Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005890 | Msa0300860 | 0.808378 | 3.189319e-50 | -8.615850e-47 |
| Msa0018000 | Msa0300860 | 0.806780 | 6.966529e-50 | -8.615850e-47 |
| Msa0027820 | Msa0300860 | 0.803253 | 3.807837e-49 | -8.615850e-47 |
| Msa0049790 | Msa0300860 | 0.821990 | 3.009100e-53 | -8.615850e-47 |
| Msa0081520 | Msa0300860 | 0.801984 | 6.957986e-49 | -8.615850e-47 |
| Msa0097770 | Msa0300860 | 0.814316 | 1.639327e-51 | -8.615850e-47 |
| Msa0152400 | Msa0300860 | 0.806555 | 7.771942e-50 | -8.615850e-47 |
| Msa0173890 | Msa0300860 | 0.801430 | 9.038422e-49 | -8.615850e-47 |
| Msa0221000 | Msa0300860 | 0.820086 | 8.259678e-53 | -8.615850e-47 |
| Msa0221640 | Msa0300860 | 0.875537 | 2.849491e-68 | -8.615850e-47 |
| Msa0225100 | Msa0300860 | 0.808953 | 2.403737e-50 | -8.615850e-47 |
| Msa0225860 | Msa0300860 | 0.822979 | 1.772570e-53 | -8.615850e-47 |
| Msa0260510 | Msa0300860 | 0.805518 | 1.284289e-49 | -8.615850e-47 |
| Msa0263290 | Msa0300860 | 0.870022 | 1.997172e-66 | -8.615850e-47 |
| Msa0265850 | Msa0300860 | 0.838859 | 2.238006e-57 | -8.615850e-47 |
| Msa0266180 | Msa0300860 | 0.805521 | 1.282339e-49 | -8.615850e-47 |
| Msa0300270 | Msa0300860 | 0.846191 | 2.535936e-59 | -8.615850e-47 |
| Msa0300320 | Msa0300860 | 0.835636 | 1.495137e-56 | -8.615850e-47 |
| Msa0300860 | Msa0337700 | 0.846261 | 2.426495e-59 | -8.615850e-47 |
| Msa0300860 | Msa0338400 | 0.942750 | 4.127664e-102 | -8.615850e-47 |
| Msa0300860 | Msa0344930 | 0.801468 | 8.878181e-49 | -8.615850e-47 |
| Msa0300860 | Msa0371030 | 0.806845 | 6.747768e-50 | -8.615850e-47 |
| Msa0300860 | Msa0378720 | 0.827366 | 1.628066e-54 | -8.615850e-47 |
| Msa0300860 | Msa0385390 | 0.823813 | 1.131570e-53 | -8.615850e-47 |
| Msa0300860 | Msa0428580 | 0.808403 | 3.151118e-50 | -8.615850e-47 |
| Msa0300860 | Msa0432170 | 0.804031 | 2.625153e-49 | -8.615850e-47 |
| Msa0300860 | Msa0440440 | 0.805203 | 1.495132e-49 | -8.615850e-47 |
| Msa0300860 | Msa0474730 | 0.815712 | 8.031117e-52 | -8.615850e-47 |
| Msa0300860 | Msa0483100 | 0.815939 | 7.150074e-52 | -8.615850e-47 |
| Msa0300860 | Msa0521020 | 0.804668 | 1.934615e-49 | -8.615850e-47 |
| Msa0300860 | Msa0580370 | 0.808461 | 3.062722e-50 | -8.615850e-47 |
| Msa0300860 | Msa0626510 | 0.827160 | 1.823404e-54 | -8.615850e-47 |
| Msa0300860 | Msa0721080 | 0.804964 | 1.677541e-49 | -8.615850e-47 |
| Msa0300860 | Msa0727710 | 0.803509 | 3.369327e-49 | -8.615850e-47 |
| Msa0300860 | Msa0780270 | 0.814276 | 1.673064e-51 | -8.615850e-47 |
| Msa0300860 | Msa0795870 | 0.820565 | 6.414066e-53 | -8.615850e-47 |
| Msa0300860 | Msa0833650 | 0.811426 | 7.042676e-51 | -8.615850e-47 |
| Msa0300860 | Msa0861510 | 0.829996 | 3.765244e-55 | -8.615850e-47 |
| Msa0300860 | Msa0861530 | 0.819406 | 1.181033e-52 | -8.615850e-47 |
| Msa0300860 | Msa0861600 | 0.827803 | 1.278755e-54 | -8.615850e-47 |
| Msa0300860 | Msa0902510 | 0.822447 | 2.357522e-53 | -8.615850e-47 |
| Msa0300860 | Msa0941170 | 0.803647 | 3.155412e-49 | -8.615850e-47 |
| Msa0300860 | Msa0967380 | 0.816136 | 6.461663e-52 | -8.615850e-47 |
| Msa0300860 | Msa1019470 | 0.807930 | 3.972850e-50 | -8.615850e-47 |
| Msa0300860 | Msa1031930 | 0.823268 | 1.518050e-53 | -8.615850e-47 |
| Msa0300860 | Msa1071770 | 0.810936 | 8.996449e-51 | -8.615850e-47 |
| Msa0300860 | Msa1132840 | 0.812228 | 4.711769e-51 | -8.615850e-47 |
