AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0045440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0045440 MtrunA17_Chr7g0232921 52.632 171 50 2 69 233 56 201 7.65e-58 182
Msa0045440 MtrunA17_Chr6g0473661 34.483 174 92 4 70 233 256 417 4.25e-24 100
Msa0045440 MtrunA17_Chr4g0054601 45.361 97 47 1 83 173 1 97 1.48e-22 89.0
Msa0045440 MtrunA17_Chr8g0365871 69.767 43 13 0 199 241 14 56 2.55e-17 75.1
Msa0045440 MtrunA17_Chr4g0023021 70.455 44 13 0 199 242 5 48 8.40e-17 73.9
Msa0045440 MtrunA17_Chr6g0473651 38.043 92 51 1 70 155 225 316 2.62e-14 71.6
Msa0045440 MtrunA17_Chr1g0206471 27.586 174 112 3 73 234 55 226 5.05e-14 69.7
Msa0045440 MtrunA17_Chr8g0366201 63.636 44 15 1 200 243 4 46 5.90e-13 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 132 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGAAAATTTAATCAAAA+TGG 0.126041 1_1:+77387366 Msa0045440:exon
ATATATGAAAAGAATTATTT+TGG 0.144047 1_1:-77382336 None:intergenic
GATTTAGCAGCAGCAATTTC+TGG 0.190081 1_1:-77386999 None:intergenic
CACAAAATTCTGCCATTTAC+TGG 0.195427 1_1:+77387083 Msa0045440:CDS
TTAAGTGTTTCAGATGATTC+AGG 0.268064 1_1:+77382895 Msa0045440:five_prime_UTR
AACGGAGCTTCCTTCTGTTC+GGG 0.297220 1_1:+77384118 Msa0045440:CDS
TGGGAATGAGCGAAATCATT+TGG 0.305908 1_1:+77382625 Msa0045440:five_prime_UTR
ACCTCAATCTCGTTATAGTT+TGG 0.308204 1_1:-77386796 None:intergenic
AATCATTACATATCTTAAAA+AGG 0.325921 1_1:-77387525 None:intergenic
ATTATGAACAGAAACTAAAT+TGG 0.332960 1_1:+77387223 Msa0045440:intron
TCAGCTCCTTCACCAGTAAA+TGG 0.335075 1_1:-77387095 None:intergenic
TATCACTAGTGTAGTTAGAT+AGG 0.342979 1_1:-77382485 None:intergenic
CCTTCTGTTCGGGGTCCTTC+CGG 0.349284 1_1:+77384128 Msa0045440:CDS
ATATAATATTAGTTACATAT+TGG 0.350104 1_1:+77382361 Msa0045440:five_prime_UTR
ACATGCTTTCCTCGTGTGTT+TGG 0.352558 1_1:+77386739 Msa0045440:CDS
AACATACTCAGAGGAGAAAT+AGG 0.358919 1_1:-77382970 None:intergenic
AATGTGAGCTTTGGGTTTGC+AGG 0.368268 1_1:+77383097 Msa0045440:five_prime_UTR
ATTACAGAGACTCATTTATT+CGG 0.374753 1_1:+77387034 Msa0045440:CDS
CAGCAATTTCTGGGGTGGAT+TGG 0.378343 1_1:-77386989 None:intergenic
TTGATGGGAATGTGAGCTTT+GGG 0.379698 1_1:+77383089 Msa0045440:five_prime_UTR
GATGGGATGATGGTGGACGG+TGG 0.381501 1_1:-77382755 None:intergenic
GTTGATGGGAATGTGAGCTT+TGG 0.388955 1_1:+77383088 Msa0045440:five_prime_UTR
TTTGAAAATTTAATCAAAAT+GGG 0.393395 1_1:+77387367 Msa0045440:exon
AAACGGAGCTTCCTTCTGTT+CGG 0.393580 1_1:+77384117 Msa0045440:CDS
GAGCTCCACCTCCTTCGATT+TGG 0.397613 1_1:+77384155 Msa0045440:CDS
GGGAATGAGCGAAATCATTT+GGG 0.399175 1_1:+77382626 Msa0045440:five_prime_UTR
AGAAGAGGATGAAGGGTTGA+GGG 0.407229 1_1:-77382724 None:intergenic
AGGACGAGTGATGGTGGGGA+TGG 0.407732 1_1:-77382773 None:intergenic
TAACATGCGTAGGGGTAGTT+TGG 0.407889 1_1:+77382592 Msa0045440:five_prime_UTR
AGGAGAAGGACGAGTGATGG+TGG 0.408727 1_1:-77382779 None:intergenic
GAGAAGAGGATGAAGGGTTG+AGG 0.412381 1_1:-77382725 None:intergenic
ATTTAGCAGCAGCAATTTCT+GGG 0.416789 1_1:-77386998 None:intergenic
AACGTGAAGGGAATGAGAAA+AGG 0.417396 1_1:-77382681 None:intergenic
CGACAAACCATCATCTTGCC+TGG 0.423337 1_1:+77384088 Msa0045440:CDS
GAACAGAAACTAAATTGGCT+TGG 0.426932 1_1:+77387228 Msa0045440:intron
AACAGAAACTAAATTGGCTT+GGG 0.431232 1_1:+77387229 Msa0045440:intron
AGGTGTACTTCGCAGATGGC+TGG 0.432414 1_1:+77386842 Msa0045440:CDS
TGAGGTTGCAGTTGAAAAGA+AGG 0.432434 1_1:+77386813 Msa0045440:CDS
ACGTGAAGGGAATGAGAAAA+GGG 0.434277 1_1:-77382680 None:intergenic
CGCATCACTTTGATAGCTTG+CGG 0.446790 1_1:-77383345 None:intergenic
GATGGTGGACGGTGGGATGG+TGG 0.447094 1_1:-77382747 None:intergenic
TGATGGTGGGGATGGGATGA+TGG 0.455471 1_1:-77382765 None:intergenic
GAGAGGAGAAGGACGAGTGA+TGG 0.457120 1_1:-77382782 None:intergenic
ATGTGCAATAACAATTTCTC+TGG 0.462147 1_1:+77383300 Msa0045440:CDS
ATTGCTGCTGCTAAATCAAA+AGG 0.464828 1_1:+77387005 Msa0045440:CDS
TTCTGGGGTGGATTGGATTG+AGG 0.468292 1_1:-77386982 None:intergenic
GATGATGGTGGACGGTGGGA+TGG 0.477054 1_1:-77382750 None:intergenic
TTGATTACCTTGGTTACACT+TGG 0.481524 1_1:+77387298 Msa0045440:CDS
TTCATCGTGGCAGAAATTCA+TGG 0.481797 1_1:-77387328 None:intergenic
AACAGTCAATTCAGTCCTCT+CGG 0.482477 1_1:-77387274 None:intergenic
TCTCTGGTCAAAACTTTGAT+CGG 0.482615 1_1:+77383316 Msa0045440:CDS
ATGAATTTCTGCCACGATGA+AGG 0.482831 1_1:+77387330 Msa0045440:CDS
GGACGAGTGATGGTGGGGAT+GGG 0.482919 1_1:-77382772 None:intergenic
ATGGGATGATGGTGGACGGT+GGG 0.484034 1_1:-77382754 None:intergenic
CTAATGTATTTGTAGAAGAA+GGG 0.485098 1_1:+77386706 Msa0045440:intron
AGAGACTCATTTATTCGGTA+TGG 0.485190 1_1:+77387039 Msa0045440:CDS
AAAGGATTAAGCCTAAATTC+TGG 0.487160 1_1:-77387421 None:intergenic
ACAGTCAATTCAGTCCTCTC+GGG 0.488479 1_1:-77387273 None:intergenic
GGAGAAGGACGAGTGATGGT+GGG 0.488606 1_1:-77382778 None:intergenic
AAGTTGAAGATTCCGTTGGC+TGG 0.499507 1_1:+77383369 Msa0045440:CDS
GGATCACGTATCATAACAAA+AGG 0.502100 1_1:-77386775 None:intergenic
TTTAAACCCAGGCAAGATGA+TGG 0.504053 1_1:-77384095 None:intergenic
GAAGAGGATGAAGGGTTGAG+GGG 0.506570 1_1:-77382723 None:intergenic
AAAGTATGGAAGAGAGGAGA+AGG 0.507006 1_1:-77382793 None:intergenic
GATGGTGGAGAAGAGGATGA+AGG 0.507056 1_1:-77382732 None:intergenic
