AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0484480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0484480 MtrunA17_Chr7g0232921 52.632 171 50 2 69 233 56 201 7.65e-58 182
Msa0484480 MtrunA17_Chr6g0473661 34.483 174 92 4 70 233 256 417 4.25e-24 100
Msa0484480 MtrunA17_Chr4g0054601 45.361 97 47 1 83 173 1 97 1.48e-22 89.0
Msa0484480 MtrunA17_Chr8g0365871 69.767 43 13 0 199 241 14 56 2.55e-17 75.1
Msa0484480 MtrunA17_Chr4g0023021 70.455 44 13 0 199 242 5 48 8.40e-17 73.9
Msa0484480 MtrunA17_Chr6g0473651 38.043 92 51 1 70 155 225 316 2.62e-14 71.6
Msa0484480 MtrunA17_Chr1g0206471 27.586 174 112 3 73 234 55 226 5.05e-14 69.7
Msa0484480 MtrunA17_Chr8g0366201 63.636 44 15 1 200 243 4 46 5.90e-13 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 130 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGAAAATTTAATCAAAA+TGG 0.126041 3_4:-1852417 Msa0484480:exon
ATATATGAAAAGAATTATTT+TGG 0.144047 3_4:+1857466 None:intergenic
GATTTAGCAGCAGCAATTTC+TGG 0.190081 3_4:+1852784 None:intergenic
CACAAAATTCTGCCATTTAC+TGG 0.195427 3_4:-1852700 Msa0484480:CDS
TTAAGTGTTTCAGATGATTC+AGG 0.268064 3_4:-1856888 Msa0484480:five_prime_UTR
AACGGAGCTTCCTTCTGTTC+GGG 0.297220 3_4:-1855665 Msa0484480:CDS
TGGGAATGAGCGAAATCATT+TGG 0.305908 3_4:-1857158 Msa0484480:five_prime_UTR
ACCTCAATCTCGTTATAGTT+TGG 0.308204 3_4:+1852987 None:intergenic
AATCATTACATATCTTAAAA+AGG 0.325921 3_4:+1852258 None:intergenic
ATTATGAACAGAAACTAAAT+TGG 0.332960 3_4:-1852560 Msa0484480:intron
TCAGCTCCTTCACCAGTAAA+TGG 0.335075 3_4:+1852688 None:intergenic
TATCACTAGTGTAGTTAGAT+AGG 0.342979 3_4:+1857317 None:intergenic
CCTTCTGTTCGGGGTCCTTC+CGG 0.349284 3_4:-1855655 Msa0484480:CDS
ATATAATATTAGTTACATAT+TGG 0.350104 3_4:-1857441 Msa0484480:five_prime_UTR
ACATGCTTTCCTCGTGTGTT+TGG 0.352558 3_4:-1853044 Msa0484480:CDS
AACATACTCAGAGGAGAAAT+AGG 0.358919 3_4:+1856813 None:intergenic
AATGTGAGCTTTGGGTTTGC+AGG 0.368268 3_4:-1856686 Msa0484480:intron
ATTACAGAGACTCATTTATT+CGG 0.374753 3_4:-1852749 Msa0484480:CDS
CAGCAATTTCTGGGGTGGAT+TGG 0.378343 3_4:+1852794 None:intergenic
TTGATGGGAATGTGAGCTTT+GGG 0.379698 3_4:-1856694 Msa0484480:five_prime_UTR
GATGGGATGATGGTGGACGG+TGG 0.381501 3_4:+1857028 None:intergenic
GTTGATGGGAATGTGAGCTT+TGG 0.388955 3_4:-1856695 Msa0484480:five_prime_UTR
TTTGAAAATTTAATCAAAAT+GGG 0.393395 3_4:-1852416 Msa0484480:exon
AAACGGAGCTTCCTTCTGTT+CGG 0.393580 3_4:-1855666 Msa0484480:CDS
GAGCTCCACCTCCTTCGATT+TGG 0.397613 3_4:-1855628 Msa0484480:CDS
GGGAATGAGCGAAATCATTT+GGG 0.399175 3_4:-1857157 Msa0484480:five_prime_UTR
AGAAGAGGATGAAGGGTTGA+GGG 0.407229 3_4:+1857059 None:intergenic
AGGACGAGTGATGGTGGGGA+TGG 0.407732 3_4:+1857010 None:intergenic
TAACATGCGTAGGGGTAGTT+TGG 0.407889 3_4:-1857191 Msa0484480:intron
AGGAGAAGGACGAGTGATGG+TGG 0.408727 3_4:+1857004 None:intergenic
GAGAAGAGGATGAAGGGTTG+AGG 0.412381 3_4:+1857058 None:intergenic
ATTTAGCAGCAGCAATTTCT+GGG 0.416789 3_4:+1852785 None:intergenic
AACGTGAAGGGAATGAGAAA+AGG 0.417396 3_4:+1857102 None:intergenic
CGACAAACCATCATCTTGCC+TGG 0.423337 3_4:-1855695 Msa0484480:CDS
GAACAGAAACTAAATTGGCT+TGG 0.426932 3_4:-1852555 Msa0484480:intron
AACAGAAACTAAATTGGCTT+GGG 0.431232 3_4:-1852554 Msa0484480:intron
