AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0428370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0428370 MtrunA17_Chr3g0131731 92.043 465 10 3 1 439 1 464 0.0 867
Msa0428370 MtrunA17_Chr8g0385871 75.271 461 83 6 5 439 10 465 0.0 698
Msa0428370 MtrunA17_Chr7g0221551 68.035 463 113 5 1 439 9 460 0.0 645
Msa0428370 MtrunA17_Chr3g0094811 58.636 440 153 5 24 439 23 457 0.0 551
Msa0428370 MtrunA17_Chr2g0304931 57.407 432 155 6 29 436 36 462 2.22e-177 504
Msa0428370 MtrunA17_Chr3g0126051 44.091 440 207 7 30 437 32 464 2.45e-132 389
Msa0428370 MtrunA17_Chr1g0204191 47.018 436 173 10 27 436 87 490 1.03e-131 389
Msa0428370 MtrunA17_Chr3g0126031 44.064 438 206 8 30 436 27 456 8.37e-129 380
Msa0428370 MtrunA17_Chr5g0431301 44.545 440 205 9 30 436 28 461 2.32e-128 379
Msa0428370 MtrunA17_Chr3g0118851 45.070 426 198 10 29 432 75 486 7.91e-115 345
Msa0428370 MtrunA17_Chr3g0118841 44.706 425 200 11 29 432 76 486 1.13e-111 337
Msa0428370 MtrunA17_Chr7g0219051 40.333 481 229 10 3 439 1 467 3.24e-111 335
Msa0428370 MtrunA17_Chr3g0118881 42.694 438 207 12 29 436 75 498 5.04e-108 328
Msa0428370 MtrunA17_Chr1g0199991 38.095 462 239 12 9 436 8 456 2.77e-107 325
Msa0428370 MtrunA17_Chr4g0020241 41.860 430 213 10 30 436 72 487 8.04e-107 325
Msa0428370 MtrunA17_Chr3g0090331 42.494 433 208 13 30 436 73 490 8.48e-107 325
Msa0428370 MtrunA17_Chr3g0118831 41.387 447 201 10 9 436 55 459 3.79e-102 312
Msa0428370 MtrunA17_Chr2g0309521 37.204 465 248 10 5 438 13 464 8.04e-102 311
Msa0428370 MtrunA17_Chr4g0068841 39.693 456 213 11 29 436 36 477 1.03e-101 311
Msa0428370 MtrunA17_Chr1g0199971 38.412 466 240 13 5 436 4 456 1.23e-101 310
Msa0428370 MtrunA17_Chr3g0118891 41.608 423 184 11 29 432 75 453 1.36e-101 310
Msa0428370 MtrunA17_Chr1g0153881 40.141 426 224 9 30 438 88 499 2.09e-101 311
Msa0428370 MtrunA17_Chr2g0309511 37.849 465 245 11 5 438 13 464 4.87e-101 309
Msa0428370 MtrunA17_Chr4g0038311 38.739 444 224 13 30 437 33 464 9.24e-99 303
Msa0428370 MtrunA17_Chr1g0153941 38.106 454 223 10 29 438 75 514 6.19e-98 303
Msa0428370 MtrunA17_Chr2g0309541 38.303 436 225 10 35 438 42 465 7.60e-98 301
Msa0428370 MtrunA17_Chr1g0165811 52.768 271 122 4 4 274 3 267 2.60e-97 293
Msa0428370 MtrunA17_Chr4g0047861 38.496 452 221 12 29 438 51 487 3.89e-95 295
Msa0428370 MtrunA17_Chr3g0118861 40.509 432 191 13 28 432 72 464 4.23e-95 294
Msa0428370 MtrunA17_Chr2g0281621 37.580 471 240 12 6 436 9 465 1.81e-94 292
Msa0428370 MtrunA17_Chr2g0318911 36.774 465 240 14 3 432 14 459 7.45e-92 286
Msa0428370 MtrunA17_Chr4g0068861 35.854 410 203 10 28 391 81 476 2.76e-81 258
Msa0428370 MtrunA17_Chr2g0281641 36.709 395 198 11 84 438 7 389 1.19e-77 246
Msa0428370 MtrunA17_Chr1g0153931 55.914 186 76 3 29 209 73 257 5.60e-67 215
Msa0428370 MtrunA17_Chr8g0338461 31.384 513 256 16 1 435 1 495 7.92e-64 213
Msa0428370 MtrunA17_Chr1g0165821 61.146 157 52 2 285 437 28 179 5.14e-60 193
Msa0428370 MtrunA17_Chr7g0234051 30.178 507 265 16 3 435 4 495 1.30e-57 197
Msa0428370 MtrunA17_Chr4g0009701 29.333 450 263 14 27 435 35 470 1.49e-55 191
Msa0428370 MtrunA17_Chr4g0009661 28.634 454 261 15 27 435 35 470 3.11e-53 184
Msa0428370 MtrunA17_Chr4g0009651 27.753 454 265 14 27 435 35 470 3.27e-53 184
Msa0428370 MtrunA17_Chr7g0249431 31.458 480 244 18 32 435 28 498 9.98e-53 184
Msa0428370 MtrunA17_Chr2g0285371 27.887 459 275 13 21 435 23 469 4.41e-52 181
Msa0428370 MtrunA17_Chr4g0009681 28.664 464 277 14 13 435 17 467 8.57e-52 181
Msa0428370 MtrunA17_Chr4g0009671 29.263 434 254 13 42 435 15 435 7.33e-51 177
Msa0428370 MtrunA17_Chr4g0009711 27.660 470 284 16 7 435 16 470 1.63e-50 177
Msa0428370 MtrunA17_Chr2g0285351 28.662 471 276 16 9 435 15 469 3.86e-49 174
Msa0428370 MtrunA17_Chr4g0028271 31.204 407 246 15 48 432 99 493 3.09e-48 172
Msa0428370 MtrunA17_Chr2g0285381 27.468 466 261 14 21 435 26 465 1.32e-47 169
Msa0428370 MtrunA17_Chr4g0028241 30.456 417 240 15 49 433 92 490 1.88e-47 169
Msa0428370 MtrunA17_Chr7g0229651 42.574 202 90 3 209 384 1 202 1.89e-47 162
Msa0428370 MtrunA17_Chr3g0133011 27.926 487 279 13 9 435 22 496 2.05e-47 169
Msa0428370 MtrunA17_Chr2g0327401 28.501 407 260 14 48 433 102 498 3.37e-47 169
Msa0428370 MtrunA17_Chr1g0171411 28.404 426 242 14 44 432 81 480 6.21e-47 168
Msa0428370 MtrunA17_Chr1g0199171 29.340 409 251 15 48 432 92 486 2.17e-46 167
Msa0428370 MtrunA17_Chr4g0009641 27.056 462 273 13 7 435 16 446 9.98e-46 164
Msa0428370 MtrunA17_Chr4g0028261 29.762 420 260 15 37 433 109 516 1.04e-45 166
Msa0428370 MtrunA17_Chr7g0234041 30.213 470 224 18 3 394 1 444 1.70e-45 164
Msa0428370 MtrunA17_Chr4g0028281 29.224 438 265 16 19 433 77 492 6.55e-45 163
Msa0428370 MtrunA17_Chr2g0327371 25.280 447 253 15 49 433 86 513 5.88e-36 139
Msa0428370 MtrunA17_Chr3g0093971 24.943 437 276 13 32 430 27 449 9.51e-36 137
Msa0428370 MtrunA17_Chr4g0009721 26.517 445 231 16 29 435 33 419 1.17e-34 133
Msa0428370 MtrunA17_Chr5g0447441 27.416 445 279 16 9 430 9 432 1.41e-34 134
Msa0428370 MtrunA17_Chr7g0229631 65.909 88 28 2 30 117 32 117 1.84e-33 123
Msa0428370 MtrunA17_Chr2g0327381 25.000 452 263 16 48 433 96 537 2.50e-33 131
Msa0428370 MtrunA17_Chr4g0044051 26.941 438 281 16 17 430 14 436 3.81e-31 124
Msa0428370 MtrunA17_Chr7g0229611 64.865 74 24 2 31 104 25 96 2.62e-26 102