| Msa0300860 | Msa1158830 | 0.819042 | 1.429388e-52 | -8.615850e-47 |
| Msa0300860 | Msa1200890 | 0.808229 | 3.431025e-50 | -8.615850e-47 |
| Msa0300860 | Msa1208160 | 0.818089 | 2.350853e-52 | -8.615850e-47 |
| Msa0300860 | Msa1208430 | 0.840969 | 6.310303e-58 | -8.615850e-47 |
| Msa0300860 | Msa1228200 | 0.825414 | 4.750378e-54 | -8.615850e-47 |
| Msa0300860 | Msa1236410 | 0.803846 | 2.869198e-49 | -8.615850e-47 |
| Msa0300860 | Msa1258340 | 0.815213 | 1.037536e-51 | -8.615850e-47 |
| Msa0300860 | Msa1267770 | 0.822398 | 2.420192e-53 | -8.615850e-47 |
| Msa0300860 | Msa1276660 | 0.802020 | 6.838325e-49 | -8.615850e-47 |
| Msa0300860 | Msa1292590 | 0.801198 | 1.008255e-48 | -8.615850e-47 |
| Msa0300860 | Msa1298370 | 0.832104 | 1.143639e-55 | -8.615850e-47 |
| Msa0300860 | Msa1303250 | 0.820664 | 6.085344e-53 | -8.615850e-47 |
| Msa0300860 | Msa1320670 | 0.821618 | 3.668889e-53 | -8.615850e-47 |
| Msa0300860 | Msa1356830 | 0.803402 | 3.546136e-49 | -8.615850e-47 |
| Msa0300860 | Msa1440880 | 0.809506 | 1.829239e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 90 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAAACAGTTTCAAATCTA+AGG | 0.231560 | 2_3:+56465105 | None:intergenic |
| CCTTGCACATGACAGAAATT+TGG | 0.236291 | 2_3:-56466171 | Msa0300860:three_prime_UTR |
| TGTTCTGAATCTGTTCTTCT+TGG | 0.252805 | 2_3:+56466027 | None:intergenic |
| CTCTTTCAACTCCTCAATTT+CGG | 0.259232 | 2_3:+56465917 | None:intergenic |
| AATTTAAGAAGGAACTTAAA+AGG | 0.271917 | 2_3:-56465788 | Msa0300860:three_prime_UTR |
| GAGGAAGTTGCAGCCGAAAT+AGG | 0.279931 | 2_3:-56465627 | Msa0300860:three_prime_UTR |
| TAGTAATATTGTGCTGTTAC+TGG | 0.317109 | 2_3:-56465171 | Msa0300860:three_prime_UTR |
| AGGAAGTTGCAGCCGAAATA+GGG | 0.344945 | 2_3:-56465626 | Msa0300860:three_prime_UTR |
| AGCCTTAGCCGCCCCTATTT+CGG | 0.345352 | 2_3:+56465614 | None:intergenic |
| GTGAACATTATTTGATAAGT+TGG | 0.358867 | 2_3:-56465084 | Msa0300860:three_prime_UTR |
| TCAAAATTTGCAACTTAAAG+AGG | 0.372117 | 2_3:-56466527 | Msa0300860:CDS |
| GGAAATGGAATCTGAAAGAT+TGG | 0.377371 | 2_3:-56466150 | Msa0300860:three_prime_UTR |
| AAATCGAGTTTCGTTCTTTG+AGG | 0.377376 | 2_3:-56466100 | Msa0300860:three_prime_UTR |
| CCTCTGCAGCCTTCCTCCAC+TGG | 0.391085 | 2_3:+56465436 | None:intergenic |
| TGCTGAGAGATCGATGTCTA+TGG | 0.392123 | 2_3:-56465373 | Msa0300860:three_prime_UTR |
| AATGGTGAACCACTTATTAC+AGG | 0.397412 | 2_3:-56467732 | Msa0300860:CDS |
| CGAATATGTAGCGGCATTGA+AGG | 0.402492 | 2_3:-56465760 | Msa0300860:three_prime_UTR |
| TACCCGTTCAATCAACTCAT+AGG | 0.414385 | 2_3:+56465986 | None:intergenic |
| AGCTGCACAAGTGGCGAATA+CGG | 0.418623 | 2_3:-56465499 | Msa0300860:three_prime_UTR |
| GATTTGACTCTTCGCAATCT+TGG | 0.421704 | 2_3:+56466309 | None:intergenic |
| GAAAGAGAAACTGATGGATA+AGG | 0.425852 | 2_3:-56465901 | Msa0300860:three_prime_UTR |
| ATTCCTTCTTGCTATGTAAG+TGG | 0.431310 | 2_3:-56465131 | Msa0300860:three_prime_UTR |
| ACTCTTCGCAATCTTGGAGC+TGG | 0.432064 | 2_3:+56466315 | None:intergenic |
| GTCAAATCAGGCTCAACCTT+TGG | 0.433135 | 2_3:-56466294 | Msa0300860:three_prime_UTR |
| AGGTTCACATTCACACTTGA+TGG | 0.434703 | 2_3:-56465660 | Msa0300860:three_prime_UTR |
| TTCAGAACACGGTGAAGATT+AGG | 0.437521 | 2_3:-56466013 | Msa0300860:three_prime_UTR |
| GAGTCAGAGGGAATCTGAAT+TGG | 0.439408 | 2_3:-56465952 | Msa0300860:three_prime_UTR |