AGGTGTACTTCGCAGATGGC+TGG 0.432414 3_4:-1852941 Msa0484480:CDS
TGAGGTTGCAGTTGAAAAGA+AGG 0.432434 3_4:-1852970 Msa0484480:CDS
ACGTGAAGGGAATGAGAAAA+GGG 0.434277 3_4:+1857103 None:intergenic
CGCATCACTTTGATAGCTTG+CGG 0.446790 3_4:+1856438 None:intergenic
GATGGTGGACGGTGGGATGG+TGG 0.447094 3_4:+1857036 None:intergenic
TGATGGTGGGGATGGGATGA+TGG 0.455471 3_4:+1857018 None:intergenic
GAGAGGAGAAGGACGAGTGA+TGG 0.457120 3_4:+1857001 None:intergenic
ATGTGCAATAACAATTTCTC+TGG 0.462147 3_4:-1856483 Msa0484480:CDS
ATTGCTGCTGCTAAATCAAA+AGG 0.464828 3_4:-1852778 Msa0484480:CDS
TTCTGGGGTGGATTGGATTG+AGG 0.468292 3_4:+1852801 None:intergenic
GATGATGGTGGACGGTGGGA+TGG 0.477054 3_4:+1857033 None:intergenic
TTGATTACCTTGGTTACACT+TGG 0.481524 3_4:-1852485 Msa0484480:CDS
TTCATCGTGGCAGAAATTCA+TGG 0.481797 3_4:+1852455 None:intergenic
AACAGTCAATTCAGTCCTCT+CGG 0.482477 3_4:+1852509 None:intergenic
TCTCTGGTCAAAACTTTGAT+CGG 0.482615 3_4:-1856467 Msa0484480:CDS
ATGAATTTCTGCCACGATGA+AGG 0.482831 3_4:-1852453 Msa0484480:CDS
GGACGAGTGATGGTGGGGAT+GGG 0.482919 3_4:+1857011 None:intergenic
ATGGGATGATGGTGGACGGT+GGG 0.484034 3_4:+1857029 None:intergenic
CTAATGTATTTGTAGAAGAA+GGG 0.485098 3_4:-1853077 Msa0484480:intron
AGAGACTCATTTATTCGGTA+TGG 0.485190 3_4:-1852744 Msa0484480:CDS
AAAGGATTAAGCCTAAATTC+TGG 0.487160 3_4:+1852362 None:intergenic
ACAGTCAATTCAGTCCTCTC+GGG 0.488479 3_4:+1852510 None:intergenic
GGAGAAGGACGAGTGATGGT+GGG 0.488606 3_4:+1857005 None:intergenic
AAGTTGAAGATTCCGTTGGC+TGG 0.499507 3_4:-1856414 Msa0484480:CDS
GGATCACGTATCATAACAAA+AGG 0.502100 3_4:+1853008 None:intergenic
TTTAAACCCAGGCAAGATGA+TGG 0.504053 3_4:+1855688 None:intergenic
GAAGAGGATGAAGGGTTGAG+GGG 0.506570 3_4:+1857060 None:intergenic
AAAGTATGGAAGAGAGGAGA+AGG 0.507006 3_4:+1856990 None:intergenic
GATGGTGGAGAAGAGGATGA+AGG 0.507056 3_4:+1857051 None:intergenic
CCGGAAGGACCCCGAACAGA+AGG 0.510653 3_4:+1855655 None:intergenic
CCTTCGATTTGGTATCCTGT+TGG 0.512922 3_4:-1855617 Msa0484480:intron
TAAGTGTTTCAGATGATTCA+GGG 0.513198 3_4:-1856887 Msa0484480:five_prime_UTR
AAGGAGGTGGAGCTCGAAGC+CGG 0.513306 3_4:+1855636 None:intergenic
GGGGATGGGATGATGGTGGA+CGG 0.513477 3_4:+1857025 None:intergenic
TATCTAACTACACTAGTGAT+AGG 0.516941 3_4:-1857315 Msa0484480:five_prime_UTR
TGGTGGGGATGGGATGATGG+TGG 0.525480 3_4:+1857021 None:intergenic
ATTCTGCCATTTACTGGTGA+AGG 0.527022 3_4:-1852694 Msa0484480:CDS
CGTTGGCTGGTCCAATCGAC+AGG 0.527454 3_4:-1856401 Msa0484480:intron
GGTGTACTTCGCAGATGGCT+GGG 0.535542 3_4:-1852940 Msa0484480:CDS
AAATCATTTGGGTAAAGAGC+AGG 0.535966 3_4:-1857146 Msa0484480:five_prime_UTR
ATCACTAGTGTAGTTAGATA+GGG 0.545148 3_4:+1857318 None:intergenic
ACGGTGGGATGGTGGAGAAG+AGG 0.545601 3_4:+1857044 None:intergenic
TCAGGGCAGCAGATGCAGTA+GGG 0.546616 3_4:-1856870 Msa0484480:five_prime_UTR
TGAACGAACGAGTGGAATGA+CGG 0.547308 3_4:-1856537 Msa0484480:five_prime_UTR
AAATATGCATGGCCAGGAGT+TGG 0.548163 3_4:-1852829 Msa0484480:CDS
ATGGTGGAGAAGAGGATGAA+GGG 0.549645 3_4:+1857052 None:intergenic
GACAAACCATCATCTTGCCT+GGG 0.553812 3_4:-1855694 Msa0484480:CDS
AGACAGAGAGAGAACGTGAA+GGG 0.554062 3_4:+1857090 None:intergenic
ATTGAGGATAGGCCAACTCC+TGG 0.560143 3_4:+1852817 None:intergenic