Msa0428370 MtrunA17_Chr7g0229621 64.000 75 25 2 30 104 24 96 5.86e-26 101
Msa0428370 MtrunA17_Chr4g0027731 26.464 427 262 13 49 431 36 454 1.02e-25 108
Msa0428370 MtrunA17_Chr2g0279371 32.787 183 98 5 29 204 25 189 1.37e-24 100
Msa0428370 MtrunA17_Chr1g0153921 28.879 232 131 7 225 438 3 218 2.33e-24 100
Msa0428370 MtrunA17_Chr7g0264221 48.889 90 44 2 351 439 13 101 2.21e-20 86.3
Msa0428370 MtrunA17_Chr2g0320571 36.129 155 92 3 49 201 36 185 1.32e-14 75.5
Msa0428370 MtrunA17_Chr4g0006541 39.506 81 46 1 186 266 7 84 3.07e-14 68.6
Msa0428370 MtrunA17_Chr2g0281631 51.786 56 26 1 29 84 43 97 6.66e-13 65.5
Msa0428370 MtrunA17_Chr7g0229641 61.765 34 13 0 161 194 45 78 8.48e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0428370 AT1G28110.1 74.312 436 86 4 28 439 28 461 0.0 673
Msa0428370 AT1G28110.2 74.312 436 86 4 28 439 28 461 0.0 673
Msa0428370 AT2G33530.1 71.071 439 99 4 27 439 29 465 0.0 653
Msa0428370 AT1G43780.1 47.727 440 194 8 30 437 36 471 4.01e-137 402
Msa0428370 AT2G12480.4 45.067 446 219 9 3 436 2 433 1.91e-131 386
Msa0428370 AT5G42240.1 46.591 440 196 9 30 436 31 464 1.43e-130 385
Msa0428370 AT2G12480.1 44.843 446 218 9 3 436 2 431 4.05e-130 383
Msa0428370 AT2G12480.3 43.777 466 220 10 3 436 2 457 8.07e-130 383
Msa0428370 AT5G42230.1 43.656 465 226 9 3 436 1 460 2.72e-129 382
Msa0428370 AT5G42230.2 43.656 465 226 9 3 436 1 460 2.72e-129 382
Msa0428370 AT2G12480.2 44.743 447 218 10 3 436 2 432 2.00e-128 379
Msa0428370 AT2G24010.1 41.723 441 211 10 30 439 29 454 4.89e-110 332
Msa0428370 AT4G30610.1 38.854 471 235 10 8 439 9 465 1.91e-109 331
Msa0428370 AT3G02110.1 41.319 455 210 11 27 438 33 473 1.02e-108 329
Msa0428370 AT2G35780.1 39.374 447 224 11 22 436 20 451 3.84e-108 327
Msa0428370 AT3G07990.1 40.455 440 215 10 30 436 32 457 1.29e-107 326
Msa0428370 AT2G24000.1 40.355 451 213 13 30 439 29 464 7.30e-105 319
Msa0428370 AT2G24010.2 40.132 456 212 11 30 439 29 469 1.59e-104 318
Msa0428370 AT2G05850.1 38.549 441 223 10 30 438 62 486 2.16e-104 318
Msa0428370 AT2G35770.1 39.220 436 223 11 30 436 36 458 1.49e-102 313
Msa0428370 AT3G17180.1 40.044 457 210 10 28 436 35 475 4.47e-102 312
Msa0428370 AT1G61130.1 39.286 476 232 16 1 436 2 460 1.00e-101 311
Msa0428370 AT5G08260.1 38.689 473 213 13 19 436 26 476 1.95e-101 311
Msa0428370 AT2G24010.3 37.996 479 211 12 32 439 2 465 1.16e-98 303
Msa0428370 AT3G63470.1 39.588 437 219 11 30 438 80 499 1.06e-97 302
Msa0428370 AT3G52000.1 38.813 438 221 12 30 438 62 481 6.46e-97 299
Msa0428370 AT4G15100.1 37.267 483 235 15 6 435 13 480 1.29e-96 299
Msa0428370 AT4G30810.1 35.699 465 243 13 10 435 14 461 9.32e-96 296
Msa0428370 AT5G23210.1 36.575 473 227 14 22 436 38 495 9.90e-95 294
Msa0428370 AT1G11080.1 38.816 456 215 14 30 436 49 489 1.22e-94 294
Msa0428370 AT1G11080.2 38.816 456 215 14 30 436 49 489 1.44e-94 294
Msa0428370 AT3G52010.1 37.923 443 232 12 25 438 58 486 2.38e-94 293
Msa0428370 AT3G52020.1 36.927 436 231 12 30 436 78 498 6.64e-88 276
Msa0428370 AT3G17180.2 38.278 418 194 10 28 397 35 436 4.19e-85 267
Msa0428370 AT5G23210.3 35.748 428 203 12 22 391 38 451 9.73e-81 257
Msa0428370 AT5G23210.5 34.878 410 199 12 81 436 5 400 2.86e-72 233
Msa0428370 AT2G24010.4 37.808 365 171 9 32 350 2 356 2.82e-71 229
Msa0428370 AT5G23210.2 34.729 406 197 12 85 436 8 399 4.91e-71 230
Msa0428370 AT2G22990.1 31.455 426 249 11 35 435 26 433 4.36e-64 213
Msa0428370 AT3G25420.1 31.762 488 251 14 21 435 16 494 2.70e-62 209
Msa0428370 AT2G22980.1 31.163 430 262 14 24 435 17 430 6.02e-62 207
Msa0428370 AT3G10450.1 31.395 430 254 13 29 435 26 437 1.30e-60 204
Msa0428370 AT4G12910.1 30.724 511 258 15 1 432 1 494 1.86e-60 205
Msa0428370 AT1G73300.1 31.250 432 259 14 26 435 26 441 9.75e-60 201
Msa0428370 AT1G73300.2 31.250 432 259 14 26 435 26 441 9.75e-60 201
Msa0428370 AT1G73290.1 31.481 432 256 16 26 435 25 438 1.16e-58 199
Msa0428370 AT2G23000.1 30.752 439 249 13 29 435 22 437 1.57e-58 198
Msa0428370 AT2G23000.2 30.752 439 249 13 29 435 22 437 1.57e-58 198
Msa0428370 AT3G12203.3 30.806 422 254 12 35 435 12 416 1.86e-58 197
Msa0428370 AT2G22970.1 31.616 427 245 14 35 435 28 433 2.80e-58 197
Msa0428370 AT3G12203.1 30.806 422 254 12 35 435 33 437 4.13e-58 197
Msa0428370 AT2G22990.5 30.516 426 244 12 35 435 26 424 7.43e-58 196
Msa0428370 AT2G22920.2 30.337 445 258 16 21 435 13 435 9.24e-58 196
Msa0428370 AT3G10450.2 31.540 409 239 13 50 435 4 394 1.35e-57 194
Msa0428370 AT5G36180.1 30.986 426 261 13 29 435 30 441 2.31e-57 195
Msa0428370 AT2G23010.1 30.197 457 265 14 11 435 3 437 3.56e-57 194
Msa0428370 AT1G73280.1 29.095 464 277 16 1 435 1 441 5.30e-57 194
Msa0428370 AT5G23210.4 33.518 361 173 11 85 391 8 355 5.43e-57 192
Msa0428370 AT2G22990.4 31.500 400 232 10 35 409 26 408 8.52e-57 193
Msa0428370 AT2G22990.3 31.421 401 233 10 35 410 26 409 1.56e-56 193
Msa0428370 AT2G23010.2 29.978 457 266 14 11 435 3 437 1.70e-56 193
Msa0428370 AT3G12240.1 32.339 436 247 15 28 435 21 436 6.24e-56 191
Msa0428370 AT3G12220.1 32.648 438 243 16 28 435 20 435 9.78e-56 191
Msa0428370 AT3G12230.1 31.494 435 252 13 28 435 20 435 1.29e-55 191
Msa0428370 AT2G22980.2 31.111 405 246 13 24 410 17 406 3.19e-55 189
Msa0428370 AT2G22980.4 30.751 413 253 13 24 418 17 414 6.04e-55 189
Msa0428370 AT3G12203.2 31.061 396 235 12 61 435 1 379 1.13e-54 186
