AlfalfaGEDB | Msa0428370

M. sativa cultivar zhongmu-4 / Msa0428370

KEGG: K16297
GO: GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009505 GO:0009506 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030054 GO:0030163 GO:0030312 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0051603 GO:0055044 GO:0070008 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575
PFAM: PF00450.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428370	XP_013461655.2	92.043	465	10	3	1	439	1	464	0.0	867

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428370	sp\|Q93Y09\|SCP45_ARATH	74.312	436	86	4	28	439	28	461	0.0	673

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428370	A0A396J055	92.043	465	10	3	1	439	1	464	0.0	867

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa0428370	0.849511	3.086386e-60	-8.615850e-47
Msa0001940	Msa0428370	0.845019	5.272024e-59	-8.615850e-47
Msa0001960	Msa0428370	0.822088	2.856135e-53	-8.615850e-47
Msa0002580	Msa0428370	0.871074	9.012929e-67	-8.615850e-47
Msa0005890	Msa0428370	0.867575	1.237281e-65	-8.615850e-47
Msa0017670	Msa0428370	0.812889	3.378430e-51	-8.615850e-47
Msa0017930	Msa0428370	0.835782	1.373481e-56	-8.615850e-47
Msa0017950	Msa0428370	0.842364	2.705108e-58	-8.615850e-47
Msa0024000	Msa0428370	0.839557	1.475750e-57	-8.615850e-47
Msa0024550	Msa0428370	0.815360	9.621741e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428370	MtrunA17_Chr3g0131731	92.043	465	10	3	1	439	1	464	0.0	867
Msa0428370	MtrunA17_Chr8g0385871	75.271	461	83	6	5	439	10	465	0.0	698
Msa0428370	MtrunA17_Chr7g0221551	68.035	463	113	5	1	439	9	460	0.0	645
Msa0428370	MtrunA17_Chr3g0094811	58.636	440	153	5	24	439	23	457	0.0	551
Msa0428370	MtrunA17_Chr2g0304931	57.407	432	155	6	29	436	36	462	2.22e-177	504
Msa0428370	MtrunA17_Chr3g0126051	44.091	440	207	7	30	437	32	464	2.45e-132	389
Msa0428370	MtrunA17_Chr1g0204191	47.018	436	173	10	27	436	87	490	1.03e-131	389
Msa0428370	MtrunA17_Chr3g0126031	44.064	438	206	8	30	436	27	456	8.37e-129	380
Msa0428370	MtrunA17_Chr5g0431301	44.545	440	205	9	30	436	28	461	2.32e-128	379
Msa0428370	MtrunA17_Chr3g0118851	45.070	426	198	10	29	432	75	486	7.91e-115	345

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428370	AT1G28110.1	74.312	436	86	4	28	439	28	461	0.0	673
Msa0428370	AT1G28110.2	74.312	436	86	4	28	439	28	461	0.0	673
Msa0428370	AT2G33530.1	71.071	439	99	4	27	439	29	465	0.0	653
Msa0428370	AT1G43780.1	47.727	440	194	8	30	437	36	471	4.01e-137	402
Msa0428370	AT2G12480.4	45.067	446	219	9	3	436	2	433	1.91e-131	386
Msa0428370	AT5G42240.1	46.591	440	196	9	30	436	31	464	1.43e-130	385
Msa0428370	AT2G12480.1	44.843	446	218	9	3	436	2	431	4.05e-130	383
Msa0428370	AT2G12480.3	43.777	466	220	10	3	436	2	457	8.07e-130	383
Msa0428370	AT5G42230.1	43.656	465	226	9	3	436	1	460	2.72e-129	382
Msa0428370	AT5G42230.2	43.656	465	226	9	3	436	1	460	2.72e-129	382