| TCATGTATTCTGCTGCTGCT+AGG | 0.442631 | 2_3:+56466559 | None:intergenic |
| TTCTTCTTGGAATTTAATCT+CGG | 0.445092 | 2_3:+56466040 | None:intergenic |
| AGCCGAAATAGGGGCGGCTA+AGG | 0.446269 | 2_3:-56465616 | Msa0300860:three_prime_UTR |
| AAGAGGATTTGAAGAAGGTA+AGG | 0.450428 | 2_3:-56466510 | Msa0300860:CDS |
| AGAAAATGAAATGCTGAAGT+TGG | 0.453858 | 2_3:-56465694 | Msa0300860:three_prime_UTR |
| TGGCATACCCTCTGAGTTTG+AGG | 0.466776 | 2_3:+56467591 | None:intergenic |
| CATGTATTCTGCTGCTGCTA+GGG | 0.469716 | 2_3:+56466560 | None:intergenic |
| GAAGGGTGAAATGATGGATA+AGG | 0.474988 | 2_3:-56465742 | Msa0300860:three_prime_UTR |
| ACATGACAGAAATTTGGAAA+TGG | 0.476384 | 2_3:-56466165 | Msa0300860:three_prime_UTR |
| GGCGAGGGTGGCTGAGCAGT+TGG | 0.485157 | 2_3:-56465523 | Msa0300860:three_prime_UTR |
| CCAAATTTCTGTCATGTGCA+AGG | 0.486872 | 2_3:+56466171 | None:intergenic |
| TGCCTATGAGTTGATTGAAC+GGG | 0.490287 | 2_3:-56465988 | Msa0300860:three_prime_UTR |
| AAACGTATGGCTTCAAGCTA+AGG | 0.498102 | 2_3:+56464981 | None:intergenic |
| CAAAACAGTTTCAAATCTAA+GGG | 0.501281 | 2_3:+56465106 | None:intergenic |
| AGATTGCGAAGAGTCAAATC+AGG | 0.512278 | 2_3:-56466306 | Msa0300860:three_prime_UTR |
| TAAAATCAGAATTGAGTCAG+AGG | 0.516246 | 2_3:-56465965 | Msa0300860:three_prime_UTR |
| TATCAATTCAAATTGAACCT+TGG | 0.521085 | 2_3:+56466448 | None:intergenic |
| ACTTAAAGAGGATTTGAAGA+AGG | 0.523150 | 2_3:-56466515 | Msa0300860:CDS |
| GTGTATCAAACTATGTAGAA+AGG | 0.523389 | 2_3:+56465036 | None:intergenic |
| CAATAAAGACCTGTAATAAG+TGG | 0.526909 | 2_3:+56467723 | None:intergenic |
| GGCATTGAAGGGTGAAATGA+TGG | 0.528551 | 2_3:-56465748 | Msa0300860:three_prime_UTR |
| GAATGAGTTGCAAGGTATTG+TGG | 0.528922 | 2_3:-56465877 | Msa0300860:three_prime_UTR |
| GGTCTGAGGTTGAACTACTT+AGG | 0.529666 | 2_3:-56466079 | Msa0300860:three_prime_UTR |
| CGAGACTTTGCGACAACTTG+AGG | 0.531400 | 2_3:-56466267 | Msa0300860:three_prime_UTR |
| CGCAAAGTCTCGTTCACCAA+AGG | 0.532285 | 2_3:+56466278 | None:intergenic |
| CCAGTGGAGGAAGGCTGCAG+AGG | 0.536334 | 2_3:-56465436 | Msa0300860:three_prime_UTR |
| CAGCAGCAGAATACATGAAG+TGG | 0.544712 | 2_3:-56466554 | Msa0300860:CDS |
| GTTTCGTTCTTTGAGGTCTG+AGG | 0.547517 | 2_3:-56466093 | Msa0300860:three_prime_UTR |
| TGCTAAATTGAAGATAATGA+AGG | 0.549188 | 2_3:-56465574 | Msa0300860:three_prime_UTR |
| ATTGAAGATAATGAAGGAGG+AGG | 0.554380 | 2_3:-56465568 | Msa0300860:three_prime_UTR |
| TGCTTATTGCATGATTCAGA+CGG | 0.555775 | 2_3:+56466485 | None:intergenic |
| CAATAGTAAGATGGCGAGGG+TGG | 0.558191 | 2_3:-56465535 | Msa0300860:three_prime_UTR |
| AGAGAAGAGCAATAGTAAGA+TGG | 0.561769 | 2_3:-56465544 | Msa0300860:three_prime_UTR |
| AAGAAAGAAAGCCGAAATTG+AGG | 0.562869 | 2_3:-56465928 | Msa0300860:three_prime_UTR |
| AAAAGAACAAGAATTTAAGA+AGG | 0.565174 | 2_3:-56465799 | Msa0300860:three_prime_UTR |
| TGAAGAAGATCGGTGTCTTG+TGG | 0.566112 | 2_3:-56465248 | Msa0300860:three_prime_UTR |
| ACTTGATGGCATAATGAAAG+AGG | 0.569458 | 2_3:-56465646 | Msa0300860:three_prime_UTR |
| CTAAAGTGCCTCAAACTCAG+AGG | 0.572186 | 2_3:-56467599 | Msa0300860:CDS |
| GGAGTTGAAAGAGAAACTGA+TGG | 0.581396 | 2_3:-56465907 | Msa0300860:three_prime_UTR |
| AGAGGATTTGAAGAAGGTAA+GGG | 0.581443 | 2_3:-56466509 | Msa0300860:CDS |
| AGAGCAATAGTAAGATGGCG+AGG | 0.583720 | 2_3:-56465539 | Msa0300860:three_prime_UTR |
| AAGTGCAATGTGACCAGTGG+AGG | 0.591281 | 2_3:-56465449 | Msa0300860:three_prime_UTR |