AGCAGCAGCAATTTCTGGGG+TGG 0.560422 3_4:+1852789 None:intergenic
GATCAGAAATATGCATGGCC+AGG 0.562033 3_4:-1852835 Msa0484480:CDS
GAGAAGGACGAGTGATGGTG+GGG 0.568649 3_4:+1857006 None:intergenic
TTGACTGTTGTTGATTACCT+TGG 0.569833 3_4:-1852495 Msa0484480:CDS
GGATACCAAATCGAAGGAGG+TGG 0.573334 3_4:+1855623 None:intergenic
CAAGTTAACTTGCGTAACGC+AGG 0.577286 3_4:-1857234 Msa0484480:five_prime_UTR
AGGTCGTCGTACCTGTCGAT+TGG 0.577304 3_4:+1856390 None:intergenic
ACTCAGAGGAGAAATAGGAT+TGG 0.577314 3_4:+1856818 None:intergenic
TTTGAGATCAGAAATATGCA+TGG 0.581381 3_4:-1852840 Msa0484480:CDS
GTTGCAGTTGAAAAGAAGGA+TGG 0.584869 3_4:-1852966 Msa0484480:CDS
TCCAAACTATAACGAGATTG+AGG 0.593219 3_4:-1852988 Msa0484480:CDS
ACACTAGTGATAGGTCATGA+TGG 0.604326 3_4:-1857306 Msa0484480:five_prime_UTR
ACGGAGCTTCCTTCTGTTCG+GGG 0.605518 3_4:-1855664 Msa0484480:CDS
AAGACAGAGAGAGAACGTGA+AGG 0.606328 3_4:+1857089 None:intergenic
GGAAAGGTGTACTTCGCAGA+TGG 0.607746 3_4:-1852945 Msa0484480:CDS
CAGGGCAGCAGATGCAGTAG+GGG 0.608264 3_4:-1856869 Msa0484480:five_prime_UTR
GGGTGGATTGGATTGAGGAT+AGG 0.609663 3_4:+1852806 None:intergenic
CTGTCGATTGGACCAGCCAA+CGG 0.616730 3_4:+1856402 None:intergenic
AGGTGGAGCTCGAAGCCGGA+AGG 0.617798 3_4:+1855640 None:intergenic
GCTTGAACAAAGGTGAAACA+TGG 0.618233 3_4:-1856566 Msa0484480:five_prime_UTR
CAGTCAATTCAGTCCTCTCG+GGG 0.621421 3_4:+1852511 None:intergenic
ATTGCAACGGAAATGAGTAC+AGG 0.621467 3_4:+1852286 None:intergenic
TTCAGGGCAGCAGATGCAGT+AGG 0.631594 3_4:-1856871 Msa0484480:five_prime_UTR
GCGGAAGTTGAAGATTCCGT+TGG 0.632664 3_4:-1856418 Msa0484480:CDS
AGTTGAAAAGAAGGATGGAA+AGG 0.635830 3_4:-1852961 Msa0484480:CDS
AACACACGAGGAAAGCATGT+TGG 0.637782 3_4:+1853047 None:intergenic
CCAACAGGATACCAAATCGA+AGG 0.639694 3_4:+1855617 None:intergenic
GGAGGAAATGAACGAACGAG+TGG 0.640086 3_4:-1856545 Msa0484480:five_prime_UTR
TCAGTTTCCAAGTGTAACCA+AGG 0.644121 3_4:+1852478 None:intergenic
GTCAATTCAGTCCTCTCGGG+GGG 0.645033 3_4:+1852513 None:intergenic
AGGGCAGCAGATGCAGTAGG+GGG 0.647544 3_4:-1856868 Msa0484480:five_prime_UTR
CGCAAGCTATCAAAGTGATG+CGG 0.649386 3_4:-1856437 Msa0484480:CDS
TGAAGTCGATGCTTGAACAA+AGG 0.658666 3_4:-1856576 Msa0484480:intron
CGTGAAGGGAATGAGAAAAG+GGG 0.671933 3_4:+1857104 None:intergenic
GTGAAGGGAATGAGAAAAGG+GGG 0.673980 3_4:+1857105 None:intergenic
TTTAGCAGCAGCAATTTCTG+GGG 0.674457 3_4:+1852786 None:intergenic
ACAGGATACCAAATCGAAGG+AGG 0.685005 3_4:+1855620 None:intergenic
ACATAGAATTGAGAAAACAA+AGG 0.685483 3_4:+1852344 None:intergenic
ACTTCTAAGCCAAACACACG+AGG 0.689309 3_4:+1853035 None:intergenic
AGTCAATTCAGTCCTCTCGG+GGG 0.695605 3_4:+1852512 None:intergenic
TGAACAAAGGTGAAACATGG+AGG 0.698848 3_4:-1856563 Msa0484480:five_prime_UTR
ATGGCTGGGAGATCATTCAG+AGG 0.704131 3_4:-1852926 Msa0484480:CDS
GTAGCGTGACTTAAGTCACG+TGG 0.717771 3_4:+1857258 None:intergenic
CACACGAGACACCTTCATCG+TGG 0.729627 3_4:+1852442 None:intergenic
GACTGCAGCTTACAACACAT+AGG 0.734195 3_4:+1852308 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATGAAAAGAATTATTT+TGG + chr3_4:1852169-1852188 None:intergenic 10.0%
!! ATATAATATTAGTTACATAT+TGG - chr3_4:1852191-1852210 Msa0484480:three_prime_UTR 10.0%
!!! TATTATAGAAATTTTCAAAT+TGG - chr3_4:1853328-1853347 Msa0484480:intron 10.0%
