643 | Msa0338400:intron | 45.0% |
| ! | ATGTTTTCAGCGGGGAACAA+TGG | - | chr2_4:58648634-58648653 | Msa0338400:intron | 45.0% |
| ! | TGTTTTCAGCGGGGAACAAT+GGG | - | chr2_4:58648635-58648654 | Msa0338400:intron | 45.0% |
| TGCTGAGAGATCGATGTCTA+TGG | - | chr2_4:58648663-58648682 | Msa0338400:intron | 45.0% | |
| ! | TGAAGAAGATCGGTGTCTTG+TGG | - | chr2_4:58648788-58648807 | Msa0338400:intron | 45.0% |
| AAGAAGCCTCAGAAAACCAC+TGG | - | chr2_4:58648811-58648830 | Msa0338400:intron | 45.0% | |
| TGGCATACCCTCTGAGTTTG+AGG | + | chr2_4:58646437-58646456 | None:intergenic | 50.0% | |
| ! | AGAGGGTATGCCATCATCTC+AGG | - | chr2_4:58646444-58646463 | Msa0338400:three_prime_UTR | 50.0% |
| GTGAAGAAGGCCTGAGATGA+TGG | + | chr2_4:58646457-58646476 | None:intergenic | 50.0% | |
| TGATCTACGGTCGGTGACTA+TGG | + | chr2_4:58646537-58646556 | None:intergenic | 50.0% | |
| ! | GTTTCTGGGTGATCTACGGT+CGG | + | chr2_4:58646546-58646565 | None:intergenic | 50.0% |
| !! | CCGTGTTTCTGGGTGATCTA+CGG | + | chr2_4:58646550-58646569 | None:intergenic | 50.0% |
| CCGTAGATCACCCAGAAACA+CGG | - | chr2_4:58646547-58646566 | Msa0338400:three_prime_UTR | 50.0% | |
| GCAAGCTCATCAAGATGCCA+AGG | - | chr2_4:58647571-58647590 | Msa0338400:three_prime_UTR | 50.0% | |
| ACTCTTCGCAATCTTGGAGC+TGG | + | chr2_4:58647724-58647743 | None:intergenic | 50.0% | |
| GAGGAAGTTGCAGCCGAAAT+AGG | - | chr2_4:58648409-58648428 | Msa0338400:intron | 50.0% | |
| GGAAGTTGCAGCCGAAATAG+GGG | - | chr2_4:58648411-58648430 | Msa0338400:intron | 50.0% | |
| CAATAGTAAGATGGCGAGGG+TGG | - | chr2_4:58648501-58648520 | Msa0338400:intron | 50.0% | |
| AGCTGCACAAGTGGCGAATA+CGG | - | chr2_4:58648537-58648556 | Msa0338400:intron | 50.0% | |
| AAGTGCAATGTGACCAGTGG+AGG | - | chr2_4:58648587-58648606 | Msa0338400:intron | 50.0% | |
| ! | GCTGCTGCTATGTTTTCAGC+GGG | - | chr2_4:58648625-58648644 | Msa0338400:intron | 50.0% |
| ! | CTGCTGCTATGTTTTCAGCG+GGG | - | chr2_4:58648626-58648645 | Msa0338400:intron | 50.0% |
| ! | ACCTCAGGTGCCGTGTTTCT+GGG | + | chr2_4:58646560-58646579 | None:intergenic | 55.0% |
| ! | TACCTCAGGTGCCGTGTTTC+TGG | + | chr2_4:58646561-58646580 | None:intergenic | 55.0% |
| AGTTGCAGCCGAAATAGGGG+CGG | - | chr2_4:58648414-58648433 | Msa0338400:intron | 55.0% | |
| AGCCTTAGCCGCCCCTATTT+CGG | + | chr2_4:58648425-58648444 | None:intergenic | 55.0% | |
| GCAGTTGGAAGCTGCACAAG+TGG | - | chr2_4:58648528-58648547 | Msa0338400:intron | 55.0% | |
| GCAATGTGACCAGTGGAGGA+AGG | - | chr2_4:58648591-58648610 | Msa0338400:intron | 55.0% | |
| ACCCAGAAACACGGCACCTG+AGG | - | chr2_4:58646556-58646575 | Msa0338400:three_prime_UTR | 60.0% | |
| AGCCGAAATAGGGGCGGCTA+AGG | - | chr2_4:58648420-58648439 | Msa0338400:intron | 60.0% | |
| CCTCTGCAGCCTTCCTCCAC+TGG | + | chr2_4:58648603-58648622 | None:intergenic | 65.0% | |
| CCAGTGGAGGAAGGCTGCAG+AGG | - | chr2_4:58648600-58648619 | Msa0338400:intron | 65.0% | |
| GGCGAGGGTGGCTGAGCAGT+TGG | - | chr2_4:58648513-58648532 | Msa0338400:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 58646294 | 58649067 | 58646294 | ID=Msa0338400;Name=Msa0338400 |
| chr2_4 | mRNA | 58646294 | 58649067 | 58646294 | ID=Msa0338400-mRNA-1;Parent=Msa0338400;Name=Msa0338400-mRNA-1;_AED=0.06;_eAED=0.11;_QI=0|0|0.5|1|0|0|2|1459|97 |
| chr2_4 | exon | 58646294 | 58647891 | 58646294 | ID=Msa0338400-mRNA-1:exon:18101;Parent=Msa0338400-mRNA-1 |
| chr2_4 | exon | 58648913 | 58649067 | 58648913 | ID=Msa0338400-mRNA-1:exon:18100;Parent=Msa0338400-mRNA-1 |
| chr2_4 | CDS | 58648913 | 58649067 | 58648913 | ID=Msa0338400-mRNA-1:cds;Parent=Msa0338400-mRNA-1 |
| chr2_4 | CDS | 58647753 | 58647891 | 58647753 | ID=Msa0338400-mRNA-1:cds;Parent=Msa0338400-mRNA-1 |
| chr2_4 | three_prime_UTR | 58646294 | 58647752 | 58646294 | ID=Msa0338400-mRNA-1:three_prime_utr;Parent=Msa0338400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