| GGAAGTTGCAGCCGAAATAG+GGG | 0.594864 | 2_3:-56465625 | Msa0300860:three_prime_UTR |
| GAATATGTAGCGGCATTGAA+GGG | 0.599247 | 2_3:-56465759 | Msa0300860:three_prime_UTR |
| AAGAAGCCTCAGAAAACCAC+TGG | 0.599355 | 2_3:-56465225 | Msa0300860:three_prime_UTR |
| TAAATTGAAGATAATGAAGG+AGG | 0.605982 | 2_3:-56465571 | Msa0300860:three_prime_UTR |
| GCAAGCTCATCAAGATGCCA+AGG | 0.608755 | 2_3:-56466465 | Msa0300860:CDS |
| TAAAGTGCCTCAAACTCAGA+GGG | 0.611581 | 2_3:-56467598 | Msa0300860:intron |
| GATCCACTTACATAGCAAGA+AGG | 0.612305 | 2_3:+56465128 | None:intergenic |
| GAGCAATAGTAAGATGGCGA+GGG | 0.612884 | 2_3:-56465538 | Msa0300860:three_prime_UTR |
| GCAGTTGGAAGCTGCACAAG+TGG | 0.614283 | 2_3:-56465508 | Msa0300860:three_prime_UTR |
| ATGCCTATGAGTTGATTGAA+CGG | 0.625428 | 2_3:-56465989 | Msa0300860:three_prime_UTR |
| GATAAGGAGAATGAGTTGCA+AGG | 0.626473 | 2_3:-56465885 | Msa0300860:three_prime_UTR |
| AAAATCAGAATTGAGTCAGA+GGG | 0.634007 | 2_3:-56465964 | Msa0300860:three_prime_UTR |
| TCAAAGTGCAATGTGACCAG+TGG | 0.649322 | 2_3:-56465452 | Msa0300860:three_prime_UTR |
| AGCACTTATGAATCAACCAG+TGG | 0.654911 | 2_3:+56465209 | None:intergenic |
| TGAAGTTGGAAATCAACAAG+AGG | 0.659003 | 2_3:-56465680 | Msa0300860:three_prime_UTR |
| GCAATGTGACCAGTGGAGGA+AGG | 0.665387 | 2_3:-56465445 | Msa0300860:three_prime_UTR |
| AAGGTTAGACGAATATGTAG+CGG | 0.667109 | 2_3:-56465769 | Msa0300860:three_prime_UTR |
| GTATTGTGGATGAGAATGAG+AGG | 0.675827 | 2_3:-56465863 | Msa0300860:three_prime_UTR |
| AATAGCAGAATCGTCAGACA+CGG | 0.686391 | 2_3:-56466399 | Msa0300860:three_prime_UTR |
| AGAAGAACAGATTCAGAACA+CGG | 0.689139 | 2_3:-56466024 | Msa0300860:three_prime_UTR |
| AGTTGCAGCCGAAATAGGGG+CGG | 0.692601 | 2_3:-56465622 | Msa0300860:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATTCAATTTTCAAAAT+TGG | + | chr2_3:56465535-56465554 | None:intergenic | 10.0% |
| !! | TTTCTATCATATATTAATCA+AGG | - | chr2_3:56465300-56465319 | Msa0300860:three_prime_UTR | 15.0% |
| !! | TTCTATCATATATTAATCAA+GGG | - | chr2_3:56465301-56465320 | Msa0300860:three_prime_UTR | 15.0% |
| !!! | TTTGTTTTAGGTTAATTTAT+TGG | - | chr2_3:56465834-56465853 | Msa0300860:three_prime_UTR | 15.0% |
| !!! | AGAATGTTTTTAAGTTTTAA+AGG | - | chr2_3:56466059-56466078 | Msa0300860:three_prime_UTR | 15.0% |
| !! | ATTTGCAAAGAAATAAAAAT+GGG | - | chr2_3:56467444-56467463 | Msa0300860:intron | 15.0% |
| !! | GTGAACAAAAGAAAAAATTT+CGG | + | chr2_3:56465064-56465083 | None:intergenic | 20.0% |
| !!! | TTGATGATGTTTTATGAAAT+TGG | + | chr2_3:56465199-56465218 | None:intergenic | 20.0% |
| !!! | CGTTTTACATTTATAAACAA+GGG | + | chr2_3:56465432-56465451 | None:intergenic | 20.0% |
| !!! | ACGTTTTACATTTATAAACA+AGG | + | chr2_3:56465433-56465452 | None:intergenic | 20.0% |
| !!! | TTTGAATGTTACTTTGTTTT+AGG | - | chr2_3:56465822-56465841 | Msa0300860:three_prime_UTR | 20.0% |
| !!! | ACAGAGTATTTTCATATATT+TGG | - | chr2_3:56465933-56465952 | Msa0300860:three_prime_UTR | 20.0% |
| !! | TGAACAAATTTCAAGAATTT+GGG | + | chr2_3:56466100-56466119 | None:intergenic | 20.0% |
| !! | AAAAGAACAAGAATTTAAGA+AGG | - | chr2_3:56466923-56466942 | Msa0300860:intron | 20.0% |
| !! | AATTTAAGAAGGAACTTAAA+AGG | - | chr2_3:56466934-56466953 | Msa0300860:intron | 20.0% |
| !! | GATTTGCAAAGAAATAAAAA+TGG | - | chr2_3:56467443-56467462 | Msa0300860:intron | 20.0% |