CCGGAAGGACCCCGAACAGA+AGG 0.510653 1_1:-77384128 None:intergenic
CCTTCGATTTGGTATCCTGT+TGG 0.512922 1_1:+77384166 Msa0045440:CDS
TAAGTGTTTCAGATGATTCA+GGG 0.513198 1_1:+77382896 Msa0045440:five_prime_UTR
AAGGAGGTGGAGCTCGAAGC+CGG 0.513306 1_1:-77384147 None:intergenic
GGGGATGGGATGATGGTGGA+CGG 0.513477 1_1:-77382758 None:intergenic
TATCTAACTACACTAGTGAT+AGG 0.516941 1_1:+77382487 Msa0045440:five_prime_UTR
TGGTGGGGATGGGATGATGG+TGG 0.525480 1_1:-77382762 None:intergenic
ATTCTGCCATTTACTGGTGA+AGG 0.527022 1_1:+77387089 Msa0045440:CDS
CGTTGGCTGGTCCAATCGAC+AGG 0.527454 1_1:+77383382 Msa0045440:CDS
GGTGTACTTCGCAGATGGCT+GGG 0.535542 1_1:+77386843 Msa0045440:CDS
AAATCATTTGGGTAAAGAGC+AGG 0.535966 1_1:+77382637 Msa0045440:five_prime_UTR
ATCACTAGTGTAGTTAGATA+GGG 0.545148 1_1:-77382484 None:intergenic
ACGGTGGGATGGTGGAGAAG+AGG 0.545601 1_1:-77382739 None:intergenic
TCAGGGCAGCAGATGCAGTA+GGG 0.546616 1_1:+77382913 Msa0045440:five_prime_UTR
TGAACGAACGAGTGGAATGA+CGG 0.547308 1_1:+77383246 Msa0045440:five_prime_UTR
AAATATGCATGGCCAGGAGT+TGG 0.548163 1_1:+77386954 Msa0045440:CDS
ATGGTGGAGAAGAGGATGAA+GGG 0.549645 1_1:-77382731 None:intergenic
GACAAACCATCATCTTGCCT+GGG 0.553812 1_1:+77384089 Msa0045440:CDS
AGACAGAGAGAGAACGTGAA+GGG 0.554062 1_1:-77382693 None:intergenic
AACGCATGTTAACATGCGTA+GGG 0.558177 1_1:+77382583 Msa0045440:five_prime_UTR
ATTGAGGATAGGCCAACTCC+TGG 0.560143 1_1:-77386966 None:intergenic
AGCAGCAGCAATTTCTGGGG+TGG 0.560422 1_1:-77386994 None:intergenic
GATCAGAAATATGCATGGCC+AGG 0.562033 1_1:+77386948 Msa0045440:CDS
GAGAAGGACGAGTGATGGTG+GGG 0.568649 1_1:-77382777 None:intergenic
TTGACTGTTGTTGATTACCT+TGG 0.569833 1_1:+77387288 Msa0045440:CDS
GGATACCAAATCGAAGGAGG+TGG 0.573334 1_1:-77384160 None:intergenic
AGGTCGTCGTACCTGTCGAT+TGG 0.577304 1_1:-77383393 None:intergenic
ACTCAGAGGAGAAATAGGAT+TGG 0.577314 1_1:-77382965 None:intergenic
TTTGAGATCAGAAATATGCA+TGG 0.581381 1_1:+77386943 Msa0045440:CDS
GTTGCAGTTGAAAAGAAGGA+TGG 0.584869 1_1:+77386817 Msa0045440:CDS
TCCAAACTATAACGAGATTG+AGG 0.593219 1_1:+77386795 Msa0045440:CDS
ACACTAGTGATAGGTCATGA+TGG 0.604326 1_1:+77382496 Msa0045440:five_prime_UTR
ACGGAGCTTCCTTCTGTTCG+GGG 0.605518 1_1:+77384119 Msa0045440:CDS
AAGACAGAGAGAGAACGTGA+AGG 0.606328 1_1:-77382694 None:intergenic
GGAAAGGTGTACTTCGCAGA+TGG 0.607746 1_1:+77386838 Msa0045440:CDS
CAGGGCAGCAGATGCAGTAG+GGG 0.608264 1_1:+77382914 Msa0045440:five_prime_UTR
TAACGCATGTTAACATGCGT+AGG 0.609137 1_1:+77382582 Msa0045440:five_prime_UTR
GGGTGGATTGGATTGAGGAT+AGG 0.609663 1_1:-77386977 None:intergenic
CTGTCGATTGGACCAGCCAA+CGG 0.616730 1_1:-77383381 None:intergenic
AGGTGGAGCTCGAAGCCGGA+AGG 0.617798 1_1:-77384143 None:intergenic
GCTTGAACAAAGGTGAAACA+TGG 0.618233 1_1:+77383217 Msa0045440:five_prime_UTR
CAGTCAATTCAGTCCTCTCG+GGG 0.621421 1_1:-77387272 None:intergenic
ATTGCAACGGAAATGAGTAC+AGG 0.621467 1_1:-77387497 None:intergenic
TTCAGGGCAGCAGATGCAGT+AGG 0.631594 1_1:+77382912 Msa0045440:five_prime_UTR
GCGGAAGTTGAAGATTCCGT+TGG 0.632664 1_1:+77383365 Msa0045440:CDS
AGTTGAAAAGAAGGATGGAA+AGG 0.635830 1_1:+77386822 Msa0045440:CDS
AACACACGAGGAAAGCATGT+TGG 0.637782 1_1:-77386736 None:intergenic
CCAACAGGATACCAAATCGA+AGG 0.639694 1_1:-77384166 None:intergenic
GGAGGAAATGAACGAACGAG+TGG 0.640086 1_1:+77383238 Msa0045440:five_prime_UTR
TCAGTTTCCAAGTGTAACCA+AGG 0.644121 1_1:-77387305 None:intergenic
GTCAATTCAGTCCTCTCGGG+GGG 0.645033 1_1:-77387270 None:intergenic
AGGGCAGCAGATGCAGTAGG+GGG 0.647544 1_1:+77382915 Msa0045440:five_prime_UTR
CGCAAGCTATCAAAGTGATG+CGG 0.649386 1_1:+77383346 Msa0045440:CDS
TGAAGTCGATGCTTGAACAA+AGG 0.658666 1_1:+77383207 Msa0045440:intron
CGTGAAGGGAATGAGAAAAG+GGG 0.671933 1_1:-77382679 None:intergenic
GTGAAGGGAATGAGAAAAGG+GGG 0.673980 1_1:-77382678 None:intergenic
TTTAGCAGCAGCAATTTCTG+GGG 0.674457 1_1:-77386997 None:intergenic
ACAGGATACCAAATCGAAGG+AGG 0.685005 1_1:-77384163 None:intergenic
ACATAGAATTGAGAAAACAA+AGG 0.685483 1_1:-77387439 None:intergenic
ACTTCTAAGCCAAACACACG+AGG 0.689309 1_1:-77386748 None:intergenic
AGTCAATTCAGTCCTCTCGG+GGG 0.695605 1_1:-77387271 None:intergenic
TGAACAAAGGTGAAACATGG+AGG 0.698848 1_1:+77383220 Msa0045440:five_prime_UTR
ATGGCTGGGAGATCATTCAG+AGG 0.704131 1_1:+77386857 Msa0045440:CDS
GTAGCGTGACTTAAGTCACG+TGG 0.717771 1_1:-77382544 None:intergenic
CACACGAGACACCTTCATCG+TGG 0.729627 1_1:-77387341 None:intergenic
ACGCATGTTAACATGCGTAG+GGG 0.733415 1_1:+77382584 Msa0045440:five_prime_UTR
GACTGCAGCTTACAACACAT+AGG 0.734195 1_1:-77387475 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATGAAAAGAATTATTT+TGG - chr1_1:77382339-77382358 None:intergenic 10.0%
!! ATATAATATTAGTTACATAT+TGG + chr1_1:77382361-77382380 Msa0045440:five_prime_UTR 10.0%
!!! TATTATAGAAATTTTCAAAT+TGG + chr1_1:77383479-77383498 Msa0045440:intron 10.0%
!!! ATTATAGAAATTTTCAAATT+GGG + chr1_1:77383480-77383499 Msa0045440:intron 10.0%
!!! TATATTTAAGATCATTTTAT+TGG + chr1_1:77386465-77386484 Msa0045440:intron 10.0%
!! TTTGAAAATTTAATCAAAAT+GGG + chr1_1:77387367-77387386 Msa0045440:exon 10.0%
!!! TTGTGTAATTTTGATATTTA+TGG - chr1_1:77382387-77382406 None:intergenic 15.0%