Msa0428370 AT1G73310.1 29.861 432 265 14 26 435 26 441 2.19e-54 187
Msa0428370 AT1G33540.1 29.890 455 255 14 29 435 26 464 4.29e-54 187
Msa0428370 AT1G73270.2 29.099 433 260 13 29 435 30 441 4.18e-53 184
Msa0428370 AT1G73270.1 29.099 433 260 13 29 435 30 441 6.96e-53 184
Msa0428370 AT3G10450.4 30.864 405 240 12 29 410 26 413 1.08e-52 182
Msa0428370 AT3G12220.2 32.446 413 230 15 50 435 15 405 2.21e-52 181
Msa0428370 AT3G45010.1 30.660 424 251 16 37 433 92 499 4.05e-52 183
Msa0428370 AT5G09640.1 28.256 453 262 13 32 435 27 465 6.55e-52 181
Msa0428370 AT1G33540.2 29.724 434 241 14 50 435 4 421 1.29e-51 179
Msa0428370 AT2G22970.4 31.343 402 230 13 35 410 28 409 6.44e-51 177
Msa0428370 AT3G12220.3 31.148 427 212 17 28 435 20 383 7.04e-51 176
Msa0428370 AT2G22970.3 30.806 422 245 14 35 430 28 428 1.74e-50 177
Msa0428370 AT4G12910.2 40.755 265 142 6 1 253 1 262 4.44e-50 176
Msa0428370 AT5G22980.1 29.904 418 256 17 39 433 91 494 7.12e-50 177
Msa0428370 AT3G10450.3 30.990 384 225 12 50 410 4 370 1.02e-49 173
Msa0428370 AT3G56540.1 53.165 158 69 4 30 185 78 232 7.24e-49 167
Msa0428370 AT2G22920.1 29.950 404 232 15 21 394 13 395 5.81e-46 164
Msa0428370 AT1G73290.3 30.691 391 232 15 26 394 25 398 1.70e-45 163
Msa0428370 AT3G10410.1 29.691 421 253 17 37 431 90 493 5.10e-44 161
Msa0428370 AT1G73310.2 28.861 395 244 13 26 398 26 405 1.86e-43 158
Msa0428370 AT2G22980.3 33.443 305 177 11 24 313 17 310 6.02e-42 152
Msa0428370 AT2G24000.2 31.922 307 157 10 172 439 108 401 2.40e-41 151
Msa0428370 AT2G24000.2 55.556 90 36 3 30 116 29 117 1.22e-21 96.7
Msa0428370 AT1G73290.2 33.447 293 171 11 26 304 25 307 3.86e-41 149
Msa0428370 AT2G22990.6 29.254 335 202 9 119 435 2 319 5.37e-41 149
Msa0428370 AT2G22920.4 32.907 313 177 11 21 313 13 312 1.39e-40 147
Msa0428370 AT2G22990.2 28.955 335 203 9 119 435 2 319 2.34e-40 147
Msa0428370 AT2G22970.2 33.007 306 173 10 35 321 28 320 8.19e-40 145
Msa0428370 AT1G73280.2 34.118 255 155 6 1 245 1 252 1.84e-38 143
Msa0428370 AT5G36180.5 28.824 340 217 10 108 435 13 339 3.14e-37 139
Msa0428370 AT5G36180.3 28.824 340 217 10 108 435 13 339 3.14e-37 139
Msa0428370 AT1G73280.4 27.353 340 222 11 108 435 13 339 4.02e-36 136
Msa0428370 AT1G73280.3 27.217 327 213 11 121 435 1 314 9.36e-33 126
Msa0428370 AT1G15000.1 27.764 407 258 16 48 435 37 426 1.84e-31 125
Msa0428370 AT2G22980.5 27.815 302 194 10 119 410 2 289 1.08e-29 117
Msa0428370 AT5G36180.2 27.937 315 203 9 108 410 13 315 1.59e-29 117
Msa0428370 AT2G27920.1 27.014 422 244 15 49 419 37 445 3.91e-28 116
Msa0428370 AT1G73310.3 25.902 305 198 9 108 398 13 303 1.31e-24 103
Msa0428370 AT5G22960.1 34.302 172 88 6 37 205 25 174 4.40e-24 99.4
Msa0428370 AT5G36180.4 27.517 298 192 9 108 393 13 298 2.47e-23 100
Msa0428370 AT2G22920.3 26.740 273 159 11 185 435 3 256 4.46e-20 89.7
Msa0428370 AT2G27920.2 25.587 383 223 14 86 419 4 373 2.55e-19 89.7

Find 97 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCAAAACCTCTTGTTCTT+TGG 0.209048 3_2:-79208056 Msa0428370:CDS
TACTGATTATTAGATATTAA+AGG 0.220981 3_2:+79204837 None:intergenic
ACCTCTTTGTTCAAAGGTTA+TGG 0.222269 3_2:-79206911 Msa0428370:CDS
AGAGGCAAACATGCTTTATT+TGG 0.233598 3_2:-79207834 Msa0428370:CDS
CGTGCTATTCAAATCATTCT+TGG 0.238356 3_2:-79204953 Msa0428370:CDS
AATTCACCATTTGGTCTAAA+TGG 0.239444 3_2:+79207976 None:intergenic
AGAGAAACAAAACACTTTAA+AGG 0.246230 3_2:+79208224 None:intergenic
GGTGGGTGGACTCAAGTTTA+TGG 0.246369 3_2:-79205048 Msa0428370:CDS
AACAAGATATTCAATCTTAA+AGG 0.249651 3_2:-79207179 Msa0428370:CDS
GACAAAATTGTTACCCTTCC+TGG 0.252638 3_2:-79208186 Msa0428370:CDS
ACACTTCCTACCTGTAAATT+AGG 0.255971 3_2:+79206030 None:intergenic
AACAGAGATTTGTTTCTAAC+TGG 0.261748 3_2:-79207347 Msa0428370:CDS
CAACAGTTCCTTACAGAGTA+TGG 0.262408 3_2:-79205817 Msa0428370:CDS
AATAGCACGAGTGATCTTTC+AGG 0.286784 3_2:+79204967 None:intergenic
ATACAAGGTCATTACTCTTT+AGG 0.287449 3_2:-79204576 Msa0428370:three_prime_UTR
CCTCTTGTTCTTTGGCTCAA+TGG 0.297305 3_2:-79208048 Msa0428370:CDS
CCTCTTTGTTCAAAGGTTAT+GGG 0.297500 3_2:-79206910 Msa0428370:CDS
GAGTTAAGGTCCTAATTTAC+AGG 0.298396 3_2:-79206040 Msa0428370:intron
ATTCAAGGGCTGAATTCTTT+TGG 0.305209 3_2:-79207029 Msa0428370:CDS
GGACCTGGTTGTTCTTCTCT+TGG 0.328407 3_2:-79208024 Msa0428370:CDS
GTAGGTGCATTCTCAGAAAA+TGG 0.330444 3_2:-79208000 Msa0428370:CDS
AATGAACATAGTTGGAATAA+AGG 0.338350 3_2:-79207943 Msa0428370:intron
TTAATAAGAAATTCACCATT+TGG 0.361078 3_2:+79207967 None:intergenic
CAAAAGGTTGAAAACCAAAA+AGG 0.369573 3_2:+79204743 None:intergenic
CTTTGGCTCAATGGAGGACC+TGG 0.390446 3_2:-79208039 Msa0428370:CDS
TATGTCTTTAAATCCATTGT+TGG 0.393903 3_2:+79204600 None:intergenic
TCAGTTGCATATTCTAGAAC+TGG 0.396182 3_2:+79207057 None:intergenic
ACTTGTTGAACCAACGTTCC+AGG 0.404293 3_2:+79207384 None:intergenic
GCACTTCATGCAAAACTTGT+TGG 0.416149 3_2:-79206484 Msa0428370:CDS
AAGGGACAATCTTGTATTCC+TGG 0.417025 3_2:-79207402 Msa0428370:CDS
AAATCTCTGTTTCTATATTG+AGG 0.417674 3_2:+79207359 None:intergenic
TTTATCAATGATCCAACAAC+AGG 0.423621 3_2:+79206068 None:intergenic
GTATAGAGAGAAAGAGTGAT+GGG 0.424629 3_2:+79208309 None:intergenic
AGGTTACAAACTACTTAAAC+AGG 0.431883 3_2:-79206522 Msa0428370:CDS
CTAAATAGTAAACACACAAA+AGG 0.432283 3_2:+79204890 None:intergenic
CCTTACAGAGTATGGTTTGA+AGG 0.432469 3_2:-79205809 Msa0428370:CDS