| ! | GAAAAAATTTCGGTGAATAA+CGG | + | chr2_3:56465054-56465073 | None:intergenic | 25.0% |
| ! | TGATAGAAAAACATGATACA+AGG | + | chr2_3:56465289-56465308 | None:intergenic | 25.0% |
| !!! | AGACTTCACTCTAAAATTAA+AGG | + | chr2_3:56465484-56465503 | None:intergenic | 25.0% |
| ! | TGTGATACTTTACAAAATTC+TGG | - | chr2_3:56465507-56465526 | Msa0300860:three_prime_UTR | 25.0% |
| ! | GTGATACTTTACAAAATTCT+GGG | - | chr2_3:56465508-56465527 | Msa0300860:three_prime_UTR | 25.0% |
| !!! | CAATTGAGTTTATTTTTGTG+AGG | - | chr2_3:56465755-56465774 | Msa0300860:three_prime_UTR | 25.0% |
| !!! | TATTTTTGTGAGGATCAAAT+TGG | - | chr2_3:56465765-56465784 | Msa0300860:three_prime_UTR | 25.0% |
| ! | CTGAACAAATTTCAAGAATT+TGG | + | chr2_3:56466101-56466120 | None:intergenic | 25.0% |
| ! | TCAAAATTTGCAACTTAAAG+AGG | - | chr2_3:56466195-56466214 | Msa0300860:three_prime_UTR | 25.0% |
| ! | TATCAATTCAAATTGAACCT+TGG | + | chr2_3:56466277-56466296 | None:intergenic | 25.0% |
| ! | TTCTTCTTGGAATTTAATCT+CGG | + | chr2_3:56466685-56466704 | None:intergenic | 25.0% |
| ! | TGCTAAATTGAAGATAATGA+AGG | - | chr2_3:56467148-56467167 | Msa0300860:intron | 25.0% |
| ! | TAAATTGAAGATAATGAAGG+AGG | - | chr2_3:56467151-56467170 | Msa0300860:intron | 25.0% |
| ! | CAAAACAGTTTCAAATCTAA+GGG | + | chr2_3:56467619-56467638 | None:intergenic | 25.0% |
| ! | ACAAAACAGTTTCAAATCTA+AGG | + | chr2_3:56467620-56467639 | None:intergenic | 25.0% |
| ! | GTGAACATTATTTGATAAGT+TGG | - | chr2_3:56467638-56467657 | Msa0300860:CDS | 25.0% |
| CAATAAAGACCTGTAATAAG+TGG | + | chr2_3:56465002-56465021 | None:intergenic | 30.0% | |
| AAACATCATCAAACGACAAA+AGG | - | chr2_3:56465207-56465226 | Msa0300860:three_prime_UTR | 30.0% | |
| TAGTCAAAGATTAAAGCTGT+TGG | + | chr2_3:56465671-56465690 | None:intergenic | 30.0% | |
| ! | ACAGCTTTAATCTTTGACTA+TGG | - | chr2_3:56465671-56465690 | Msa0300860:three_prime_UTR | 30.0% |
| ! | TGTTACTTCGTGATGTTATT+GGG | - | chr2_3:56465731-56465750 | Msa0300860:three_prime_UTR | 30.0% |
| ! | TTTTTCCTTTGATTCCTCAT+TGG | - | chr2_3:56465906-56465925 | Msa0300860:three_prime_UTR | 30.0% |
| ! | TTTTCCTTTGATTCCTCATT+GGG | - | chr2_3:56465907-56465926 | Msa0300860:three_prime_UTR | 30.0% |
| CAAAGAATGTATTAGTCGAT+AGG | + | chr2_3:56465972-56465991 | None:intergenic | 30.0% | |
| ACTTAAAGAGGATTTGAAGA+AGG | - | chr2_3:56466207-56466226 | Msa0300860:three_prime_UTR | 30.0% | |
| ACATGACAGAAATTTGGAAA+TGG | - | chr2_3:56466557-56466576 | Msa0300860:CDS | 30.0% | |
| TAAAATCAGAATTGAGTCAG+AGG | - | chr2_3:56466757-56466776 | Msa0300860:intron | 30.0% | |
| AAAATCAGAATTGAGTCAGA+GGG | - | chr2_3:56466758-56466777 | Msa0300860:intron | 30.0% | |
| AGAAAATGAAATGCTGAAGT+TGG | - | chr2_3:56467028-56467047 | Msa0300860:intron | 30.0% | |
| ! | TAGTAATATTGTGCTGTTAC+TGG | - | chr2_3:56467551-56467570 | Msa0300860:intron | 30.0% |
| GTGTATCAAACTATGTAGAA+AGG | + | chr2_3:56467689-56467708 | None:intergenic | 30.0% | |
| !! | ACACATGTGAGAAGTGTTAA+CGG | + | chr2_3:56465571-56465590 | None:intergenic | 35.0% |
| !! | AAAGCTGTTGGCTTAATACA+AGG | + | chr2_3:56465659-56465678 | None:intergenic | 35.0% |
| GCTTTAATCTTTGACTATGG+CGG | - | chr2_3:56465674-56465693 | Msa0300860:three_prime_UTR | 35.0% | |
| ! | AAACACCGCATATTGTTGTT+AGG | - | chr2_3:56465698-56465717 | Msa0300860:three_prime_UTR | 35.0% |