!! GAAATTGAAAAAAAAAAGTA+TGG - chr1_1:77382810-77382829 None:intergenic 15.0%
!!! CAAATTTATTGAGATTTTTA+GGG - chr1_1:77382872-77382891 None:intergenic 15.0%
!! AATCATTTCATCATTTAAAA+AGG - chr1_1:77383157-77383176 None:intergenic 15.0%
!!! TTATAGAAATTTTCAAATTG+GGG + chr1_1:77383481-77383500 Msa0045440:intron 15.0%
!!! TTTTACCACTAATAATATAA+AGG - chr1_1:77383720-77383739 None:intergenic 15.0%
!!! TTTTAAACAAAAATCAGAAA+TGG - chr1_1:77384364-77384383 None:intergenic 15.0%
!! TAAAATTTAAATTTCGTTTC+TGG + chr1_1:77384379-77384398 Msa0045440:intron 15.0%
!! TTGAATTTAAAGATTGTATA+AGG - chr1_1:77384965-77384984 None:intergenic 15.0%
!! TTTAATATTAAAACAATTGG+TGG - chr1_1:77385203-77385222 None:intergenic 15.0%
!! TGATAAACTAATACTAATAT+CGG + chr1_1:77385356-77385375 Msa0045440:intron 15.0%
!!! AAATGCATTTTAAATTGTAA+TGG + chr1_1:77385533-77385552 Msa0045440:intron 15.0%
!! AAGATAAAAAAAAGATGAAA+GGG - chr1_1:77386107-77386126 None:intergenic 15.0%
!! AAAGATAAAAAAAAGATGAA+AGG - chr1_1:77386108-77386127 None:intergenic 15.0%
!! AATTATAGTTTCAGTAAATA+TGG + chr1_1:77386230-77386249 Msa0045440:intron 15.0%
!!! TTTATATTGATTTAGTTAGT+TGG - chr1_1:77386343-77386362 None:intergenic 15.0%
!! CTAAATCAATATAAATCTTA+AGG + chr1_1:77386348-77386367 Msa0045440:intron 15.0%
!!! TTTTTTGATGTTATTTGTTT+TGG + chr1_1:77386609-77386628 Msa0045440:intron 15.0%
!!! CTTTGAAAATTTAATCAAAA+TGG + chr1_1:77387366-77387385 Msa0045440:exon 15.0%
!! AATCATTACATATCTTAAAA+AGG - chr1_1:77387528-77387547 None:intergenic 15.0%
!!! TGAAAAACTAATTTTTGAAA+AGG - chr1_1:77387598-77387617 None:intergenic 15.0%
!!! CCAAATTTATTGAGATTTTT+AGG - chr1_1:77382873-77382892 None:intergenic 20.0%
!! CCTAAAAATCTCAATAAATT+TGG + chr1_1:77382870-77382889 Msa0045440:five_prime_UTR 20.0%
!!! AATTTATAGACTTTTGTTGA+TGG + chr1_1:77383073-77383092 Msa0045440:intron 20.0%
!!! ATTTATAGACTTTTGTTGAT+GGG + chr1_1:77383074-77383093 Msa0045440:intron 20.0%
!! TTCATCATTTAAAAAGGTTA+AGG - chr1_1:77383151-77383170 None:intergenic 20.0%
!! ATAATTGTTGTCCATATAAT+TGG + chr1_1:77383431-77383450 Msa0045440:intron 20.0%
!!! TATAGAAATTTTCAAATTGG+GGG + chr1_1:77383482-77383501 Msa0045440:intron 20.0%
!!! GTTTTCCTTTATATTATTAG+TGG + chr1_1:77383712-77383731 Msa0045440:intron 20.0%
!!! TGTGTTTCTTTTGATTTTTT+TGG + chr1_1:77384778-77384797 Msa0045440:intron 20.0%
!! ATTTAAAGATTGTATAAGGA+AGG - chr1_1:77384961-77384980 None:intergenic 20.0%
!! CATGTTCAAATGTTAAAAAT+GGG + chr1_1:77385038-77385057 Msa0045440:intron 20.0%
!!! AAAAATCTTGTTTTTCCATA+GGG - chr1_1:77385065-77385084 None:intergenic 20.0%
!!! AAAAAATCTTGTTTTTCCAT+AGG - chr1_1:77385066-77385085 None:intergenic 20.0%
!! TAAGTAAAAGTAAGTTTGTA+TGG + chr1_1:77385143-77385162 Msa0045440:intron 20.0%
!! AAGTAAAAGTAAGTTTGTAT+GGG + chr1_1:77385144-77385163 Msa0045440:intron 20.0%
!!! GATGATTCTTTTTAAGTTTT+TGG - chr1_1:77385259-77385278 None:intergenic 20.0%
!!! GATTTAATTTGCATTGTTAA+TGG + chr1_1:77385451-77385470 Msa0045440:intron 20.0%
!!! GTAATTGAGACTTTTATATT+TGG + chr1_1:77385572-77385591 Msa0045440:intron 20.0%
!! AAAAAAATCAATAGACATCT+TGG - chr1_1:77385676-77385695 None:intergenic 20.0%
!!! ATTTTGATTTAGTTATCAGT+TGG - chr1_1:77386263-77386282 None:intergenic 20.0%
!! ATCAATATAAATCTTAAGGA+AGG + chr1_1:77386352-77386371 Msa0045440:intron 20.0%
!! TGAAACTATACTATATTTGT+TGG + chr1_1:77386551-77386570 Msa0045440:intron 20.0%
!! ATTATGAACAGAAACTAAAT+TGG + chr1_1:77387223-77387242 Msa0045440:intron 20.0%
!! GTAGTTTGGTATTTTACTTT+GGG + chr1_1:77382606-77382625 Msa0045440:five_prime_UTR 25.0%
!! AAAAAAAAAGTATGGAAGAG+AGG - chr1_1:77382802-77382821 None:intergenic 25.0%
! AAAAAAAAAACTCAGATCCA+TGG - chr1_1:77383005-77383024 None:intergenic 25.0%
! CAGTTGTAAAAACAAATTTG+TGG - chr1_1:77383034-77383053 None:intergenic 25.0%
! AAGAAGAAAACAGTATCATT+AGG - chr1_1:77383182-77383201 None:intergenic 25.0%
!!! ATTATCTTGATTTTGGAAGA+AGG - chr1_1:77383416-77383435 None:intergenic 25.0%
!! GACAACAATTATCTTGATTT+TGG - chr1_1:77383423-77383442 None:intergenic 25.0%
!! ATAGAAATTTTCAAATTGGG+GGG + chr1_1:77383483-77383502 Msa0045440:intron 25.0%
! AGCAAGAACATTTGTTTAAT+TGG + chr1_1:77383516-77383535 Msa0045440:intron 25.0%
!! TCTAGAACATATAAAAGAGA+TGG - chr1_1:77383600-77383619 None:intergenic 25.0%
!!! TCTCTTTTATATGTTCTAGA+AGG + chr1_1:77383600-77383619 Msa0045440:intron 25.0%
! TATATTCACTTCTATCAGTT+GGG - chr1_1:77383796-77383815 None:intergenic 25.0%
! TTATATTCACTTCTATCAGT+TGG - chr1_1:77383797-77383816 None:intergenic 25.0%
! ACTGATAGAAGTGAATATAA+TGG + chr1_1:77383797-77383816 Msa0045440:intron 25.0%
! CTGATAGAAGTGAATATAAT+GGG + chr1_1:77383798-77383817 Msa0045440:intron 25.0%
! ATGGGATATTCAATCAATAT+CGG + chr1_1:77383816-77383835 Msa0045440:intron 25.0%
!! CAGGTTCACATAAATTTTTA+AGG + chr1_1:77383941-77383960 Msa0045440:intron 25.0%
! GGAAAATGAAGATGATTTAT+GGG - chr1_1:77384028-77384047 None:intergenic 25.0%
!!! TCTGGATTTTTAGTAAGATT+TGG + chr1_1:77384397-77384416 Msa0045440:intron 25.0%
!!! TTAGTAAGATTTGGTGAATT+TGG + chr1_1:77384406-77384425 Msa0045440:intron 25.0%
! AACTCAATCAAACTTAAAGA+TGG - chr1_1:77384637-77384656 None:intergenic 25.0%