!!! ATTATAGAAATTTTCAAATT+GGG - chr3_4:1853329-1853348 Msa0484480:intron 10.0%
!!! TATATTTAAGATCATTTTAT+TGG - chr3_4:1856314-1856333 Msa0484480:intron 10.0%
!! TTTGAAAATTTAATCAAAAT+GGG - chr3_4:1857216-1857235 Msa0484480:intron 10.0%
!!! TTGTGTAATTTTGATATTTA+TGG + chr3_4:1852217-1852236 None:intergenic 15.0%
!! GAAATTGAAAAAAAAAAGTA+TGG + chr3_4:1852659-1852678 None:intergenic 15.0%
!!! CAAATTTATTGAGATTTTTA+GGG + chr3_4:1852721-1852740 None:intergenic 15.0%
!! AATCATTTCATCATTTAAAA+AGG + chr3_4:1853006-1853025 None:intergenic 15.0%
!!! TTATAGAAATTTTCAAATTG+GGG - chr3_4:1853330-1853349 Msa0484480:intron 15.0%
!!! TTTTACCACTAATAATATAA+AGG + chr3_4:1853569-1853588 None:intergenic 15.0%
!!! TTTTAAACAAAAATCAGAAA+TGG + chr3_4:1854213-1854232 None:intergenic 15.0%
!! TAAAATTTAAATTTCGTTTC+TGG - chr3_4:1854228-1854247 Msa0484480:intron 15.0%
!! TTGAATTTAAAGATTGTATA+AGG + chr3_4:1854814-1854833 None:intergenic 15.0%
!! TTTAATATTAAAACAATTGG+TGG + chr3_4:1855052-1855071 None:intergenic 15.0%
!! TGATAAACTAATACTAATAT+CGG - chr3_4:1855205-1855224 Msa0484480:intron 15.0%
!!! AAATGCATTTTAAATTGTAA+TGG - chr3_4:1855382-1855401 Msa0484480:intron 15.0%
!! AAGATAAAAAAAAGATGAAA+GGG + chr3_4:1855956-1855975 None:intergenic 15.0%
!! AAAGATAAAAAAAAGATGAA+AGG + chr3_4:1855957-1855976 None:intergenic 15.0%
!! AATTATAGTTTCAGTAAATA+TGG - chr3_4:1856079-1856098 Msa0484480:intron 15.0%
!!! TTTATATTGATTTAGTTAGT+TGG + chr3_4:1856192-1856211 None:intergenic 15.0%
!! CTAAATCAATATAAATCTTA+AGG - chr3_4:1856197-1856216 Msa0484480:intron 15.0%
!!! TTTTTTGATGTTATTTGTTT+TGG - chr3_4:1856458-1856477 Msa0484480:CDS 15.0%
!!! CTTTGAAAATTTAATCAAAA+TGG - chr3_4:1857215-1857234 Msa0484480:intron 15.0%
!! AATCATTACATATCTTAAAA+AGG + chr3_4:1857377-1857396 None:intergenic 15.0%
!!! TGAAAAACTAATTTTTGAAA+AGG + chr3_4:1857447-1857466 None:intergenic 15.0%
!!! CCAAATTTATTGAGATTTTT+AGG + chr3_4:1852722-1852741 None:intergenic 20.0%
!! CCTAAAAATCTCAATAAATT+TGG - chr3_4:1852719-1852738 Msa0484480:CDS 20.0%
!!! AATTTATAGACTTTTGTTGA+TGG - chr3_4:1852922-1852941 Msa0484480:CDS 20.0%
!!! ATTTATAGACTTTTGTTGAT+GGG - chr3_4:1852923-1852942 Msa0484480:CDS 20.0%
!! TTCATCATTTAAAAAGGTTA+AGG + chr3_4:1853000-1853019 None:intergenic 20.0%
!! ATAATTGTTGTCCATATAAT+TGG - chr3_4:1853280-1853299 Msa0484480:intron 20.0%
!!! TATAGAAATTTTCAAATTGG+GGG - chr3_4:1853331-1853350 Msa0484480:intron 20.0%
!!! GTTTTCCTTTATATTATTAG+TGG - chr3_4:1853561-1853580 Msa0484480:intron 20.0%
!!! TGTGTTTCTTTTGATTTTTT+TGG - chr3_4:1854627-1854646 Msa0484480:intron 20.0%
!! ATTTAAAGATTGTATAAGGA+AGG + chr3_4:1854810-1854829 None:intergenic 20.0%
!! CATGTTCAAATGTTAAAAAT+GGG - chr3_4:1854887-1854906 Msa0484480:intron 20.0%
!!! AAAAATCTTGTTTTTCCATA+GGG + chr3_4:1854914-1854933 None:intergenic 20.0%
!!! AAAAAATCTTGTTTTTCCAT+AGG + chr3_4:1854915-1854934 None:intergenic 20.0%
!! TAAGTAAAAGTAAGTTTGTA+TGG - chr3_4:1854992-1855011 Msa0484480:intron 20.0%
!! AAGTAAAAGTAAGTTTGTAT+GGG - chr3_4:1854993-1855012 Msa0484480:intron 20.0%
!!! GATGATTCTTTTTAAGTTTT+TGG + chr3_4:1855108-1855127 None:intergenic 20.0%
!!! GATTTAATTTGCATTGTTAA+TGG - chr3_4:1855300-1855319 Msa0484480:intron 20.0%