CTCTGTGCTGTCACAGTCCA+AGG 0.436842 3_2:-79206821 Msa0428370:intron
ATTGATAAAAGCTGGAGTTA+AGG 0.446975 3_2:-79206054 Msa0428370:CDS
GGTTGTTCTTCTCTTGGAGT+AGG 0.448812 3_2:-79208018 Msa0428370:CDS
GTGCCAACACTTCCTGTTGT+TGG 0.450313 3_2:-79206080 Msa0428370:CDS
TAAGAAAATCCAACTCCAAC+TGG 0.455371 3_2:+79207806 None:intergenic
TAAAGAAACTAGTAGATTTG+TGG 0.457756 3_2:-79206878 Msa0428370:CDS
ATGCAACTGATTTCAATTCA+AGG 0.458582 3_2:-79207044 Msa0428370:CDS
AGGGTGTGTCAGAAAACTTC+AGG 0.465152 3_2:+79204916 None:intergenic
CTCTCATTTGCCACAGTGAG+AGG 0.471001 3_2:-79205018 Msa0428370:CDS
TTGTTCAAAGGTTATGGGAT+TGG 0.472351 3_2:-79206905 Msa0428370:CDS
ATAGCCTTTCAACAATTCTC+AGG 0.473579 3_2:-79208150 Msa0428370:CDS
AATGGACCATTTAGACCAAA+TGG 0.474826 3_2:-79207982 Msa0428370:CDS
ATCATAAGCTTTGCAAGTTG+AGG 0.475887 3_2:+79207218 None:intergenic
AGTATGGTTTGAAGGCCAAC+AGG 0.477560 3_2:-79205801 Msa0428370:intron
TTTAATGAAACTTAGGTTGG+TGG 0.479581 3_2:-79205066 Msa0428370:intron
CCTTCAAACCATACTCTGTA+AGG 0.483426 3_2:+79205809 None:intergenic
GGACTATGATGTGCTTAACT+TGG 0.489157 3_2:-79206105 Msa0428370:CDS
CTATACTCTTCTCTCTCTCA+TGG 0.491043 3_2:-79208292 Msa0428370:exon
AGTATAGAGAGAAAGAGTGA+TGG 0.493963 3_2:+79208308 None:intergenic
ATAGAGAGAAAGAGTGATGG+GGG 0.496619 3_2:+79208311 None:intergenic
GATCTTTCAGGCTGTGAGAA+AGG 0.497374 3_2:+79204979 None:intergenic
TTGGAGACACCAGTTGGAGT+TGG 0.500117 3_2:-79207815 Msa0428370:CDS
ATCTTGTATTCCTGGAACGT+TGG 0.501196 3_2:-79207394 Msa0428370:CDS
CTTGTTCTTTGGCTCAATGG+AGG 0.503534 3_2:-79208045 Msa0428370:CDS
CTAACTGGGGAAAGTTATGC+AGG 0.506489 3_2:-79207332 Msa0428370:intron
GACTCGGTGATTCCACTGAC+TGG 0.508042 3_2:-79205887 Msa0428370:CDS
TGCAACTGATTTCAATTCAA+GGG 0.511117 3_2:-79207043 Msa0428370:CDS
TCAAATCATTCTTGGAAGGA+AGG 0.513553 3_2:-79204945 Msa0428370:CDS
TAAATAGTAAACACACAAAA+GGG 0.515682 3_2:+79204891 None:intergenic
TTAATGAAACTTAGGTTGGT+GGG 0.518560 3_2:-79205065 Msa0428370:intron
ACAGAGATTTGTTTCTAACT+GGG 0.518718 3_2:-79207346 Msa0428370:CDS
CTTTATTTGGAGACACCAGT+TGG 0.520213 3_2:-79207821 Msa0428370:CDS
AGTTTCACCTCTTTGTTCAA+AGG 0.523708 3_2:-79206917 Msa0428370:CDS
GTTGGATCATTGATAAAAGC+TGG 0.524225 3_2:-79206062 Msa0428370:CDS
GTTGTTGAAGAGAATGCAAG+TGG 0.534035 3_2:-79204645 Msa0428370:three_prime_UTR
ACAGTGAATGACGAGGAAAC+AGG 0.535990 3_2:-79207755 Msa0428370:intron
TGTCAGAAAACTTCAGGTAA+AGG 0.539128 3_2:+79204922 None:intergenic
GTAAACACACAAAAGGGAAA+GGG 0.559233 3_2:+79204897 None:intergenic
TAATATCTAATAATCAGTAA+AGG 0.565877 3_2:-79204833 Msa0428370:three_prime_UTR
CAGAGATTTGTTTCTAACTG+GGG 0.566111 3_2:-79207345 Msa0428370:CDS
CCCATAACCTTTGAACAAAG+AGG 0.567501 3_2:+79206910 None:intergenic
AAGCTTCTGCTTCCAGTCAG+TGG 0.568377 3_2:+79205875 None:intergenic
GATCCAACAACAGGAAGTGT+TGG 0.570777 3_2:+79206077 None:intergenic
AGTAAACACACAAAAGGGAA+AGG 0.571309 3_2:+79204896 None:intergenic
CCATTGAGCCAAAGAACAAG+AGG 0.575023 3_2:+79208048 None:intergenic
CTATTCAAATCATTCTTGGA+AGG 0.581750 3_2:-79204949 Msa0428370:CDS
AGTTAAGCACATCATAGTCC+AGG 0.589846 3_2:+79206108 None:intergenic
AACTCAAACTCGTTGCAGAT+CGG 0.593466 3_2:-79204536 Msa0428370:three_prime_UTR
ATGAAACTTAGGTTGGTGGG+TGG 0.608032 3_2:-79205062 Msa0428370:intron
TATAGAGAGAAAGAGTGATG+GGG 0.618775 3_2:+79208310 None:intergenic
ATATCCTGAGAATTGTTGAA+AGG 0.621984 3_2:+79208146 None:intergenic
TAGAGAGAAAGAGTGATGGG+GGG 0.638949 3_2:+79208312 None:intergenic
TAATAATCAGTAAAGGAATG+TGG 0.639265 3_2:-79204826 Msa0428370:three_prime_UTR
CTACAGTGGAGATCAAGACT+CGG 0.646625 3_2:-79205903 Msa0428370:intron
GATTTAAAGACATAAATACA+AGG 0.658495 3_2:-79204591 Msa0428370:three_prime_UTR
TCTCATGGCAATGACAACAA+TGG 0.663515 3_2:-79208277 Msa0428370:exon
AAACAGGAGAGATGTGCAAG+AGG 0.664395 3_2:-79206506 Msa0428370:CDS
ACTCCAAGAGAAGAACAACC+AGG 0.669050 3_2:+79208021 None:intergenic
ATGTGCAGCACCTCTCACTG+TGG 0.718656 3_2:+79205008 None:intergenic
TACAACAACAGTGAATGACG+AGG 0.719486 3_2:-79207762 Msa0428370:CDS
CTTGGACTGTGACAGCACAG+AGG 0.766016 3_2:+79206822 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAACTTGTAATTTTATT+AGG - chr3_2:79206595-79206614 Msa0428370:intron 10.0%
!!! TATAAATTTTAATGAAACTT+AGG - chr3_2:79207774-79207793 Msa0428370:CDS 10.0%
!! TTATTAAAAATGAACATAGT+TGG - chr3_2:79204896-79204915 Msa0428370:three_prime_UTR 15.0%
!!! TCATTATTATTGAATCTTTT+TGG - chr3_2:79205118-79205137 Msa0428370:intron 15.0%
!!! TTATGTTTTTATACTTTCTT+AGG - chr3_2:79205208-79205227 Msa0428370:intron 15.0%
!! AAATTCTGTCAAATTATTAT+TGG + chr3_2:79206162-79206181 None:intergenic 15.0%
!! ATTAATATATATTTACCTGT+TGG + chr3_2:79207064-79207083 None:intergenic 15.0%
!!! TACTGATTATTAGATATTAA+AGG + chr3_2:79208013-79208032 None:intergenic 15.0%
!! TAATATCTAATAATCAGTAA+AGG - chr3_2:79208014-79208033 Msa0428370:CDS 15.0%
!! TTAATAAGAAATTCACCATT+TGG + chr3_2:79204883-79204902 None:intergenic 20.0%
!!! ACATATTTTGTAATCTGAAA+CGG - chr3_2:79205401-79205420 Msa0428370:intron 20.0%
!!! TTTTTTGAATTGTTAAGCAA+GGG - chr3_2:79205427-79205446 Msa0428370:intron 20.0%
!! AAAATTTATGCATGTATTTC+AGG - chr3_2:79205596-79205615 Msa0428370:intron 20.0%
!! AACAAGATATTCAATCTTAA+AGG - chr3_2:79205668-79205687 Msa0428370:intron 20.0%
!! CTTAGAATAAAAGTTAAATG+TGG - chr3_2:79206465-79206484 Msa0428370:intron 20.0%