| !! | GTGTTACTTCGTGATGTTAT+TGG | - | chr2_3:56465730-56465749 | Msa0300860:three_prime_UTR | 35.0% |
| ! | GATCTTAGATTTGTTTCGCA+GGG | - | chr2_3:56465787-56465806 | Msa0300860:three_prime_UTR | 35.0% |
| ATTTGTTTCGCAGGGATTTA+AGG | - | chr2_3:56465795-56465814 | Msa0300860:three_prime_UTR | 35.0% | |
| CAATTACGATTCATTTGTGC+CGG | - | chr2_3:56465868-56465887 | Msa0300860:three_prime_UTR | 35.0% | |
| AAAATAAAAGTCTGTCCCAC+CGG | + | chr2_3:56465890-56465909 | None:intergenic | 35.0% | |
| TAATCCCAATGAGGAATCAA+AGG | + | chr2_3:56465914-56465933 | None:intergenic | 35.0% | |
| AATACTCTGTAATCCCAATG+AGG | + | chr2_3:56465923-56465942 | None:intergenic | 35.0% | |
| AAGAGGATTTGAAGAAGGTA+AGG | - | chr2_3:56466212-56466231 | Msa0300860:three_prime_UTR | 35.0% | |
| AGAGGATTTGAAGAAGGTAA+GGG | - | chr2_3:56466213-56466232 | Msa0300860:three_prime_UTR | 35.0% | |
| TGCTTATTGCATGATTCAGA+CGG | + | chr2_3:56466240-56466259 | None:intergenic | 35.0% | |
| GGAAATGGAATCTGAAAGAT+TGG | - | chr2_3:56466572-56466591 | Msa0300860:intron | 35.0% | |
| AAATCGAGTTTCGTTCTTTG+AGG | - | chr2_3:56466622-56466641 | Msa0300860:intron | 35.0% | |
| ! | TGTTCTGAATCTGTTCTTCT+TGG | + | chr2_3:56466698-56466717 | None:intergenic | 35.0% |
| AGAAGAACAGATTCAGAACA+CGG | - | chr2_3:56466698-56466717 | Msa0300860:intron | 35.0% | |
| !! | ATGCCTATGAGTTGATTGAA+CGG | - | chr2_3:56466733-56466752 | Msa0300860:intron | 35.0% |
| AAGAAAGAAAGCCGAAATTG+AGG | - | chr2_3:56466794-56466813 | Msa0300860:intron | 35.0% | |
| CTCTTTCAACTCCTCAATTT+CGG | + | chr2_3:56466808-56466827 | None:intergenic | 35.0% | |
| ! | GAAAGAGAAACTGATGGATA+AGG | - | chr2_3:56466821-56466840 | Msa0300860:intron | 35.0% |
| AAGGTTAGACGAATATGTAG+CGG | - | chr2_3:56466953-56466972 | Msa0300860:intron | 35.0% | |
| TGAAGTTGGAAATCAACAAG+AGG | - | chr2_3:56467042-56467061 | Msa0300860:intron | 35.0% | |
| ! | ACTTGATGGCATAATGAAAG+AGG | - | chr2_3:56467076-56467095 | Msa0300860:intron | 35.0% |
| ATTGAAGATAATGAAGGAGG+AGG | - | chr2_3:56467154-56467173 | Msa0300860:intron | 35.0% | |
| AGAGAAGAGCAATAGTAAGA+TGG | - | chr2_3:56467178-56467197 | Msa0300860:intron | 35.0% | |
| !!! | GGGAATGTTTTGAAGAAGAT+CGG | - | chr2_3:56467464-56467483 | Msa0300860:intron | 35.0% |
| ! | ATTCCTTCTTGCTATGTAAG+TGG | - | chr2_3:56467591-56467610 | Msa0300860:intron | 35.0% |
| ! | TAAAGTGCCTCAAACTCAGA+GGG | - | chr2_3:56465124-56465143 | Msa0300860:three_prime_UTR | 40.0% |
| GTGTTAGTGTCTAGTGAAGA+AGG | + | chr2_3:56465167-56465186 | None:intergenic | 40.0% | |
| ACAAGGAAACACTATACCTC+AGG | + | chr2_3:56465272-56465291 | None:intergenic | 40.0% | |
| GGCTACCTAACAACAATATG+CGG | + | chr2_3:56465706-56465725 | None:intergenic | 40.0% | |
| ACATCACGAAGTAACACGAT+TGG | + | chr2_3:56465727-56465746 | None:intergenic | 40.0% | |
| ! | GGATCTTAGATTTGTTTCGC+AGG | - | chr2_3:56465786-56465805 | Msa0300860:three_prime_UTR | 40.0% |
| AATAGCAGAATCGTCAGACA+CGG | - | chr2_3:56466323-56466342 | Msa0300860:three_prime_UTR | 40.0% | |
| GATTTGACTCTTCGCAATCT+TGG | + | chr2_3:56466416-56466435 | None:intergenic | 40.0% | |
| AGATTGCGAAGAGTCAAATC+AGG | - | chr2_3:56466416-56466435 | Msa0300860:three_prime_UTR | 40.0% | |
| CCAAATTTCTGTCATGTGCA+AGG | + | chr2_3:56466554-56466573 | None:intergenic | 40.0% | |
| CCTTGCACATGACAGAAATT+TGG | - | chr2_3:56466551-56466570 | Msa0300860:CDS | 40.0% | |
| TTCAGAACACGGTGAAGATT+AGG | - | chr2_3:56466709-56466728 | Msa0300860:intron | 40.0% | |