! AATGTATTGTCTTACGTATT+AGG + chr1_1:77384875-77384894 Msa0045440:intron 25.0%
!!! ATGACTCTGAAATTTTGAAA+TGG + chr1_1:77384905-77384924 Msa0045440:intron 25.0%
!!! CCATTTTTAACATTTGAACA+TGG - chr1_1:77385040-77385059 None:intergenic 25.0%
! CCATGTTCAAATGTTAAAAA+TGG + chr1_1:77385037-77385056 Msa0045440:intron 25.0%
!!! AAAATCTTGTTTTTCCATAG+GGG - chr1_1:77385064-77385083 None:intergenic 25.0%
!!! TCATTTTGTTTAGTGCAAAA+TGG + chr1_1:77385277-77385296 Msa0045440:intron 25.0%
!!! CATTTTGTTTAGTGCAAAAT+GGG + chr1_1:77385278-77385297 Msa0045440:intron 25.0%
!! AATATAACACTCAAAAGTGT+TGG - chr1_1:77385716-77385735 None:intergenic 25.0%
!! ATAGTTTCTAAAAGCCATAT+TGG - chr1_1:77385982-77386001 None:intergenic 25.0%
!!! ATATGGCTTTTAGAAACTAT+TGG + chr1_1:77385982-77386001 Msa0045440:intron 25.0%
!!! TATGTTATTTTGTCTAGCTA+AGG + chr1_1:77386132-77386151 Msa0045440:intron 25.0%
! ATTGTCATCATTTATTGCAA+TGG - chr1_1:77386380-77386399 None:intergenic 25.0%
! ATTGCAATAAATGATGACAA+TGG + chr1_1:77386379-77386398 Msa0045440:intron 25.0%
! TTGAACTATATATGCTTTGA+TGG + chr1_1:77386506-77386525 Msa0045440:intron 25.0%
!! GTTACAATGTGTTTTCAATA+TGG + chr1_1:77386579-77386598 Msa0045440:intron 25.0%
! TCTAATGTATTTGTAGAAGA+AGG + chr1_1:77386705-77386724 Msa0045440:intron 25.0%
! CTAATGTATTTGTAGAAGAA+GGG + chr1_1:77386706-77386725 Msa0045440:intron 25.0%
! TCTCAAAAAGAAAGATATGT+CGG - chr1_1:77386930-77386949 None:intergenic 25.0%
! ATTACAGAGACTCATTTATT+CGG + chr1_1:77387034-77387053 Msa0045440:CDS 25.0%
! TCGTATTTACTTATGACATT+TGG + chr1_1:77387182-77387201 Msa0045440:intron 25.0%
! ACATAGAATTGAGAAAACAA+AGG - chr1_1:77387442-77387461 None:intergenic 25.0%
!! TTTTCTCAATTCTATGTGTT+TGG + chr1_1:77387445-77387464 Msa0045440:three_prime_UTR 25.0%
! TAAAAAGGAAGAAATTGCAA+CGG - chr1_1:77387513-77387532 None:intergenic 25.0%
TAGACCACCAAAAAATATGT+CGG + chr1_1:77382407-77382426 Msa0045440:five_prime_UTR 30.0%
GTGTAATACCACCAAAAAAT+AGG + chr1_1:77382431-77382450 Msa0045440:five_prime_UTR 30.0%
! AGATAGGGTATGACATTTTT+GGG - chr1_1:77382472-77382491 None:intergenic 30.0%
! TAGATAGGGTATGACATTTT+TGG - chr1_1:77382473-77382492 None:intergenic 30.0%
ATCACTAGTGTAGTTAGATA+GGG - chr1_1:77382487-77382506 None:intergenic 30.0%
TATCACTAGTGTAGTTAGAT+AGG - chr1_1:77382488-77382507 None:intergenic 30.0%
TATCTAACTACACTAGTGAT+AGG + chr1_1:77382487-77382506 Msa0045440:five_prime_UTR 30.0%
! GGTAGTTTGGTATTTTACTT+TGG + chr1_1:77382605-77382624 Msa0045440:five_prime_UTR 30.0%
TTAAGTGTTTCAGATGATTC+AGG + chr1_1:77382895-77382914 Msa0045440:five_prime_UTR 30.0%
TAAGTGTTTCAGATGATTCA+GGG + chr1_1:77382896-77382915 Msa0045440:five_prime_UTR 30.0%
AAACTCATAAACATACTCAG+AGG - chr1_1:77382982-77383001 None:intergenic 30.0%
AGTATGTTTATGAGTTTCCA+TGG + chr1_1:77382985-77383004 Msa0045440:intron 30.0%
ATGTGCAATAACAATTTCTC+TGG + chr1_1:77383300-77383319 Msa0045440:CDS 30.0%
TAAAATACTGACCTCATAGA+AGG - chr1_1:77383676-77383695 None:intergenic 30.0%
ATTTATGTGAACCTGCTAAT+AGG - chr1_1:77383936-77383955 None:intergenic 30.0%
AAGATGATTTATGGGAAGAT+GGG - chr1_1:77384020-77384039 None:intergenic 30.0%
GGGAAAATGAAGATGATTTA+TGG - chr1_1:77384029-77384048 None:intergenic 30.0%
CAGATTTGAAGATGGTTTAT+GGG - chr1_1:77384049-77384068 None:intergenic 30.0%
TCAGATTTGAAGATGGTTTA+TGG - chr1_1:77384050-77384069 None:intergenic 30.0%
! TTTGAGATCAGATTTGAAGA+TGG - chr1_1:77384057-77384076 None:intergenic 30.0%
TGAAAACTGATGTGATCAAA+AGG + chr1_1:77384213-77384232 Msa0045440:intron 30.0%
!! ATGATGTTTTTAACAGTGAC+TGG + chr1_1:77384260-77384279 Msa0045440:intron 30.0%
TATTGTAAACTACACATACC+AGG - chr1_1:77384325-77384344 None:intergenic 30.0%
! TGAAACTTGTCTTTTCCTTT+TGG - chr1_1:77384511-77384530 None:intergenic 30.0%
GTATTATGCTTATAGTTAGC+AGG + chr1_1:77384583-77384602 Msa0045440:intron 30.0%
CAAAAGAAACACATGTTTAC+AGG - chr1_1:77384771-77384790 None:intergenic 30.0%
TTGAAATGGATGTCTACATT+TGG + chr1_1:77384919-77384938 Msa0045440:intron 30.0%
AAAAGTAAGTTTGTATGGGA+AGG + chr1_1:77385148-77385167 Msa0045440:intron 30.0%
CAATTACATACACAACTACT+AGG - chr1_1:77385559-77385578 None:intergenic 30.0%
!! GAAAACTGTTGATTCAATCA+TGG - chr1_1:77386062-77386081 None:intergenic 30.0%
! ATGACAATGGTAAAGCTTTT+TGG + chr1_1:77386392-77386411 Msa0045440:intron 30.0%
TTATAGTACCTATATGTCGT+AGG - chr1_1:77386440-77386459 None:intergenic 30.0%
! CAGAGGTTTTACAAGATTTT+TGG + chr1_1:77386874-77386893 Msa0045440:CDS 30.0%
!!! ACAAGATTTTTGGTTGTACT+TGG + chr1_1:77386884-77386903 Msa0045440:intron 30.0%
! TTTGAGATCAGAAATATGCA+TGG + chr1_1:77386943-77386962 Msa0045440:CDS 30.0%
! AGTAAATGGCAGAATTTTGT+GGG - chr1_1:77387084-77387103 None:intergenic 30.0%
! AACAGAAACTAAATTGGCTT+GGG + chr1_1:77387229-77387248 Msa0045440:intron 30.0%
! TGAGATTTTCTCCAGAATTT+AGG + chr1_1:77387410-77387429 Msa0045440:three_prime_UTR 30.0%
AAAGGATTAAGCCTAAATTC+TGG - chr1_1:77387424-77387443 None:intergenic 30.0%
AGACCACCAAAAAATATGTC+GGG + chr1_1:77382408-77382427 Msa0045440:five_prime_UTR 35.0%
!!! TTACACCCCGACATATTTTT+TGG - chr1_1:77382417-77382436 None:intergenic 35.0%
AAATCATTTGGGTAAAGAGC+AGG + chr1_1:77382637-77382656 Msa0045440:five_prime_UTR 35.0%