!! AGAATAAATCAAAAAACAGA+AGG + chr3_2:79206852-79206871 None:intergenic 20.0%
!!! AATTTTAATGAAACTTAGGT+TGG - chr3_2:79207778-79207797 Msa0428370:CDS 20.0%
!! TAAATAGTAAACACACAAAA+GGG + chr3_2:79207959-79207978 None:intergenic 20.0%
!! GATTTAAAGACATAAATACA+AGG - chr3_2:79208256-79208275 Msa0428370:CDS 20.0%
! AGAGAAACAAAACACTTTAA+AGG + chr3_2:79204626-79204645 None:intergenic 25.0%
! AATGAACATAGTTGGAATAA+AGG - chr3_2:79204904-79204923 Msa0428370:three_prime_UTR 25.0%
!! GTTGGATTTTCTTATGTTAA+AGG - chr3_2:79205050-79205069 Msa0428370:CDS 25.0%
!! CTTTTAAATCCTACTTCTAT+TGG - chr3_2:79205170-79205189 Msa0428370:intron 25.0%
!!! CTTTTTTGAATTGTTAAGCA+AGG - chr3_2:79205426-79205445 Msa0428370:intron 25.0%
!!! AAATCTCTGTTTCTATATTG+AGG + chr3_2:79205491-79205510 None:intergenic 25.0%
!!! CATGTTTTAAATAGCAGTAA+AGG + chr3_2:79205552-79205571 None:intergenic 25.0%
! TAAAGAAACTAGTAGATTTG+TGG - chr3_2:79205969-79205988 Msa0428370:intron 25.0%
! AAAGTTAAATGTGGTTTATG+CGG - chr3_2:79206474-79206493 Msa0428370:intron 25.0%
!! AGAAATCACTGTCAAAATTT+TGG - chr3_2:79207107-79207126 Msa0428370:intron 25.0%
! ACTCTTTGGATCTAATAAAA+GGG - chr3_2:79207486-79207505 Msa0428370:intron 25.0%
! TTATAATCTAAACATAGCCT+CGG - chr3_2:79207541-79207560 Msa0428370:intron 25.0%
! CTAAATAGTAAACACACAAA+AGG + chr3_2:79207960-79207979 None:intergenic 25.0%
! TAATAATCAGTAAAGGAATG+TGG - chr3_2:79208021-79208040 Msa0428370:CDS 25.0%
!!! TATTTCTTTTTTGGCCTTTT+TGG - chr3_2:79208090-79208109 Msa0428370:CDS 25.0%
!!! GATTCTTGTTCTAAGTTTTT+GGG - chr3_2:79208224-79208243 Msa0428370:CDS 25.0%
! TATGTCTTTAAATCCATTGT+TGG + chr3_2:79208250-79208269 None:intergenic 25.0%
ATATCCTGAGAATTGTTGAA+AGG + chr3_2:79204704-79204723 None:intergenic 30.0%
AATTCACCATTTGGTCTAAA+TGG + chr3_2:79204874-79204893 None:intergenic 30.0%
!!! AGTTATTTTTTGTGTTGCAG+AGG - chr3_2:79204995-79205014 Msa0428370:CDS 30.0%
!!! CTACTTTTTCCAATAGAAGT+AGG + chr3_2:79205182-79205201 None:intergenic 30.0%
! TGATATCAGTATGATGATGA+TGG - chr3_2:79205369-79205388 Msa0428370:intron 30.0%
!! AACAGAGATTTGTTTCTAAC+TGG - chr3_2:79205500-79205519 Msa0428370:intron 30.0%
!! ACAGAGATTTGTTTCTAACT+GGG - chr3_2:79205501-79205520 Msa0428370:intron 30.0%
TCAACAGCTAGAAAATTGTA+AGG + chr3_2:79205742-79205761 None:intergenic 30.0%
TACCAAAATTGAATTGCAGT+TGG - chr3_2:79205762-79205781 Msa0428370:intron 30.0%
ACCAAAATTGAATTGCAGTT+GGG - chr3_2:79205763-79205782 Msa0428370:intron 30.0%
! ATGCAACTGATTTCAATTCA+AGG - chr3_2:79205803-79205822 Msa0428370:CDS 30.0%
! TGCAACTGATTTCAATTCAA+GGG - chr3_2:79205804-79205823 Msa0428370:CDS 30.0%
TGAAATGATAGATGTATGTG+TGG - chr3_2:79206296-79206315 Msa0428370:intron 30.0%
AGGTTACAAACTACTTAAAC+AGG - chr3_2:79206325-79206344 Msa0428370:intron 30.0%
!!! AAGGTTTTAAATTGCAGTTG+TGG - chr3_2:79206426-79206445 Msa0428370:intron 30.0%
!!! GTTATTTTAGCTTAGTGAGA+AGG + chr3_2:79206582-79206601 None:intergenic 30.0%
TTTATCAATGATCCAACAAC+AGG + chr3_2:79206782-79206801 None:intergenic 30.0%
ATTGATAAAAGCTGGAGTTA+AGG - chr3_2:79206793-79206812 Msa0428370:intron 30.0%
! TATTCTGTTGCTTAAACTAG+AGG - chr3_2:79206866-79206885 Msa0428370:CDS 30.0%
! ATTCTGTTGCTTAAACTAGA+GGG - chr3_2:79206867-79206886 Msa0428370:CDS 30.0%
CAGAAGCTTAGTTCAAAAAT+TGG - chr3_2:79206986-79207005 Msa0428370:CDS 30.0%
CAAAAATTGGCTAGACAATT+AGG - chr3_2:79206999-79207018 Msa0428370:CDS 30.0%
! CTTTCTGGTCACTTATAAAA+TGG + chr3_2:79207135-79207154 None:intergenic 30.0%
ATTGAGACGTCATTTAACTA+AGG + chr3_2:79207427-79207446 None:intergenic 30.0%
TTAGTTAAATGACGTCTCAA+TGG - chr3_2:79207426-79207445 Msa0428370:intron 30.0%
CACTCTTTGGATCTAATAAA+AGG - chr3_2:79207485-79207504 Msa0428370:intron 30.0%
!! ATAAAAGGGTGCTTAGATAT+AGG - chr3_2:79207500-79207519 Msa0428370:intron 30.0%
!! TAAAAGGGTGCTTAGATATA+GGG - chr3_2:79207501-79207520 Msa0428370:intron 30.0%
!! TTTAATGAAACTTAGGTTGG+TGG - chr3_2:79207781-79207800 Msa0428370:CDS 30.0%
!! TTAATGAAACTTAGGTTGGT+GGG - chr3_2:79207782-79207801 Msa0428370:CDS 30.0%
CTATTCAAATCATTCTTGGA+AGG - chr3_2:79207898-79207917 Msa0428370:intron 30.0%
AGAATGTCAAAAAGAAAAGC+TGG - chr3_2:79208056-79208075 Msa0428370:CDS 30.0%
CAAAAGGTTGAAAACCAAAA+AGG + chr3_2:79208107-79208126 None:intergenic 30.0%
CACAAAAACTCAAGTACAAA+AGG + chr3_2:79208123-79208142 None:intergenic 30.0%
!! GGATTCTTGTTCTAAGTTTT+TGG - chr3_2:79208223-79208242 Msa0428370:CDS 30.0%
ATACAAGGTCATTACTCTTT+AGG - chr3_2:79208271-79208290 Msa0428370:CDS 30.0%
!! CCTATTTAAAAAGTGTCGAA+TGG + chr3_2:79208347-79208366 None:intergenic 30.0%
!! CCATTCGACACTTTTTAAAT+AGG - chr3_2:79208344-79208363 Msa0428370:five_prime_UTR 30.0%
TATAGAGAGAAAGAGTGATG+GGG + chr3_2:79204540-79204559 None:intergenic 35.0%
GTATAGAGAGAAAGAGTGAT+GGG + chr3_2:79204541-79204560 None:intergenic 35.0%
AGTATAGAGAGAAAGAGTGA+TGG + chr3_2:79204542-79204561 None:intergenic 35.0%
! TGTTGAAAGGCTATGTTTTG+AGG + chr3_2:79204691-79204710 None:intergenic 35.0%
ATAGCCTTTCAACAATTCTC+AGG - chr3_2:79204697-79204716 Msa0428370:three_prime_UTR 35.0%
!!! AGAACAAGAGGTTTTGAAGA+TGG + chr3_2:79204790-79204809 None:intergenic 35.0%
CTTCAAAACCTCTTGTTCTT+TGG - chr3_2:79204791-79204810 Msa0428370:three_prime_UTR 35.0%
AATGGACCATTTAGACCAAA+TGG - chr3_2:79204865-79204884 Msa0428370:three_prime_UTR 35.0%
TCAATGAATGCATGTCATTG+TGG + chr3_2:79204957-79204976 None:intergenic 35.0%