!!! GTAATTGAGACTTTTATATT+TGG - chr3_4:1855421-1855440 Msa0484480:intron 20.0%
!! AAAAAAATCAATAGACATCT+TGG + chr3_4:1855525-1855544 None:intergenic 20.0%
!!! ATTTTGATTTAGTTATCAGT+TGG + chr3_4:1856112-1856131 None:intergenic 20.0%
!! ATCAATATAAATCTTAAGGA+AGG - chr3_4:1856201-1856220 Msa0484480:intron 20.0%
!! TGAAACTATACTATATTTGT+TGG - chr3_4:1856400-1856419 Msa0484480:intron 20.0%
!! ATTATGAACAGAAACTAAAT+TGG - chr3_4:1857072-1857091 Msa0484480:five_prime_UTR 20.0%
!! GTAGTTTGGTATTTTACTTT+GGG - chr3_4:1852455-1852474 Msa0484480:CDS 25.0%
!! AAAAAAAAAGTATGGAAGAG+AGG + chr3_4:1852651-1852670 None:intergenic 25.0%
! AAAAAAAAAACTCAGATCCA+TGG + chr3_4:1852854-1852873 None:intergenic 25.0%
! CAGTTGTAAAAACAAATTTG+TGG + chr3_4:1852883-1852902 None:intergenic 25.0%
! AAGAAGAAAACAGTATCATT+AGG + chr3_4:1853031-1853050 None:intergenic 25.0%
!!! ATTATCTTGATTTTGGAAGA+AGG + chr3_4:1853265-1853284 None:intergenic 25.0%
!! GACAACAATTATCTTGATTT+TGG + chr3_4:1853272-1853291 None:intergenic 25.0%
!! ATAGAAATTTTCAAATTGGG+GGG - chr3_4:1853332-1853351 Msa0484480:intron 25.0%
! AGCAAGAACATTTGTTTAAT+TGG - chr3_4:1853365-1853384 Msa0484480:intron 25.0%
!! TCTAGAACATATAAAAGAGA+TGG + chr3_4:1853449-1853468 None:intergenic 25.0%
!!! TCTCTTTTATATGTTCTAGA+AGG - chr3_4:1853449-1853468 Msa0484480:intron 25.0%
! TATATTCACTTCTATCAGTT+GGG + chr3_4:1853645-1853664 None:intergenic 25.0%
! TTATATTCACTTCTATCAGT+TGG + chr3_4:1853646-1853665 None:intergenic 25.0%
! ACTGATAGAAGTGAATATAA+TGG - chr3_4:1853646-1853665 Msa0484480:intron 25.0%
! CTGATAGAAGTGAATATAAT+GGG - chr3_4:1853647-1853666 Msa0484480:intron 25.0%
! ATGGGATATTCAATCAATAT+CGG - chr3_4:1853665-1853684 Msa0484480:intron 25.0%
!! CAGGTTCACATAAATTTTTA+AGG - chr3_4:1853790-1853809 Msa0484480:intron 25.0%
! GGAAAATGAAGATGATTTAT+GGG + chr3_4:1853877-1853896 None:intergenic 25.0%
!!! TCTGGATTTTTAGTAAGATT+TGG - chr3_4:1854246-1854265 Msa0484480:intron 25.0%
!!! TTAGTAAGATTTGGTGAATT+TGG - chr3_4:1854255-1854274 Msa0484480:intron 25.0%
! AACTCAATCAAACTTAAAGA+TGG + chr3_4:1854486-1854505 None:intergenic 25.0%
! AATGTATTGTCTTACGTATT+AGG - chr3_4:1854724-1854743 Msa0484480:intron 25.0%
!!! ATGACTCTGAAATTTTGAAA+TGG - chr3_4:1854754-1854773 Msa0484480:intron 25.0%
!!! CCATTTTTAACATTTGAACA+TGG + chr3_4:1854889-1854908 None:intergenic 25.0%
! CCATGTTCAAATGTTAAAAA+TGG - chr3_4:1854886-1854905 Msa0484480:intron 25.0%
!!! AAAATCTTGTTTTTCCATAG+GGG + chr3_4:1854913-1854932 None:intergenic 25.0%
!!! TCATTTTGTTTAGTGCAAAA+TGG - chr3_4:1855126-1855145 Msa0484480:intron 25.0%
!!! CATTTTGTTTAGTGCAAAAT+GGG - chr3_4:1855127-1855146 Msa0484480:intron 25.0%
!! AATATAACACTCAAAAGTGT+TGG + chr3_4:1855565-1855584 None:intergenic 25.0%
!! ATAGTTTCTAAAAGCCATAT+TGG + chr3_4:1855831-1855850 None:intergenic 25.0%
!!! ATATGGCTTTTAGAAACTAT+TGG - chr3_4:1855831-1855850 Msa0484480:intron 25.0%
!!! TATGTTATTTTGTCTAGCTA+AGG - chr3_4:1855981-1856000 Msa0484480:intron 25.0%
! ATTGTCATCATTTATTGCAA+TGG + chr3_4:1856229-1856248 None:intergenic 25.0%
! ATTGCAATAAATGATGACAA+TGG - chr3_4:1856228-1856247 Msa0484480:intron 25.0%
! TTGAACTATATATGCTTTGA+TGG - chr3_4:1856355-1856374 Msa0484480:intron 25.0%