AACATACTCAGAGGAGAAAT+AGG - chr1_1:77382973-77382992 None:intergenic 35.0%
TCTCTGGTCAAAACTTTGAT+CGG + chr1_1:77383316-77383335 Msa0045440:CDS 35.0%
TTGTCCATATAATTGGTGTG+TGG + chr1_1:77383438-77383457 Msa0045440:intron 35.0%
CAAACCACACACCAATTATA+TGG - chr1_1:77383445-77383464 None:intergenic 35.0%
CATATAATTGGTGTGTGGTT+TGG + chr1_1:77383443-77383462 Msa0045440:intron 35.0%
! AAATTTTCAAATTGGGGGGT+TGG + chr1_1:77383487-77383506 Msa0045440:intron 35.0%
GAAGATGATTTATGGGAAGA+TGG - chr1_1:77384021-77384040 None:intergenic 35.0%
ATCTTGCCTGGGTTTAAAAA+CGG + chr1_1:77384100-77384119 Msa0045440:CDS 35.0%
CAAAAGGATTGTAGTTTCGA+TGG + chr1_1:77384229-77384248 Msa0045440:intron 35.0%
TAAACTACACATACCAGGAT+GGG - chr1_1:77384320-77384339 None:intergenic 35.0%
! CTTTTGGCATAAAGCTGAAT+CGG - chr1_1:77384495-77384514 None:intergenic 35.0%
! ACAAAATATCTAGCTCGAAG+AGG - chr1_1:77384814-77384833 None:intergenic 35.0%
TGAAGCATAAAAGCAGTGTT+GGG - chr1_1:77384850-77384869 None:intergenic 35.0%
TTGAAGCATAAAAGCAGTGT+TGG - chr1_1:77384851-77384870 None:intergenic 35.0%
TCATCTCATTATCAGAGTCA+GGG + chr1_1:77384993-77385012 Msa0045440:intron 35.0%
ATAGAATGCACTTGAGTCAT+CGG - chr1_1:77385636-77385655 None:intergenic 35.0%
GATTAAAAGCCTTGAAGAGA+TGG + chr1_1:77385926-77385945 Msa0045440:intron 35.0%
TCTTTAACTCCATCTCTTCA+AGG - chr1_1:77385938-77385957 None:intergenic 35.0%
GATTGAACAACATCATGTCA+TGG + chr1_1:77386006-77386025 Msa0045440:intron 35.0%
!! AACTGTTGATTCAATCATGG+AGG - chr1_1:77386059-77386078 None:intergenic 35.0%
TTTGTCTAGCTAAGGCAATT+AGG + chr1_1:77386140-77386159 Msa0045440:intron 35.0%
ATTAGGAGAGGAGTAATATG+TGG + chr1_1:77386157-77386176 Msa0045440:intron 35.0%
GTTTGACACCACTAATATAC+AGG + chr1_1:77386313-77386332 Msa0045440:intron 35.0%
TTGGTTCACCTGTATATTAG+TGG - chr1_1:77386324-77386343 None:intergenic 35.0%
! ACAATGGTAAAGCTTTTTGG+AGG + chr1_1:77386395-77386414 Msa0045440:intron 35.0%
CAATAACACCTACGACATAT+AGG + chr1_1:77386429-77386448 Msa0045440:intron 35.0%
GGATCACGTATCATAACAAA+AGG - chr1_1:77386778-77386797 None:intergenic 35.0%
TCCAAACTATAACGAGATTG+AGG + chr1_1:77386795-77386814 Msa0045440:CDS 35.0%
ACCTCAATCTCGTTATAGTT+TGG - chr1_1:77386799-77386818 None:intergenic 35.0%
AGTTGAAAAGAAGGATGGAA+AGG + chr1_1:77386822-77386841 Msa0045440:CDS 35.0%
ATTTAGCAGCAGCAATTTCT+GGG - chr1_1:77387001-77387020 None:intergenic 35.0%
ATTGCTGCTGCTAAATCAAA+AGG + chr1_1:77387005-77387024 Msa0045440:CDS 35.0%
AGAGACTCATTTATTCGGTA+TGG + chr1_1:77387039-77387058 Msa0045440:CDS 35.0%
! CAGTAAATGGCAGAATTTTG+TGG - chr1_1:77387085-77387104 None:intergenic 35.0%
! CACAAAATTCTGCCATTTAC+TGG + chr1_1:77387083-77387102 Msa0045440:CDS 35.0%
GTTAATTACCACAAAGATGC+TGG + chr1_1:77387129-77387148 Msa0045440:intron 35.0%
GAACAGAAACTAAATTGGCT+TGG + chr1_1:77387228-77387247 Msa0045440:intron 35.0%
! TTGACTGTTGTTGATTACCT+TGG + chr1_1:77387288-77387307 Msa0045440:CDS 35.0%
TTGATTACCTTGGTTACACT+TGG + chr1_1:77387298-77387317 Msa0045440:CDS 35.0%
GACCACCAAAAAATATGTCG+GGG + chr1_1:77382409-77382428 Msa0045440:five_prime_UTR 40.0%
!!! GTGTTCGTCCTATTTTTTGG+TGG - chr1_1:77382442-77382461 None:intergenic 40.0%
!!! TGGGTGTTCGTCCTATTTTT+TGG - chr1_1:77382445-77382464 None:intergenic 40.0%
!!! TATGACATTTTTGGGTCGGT+GGG - chr1_1:77382464-77382483 None:intergenic 40.0%
!!! AGGGTATGACATTTTTGGGT+CGG - chr1_1:77382468-77382487 None:intergenic 40.0%
ACACTAGTGATAGGTCATGA+TGG + chr1_1:77382496-77382515 Msa0045440:five_prime_UTR 40.0%
TAACGCATGTTAACATGCGT+AGG + chr1_1:77382582-77382601 Msa0045440:five_prime_UTR 40.0%
AACGCATGTTAACATGCGTA+GGG + chr1_1:77382583-77382602 Msa0045440:five_prime_UTR 40.0%
TGGGAATGAGCGAAATCATT+TGG + chr1_1:77382625-77382644 Msa0045440:five_prime_UTR 40.0%
GGGAATGAGCGAAATCATTT+GGG + chr1_1:77382626-77382645 Msa0045440:five_prime_UTR 40.0%
AGAAAAGGGGGACTAAAATG+AGG - chr1_1:77382669-77382688 None:intergenic 40.0%
ACGTGAAGGGAATGAGAAAA+GGG - chr1_1:77382683-77382702 None:intergenic 40.0%
AACGTGAAGGGAATGAGAAA+AGG - chr1_1:77382684-77382703 None:intergenic 40.0%
AAAGTATGGAAGAGAGGAGA+AGG - chr1_1:77382796-77382815 None:intergenic 40.0%
ACTCAGAGGAGAAATAGGAT+TGG - chr1_1:77382968-77382987 None:intergenic 40.0%
TTGATGGGAATGTGAGCTTT+GGG + chr1_1:77383089-77383108 Msa0045440:five_prime_UTR 40.0%
TGAAGTCGATGCTTGAACAA+AGG + chr1_1:77383207-77383226 Msa0045440:intron 40.0%
GCTTGAACAAAGGTGAAACA+TGG + chr1_1:77383217-77383236 Msa0045440:five_prime_UTR 40.0%
TGAACAAAGGTGAAACATGG+AGG + chr1_1:77383220-77383239 Msa0045440:five_prime_UTR 40.0%
!! ACGGATTTGATTTTGACGCA+AGG + chr1_1:77383265-77383284 Msa0045440:five_prime_UTR 40.0%
!! CGGATTTGATTTTGACGCAA+GGG + chr1_1:77383266-77383285 Msa0045440:five_prime_UTR 40.0%
!! GGATTTGATTTTGACGCAAG+GGG + chr1_1:77383267-77383286 Msa0045440:five_prime_UTR 40.0%
TAGAAGGTTTATGCAGCAGT+TGG + chr1_1:77383616-77383635 Msa0045440:intron 40.0%
AGAAGGTTTATGCAGCAGTT+GGG + chr1_1:77383617-77383636 Msa0045440:intron 40.0%
!!! TTGTTTTAGCGCCTTCTATG+AGG + chr1_1:77383662-77383681 Msa0045440:intron 40.0%
TACTTTCAGTCTCCGTTAAG+TGG + chr1_1:77383854-77383873 Msa0045440:intron 40.0%