! AGAGGCAAACATGCTTTATT+TGG - chr3_2:79205013-79205032 Msa0428370:CDS 35.0%
TAAGAAAATCCAACTCCAAC+TGG + chr3_2:79205044-79205063 None:intergenic 35.0%
!! CAGAGATTTGTTTCTAACTG+GGG - chr3_2:79205502-79205521 Msa0428370:intron 35.0%
ATCATAAGCTTTGCAAGTTG+AGG + chr3_2:79205632-79205651 None:intergenic 35.0%
CCAAAATTGAATTGCAGTTG+GGG - chr3_2:79205764-79205783 Msa0428370:intron 35.0%
!! TCAGTTGCATATTCTAGAAC+TGG + chr3_2:79205793-79205812 None:intergenic 35.0%
! ATTCAAGGGCTGAATTCTTT+TGG - chr3_2:79205818-79205837 Msa0428370:CDS 35.0%
AGTTTCACCTCTTTGTTCAA+AGG - chr3_2:79205930-79205949 Msa0428370:intron 35.0%
ACCTCTTTGTTCAAAGGTTA+TGG - chr3_2:79205936-79205955 Msa0428370:intron 35.0%
CCTCTTTGTTCAAAGGTTAT+GGG - chr3_2:79205937-79205956 Msa0428370:intron 35.0%
TTGTTCAAAGGTTATGGGAT+TGG - chr3_2:79205942-79205961 Msa0428370:intron 35.0%
! CATTTCATTTGCTTGCTACA+AGG + chr3_2:79206283-79206302 None:intergenic 35.0%
AAGGTTATAAAACAGGTCCA+CGG + chr3_2:79206556-79206575 None:intergenic 35.0%
AAGGACCAAGGTTATAAAAC+AGG + chr3_2:79206563-79206582 None:intergenic 35.0%
GACCAATGAAGCTAAATCAT+TGG + chr3_2:79206621-79206640 None:intergenic 35.0%
AAAGATCATCAGTGATCACA+TGG + chr3_2:79206699-79206718 None:intergenic 35.0%
! CTGATGATCTTTGTCTGTTT+TGG - chr3_2:79206707-79206726 Msa0428370:intron 35.0%
GTTGGATCATTGATAAAAGC+TGG - chr3_2:79206785-79206804 Msa0428370:intron 35.0%
GAGTTAAGGTCCTAATTTAC+AGG - chr3_2:79206807-79206826 Msa0428370:intron 35.0%
TAAGGTCCTAATTTACAGGT+AGG - chr3_2:79206811-79206830 Msa0428370:intron 35.0%
ACACTTCCTACCTGTAAATT+AGG + chr3_2:79206820-79206839 None:intergenic 35.0%
GTGCATTATTATTGCTACAG+TGG - chr3_2:79206930-79206949 Msa0428370:CDS 35.0%
AAAAGGATCTTTCCACTTTG+GGG + chr3_2:79207197-79207216 None:intergenic 35.0%
GAAAAGGATCTTTCCACTTT+GGG + chr3_2:79207198-79207217 None:intergenic 35.0%
AAGACTAAAGCCAATGGAAA+AGG + chr3_2:79207214-79207233 None:intergenic 35.0%
TTGACAAAGACTAAAGCCAA+TGG + chr3_2:79207220-79207239 None:intergenic 35.0%
!! TGGCTTTAGTCTTTGTCAAT+TGG - chr3_2:79207221-79207240 Msa0428370:CDS 35.0%
! GGCTTTAGTCTTTGTCAATT+GGG - chr3_2:79207222-79207241 Msa0428370:CDS 35.0%
CAGACAATACTTCAGAAAGT+CGG + chr3_2:79207371-79207390 None:intergenic 35.0%
TAACTAAGGATAAAACTGCG+AGG + chr3_2:79207413-79207432 None:intergenic 35.0%
!! CCAAAGAGTGCTTACATATA+GGG + chr3_2:79207475-79207494 None:intergenic 35.0%
!! TCCAAAGAGTGCTTACATAT+AGG + chr3_2:79207476-79207495 None:intergenic 35.0%
!! ATGTGGGACTTTTTAGTGTA+CGG - chr3_2:79207574-79207593 Msa0428370:intron 35.0%
CAATGGTTAAGGTCGTAAAA+TGG + chr3_2:79207688-79207707 None:intergenic 35.0%
TAAAAGTGGTGCAATGGTTA+AGG + chr3_2:79207699-79207718 None:intergenic 35.0%
CGTACAATACCTCATAAAAG+TGG + chr3_2:79207713-79207732 None:intergenic 35.0%
!! TTATGAGGTATTGTACGCTT+AGG - chr3_2:79207716-79207735 Msa0428370:intron 35.0%
! CGTGCTATTCAAATCATTCT+TGG - chr3_2:79207894-79207913 Msa0428370:intron 35.0%
TCAAATCATTCTTGGAAGGA+AGG - chr3_2:79207902-79207921 Msa0428370:intron 35.0%
TGTCAGAAAACTTCAGGTAA+AGG + chr3_2:79207928-79207947 None:intergenic 35.0%
GTAAACACACAAAAGGGAAA+GGG + chr3_2:79207953-79207972 None:intergenic 35.0%
AGTAAACACACAAAAGGGAA+AGG + chr3_2:79207954-79207973 None:intergenic 35.0%
ATAGAGAGAAAGAGTGATGG+GGG + chr3_2:79204539-79204558 None:intergenic 40.0%
CTATACTCTTCTCTCTCTCA+TGG - chr3_2:79204555-79204574 Msa0428370:three_prime_UTR 40.0%
TCTCATGGCAATGACAACAA+TGG - chr3_2:79204570-79204589 Msa0428370:three_prime_UTR 40.0%
GACAAAATTGTTACCCTTCC+TGG - chr3_2:79204661-79204680 Msa0428370:three_prime_UTR 40.0%
GTAGGTGCATTCTCAGAAAA+TGG - chr3_2:79204847-79204866 Msa0428370:three_prime_UTR 40.0%
! CTTTATTTGGAGACACCAGT+TGG - chr3_2:79205026-79205045 Msa0428370:CDS 40.0%
TACAACAACAGTGAATGACG+AGG - chr3_2:79205085-79205104 Msa0428370:intron 40.0%
AAGGGACAATCTTGTATTCC+TGG - chr3_2:79205445-79205464 Msa0428370:intron 40.0%
ATCTTGTATTCCTGGAACGT+TGG - chr3_2:79205453-79205472 Msa0428370:intron 40.0%
! CCCCAACTGCAATTCAATTT+TGG + chr3_2:79205767-79205786 None:intergenic 40.0%
! GCTGAATTCTTTTGGTCACA+TGG - chr3_2:79205826-79205845 Msa0428370:CDS 40.0%
CCCATAACCTTTGAACAAAG+AGG + chr3_2:79205940-79205959 None:intergenic 40.0%
AGGTTGAGGAGAAATAACCT+TGG + chr3_2:79206046-79206065 None:intergenic 40.0%
! GGAAAAGCATGAGAAAGGAA+AGG + chr3_2:79206092-79206111 None:intergenic 40.0%
! GTGATGGAAAAGCATGAGAA+AGG + chr3_2:79206097-79206116 None:intergenic 40.0%
GCTTCAAAGACTAGAAGTGA+TGG + chr3_2:79206113-79206132 None:intergenic 40.0%
AGATGTATGTGTGGATGACA+AGG - chr3_2:79206305-79206324 Msa0428370:intron 40.0%
GCACTTCATGCAAAACTTGT+TGG - chr3_2:79206363-79206382 Msa0428370:intron 40.0%
CAGCAAGTAAGTCATTCTCA+AGG - chr3_2:79206407-79206426 Msa0428370:intron 40.0%
! GTGGACCTGTTTTATAACCT+TGG - chr3_2:79206555-79206574 Msa0428370:intron 40.0%
! GGCCAATGATTTAGCTTCAT+TGG - chr3_2:79206616-79206635 Msa0428370:intron 40.0%
TCATCAGTGATCACATGGAT+TGG + chr3_2:79206694-79206713 None:intergenic 40.0%
AGTTAAGCACATCATAGTCC+AGG + chr3_2:79206742-79206761 None:intergenic 40.0%
GGACTATGATGTGCTTAACT+TGG - chr3_2:79206742-79206761 Msa0428370:intron 40.0%
CAACAGTTCCTTACAGAGTA+TGG - chr3_2:79207030-79207049 Msa0428370:CDS 40.0%
CCTTCAAACCATACTCTGTA+AGG + chr3_2:79207041-79207060 None:intergenic 40.0%
CCTTACAGAGTATGGTTTGA+AGG - chr3_2:79207038-79207057 Msa0428370:CDS 40.0%