!! GTTACAATGTGTTTTCAATA+TGG - chr3_4:1856428-1856447 Msa0484480:CDS 25.0%
! TCTAATGTATTTGTAGAAGA+AGG - chr3_4:1856554-1856573 Msa0484480:five_prime_UTR 25.0%
! CTAATGTATTTGTAGAAGAA+GGG - chr3_4:1856555-1856574 Msa0484480:five_prime_UTR 25.0%
! TCTCAAAAAGAAAGATATGT+CGG + chr3_4:1856779-1856798 None:intergenic 25.0%
! ATTACAGAGACTCATTTATT+CGG - chr3_4:1856883-1856902 Msa0484480:five_prime_UTR 25.0%
! TCGTATTTACTTATGACATT+TGG - chr3_4:1857031-1857050 Msa0484480:five_prime_UTR 25.0%
! ACATAGAATTGAGAAAACAA+AGG + chr3_4:1857291-1857310 None:intergenic 25.0%
!! TTTTCTCAATTCTATGTGTT+TGG - chr3_4:1857294-1857313 Msa0484480:five_prime_UTR 25.0%
! TAAAAAGGAAGAAATTGCAA+CGG + chr3_4:1857362-1857381 None:intergenic 25.0%
TAGACCACCAAAAAATATGT+CGG - chr3_4:1852237-1852256 Msa0484480:three_prime_UTR 30.0%
GTGTAATACCACCAAAAAAT+AGG - chr3_4:1852261-1852280 Msa0484480:three_prime_UTR 30.0%
! AGATAGGGTATGACATTTTT+GGG + chr3_4:1852302-1852321 None:intergenic 30.0%
! TAGATAGGGTATGACATTTT+TGG + chr3_4:1852303-1852322 None:intergenic 30.0%
ATCACTAGTGTAGTTAGATA+GGG + chr3_4:1852317-1852336 None:intergenic 30.0%
TATCACTAGTGTAGTTAGAT+AGG + chr3_4:1852318-1852337 None:intergenic 30.0%
TATCTAACTACACTAGTGAT+AGG - chr3_4:1852317-1852336 Msa0484480:three_prime_UTR 30.0%
! GGTAGTTTGGTATTTTACTT+TGG - chr3_4:1852454-1852473 Msa0484480:CDS 30.0%
TTAAGTGTTTCAGATGATTC+AGG - chr3_4:1852744-1852763 Msa0484480:CDS 30.0%
TAAGTGTTTCAGATGATTCA+GGG - chr3_4:1852745-1852764 Msa0484480:CDS 30.0%
AAACTCATAAACATACTCAG+AGG + chr3_4:1852831-1852850 None:intergenic 30.0%
AGTATGTTTATGAGTTTCCA+TGG - chr3_4:1852834-1852853 Msa0484480:CDS 30.0%
ATGTGCAATAACAATTTCTC+TGG - chr3_4:1853149-1853168 Msa0484480:intron 30.0%
TAAAATACTGACCTCATAGA+AGG + chr3_4:1853525-1853544 None:intergenic 30.0%
ATTTATGTGAACCTGCTAAT+AGG + chr3_4:1853785-1853804 None:intergenic 30.0%
AAGATGATTTATGGGAAGAT+GGG + chr3_4:1853869-1853888 None:intergenic 30.0%
GGGAAAATGAAGATGATTTA+TGG + chr3_4:1853878-1853897 None:intergenic 30.0%
CAGATTTGAAGATGGTTTAT+GGG + chr3_4:1853898-1853917 None:intergenic 30.0%
TCAGATTTGAAGATGGTTTA+TGG + chr3_4:1853899-1853918 None:intergenic 30.0%
! TTTGAGATCAGATTTGAAGA+TGG + chr3_4:1853906-1853925 None:intergenic 30.0%
TGAAAACTGATGTGATCAAA+AGG - chr3_4:1854062-1854081 Msa0484480:intron 30.0%
!! ATGATGTTTTTAACAGTGAC+TGG - chr3_4:1854109-1854128 Msa0484480:intron 30.0%
TATTGTAAACTACACATACC+AGG + chr3_4:1854174-1854193 None:intergenic 30.0%
! TGAAACTTGTCTTTTCCTTT+TGG + chr3_4:1854360-1854379 None:intergenic 30.0%
GTATTATGCTTATAGTTAGC+AGG - chr3_4:1854432-1854451 Msa0484480:intron 30.0%
CAAAAGAAACACATGTTTAC+AGG + chr3_4:1854620-1854639 None:intergenic 30.0%
TTGAAATGGATGTCTACATT+TGG - chr3_4:1854768-1854787 Msa0484480:intron 30.0%
AAAAGTAAGTTTGTATGGGA+AGG - chr3_4:1854997-1855016 Msa0484480:intron 30.0%
CAATTACATACACAACTACT+AGG + chr3_4:1855408-1855427 None:intergenic 30.0%
!! GAAAACTGTTGATTCAATCA+TGG + chr3_4:1855911-1855930 None:intergenic 30.0%
! ATGACAATGGTAAAGCTTTT+TGG - chr3_4:1856241-1856260 Msa0484480:intron 30.0%
TTATAGTACCTATATGTCGT+AGG + chr3_4:1856289-1856308 None:intergenic 30.0%
! CAGAGGTTTTACAAGATTTT+TGG - chr3_4:1856723-1856742 Msa0484480:intron 30.0%