ACTTTCAGTCTCCGTTAAGT+GGG + chr1_1:77383855-77383874 Msa0045440:intron 40.0%
CCAAGCAGCAAAATCACATA+AGG - chr1_1:77383900-77383919 None:intergenic 40.0%
! CCTTATGTGATTTTGCTGCT+TGG + chr1_1:77383897-77383916 Msa0045440:intron 40.0%
!! TTTTGCTGCTTGGAGTTTTG+TGG + chr1_1:77383907-77383926 Msa0045440:intron 40.0%
! TTTTGTGGTTGCCTATTAGC+AGG + chr1_1:77383922-77383941 Msa0045440:intron 40.0%
TTTAAACCCAGGCAAGATGA+TGG - chr1_1:77384098-77384117 None:intergenic 40.0%
TAACAGTGACTGGTGTTTAG+CGG + chr1_1:77384270-77384289 Msa0045440:intron 40.0%
GTAAACTACACATACCAGGA+TGG - chr1_1:77384321-77384340 None:intergenic 40.0%
! CGATTCAGCTTTATGCCAAA+AGG + chr1_1:77384493-77384512 Msa0045440:intron 40.0%
TATGCTTATAGTTAGCAGGC+AGG + chr1_1:77384587-77384606 Msa0045440:intron 40.0%
! ATATCTAGCTCGAAGAGGAT+AGG - chr1_1:77384809-77384828 None:intergenic 40.0%
! AAAGCAGTGTTGGGCAAAAT+GGG - chr1_1:77384841-77384860 None:intergenic 40.0%
! AAAAGCAGTGTTGGGCAAAA+TGG - chr1_1:77384842-77384861 None:intergenic 40.0%
CTCATCTCATTATCAGAGTC+AGG + chr1_1:77384992-77385011 Msa0045440:intron 40.0%
ATGTTAAAAATGGGCCCCTA+TGG + chr1_1:77385047-77385066 Msa0045440:intron 40.0%
CTTGGAATTCATATCCTCGT+TGG - chr1_1:77385890-77385909 None:intergenic 40.0%
ACGAGGATATGAATTCCAAG+AGG + chr1_1:77385890-77385909 Msa0045440:intron 40.0%
! CTTTGTCGACTACACCAATA+TGG + chr1_1:77385965-77385984 Msa0045440:intron 40.0%
GTCATGGCTCAAATTCAATC+TGG + chr1_1:77386022-77386041 Msa0045440:intron 40.0%
AAAAGATGAAAGGGACTCAC+AGG - chr1_1:77386098-77386117 None:intergenic 40.0%
!! TAAAGCTTTTTGGAGGAAGC+AGG + chr1_1:77386402-77386421 Msa0045440:intron 40.0%
GTGTTGCATGCAGAAAGAAA+TGG + chr1_1:77386643-77386662 Msa0045440:intron 40.0%
TGAGGTTGCAGTTGAAAAGA+AGG + chr1_1:77386813-77386832 Msa0045440:CDS 40.0%
GTTGCAGTTGAAAAGAAGGA+TGG + chr1_1:77386817-77386836 Msa0045440:CDS 40.0%
TTTAGCAGCAGCAATTTCTG+GGG - chr1_1:77387000-77387019 None:intergenic 40.0%
GATTTAGCAGCAGCAATTTC+TGG - chr1_1:77387002-77387021 None:intergenic 40.0%
! ATTCTGCCATTTACTGGTGA+AGG + chr1_1:77387089-77387108 Msa0045440:CDS 40.0%
AACAGTCAATTCAGTCCTCT+CGG - chr1_1:77387277-77387296 None:intergenic 40.0%
TCAGTTTCCAAGTGTAACCA+AGG - chr1_1:77387308-77387327 None:intergenic 40.0%
TTCATCGTGGCAGAAATTCA+TGG - chr1_1:77387331-77387350 None:intergenic 40.0%
ATGAATTTCTGCCACGATGA+AGG + chr1_1:77387330-77387349 Msa0045440:CDS 40.0%
ATTGCAACGGAAATGAGTAC+AGG - chr1_1:77387500-77387519 None:intergenic 40.0%
!!! CACCCCGACATATTTTTTGG+TGG - chr1_1:77382414-77382433 None:intergenic 45.0%
!!! GTATGACATTTTTGGGTCGG+TGG - chr1_1:77382465-77382484 None:intergenic 45.0%
ACGCATGTTAACATGCGTAG+GGG + chr1_1:77382584-77382603 Msa0045440:five_prime_UTR 45.0%
TAACATGCGTAGGGGTAGTT+TGG + chr1_1:77382592-77382611 Msa0045440:five_prime_UTR 45.0%
GTGAAGGGAATGAGAAAAGG+GGG - chr1_1:77382681-77382700 None:intergenic 45.0%
CGTGAAGGGAATGAGAAAAG+GGG - chr1_1:77382682-77382701 None:intergenic 45.0%
AGACAGAGAGAGAACGTGAA+GGG - chr1_1:77382696-77382715 None:intergenic 45.0%
AAGACAGAGAGAGAACGTGA+AGG - chr1_1:77382697-77382716 None:intergenic 45.0%
AGAAGAGGATGAAGGGTTGA+GGG - chr1_1:77382727-77382746 None:intergenic 45.0%
! ATGGTGGAGAAGAGGATGAA+GGG - chr1_1:77382734-77382753 None:intergenic 45.0%
! GTTGATGGGAATGTGAGCTT+TGG + chr1_1:77383088-77383107 Msa0045440:five_prime_UTR 45.0%
!! AATGTGAGCTTTGGGTTTGC+AGG + chr1_1:77383097-77383116 Msa0045440:five_prime_UTR 45.0%
TGAACGAACGAGTGGAATGA+CGG + chr1_1:77383246-77383265 Msa0045440:five_prime_UTR 45.0%
! CGCATCACTTTGATAGCTTG+CGG - chr1_1:77383348-77383367 None:intergenic 45.0%
CGCAAGCTATCAAAGTGATG+CGG + chr1_1:77383346-77383365 Msa0045440:CDS 45.0%
AAGTTGAAGATTCCGTTGGC+TGG + chr1_1:77383369-77383388 Msa0045440:CDS 45.0%
GAAGGTTTATGCAGCAGTTG+GGG + chr1_1:77383618-77383637 Msa0045440:intron 45.0%
CAGTAGCTGATCCCACTTAA+CGG - chr1_1:77383869-77383888 None:intergenic 45.0%
GACAAACCATCATCTTGCCT+GGG + chr1_1:77384089-77384108 Msa0045440:CDS 45.0%
!! GAAGCTCCGTTTTTAAACCC+AGG - chr1_1:77384109-77384128 None:intergenic 45.0%
AAACGGAGCTTCCTTCTGTT+CGG + chr1_1:77384117-77384136 Msa0045440:CDS 45.0%
ACAGGATACCAAATCGAAGG+AGG - chr1_1:77384166-77384185 None:intergenic 45.0%
CCAACAGGATACCAAATCGA+AGG - chr1_1:77384169-77384188 None:intergenic 45.0%
!! CCTTCGATTTGGTATCCTGT+TGG + chr1_1:77384166-77384185 Msa0045440:CDS 45.0%
ATTGCACGAGCATAACCAAC+AGG - chr1_1:77384184-77384203 None:intergenic 45.0%
! TGTTGGTTATGCTCGTGCAA+TGG + chr1_1:77384183-77384202 Msa0045440:intron 45.0%
TTTAGCGGTGTACTCAAGGA+GGG + chr1_1:77384285-77384304 Msa0045440:intron 45.0%
GGTTGTGATTGAGTGCATGT+CGG + chr1_1:77384427-77384446 Msa0045440:intron 45.0%
! AACATGGCCTCCGATTTTAC+CGG - chr1_1:77385024-77385043 None:intergenic 45.0%
CTGATCAGAGTACGTCTCAA+CGG + chr1_1:77385813-77385832 Msa0045440:intron 45.0%
! ATTGTTCGCCGACTATTTGC+CGG - chr1_1:77385862-77385881 None:intergenic 45.0%
GGAATTCATATCCTCGTTGG+TGG - chr1_1:77385887-77385906 None:intergenic 45.0%
ACTCACAGGCATCAACAACT+TGG - chr1_1:77386084-77386103 None:intergenic 45.0%
CTAGCTAAGGCAATTAGGAG+AGG + chr1_1:77386145-77386164 Msa0045440:intron 45.0%
GGAGAGGAGTAATATGTGGT+TGG + chr1_1:77386161-77386180 Msa0045440:intron 45.0%