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Find 97 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGGAGAGATGTGCAAG+AGG	0.664395	3_2:-79206506	Msa0428370:CDS
AAATCTCTGTTTCTATATTG+AGG	0.417674	3_2:+79207359	None:intergenic
AACAAGATATTCAATCTTAA+AGG	0.249651	3_2:-79207179	Msa0428370:CDS
AACAGAGATTTGTTTCTAAC+TGG	0.261748	3_2:-79207347	Msa0428370:CDS
AACTCAAACTCGTTGCAGAT+CGG	0.593466	3_2:-79204536	Msa0428370:three_prime_UTR
AAGCTTCTGCTTCCAGTCAG+TGG	0.568377	3_2:+79205875	None:intergenic
AAGGGACAATCTTGTATTCC+TGG	0.417025	3_2:-79207402	Msa0428370:CDS
AATAGCACGAGTGATCTTTC+AGG	0.286784	3_2:+79204967	None:intergenic
AATGAACATAGTTGGAATAA+AGG	0.338350	3_2:-79207943	Msa0428370:intron
AATGGACCATTTAGACCAAA+TGG	0.474826	3_2:-79207982	Msa0428370:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATATCCTGAGAATTGTTGAA+AGG	+	chr3_2:79204704-79204723	None:intergenic	30.0%
AATTCACCATTTGGTCTAAA+TGG	+	chr3_2:79204874-79204893	None:intergenic	30.0%
TCAACAGCTAGAAAATTGTA+AGG	+	chr3_2:79205742-79205761	None:intergenic	30.0%
TACCAAAATTGAATTGCAGT+TGG	-	chr3_2:79205762-79205781	Msa0428370:intron	30.0%
ACCAAAATTGAATTGCAGTT+GGG	-	chr3_2:79205763-79205782	Msa0428370:intron	30.0%
TGAAATGATAGATGTATGTG+TGG	-	chr3_2:79206296-79206315	Msa0428370:intron	30.0%
AGGTTACAAACTACTTAAAC+AGG	-	chr3_2:79206325-79206344	Msa0428370:intron	30.0%
TTTATCAATGATCCAACAAC+AGG	+	chr3_2:79206782-79206801	None:intergenic	30.0%
ATTGATAAAAGCTGGAGTTA+AGG	-	chr3_2:79206793-79206812	Msa0428370:intron	30.0%
CAGAAGCTTAGTTCAAAAAT+TGG	-	chr3_2:79206986-79207005	Msa0428370:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	79204499	79208370	79204499	ID=Msa0428370;Name=Msa0428370
chr3_2	mRNA	79204499	79208370	79204499	ID=Msa0428370-mRNA-1;Parent=Msa0428370;Name=Msa0428370-mRNA-1;_AED=0.21;_eAED=0.21;_QI=75\|0.75\|0.77\|1\|1\|1\|9\|425\|439
chr3_2	exon	79204499	79205073	79204499	ID=Msa0428370-mRNA-1:exon:21363;Parent=Msa0428370-mRNA-1
chr3_2	exon	79205802	79205919	79205802	ID=Msa0428370-mRNA-1:exon:21362;Parent=Msa0428370-mRNA-1
chr3_2	exon	79206041	79206133	79206041	ID=Msa0428370-mRNA-1:exon:21361;Parent=Msa0428370-mRNA-1
chr3_2	exon	79206475	79206542	79206475	ID=Msa0428370-mRNA-1:exon:21360;Parent=Msa0428370-mRNA-1
chr3_2	exon	79206822	79207088	79206822	ID=Msa0428370-mRNA-1:exon:21359;Parent=Msa0428370-mRNA-1
chr3_2	exon	79207172	79207251	79207172	ID=Msa0428370-mRNA-1:exon:21358;Parent=Msa0428370-mRNA-1
chr3_2	exon	79207333	79207425	79207333	ID=Msa0428370-mRNA-1:exon:21357;Parent=Msa0428370-mRNA-1
chr3_2	exon	79207756	79207854	79207756	ID=Msa0428370-mRNA-1:exon:21356;Parent=Msa0428370-mRNA-1
chr3_2	exon	79207944	79208370	79207944	ID=Msa0428370-mRNA-1:exon:21355;Parent=Msa0428370-mRNA-1
chr3_2	five_prime_UTR	79208296	79208370	79208296	ID=Msa0428370-mRNA-1:five_prime_utr;Parent=Msa0428370-mRNA-1
chr3_2	CDS	79207944	79208295	79207944	ID=Msa0428370-mRNA-1:cds;Parent=Msa0428370-mRNA-1
chr3_2	CDS	79207756	79207854	79207756	ID=Msa0428370-mRNA-1:cds;Parent=Msa0428370-mRNA-1
chr3_2	CDS	79207333	79207425	79207333	ID=Msa0428370-mRNA-1:cds;Parent=Msa0428370-mRNA-1
chr3_2	CDS	79207172	79207251	79207172	ID=Msa0428370-mRNA-1:cds;Parent=Msa0428370-mRNA-1
chr3_2	CDS	79206822	79207088	79206822	ID=Msa0428370-mRNA-1:cds;Parent=Msa0428370-mRNA-1
chr3_2	CDS	79206475	79206542	79206475	ID=Msa0428370-mRNA-1:cds;Parent=Msa0428370-mRNA-1
chr3_2	CDS	79206041	79206133	79206041	ID=Msa0428370-mRNA-1:cds;Parent=Msa0428370-mRNA-1
chr3_2	CDS	79205802	79205919	79205802	ID=Msa0428370-mRNA-1:cds;Parent=Msa0428370-mRNA-1
chr3_2	CDS	79204924	79205073	79204924	ID=Msa0428370-mRNA-1:cds;Parent=Msa0428370-mRNA-1
chr3_2	three_prime_UTR	79204499	79204923	79204499	ID=Msa0428370-mRNA-1:three_prime_utr;Parent=Msa0428370-mRNA-1