| !! | TGCCTATGAGTTGATTGAAC+GGG | - | chr2_3:56466734-56466753 | Msa0300860:intron | 40.0% |
| TACCCGTTCAATCAACTCAT+AGG | + | chr2_3:56466739-56466758 | None:intergenic | 40.0% | |
| GGAGTTGAAAGAGAAACTGA+TGG | - | chr2_3:56466815-56466834 | Msa0300860:intron | 40.0% | |
| GATAAGGAGAATGAGTTGCA+AGG | - | chr2_3:56466837-56466856 | Msa0300860:intron | 40.0% | |
| !! | GAATGAGTTGCAAGGTATTG+TGG | - | chr2_3:56466845-56466864 | Msa0300860:intron | 40.0% |
| GTATTGTGGATGAGAATGAG+AGG | - | chr2_3:56466859-56466878 | Msa0300860:intron | 40.0% | |
| ! | GAATATGTAGCGGCATTGAA+GGG | - | chr2_3:56466963-56466982 | Msa0300860:intron | 40.0% |
| !! | GAAGGGTGAAATGATGGATA+AGG | - | chr2_3:56466980-56466999 | Msa0300860:intron | 40.0% |
| AGGTTCACATTCACACTTGA+TGG | - | chr2_3:56467062-56467081 | Msa0300860:intron | 40.0% | |
| ! | AATCAACCAGTGGTTTTCTG+AGG | + | chr2_3:56467506-56467525 | None:intergenic | 40.0% |
| AGCACTTATGAATCAACCAG+TGG | + | chr2_3:56467516-56467535 | None:intergenic | 40.0% | |
| GATCCACTTACATAGCAAGA+AGG | + | chr2_3:56467597-56467616 | None:intergenic | 40.0% | |
| ! | CTAAAGTGCCTCAAACTCAG+AGG | - | chr2_3:56465123-56465142 | Msa0300860:three_prime_UTR | 45.0% |
| TTACGATTCATTTGTGCCGG+TGG | - | chr2_3:56465871-56465890 | Msa0300860:three_prime_UTR | 45.0% | |
| ! | TACGATTCATTTGTGCCGGT+GGG | - | chr2_3:56465872-56465891 | Msa0300860:three_prime_UTR | 45.0% |
| CATGTATTCTGCTGCTGCTA+GGG | + | chr2_3:56466165-56466184 | None:intergenic | 45.0% | |
| TCATGTATTCTGCTGCTGCT+AGG | + | chr2_3:56466166-56466185 | None:intergenic | 45.0% | |
| CAGCAGCAGAATACATGAAG+TGG | - | chr2_3:56466168-56466187 | Msa0300860:three_prime_UTR | 45.0% | |
| GTCAAATCAGGCTCAACCTT+TGG | - | chr2_3:56466428-56466447 | Msa0300860:three_prime_UTR | 45.0% | |
| !! | GTTTCGTTCTTTGAGGTCTG+AGG | - | chr2_3:56466629-56466648 | Msa0300860:intron | 45.0% |
| ! | GGTCTGAGGTTGAACTACTT+AGG | - | chr2_3:56466643-56466662 | Msa0300860:intron | 45.0% |
| GAGTCAGAGGGAATCTGAAT+TGG | - | chr2_3:56466770-56466789 | Msa0300860:intron | 45.0% | |
| ! | CGAATATGTAGCGGCATTGA+AGG | - | chr2_3:56466962-56466981 | Msa0300860:intron | 45.0% |
| ! | GGCATTGAAGGGTGAAATGA+TGG | - | chr2_3:56466974-56466993 | Msa0300860:intron | 45.0% |
| AGGAAGTTGCAGCCGAAATA+GGG | - | chr2_3:56467096-56467115 | Msa0300860:intron | 45.0% | |
| AGAGCAATAGTAAGATGGCG+AGG | - | chr2_3:56467183-56467202 | Msa0300860:intron | 45.0% | |
| GAGCAATAGTAAGATGGCGA+GGG | - | chr2_3:56467184-56467203 | Msa0300860:intron | 45.0% | |
| TCAAAGTGCAATGTGACCAG+TGG | - | chr2_3:56467270-56467289 | Msa0300860:intron | 45.0% | |
| ! | AGCTGCTGCTATGTTTTCAG+CGG | - | chr2_3:56467310-56467329 | Msa0300860:intron | 45.0% |
| ! | ATGTTTTCAGCGGGGAACAA+TGG | - | chr2_3:56467320-56467339 | Msa0300860:intron | 45.0% |
| ! | TGTTTTCAGCGGGGAACAAT+GGG | - | chr2_3:56467321-56467340 | Msa0300860:intron | 45.0% |
| TGCTGAGAGATCGATGTCTA+TGG | - | chr2_3:56467349-56467368 | Msa0300860:intron | 45.0% | |
| ! | TGAAGAAGATCGGTGTCTTG+TGG | - | chr2_3:56467474-56467493 | Msa0300860:intron | 45.0% |
| AAGAAGCCTCAGAAAACCAC+TGG | - | chr2_3:56467497-56467516 | Msa0300860:intron | 45.0% | |
| TGGCATACCCTCTGAGTTTG+AGG | + | chr2_3:56465134-56465153 | None:intergenic | 50.0% | |
| ! | AGAGGGTATGCCATCATCTC+AGG | - | chr2_3:56465141-56465160 | Msa0300860:three_prime_UTR | 50.0% |