AAAGGATCTTTCCACTTTGG+GGG + chr3_2:79207196-79207215 None:intergenic 40.0%
GGAAAAGGATCTTTCCACTT+TGG + chr3_2:79207199-79207218 None:intergenic 40.0%
! GTGGAAAGATCCTTTTCCAT+TGG - chr3_2:79207201-79207220 Msa0428370:CDS 40.0%
AAGTCGGTACGAAAGATTTG+AGG + chr3_2:79207355-79207374 None:intergenic 40.0%
! AGAGTGCTTACATATAGGGA+CGG + chr3_2:79207471-79207490 None:intergenic 40.0%
CCCTATATGTAAGCACTCTT+TGG - chr3_2:79207472-79207491 Msa0428370:intron 40.0%
! GTTGAGATTAAGGTGCTACA+GGG - chr3_2:79207623-79207642 Msa0428370:intron 40.0%
! TTGAGATTAAGGTGCTACAG+GGG - chr3_2:79207624-79207643 Msa0428370:intron 40.0%
!! ACCATTGCACCACTTTTATG+AGG - chr3_2:79207701-79207720 Msa0428370:intron 40.0%
ACCTCATAAAAGTGGTGCAA+TGG + chr3_2:79207705-79207724 None:intergenic 40.0%
AATAGCACGAGTGATCTTTC+AGG + chr3_2:79207883-79207902 None:intergenic 40.0%
GTTGTTGAAGAGAATGCAAG+TGG - chr3_2:79208202-79208221 Msa0428370:CDS 40.0%
!! CTAAGTTTTTGGGCCAACAA+TGG - chr3_2:79208234-79208253 Msa0428370:CDS 40.0%
AACTCAAACTCGTTGCAGAT+CGG - chr3_2:79208311-79208330 Msa0428370:five_prime_UTR 40.0%
! TAGAGAGAAAGAGTGATGGG+GGG + chr3_2:79204538-79204557 None:intergenic 45.0%
!!! GTTTTGAGGTTGTCCAGGAA+GGG + chr3_2:79204677-79204696 None:intergenic 45.0%
!!! TGTTTTGAGGTTGTCCAGGA+AGG + chr3_2:79204678-79204697 None:intergenic 45.0%
!!! GCTATGTTTTGAGGTTGTCC+AGG + chr3_2:79204682-79204701 None:intergenic 45.0%
CCATTGAGCCAAAGAACAAG+AGG + chr3_2:79204802-79204821 None:intergenic 45.0%
! CCTCTTGTTCTTTGGCTCAA+TGG - chr3_2:79204799-79204818 Msa0428370:three_prime_UTR 45.0%
! CTTGTTCTTTGGCTCAATGG+AGG - chr3_2:79204802-79204821 Msa0428370:three_prime_UTR 45.0%
ACTCCAAGAGAAGAACAACC+AGG + chr3_2:79204829-79204848 None:intergenic 45.0%
GGTTGTTCTTCTCTTGGAGT+AGG - chr3_2:79204829-79204848 Msa0428370:three_prime_UTR 45.0%
ACAGTGAATGACGAGGAAAC+AGG - chr3_2:79205092-79205111 Msa0428370:intron 45.0%
! ACTTGTTGAACCAACGTTCC+AGG + chr3_2:79205466-79205485 None:intergenic 45.0%
CTAACTGGGGAAAGTTATGC+AGG - chr3_2:79205515-79205534 Msa0428370:intron 45.0%
AAGACACTCACTTGAGGTTG+AGG + chr3_2:79206060-79206079 None:intergenic 45.0%
CAAGAGAAGACACTCACTTG+AGG + chr3_2:79206066-79206085 None:intergenic 45.0%
AAACAGGAGAGATGTGCAAG+AGG - chr3_2:79206341-79206360 Msa0428370:intron 45.0%
!! AACTTGTTGGAGTTCGCAAG+TGG - chr3_2:79206376-79206395 Msa0428370:intron 45.0%
! ACTTGTTGGAGTTCGCAAGT+GGG - chr3_2:79206377-79206396 Msa0428370:intron 45.0%
TGTCTTCGCAACCTCAAATG+AGG + chr3_2:79206500-79206519 None:intergenic 45.0%
TAGCTTAGTGAGAAGGACCA+AGG + chr3_2:79206575-79206594 None:intergenic 45.0%
!!! CTGTTTTGGTAACAGTGTCC+TGG - chr3_2:79206721-79206740 Msa0428370:intron 45.0%
! GATCCAACAACAGGAAGTGT+TGG + chr3_2:79206773-79206792 None:intergenic 45.0%
CTACAGTGGAGATCAAGACT+CGG - chr3_2:79206944-79206963 Msa0428370:CDS 45.0%
AGTATGGTTTGAAGGCCAAC+AGG - chr3_2:79207046-79207065 Msa0428370:CDS 45.0%
TGCTTACATATAGGGACGGA+GGG + chr3_2:79207467-79207486 None:intergenic 45.0%
! AGGGTGCTTAGATATAGGGA+CGG - chr3_2:79207505-79207524 Msa0428370:intron 45.0%
TGCTTAGATATAGGGACGGA+GGG - chr3_2:79207509-79207528 Msa0428370:intron 45.0%
CCTCGGTTCTTACGTAATGT+GGG - chr3_2:79207558-79207577 Msa0428370:intron 45.0%
TGAGGCTGAGGTTGAGATTA+AGG - chr3_2:79207613-79207632 Msa0428370:intron 45.0%
! GGTTGAGATTAAGGTGCTAC+AGG - chr3_2:79207622-79207641 Msa0428370:intron 45.0%
AAGGTCGTAAAATGGCCTCT+AGG + chr3_2:79207680-79207699 None:intergenic 45.0%
!! ATGAAACTTAGGTTGGTGGG+TGG - chr3_2:79207785-79207804 Msa0428370:CDS 45.0%
GATCTTTCAGGCTGTGAGAA+AGG + chr3_2:79207871-79207890 None:intergenic 45.0%
AGGGTGTGTCAGAAAACTTC+AGG + chr3_2:79207934-79207953 None:intergenic 45.0%
!! AAAAAAGAAATATAAAAAAT+TGG + chr3_2:79208082-79208101 None:intergenic 5.0%
!!! AATTTTTTATATTTCTTTTT+TGG - chr3_2:79208081-79208100 Msa0428370:CDS 5.0%
GGACCTGGTTGTTCTTCTCT+TGG - chr3_2:79204823-79204842 Msa0428370:three_prime_UTR 50.0%
TTGGAGACACCAGTTGGAGT+TGG - chr3_2:79205032-79205051 Msa0428370:CDS 50.0%
GGTTTATGCGGCCTCATTTG+AGG - chr3_2:79206486-79206505 Msa0428370:CDS 50.0%
! CGATTTGGGCTGTGACATCA+AGG + chr3_2:79206529-79206548 None:intergenic 50.0%
AGGTCCACGGACAACGATTT+GGG + chr3_2:79206543-79206562 None:intergenic 50.0%
GTGCCAACACTTCCTGTTGT+TGG - chr3_2:79206767-79206786 Msa0428370:intron 50.0%
AAGCTTCTGCTTCCAGTCAG+TGG + chr3_2:79206975-79206994 None:intergenic 50.0%
AGTGACCAGAAAGCCTTCAG+TGG - chr3_2:79207142-79207161 Msa0428370:intron 50.0%
TGACTCCACTGAAGGCTTTC+TGG + chr3_2:79207150-79207169 None:intergenic 50.0%
AAGCCTTCAGTGGAGTCACT+AGG - chr3_2:79207152-79207171 Msa0428370:intron 50.0%
AGCCTTCAGTGGAGTCACTA+GGG - chr3_2:79207153-79207172 Msa0428370:intron 50.0%
ATCCCTAGTGACTCCACTGA+AGG + chr3_2:79207158-79207177 None:intergenic 50.0%
GACTACTCTTTCCCCCAAAG+TGG - chr3_2:79207182-79207201 Msa0428370:CDS 50.0%
GTGCTTACATATAGGGACGG+AGG + chr3_2:79207468-79207487 None:intergenic 50.0%
GTGCTTAGATATAGGGACGG+AGG - chr3_2:79207508-79207527 Msa0428370:intron 50.0%
GCCTCGGTTCTTACGTAATG+TGG - chr3_2:79207557-79207576 Msa0428370:intron 50.0%
CCCACATTACGTAAGAACCG+AGG + chr3_2:79207561-79207580 None:intergenic 50.0%
! GTGTACGGAACACTAGTCTC+CGG - chr3_2:79207589-79207608 Msa0428370:intron 50.0%
ATCTCAACCTCAGCCTCAAC+CGG + chr3_2:79207611-79207630 None:intergenic 50.0%