!!! ACAAGATTTTTGGTTGTACT+TGG - chr3_4:1856733-1856752 Msa0484480:intron 30.0%
! TTTGAGATCAGAAATATGCA+TGG - chr3_4:1856792-1856811 Msa0484480:intron 30.0%
! AGTAAATGGCAGAATTTTGT+GGG + chr3_4:1856933-1856952 None:intergenic 30.0%
! AACAGAAACTAAATTGGCTT+GGG - chr3_4:1857078-1857097 Msa0484480:five_prime_UTR 30.0%
! TGAGATTTTCTCCAGAATTT+AGG - chr3_4:1857259-1857278 Msa0484480:five_prime_UTR 30.0%
AAAGGATTAAGCCTAAATTC+TGG + chr3_4:1857273-1857292 None:intergenic 30.0%
AGACCACCAAAAAATATGTC+GGG - chr3_4:1852238-1852257 Msa0484480:three_prime_UTR 35.0%
!!! TTACACCCCGACATATTTTT+TGG + chr3_4:1852247-1852266 None:intergenic 35.0%
AAATCATTTGGGTAAAGAGC+AGG - chr3_4:1852486-1852505 Msa0484480:CDS 35.0%
AACATACTCAGAGGAGAAAT+AGG + chr3_4:1852822-1852841 None:intergenic 35.0%
TCTCTGGTCAAAACTTTGAT+CGG - chr3_4:1853165-1853184 Msa0484480:intron 35.0%
TTGTCCATATAATTGGTGTG+TGG - chr3_4:1853287-1853306 Msa0484480:intron 35.0%
CAAACCACACACCAATTATA+TGG + chr3_4:1853294-1853313 None:intergenic 35.0%
CATATAATTGGTGTGTGGTT+TGG - chr3_4:1853292-1853311 Msa0484480:intron 35.0%
! AAATTTTCAAATTGGGGGGT+TGG - chr3_4:1853336-1853355 Msa0484480:intron 35.0%
GAAGATGATTTATGGGAAGA+TGG + chr3_4:1853870-1853889 None:intergenic 35.0%
ATCTTGCCTGGGTTTAAAAA+CGG - chr3_4:1853949-1853968 Msa0484480:intron 35.0%
CAAAAGGATTGTAGTTTCGA+TGG - chr3_4:1854078-1854097 Msa0484480:intron 35.0%
TAAACTACACATACCAGGAT+GGG + chr3_4:1854169-1854188 None:intergenic 35.0%
! CTTTTGGCATAAAGCTGAAT+CGG + chr3_4:1854344-1854363 None:intergenic 35.0%
! ACAAAATATCTAGCTCGAAG+AGG + chr3_4:1854663-1854682 None:intergenic 35.0%
TGAAGCATAAAAGCAGTGTT+GGG + chr3_4:1854699-1854718 None:intergenic 35.0%
TTGAAGCATAAAAGCAGTGT+TGG + chr3_4:1854700-1854719 None:intergenic 35.0%
TCATCTCATTATCAGAGTCA+GGG - chr3_4:1854842-1854861 Msa0484480:intron 35.0%
ATAGAATGCACTTGAGTCAT+CGG + chr3_4:1855485-1855504 None:intergenic 35.0%
GATTAAAAGCCTTGAAGAGA+TGG - chr3_4:1855775-1855794 Msa0484480:intron 35.0%
TCTTTAACTCCATCTCTTCA+AGG + chr3_4:1855787-1855806 None:intergenic 35.0%
GATTGAACAACATCATGTCA+TGG - chr3_4:1855855-1855874 Msa0484480:intron 35.0%
!! AACTGTTGATTCAATCATGG+AGG + chr3_4:1855908-1855927 None:intergenic 35.0%
TTTGTCTAGCTAAGGCAATT+AGG - chr3_4:1855989-1856008 Msa0484480:intron 35.0%
ATTAGGAGAGGAGTAATATG+TGG - chr3_4:1856006-1856025 Msa0484480:intron 35.0%
GTTTGACACCACTAATATAC+AGG - chr3_4:1856162-1856181 Msa0484480:intron 35.0%
TTGGTTCACCTGTATATTAG+TGG + chr3_4:1856173-1856192 None:intergenic 35.0%
! ACAATGGTAAAGCTTTTTGG+AGG - chr3_4:1856244-1856263 Msa0484480:intron 35.0%
CAATAACACCTACGACATAT+AGG - chr3_4:1856278-1856297 Msa0484480:intron 35.0%
GGATCACGTATCATAACAAA+AGG + chr3_4:1856627-1856646 None:intergenic 35.0%
TCCAAACTATAACGAGATTG+AGG - chr3_4:1856644-1856663 Msa0484480:intron 35.0%
ACCTCAATCTCGTTATAGTT+TGG + chr3_4:1856648-1856667 None:intergenic 35.0%
AGTTGAAAAGAAGGATGGAA+AGG - chr3_4:1856671-1856690 Msa0484480:intron 35.0%
ATTTAGCAGCAGCAATTTCT+GGG + chr3_4:1856850-1856869 None:intergenic 35.0%
ATTGCTGCTGCTAAATCAAA+AGG - chr3_4:1856854-1856873 Msa0484480:five_prime_UTR 35.0%
AGAGACTCATTTATTCGGTA+TGG - chr3_4:1856888-1856907 Msa0484480:five_prime_UTR 35.0%