! AACACACGAGGAAAGCATGT+TGG - chr1_1:77386739-77386758 None:intergenic 45.0%
ACATGCTTTCCTCGTGTGTT+TGG + chr1_1:77386739-77386758 Msa0045440:CDS 45.0%
ACTTCTAAGCCAAACACACG+AGG - chr1_1:77386751-77386770 None:intergenic 45.0%
GATCAGAAATATGCATGGCC+AGG + chr1_1:77386948-77386967 Msa0045440:CDS 45.0%
AAATATGCATGGCCAGGAGT+TGG + chr1_1:77386954-77386973 Msa0045440:CDS 45.0%
TCAGCTCCTTCACCAGTAAA+TGG - chr1_1:77387098-77387117 None:intergenic 45.0%
TTCACTCACCAGCATCTTTG+TGG - chr1_1:77387140-77387159 None:intergenic 45.0%
ACAGTCAATTCAGTCCTCTC+GGG - chr1_1:77387276-77387295 None:intergenic 45.0%
GACTGCAGCTTACAACACAT+AGG - chr1_1:77387478-77387497 None:intergenic 45.0%
!!! AATTTTAATATTAAAACAAT+TGG - chr1_1:77385206-77385225 None:intergenic 5.0%
!!! ATTGTTTTAATATTAAAATT+TGG + chr1_1:77385206-77385225 Msa0045440:intron 5.0%
!!! TTGTTTTAATATTAAAATTT+GGG + chr1_1:77385207-77385226 Msa0045440:intron 5.0%
!! AAAAAATACTAATTATTTAA+CGG + chr1_1:77385429-77385448 Msa0045440:intron 5.0%
!! TATTTAAAAAAAAAAAATTG+AGG + chr1_1:77385732-77385751 Msa0045440:intron 5.0%
GTAGCGTGACTTAAGTCACG+TGG - chr1_1:77382547-77382566 None:intergenic 50.0%
GAAGAGGATGAAGGGTTGAG+GGG - chr1_1:77382726-77382745 None:intergenic 50.0%
GAGAAGAGGATGAAGGGTTG+AGG - chr1_1:77382728-77382747 None:intergenic 50.0%
!! GATGGTGGAGAAGAGGATGA+AGG - chr1_1:77382735-77382754 None:intergenic 50.0%
GGAGGAAATGAACGAACGAG+TGG + chr1_1:77383238-77383257 Msa0045440:five_prime_UTR 50.0%
GCGGAAGTTGAAGATTCCGT+TGG + chr1_1:77383365-77383384 Msa0045440:CDS 50.0%
CGTTAAGTGGGATCAGCTAC+TGG + chr1_1:77383867-77383886 Msa0045440:intron 50.0%
CGACAAACCATCATCTTGCC+TGG + chr1_1:77384088-77384107 Msa0045440:CDS 50.0%
AACGGAGCTTCCTTCTGTTC+GGG + chr1_1:77384118-77384137 Msa0045440:CDS 50.0%
GGATACCAAATCGAAGGAGG+TGG - chr1_1:77384163-77384182 None:intergenic 50.0%
GGTGTTTAGCGGTGTACTCA+AGG + chr1_1:77384281-77384300 Msa0045440:intron 50.0%
GTTTAGCGGTGTACTCAAGG+AGG + chr1_1:77384284-77384303 Msa0045440:intron 50.0%
CACTTGAGTCATCGGTCTTG+AGG - chr1_1:77385628-77385647 None:intergenic 50.0%
TTGAGGCTCCTAAGATTGCG+AGG + chr1_1:77385749-77385768 Msa0045440:intron 50.0%
CGTTGAGACGTACTCTGATC+AGG - chr1_1:77385815-77385834 None:intergenic 50.0%
AGAGTACGTCTCAACGGTGA+CGG + chr1_1:77385819-77385838 Msa0045440:intron 50.0%
GCGAACAATTACCACCAACG+AGG + chr1_1:77385873-77385892 Msa0045440:intron 50.0%
TCGTCTTCACACAGTCCTCT+TGG - chr1_1:77385908-77385927 None:intergenic 50.0%
! GGAAAGGTGTACTTCGCAGA+TGG + chr1_1:77386838-77386857 Msa0045440:CDS 50.0%
ATGGCTGGGAGATCATTCAG+AGG + chr1_1:77386857-77386876 Msa0045440:CDS 50.0%
ATTGAGGATAGGCCAACTCC+TGG - chr1_1:77386969-77386988 None:intergenic 50.0%
!! GGGTGGATTGGATTGAGGAT+AGG - chr1_1:77386980-77386999 None:intergenic 50.0%
!! TTCTGGGGTGGATTGGATTG+AGG - chr1_1:77386985-77387004 None:intergenic 50.0%
!! CAGCAATTTCTGGGGTGGAT+TGG - chr1_1:77386992-77387011 None:intergenic 50.0%
AGTCAATTCAGTCCTCTCGG+GGG - chr1_1:77387274-77387293 None:intergenic 50.0%
CAGTCAATTCAGTCCTCTCG+GGG - chr1_1:77387275-77387294 None:intergenic 50.0%
!! ATGGGATGATGGTGGACGGT+GGG - chr1_1:77382757-77382776 None:intergenic 55.0%
!! TGATGGTGGGGATGGGATGA+TGG - chr1_1:77382768-77382787 None:intergenic 55.0%
! GAGAAGGACGAGTGATGGTG+GGG - chr1_1:77382780-77382799 None:intergenic 55.0%
GGAGAAGGACGAGTGATGGT+GGG - chr1_1:77382781-77382800 None:intergenic 55.0%
AGGAGAAGGACGAGTGATGG+TGG - chr1_1:77382782-77382801 None:intergenic 55.0%
GAGAGGAGAAGGACGAGTGA+TGG - chr1_1:77382785-77382804 None:intergenic 55.0%
TTCAGGGCAGCAGATGCAGT+AGG + chr1_1:77382912-77382931 Msa0045440:five_prime_UTR 55.0%
TCAGGGCAGCAGATGCAGTA+GGG + chr1_1:77382913-77382932 Msa0045440:five_prime_UTR 55.0%
! CTGTCGATTGGACCAGCCAA+CGG - chr1_1:77383384-77383403 None:intergenic 55.0%
AGGTCGTCGTACCTGTCGAT+TGG - chr1_1:77383396-77383415 None:intergenic 55.0%
ACGGAGCTTCCTTCTGTTCG+GGG + chr1_1:77384119-77384138 Msa0045440:CDS 55.0%
GAGCTCCACCTCCTTCGATT+TGG + chr1_1:77384155-77384174 Msa0045440:CDS 55.0%
AGGGTCACTTCAACCCATCC+TGG + chr1_1:77384304-77384323 Msa0045440:intron 55.0%
TATCAGAGTCAGGGCCGTTC+CGG + chr1_1:77385002-77385021 Msa0045440:intron 55.0%
CAGGGCCGTTCCGGTAAAAT+CGG + chr1_1:77385011-77385030 Msa0045440:intron 55.0%
! GGCCTCCGATTTTACCGGAA+CGG - chr1_1:77385019-77385038 None:intergenic 55.0%
GGCATGTGCAAGGTGAGCTA+CGG - chr1_1:77385782-77385801 None:intergenic 55.0%
AGCTCACCTTGCACATGCCA+AGG + chr1_1:77385783-77385802 Msa0045440:intron 55.0%
GCTCACCTTGCACATGCCAA+GGG + chr1_1:77385784-77385803 Msa0045440:intron 55.0%
AGACGTACTCTGATCAGGCC+CGG - chr1_1:77385810-77385829 None:intergenic 55.0%
!! CTGTGGTGCCGGCAAATAGT+CGG + chr1_1:77385851-77385870 Msa0045440:intron 55.0%
AGGTGTACTTCGCAGATGGC+TGG + chr1_1:77386842-77386861 Msa0045440:CDS 55.0%
GGTGTACTTCGCAGATGGCT+GGG + chr1_1:77386843-77386862 Msa0045440:CDS 55.0%
! AGCAGCAGCAATTTCTGGGG+TGG - chr1_1:77386997-77387016 None:intergenic 55.0%
GTCAATTCAGTCCTCTCGGG+GGG - chr1_1:77387273-77387292 None:intergenic 55.0%
CACACGAGACACCTTCATCG+TGG - chr1_1:77387344-77387363 None:intergenic 55.0%