Gene Sequence

>Msa0428370

ATGGCAATGACAACAATGGCTATGTTATTTCTTCATTTGAGTTTTTTTACCTTTAAAGTGTTTTGTTTCTCTTCTCATTCTCATGCAGACAAAATTGTTACCCTTCCTGGACAACCTCAAAACATAGCCTTTCAACAATTCTCAGGATATGTCACAGTTGATAACAAAAAACACAAGTCACTTTTTTACTATTTTGCTGAATCAGAAACTGATCCATCTTCAAAACCTCTTGTTCTTTGGCTCAATGGAGGACCTGGTTGTTCTTCTCTTGGAGTAGGTGCATTCTCAGAAAATGGACCATTTAGACCAAATGGTGAATTTCTTATTAAAAATGAACATAGTTGGAATAAAGAGGCAAACATGCTTTATTTGGAGACACCAGTTGGAGTTGGATTTTCTTATGTTAAAGGTAGTTCTGCTTATACAACAACAGTGAATGACGAGGAAACAGCAAGGGACAATCTTGTATTCCTGGAACGTTGGTTCAACAAGTTTCCTCAATATAGAAACAGAGATTTGTTTCTAACTGGGGAAAGTTATGCAGGTCATTATGTTCCTCAACTTGCAAAGCTTATGATTGAAATGAACAAAAGAAACAAGATATTCAATCTTAAAGGCATAGCTTTGGGGAATCCAGTTCTAGAATATGCAACTGATTTCAATTCAAGGGCTGAATTCTTTTGGTCACATGGACTAATATCAGATGCAACTTACAACATGTTCACTAGAGTGTGTAATTACTCTCGTTATGTAAGTGAGTACAATAGAGACTCAGTTTCACCTCTTTGTTCAAAGGTTATGGGATTGGTGAGTAAAGAAACTAGTAGATTTGTGGACAAATATGATGTCACACTTGATGTTTGCATTTCCTCTGTGCTGTCACAGTCCAAGGTTACAAACTACTTAAACAGGAGAGATGTGCAAGAGGCACTTCATGCAAAACTTGTTGGAGTTCGCAATGTCCTGGACTATGATGTGCTTAACTTGGAAGTGCCAACACTTCCTGTTGTTGGATCATTGATAAAAGCTGGAGTTAAGGTCCTAATTTACAGTGGAGATCAAGACTCGGTGATTCCACTGACTGGAAGCAGAAGCTTAGTTCAAAAATTGGCTAGACAATTAGGACTGAATACAACAGTTCCTTACAGAGTATGGTTTGAAGGCCAACAGGTTGGTGGGTGGACTCAAGTTTATGGCAATGTTCTCTCATTTGCCACAGTGAGAGGTGCTGCACATGAAGCTCCTTTCTCACAGCCTGAAAGATCACTCGTGCTATTCAAATCATTCTTGGAAGGAAGGCCTTTACCTGAAGTTTTCTGA

Protein sequence

>Msa0428370

MAMTTMAMLFLHLSFFTFKVFCFSSHSHADKIVTLPGQPQNIAFQQFSGYVTVDNKKHKSLFYYFAESETDPSSKPLVLWLNGGPGCSSLGVGAFSENGPFRPNGEFLIKNEHSWNKEANMLYLETPVGVGFSYVKGSSAYTTTVNDEETARDNLVFLERWFNKFPQYRNRDLFLTGESYAGHYVPQLAKLMIEMNKRNKIFNLKGIALGNPVLEYATDFNSRAEFFWSHGLISDATYNMFTRVCNYSRYVSEYNRDSVSPLCSKVMGLVSKETSRFVDKYDVTLDVCISSVLSQSKVTNYLNRRDVQEALHAKLVGVRNVLDYDVLNLEVPTLPVVGSLIKAGVKVLIYSGDQDSVIPLTGSRSLVQKLARQLGLNTTVPYRVWFEGQQVGGWTQVYGNVLSFATVRGAAHEAPFSQPERSLVLFKSFLEGRPLPEVF*