| GTGAAGAAGGCCTGAGATGA+TGG | + | chr2_3:56465154-56465173 | None:intergenic | 50.0% | |
| TGATCTACGGTCGGTGACTA+TGG | + | chr2_3:56465234-56465253 | None:intergenic | 50.0% | |
| ! | GTTTCTGGGTGATCTACGGT+CGG | + | chr2_3:56465243-56465262 | None:intergenic | 50.0% |
| !! | CCGTGTTTCTGGGTGATCTA+CGG | + | chr2_3:56465247-56465266 | None:intergenic | 50.0% |
| CCGTAGATCACCCAGAAACA+CGG | - | chr2_3:56465244-56465263 | Msa0300860:three_prime_UTR | 50.0% | |
| GCAAGCTCATCAAGATGCCA+AGG | - | chr2_3:56466257-56466276 | Msa0300860:three_prime_UTR | 50.0% | |
| ACTCTTCGCAATCTTGGAGC+TGG | + | chr2_3:56466410-56466429 | None:intergenic | 50.0% | |
| CGCAAAGTCTCGTTCACCAA+AGG | + | chr2_3:56466447-56466466 | None:intergenic | 50.0% | |
| CGAGACTTTGCGACAACTTG+AGG | - | chr2_3:56466455-56466474 | Msa0300860:CDS | 50.0% | |
| GAGGAAGTTGCAGCCGAAAT+AGG | - | chr2_3:56467095-56467114 | Msa0300860:intron | 50.0% | |
| GGAAGTTGCAGCCGAAATAG+GGG | - | chr2_3:56467097-56467116 | Msa0300860:intron | 50.0% | |
| CAATAGTAAGATGGCGAGGG+TGG | - | chr2_3:56467187-56467206 | Msa0300860:intron | 50.0% | |
| AGCTGCACAAGTGGCGAATA+CGG | - | chr2_3:56467223-56467242 | Msa0300860:intron | 50.0% | |
| AAGTGCAATGTGACCAGTGG+AGG | - | chr2_3:56467273-56467292 | Msa0300860:intron | 50.0% | |
| ! | GCTGCTGCTATGTTTTCAGC+GGG | - | chr2_3:56467311-56467330 | Msa0300860:intron | 50.0% |
| ! | CTGCTGCTATGTTTTCAGCG+GGG | - | chr2_3:56467312-56467331 | Msa0300860:intron | 50.0% |
| ! | ACCTCAGGTGCCGTGTTTCT+GGG | + | chr2_3:56465257-56465276 | None:intergenic | 55.0% |
| ! | TACCTCAGGTGCCGTGTTTC+TGG | + | chr2_3:56465258-56465277 | None:intergenic | 55.0% |
| AGTTGCAGCCGAAATAGGGG+CGG | - | chr2_3:56467100-56467119 | Msa0300860:intron | 55.0% | |
| AGCCTTAGCCGCCCCTATTT+CGG | + | chr2_3:56467111-56467130 | None:intergenic | 55.0% | |
| GCAGTTGGAAGCTGCACAAG+TGG | - | chr2_3:56467214-56467233 | Msa0300860:intron | 55.0% | |
| GCAATGTGACCAGTGGAGGA+AGG | - | chr2_3:56467277-56467296 | Msa0300860:intron | 55.0% | |
| ACCCAGAAACACGGCACCTG+AGG | - | chr2_3:56465253-56465272 | Msa0300860:three_prime_UTR | 60.0% | |
| AGCCGAAATAGGGGCGGCTA+AGG | - | chr2_3:56467106-56467125 | Msa0300860:intron | 60.0% | |
| CCTCTGCAGCCTTCCTCCAC+TGG | + | chr2_3:56467289-56467308 | None:intergenic | 65.0% | |
| CCAGTGGAGGAAGGCTGCAG+AGG | - | chr2_3:56467286-56467305 | Msa0300860:intron | 65.0% | |
| GGCGAGGGTGGCTGAGCAGT+TGG | - | chr2_3:56467199-56467218 | Msa0300860:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 56464991 | 56467753 | 56464991 | ID=Msa0300860;Name=Msa0300860 |
| chr2_3 | mRNA | 56464991 | 56467753 | 56464991 | ID=Msa0300860-mRNA-1;Parent=Msa0300860;Name=Msa0300860-mRNA-1;_AED=0.06;_eAED=0.11;_QI=0|0|0.5|1|0|0|2|1459|97 |
| chr2_3 | exon | 56464991 | 56466588 | 56464991 | ID=Msa0300860-mRNA-1:exon:18093;Parent=Msa0300860-mRNA-1 |
| chr2_3 | exon | 56467599 | 56467753 | 56467599 | ID=Msa0300860-mRNA-1:exon:18092;Parent=Msa0300860-mRNA-1 |
| chr2_3 | CDS | 56467599 | 56467753 | 56467599 | ID=Msa0300860-mRNA-1:cds;Parent=Msa0300860-mRNA-1 |
| chr2_3 | CDS | 56466450 | 56466588 | 56466450 | ID=Msa0300860-mRNA-1:cds;Parent=Msa0300860-mRNA-1 |
| chr2_3 | three_prime_UTR | 56464991 | 56466449 | 56464991 | ID=Msa0300860-mRNA-1:three_prime_utr;Parent=Msa0300860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