! GGTGGGTGGACTCAAGTTTA+TGG - chr3_2:79207799-79207818 Msa0428370:CDS 50.0%
CTCTCATTTGCCACAGTGAG+AGG - chr3_2:79207829-79207848 Msa0428370:CDS 50.0%
! AGAGAAAGAGTGATGGGGGG+TGG + chr3_2:79204535-79204554 None:intergenic 55.0%
! CTTTGGCTCAATGGAGGACC+TGG - chr3_2:79204808-79204827 Msa0428370:three_prime_UTR 55.0%
CTTGGACTGTGACAGCACAG+AGG + chr3_2:79206028-79206047 None:intergenic 55.0%
CTCTGTGCTGTCACAGTCCA+AGG - chr3_2:79206026-79206045 Msa0428370:intron 55.0%
ACAGCCCAAATCGTTGTCCG+TGG - chr3_2:79206536-79206555 Msa0428370:intron 55.0%
CAGGTCCACGGACAACGATT+TGG + chr3_2:79206544-79206563 None:intergenic 55.0%
!! GACTCGGTGATTCCACTGAC+TGG - chr3_2:79206960-79206979 Msa0428370:CDS 55.0%
! GGAACACTAGTCTCCGGTTG+AGG - chr3_2:79207595-79207614 Msa0428370:intron 55.0%
AGAGCCTAAGCCACACACGA+GGG + chr3_2:79207657-79207676 None:intergenic 55.0%
TGTGGCTTAGGCTCTCCTAG+AGG - chr3_2:79207662-79207681 Msa0428370:intron 55.0%
ATGTGCAGCACCTCTCACTG+TGG + chr3_2:79207842-79207861 None:intergenic 55.0%
CTAGTCTCCGGTTGAGGCTG+AGG - chr3_2:79207601-79207620 Msa0428370:intron 60.0%
! GGGTTTTCAGCCCTCGTGTG+TGG - chr3_2:79207644-79207663 Msa0428370:intron 60.0%
TCAGCCCTCGTGTGTGGCTT+AGG - chr3_2:79207650-79207669 Msa0428370:intron 60.0%
GAGAGCCTAAGCCACACACG+AGG + chr3_2:79207658-79207677 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 79204499 79208370 79204499 ID=Msa0428370;Name=Msa0428370
chr3_2 mRNA 79204499 79208370 79204499 ID=Msa0428370-mRNA-1;Parent=Msa0428370;Name=Msa0428370-mRNA-1;_AED=0.21;_eAED=0.21;_QI=75|0.75|0.77|1|1|1|9|425|439
chr3_2 exon 79204499 79205073 79204499 ID=Msa0428370-mRNA-1:exon:21363;Parent=Msa0428370-mRNA-1
chr3_2 exon 79205802 79205919 79205802 ID=Msa0428370-mRNA-1:exon:21362;Parent=Msa0428370-mRNA-1
chr3_2 exon 79206041 79206133 79206041 ID=Msa0428370-mRNA-1:exon:21361;Parent=Msa0428370-mRNA-1
chr3_2 exon 79206475 79206542 79206475 ID=Msa0428370-mRNA-1:exon:21360;Parent=Msa0428370-mRNA-1
chr3_2 exon 79206822 79207088 79206822 ID=Msa0428370-mRNA-1:exon:21359;Parent=Msa0428370-mRNA-1
chr3_2 exon 79207172 79207251 79207172 ID=Msa0428370-mRNA-1:exon:21358;Parent=Msa0428370-mRNA-1
chr3_2 exon 79207333 79207425 79207333 ID=Msa0428370-mRNA-1:exon:21357;Parent=Msa0428370-mRNA-1
chr3_2 exon 79207756 79207854 79207756 ID=Msa0428370-mRNA-1:exon:21356;Parent=Msa0428370-mRNA-1
chr3_2 exon 79207944 79208370 79207944 ID=Msa0428370-mRNA-1:exon:21355;Parent=Msa0428370-mRNA-1
chr3_2 five_prime_UTR 79208296 79208370 79208296 ID=Msa0428370-mRNA-1:five_prime_utr;Parent=Msa0428370-mRNA-1
chr3_2 CDS 79207944 79208295 79207944 ID=Msa0428370-mRNA-1:cds;Parent=Msa0428370-mRNA-1
chr3_2 CDS 79207756 79207854 79207756 ID=Msa0428370-mRNA-1:cds;Parent=Msa0428370-mRNA-1
chr3_2 CDS 79207333 79207425 79207333 ID=Msa0428370-mRNA-1:cds;Parent=Msa0428370-mRNA-1
chr3_2 CDS 79207172 79207251 79207172 ID=Msa0428370-mRNA-1:cds;Parent=Msa0428370-mRNA-1
chr3_2 CDS 79206822 79207088 79206822 ID=Msa0428370-mRNA-1:cds;Parent=Msa0428370-mRNA-1
chr3_2 CDS 79206475 79206542 79206475 ID=Msa0428370-mRNA-1:cds;Parent=Msa0428370-mRNA-1
chr3_2 CDS 79206041 79206133 79206041 ID=Msa0428370-mRNA-1:cds;Parent=Msa0428370-mRNA-1
chr3_2 CDS 79205802 79205919 79205802 ID=Msa0428370-mRNA-1:cds;Parent=Msa0428370-mRNA-1
chr3_2 CDS 79204924 79205073 79204924 ID=Msa0428370-mRNA-1:cds;Parent=Msa0428370-mRNA-1
chr3_2 three_prime_UTR 79204499 79204923 79204499 ID=Msa0428370-mRNA-1:three_prime_utr;Parent=Msa0428370-mRNA-1
Gene Sequence

>Msa0428370

ATGGCAATGACAACAATGGCTATGTTATTTCTTCATTTGAGTTTTTTTACCTTTAAAGTGTTTTGTTTCTCTTCTCATTCTCATGCAGACAAAATTGTTACCCTTCCTGGACAACCTCAAAACATAGCCTTTCAACAATTCTCAGGATATGTCACAGTTGATAACAAAAAACACAAGTCACTTTTTTACTATTTTGCTGAATCAGAAACTGATCCATCTTCAAAACCTCTTGTTCTTTGGCTCAATGGAGGACCTGGTTGTTCTTCTCTTGGAGTAGGTGCATTCTCAGAAAATGGACCATTTAGACCAAATGGTGAATTTCTTATTAAAAATGAACATAGTTGGAATAAAGAGGCAAACATGCTTTATTTGGAGACACCAGTTGGAGTTGGATTTTCTTATGTTAAAGGTAGTTCTGCTTATACAACAACAGTGAATGACGAGGAAACAGCAAGGGACAATCTTGTATTCCTGGAACGTTGGTTCAACAAGTTTCCTCAATATAGAAACAGAGATTTGTTTCTAACTGGGGAAAGTTATGCAGGTCATTATGTTCCTCAACTTGCAAAGCTTATGATTGAAATGAACAAAAGAAACAAGATATTCAATCTTAAAGGCATAGCTTTGGGGAATCCAGTTCTAGAATATGCAACTGATTTCAATTCAAGGGCTGAATTCTTTTGGTCACATGGACTAATATCAGATGCAACTTACAACATGTTCACTAGAGTGTGTAATTACTCTCGTTATGTAAGTGAGTACAATAGAGACTCAGTTTCACCTCTTTGTTCAAAGGTTATGGGATTGGTGAGTAAAGAAACTAGTAGATTTGTGGACAAATATGATGTCACACTTGATGTTTGCATTTCCTCTGTGCTGTCACAGTCCAAGGTTACAAACTACTTAAACAGGAGAGATGTGCAAGAGGCACTTCATGCAAAACTTGTTGGAGTTCGCAATGTCCTGGACTATGATGTGCTTAACTTGGAAGTGCCAACACTTCCTGTTGTTGGATCATTGATAAAAGCTGGAGTTAAGGTCCTAATTTACAGTGGAGATCAAGACTCGGTGATTCCACTGACTGGAAGCAGAAGCTTAGTTCAAAAATTGGCTAGACAATTAGGACTGAATACAACAGTTCCTTACAGAGTATGGTTTGAAGGCCAACAGGTTGGTGGGTGGACTCAAGTTTATGGCAATGTTCTCTCATTTGCCACAGTGAGAGGTGCTGCACATGAAGCTCCTTTCTCACAGCCTGAAAGATCACTCGTGCTATTCAAATCATTCTTGGAAGGAAGGCCTTTACCTGAAGTTTTCTGA

Protein sequence

>Msa0428370

MAMTTMAMLFLHLSFFTFKVFCFSSHSHADKIVTLPGQPQNIAFQQFSGYVTVDNKKHKSLFYYFAESETDPSSKPLVLWLNGGPGCSSLGVGAFSENGPFRPNGEFLIKNEHSWNKEANMLYLETPVGVGFSYVKGSSAYTTTVNDEETARDNLVFLERWFNKFPQYRNRDLFLTGESYAGHYVPQLAKLMIEMNKRNKIFNLKGIALGNPVLEYATDFNSRAEFFWSHGLISDATYNMFTRVCNYSRYVSEYNRDSVSPLCSKVMGLVSKETSRFVDKYDVTLDVCISSVLSQSKVTNYLNRRDVQEALHAKLVGVRNVLDYDVLNLEVPTLPVVGSLIKAGVKVLIYSGDQDSVIPLTGSRSLVQKLARQLGLNTTVPYRVWFEGQQVGGWTQVYGNVLSFATVRGAAHEAPFSQPERSLVLFKSFLEGRPLPEVF*