!! ACGGTGGGATGGTGGAGAAG+AGG - chr1_1:77382742-77382761 None:intergenic 60.0%
!! GATGATGGTGGACGGTGGGA+TGG - chr1_1:77382753-77382772 None:intergenic 60.0%
!! GATGGGATGATGGTGGACGG+TGG - chr1_1:77382758-77382777 None:intergenic 60.0%
!! GGGGATGGGATGATGGTGGA+CGG - chr1_1:77382761-77382780 None:intergenic 60.0%
! TGGTGGGGATGGGATGATGG+TGG - chr1_1:77382765-77382784 None:intergenic 60.0%
!! GGACGAGTGATGGTGGGGAT+GGG - chr1_1:77382775-77382794 None:intergenic 60.0%
!! AGGACGAGTGATGGTGGGGA+TGG - chr1_1:77382776-77382795 None:intergenic 60.0%
CAGGGCAGCAGATGCAGTAG+GGG + chr1_1:77382914-77382933 Msa0045440:five_prime_UTR 60.0%
AGGGCAGCAGATGCAGTAGG+GGG + chr1_1:77382915-77382934 Msa0045440:five_prime_UTR 60.0%
! CGTTGGCTGGTCCAATCGAC+AGG + chr1_1:77383382-77383401 Msa0045440:CDS 60.0%
CCTTCTGTTCGGGGTCCTTC+CGG + chr1_1:77384128-77384147 Msa0045440:CDS 60.0%
AAGGAGGTGGAGCTCGAAGC+CGG - chr1_1:77384150-77384169 None:intergenic 60.0%
GGCCGTTCCGGTAAAATCGG+AGG + chr1_1:77385014-77385033 Msa0045440:intron 60.0%
GCTCCTAAGATTGCGAGGCC+CGG + chr1_1:77385754-77385773 Msa0045440:intron 60.0%
TGCAAGGTGAGCTACGGTGC+CGG - chr1_1:77385776-77385795 None:intergenic 60.0%
ACCTTGCACATGCCAAGGGC+CGG + chr1_1:77385788-77385807 Msa0045440:intron 60.0%
TCTCGGGGGGAAATGCAGCT+TGG - chr1_1:77387260-77387279 None:intergenic 60.0%
AAGCTGCATTTCCCCCCGAG+AGG + chr1_1:77387259-77387278 Msa0045440:CDS 60.0%
!! GATGGTGGACGGTGGGATGG+TGG - chr1_1:77382750-77382769 None:intergenic 65.0%
CCGGAAGGACCCCGAACAGA+AGG - chr1_1:77384131-77384150 None:intergenic 65.0%
AGGTGGAGCTCGAAGCCGGA+AGG - chr1_1:77384146-77384165 None:intergenic 65.0%
GTGCCGGGCCTCGCAATCTT+AGG - chr1_1:77385760-77385779 None:intergenic 65.0%
GCAAGGTGAGCTACGGTGCC+GGG - chr1_1:77385775-77385794 None:intergenic 65.0%
CCTTGCACATGCCAAGGGCC+GGG + chr1_1:77385789-77385808 Msa0045440:intron 65.0%
! GTCTCAACGGTGACGGCGAG+CGG + chr1_1:77385826-77385845 Msa0045440:intron 65.0%
CCCGGCCCTTGGCATGTGCA+AGG - chr1_1:77385792-77385811 None:intergenic 70.0%
CTCTGATCAGGCCCGGCCCT+TGG - chr1_1:77385803-77385822 None:intergenic 70.0%
! GGTGACGGCGAGCGGTTCTG+TGG + chr1_1:77385834-77385853 Msa0045440:intron 70.0%
GGCGAGCGGTTCTGTGGTGC+CGG + chr1_1:77385840-77385859 Msa0045440:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 77382308 77387648 77382308 ID=Msa0045440;Name=Msa0045440
chr1_1 mRNA 77382308 77387648 77382308 ID=Msa0045440-mRNA-1;Parent=Msa0045440;Name=Msa0045440-mRNA-1;_AED=0.30;_eAED=0.30;_QI=803|0.33|0.57|1|0.16|0|7|277|243
chr1_1 exon 77382308 77382985 77382308 ID=Msa0045440-mRNA-1:exon:26365;Parent=Msa0045440-mRNA-1
chr1_1 exon 77383082 77383118 77383082 ID=Msa0045440-mRNA-1:exon:26366;Parent=Msa0045440-mRNA-1
chr1_1 exon 77383212 77383403 77383212 ID=Msa0045440-mRNA-1:exon:26367;Parent=Msa0045440-mRNA-1
chr1_1 exon 77384088 77384187 77384088 ID=Msa0045440-mRNA-1:exon:26368;Parent=Msa0045440-mRNA-1
chr1_1 exon 77386721 77386895 77386721 ID=Msa0045440-mRNA-1:exon:26369;Parent=Msa0045440-mRNA-1
chr1_1 exon 77386914 77387128 77386914 ID=Msa0045440-mRNA-1:exon:26370;Parent=Msa0045440-mRNA-1
chr1_1 exon 77387234 77387648 77387234 ID=Msa0045440-mRNA-1:exon:26371;Parent=Msa0045440-mRNA-1
chr1_1 five_prime_UTR 77382308 77382985 77382308 ID=Msa0045440-mRNA-1:five_prime_utr;Parent=Msa0045440-mRNA-1
chr1_1 five_prime_UTR 77383082 77383118 77383082 ID=Msa0045440-mRNA-1:five_prime_utr;Parent=Msa0045440-mRNA-1
chr1_1 five_prime_UTR 77383212 77383299 77383212 ID=Msa0045440-mRNA-1:five_prime_utr;Parent=Msa0045440-mRNA-1
chr1_1 CDS 77383300 77383403 77383300 ID=Msa0045440-mRNA-1:cds;Parent=Msa0045440-mRNA-1
chr1_1 CDS 77384088 77384187 77384088 ID=Msa0045440-mRNA-1:cds;Parent=Msa0045440-mRNA-1
chr1_1 CDS 77386721 77386895 77386721 ID=Msa0045440-mRNA-1:cds;Parent=Msa0045440-mRNA-1
chr1_1 CDS 77386914 77387128 77386914 ID=Msa0045440-mRNA-1:cds;Parent=Msa0045440-mRNA-1
chr1_1 CDS 77387234 77387371 77387234 ID=Msa0045440-mRNA-1:cds;Parent=Msa0045440-mRNA-1
chr1_1 three_prime_UTR 77387372 77387648 77387372 ID=Msa0045440-mRNA-1:three_prime_utr;Parent=Msa0045440-mRNA-1
Gene Sequence

>Msa0045440

ATGTGCAATAACAATTTCTCTGGTCAAAACTTTGATCGGCTGATGCCGCAAGCTATCAAAGTGATGCGGAAGTTGAAGATTCCGTTGGCTGGTCCAATCGACAGCGACAAACCATCATCTTGCCTGGGTTTAAAAACGGAGCTTCCTTCTGTTCGGGGTCCTTCCGGCTTCGAGCTCCACCTCCTTCGATTTGGTATCCTGTTGAAGAAGGGAAGACTACCAACATGCTTTCCTCGTGTGTTTGGCTTAGAAGTCGCACCTTTTGTTATGATACGTGATCCAAACTATAACGAGATTGAGGTTGCAGTTGAAAAGAAGGATGGAAAGGTGTACTTCGCAGATGGCTGGGAGATCATTCAGAGGTTTTACAAGATTTTTGTTGTATATGCAAACCGACATATCTTTCTTTTTGAGATCAGAAATATGCATGGCCAGGAGTTGGCCTATCCTCAATCCAATCCACCCCAGAAATTGCTGCTGCTAAATCAAAAGGATTCTGATTACAGAGACTCATTTATTCGGTATGGTTATAATGCTCATTTTCTACCCACAAAATTCTGCCATTTACTGGTGAAGGAGCTGAGTGATGCTGATAAACTAAATTGGCTTGGGTTCTGCCAAGCTGCATTTCCCCCCGAGAGGACTGAATTGACTGTTGTTGATTACCTTGGTTACACTTGGAAACTGACCATGAATTTCTGCCACGATGAAGGTGTCTCGTGTGTACTTTGA
Protein sequence

>Msa0045440

MCNNNFSGQNFDRLMPQAIKVMRKLKIPLAGPIDSDKPSSCLGLKTELPSVRGPSGFELHLLRFGILLKKGRLPTCFPRVFGLEVAPFVMIRDPNYNEIEVAVEKKDGKVYFADGWEIIQRFYKIFVVYANRHIFLFEIRNMHGQELAYPQSNPPQKLLLLNQKDSDYRDSFIRYGYNAHFLPTKFCHLLVKELSDADKLNWLGFCQAAFPPERTELTVVDYLGYTWKLTMNFCHDEGVSCVL*