! CAGTAAATGGCAGAATTTTG+TGG + chr3_4:1856934-1856953 None:intergenic 35.0%
! CACAAAATTCTGCCATTTAC+TGG - chr3_4:1856932-1856951 Msa0484480:five_prime_UTR 35.0%
GTTAATTACCACAAAGATGC+TGG - chr3_4:1856978-1856997 Msa0484480:five_prime_UTR 35.0%
GAACAGAAACTAAATTGGCT+TGG - chr3_4:1857077-1857096 Msa0484480:five_prime_UTR 35.0%
! TTGACTGTTGTTGATTACCT+TGG - chr3_4:1857137-1857156 Msa0484480:five_prime_UTR 35.0%
TTGATTACCTTGGTTACACT+TGG - chr3_4:1857147-1857166 Msa0484480:five_prime_UTR 35.0%
GACCACCAAAAAATATGTCG+GGG - chr3_4:1852239-1852258 Msa0484480:three_prime_UTR 40.0%
!!! GTGTTCGTCCTATTTTTTGG+TGG + chr3_4:1852272-1852291 None:intergenic 40.0%
!!! TGGGTGTTCGTCCTATTTTT+TGG + chr3_4:1852275-1852294 None:intergenic 40.0%
!!! TATGACATTTTTGGGTCGGT+GGG + chr3_4:1852294-1852313 None:intergenic 40.0%
!!! AGGGTATGACATTTTTGGGT+CGG + chr3_4:1852298-1852317 None:intergenic 40.0%
ACACTAGTGATAGGTCATGA+TGG - chr3_4:1852326-1852345 Msa0484480:three_prime_UTR 40.0%
TAACGCATGTTAACATGCGT+AGG - chr3_4:1852431-1852450 Msa0484480:exon 40.0%
AACGCATGTTAACATGCGTA+GGG - chr3_4:1852432-1852451 Msa0484480:exon 40.0%
TGGGAATGAGCGAAATCATT+TGG - chr3_4:1852474-1852493 Msa0484480:CDS 40.0%
GGGAATGAGCGAAATCATTT+GGG - chr3_4:1852475-1852494 Msa0484480:CDS 40.0%
AGAAAAGGGGGACTAAAATG+AGG + chr3_4:1852518-1852537 None:intergenic 40.0%
ACGTGAAGGGAATGAGAAAA+GGG + chr3_4:1852532-1852551 None:intergenic 40.0%
AACGTGAAGGGAATGAGAAA+AGG + chr3_4:1852533-1852552 None:intergenic 40.0%
AAAGTATGGAAGAGAGGAGA+AGG + chr3_4:1852645-1852664 None:intergenic 40.0%
ACTCAGAGGAGAAATAGGAT+TGG + chr3_4:1852817-1852836 None:intergenic 40.0%
TTGATGGGAATGTGAGCTTT+GGG - chr3_4:1852938-1852957 Msa0484480:CDS 40.0%
TGAAGTCGATGCTTGAACAA+AGG - chr3_4:1853056-1853075 Msa0484480:CDS 40.0%
GCTTGAACAAAGGTGAAACA+TGG - chr3_4:1853066-1853085 Msa0484480:intron 40.0%
TGAACAAAGGTGAAACATGG+AGG - chr3_4:1853069-1853088 Msa0484480:intron 40.0%
!! ACGGATTTGATTTTGACGCA+AGG - chr3_4:1853114-1853133 Msa0484480:intron 40.0%
!! CGGATTTGATTTTGACGCAA+GGG - chr3_4:1853115-1853134 Msa0484480:intron 40.0%
!! GGATTTGATTTTGACGCAAG+GGG - chr3_4:1853116-1853135 Msa0484480:intron 40.0%
TAGAAGGTTTATGCAGCAGT+TGG - chr3_4:1853465-1853484 Msa0484480:intron 40.0%
AGAAGGTTTATGCAGCAGTT+GGG - chr3_4:1853466-1853485 Msa0484480:intron 40.0%
!!! TTGTTTTAGCGCCTTCTATG+AGG - chr3_4:1853511-1853530 Msa0484480:intron 40.0%
TACTTTCAGTCTCCGTTAAG+TGG - chr3_4:1853703-1853722 Msa0484480:intron 40.0%
ACTTTCAGTCTCCGTTAAGT+GGG - chr3_4:1853704-1853723 Msa0484480:intron 40.0%
CCAAGCAGCAAAATCACATA+AGG + chr3_4:1853749-1853768 None:intergenic 40.0%
! CCTTATGTGATTTTGCTGCT+TGG - chr3_4:1853746-1853765 Msa0484480:intron 40.0%
!! TTTTGCTGCTTGGAGTTTTG+TGG - chr3_4:1853756-1853775 Msa0484480:intron 40.0%
! TTTTGTGGTTGCCTATTAGC+AGG - chr3_4:1853771-1853790 Msa0484480:intron 40.0%
TTTAAACCCAGGCAAGATGA+TGG + chr3_4:1853947-1853966 None:intergenic 40.0%
TAACAGTGACTGGTGTTTAG+CGG - chr3_4:1854119-1854138 Msa0484480:intron 40.0%
GTAAACTACACATACCAGGA+TGG + chr3_4:1854170-1854189 None:intergenic 40.0%
! CGATTCAGCTTTATGCCAAA+AGG - chr3_4:1854342-1854361 Msa0484480:intron 40.0%
TATGCTTATAGTTAGCAGGC+AGG - chr3_4:1854436-1854455 Msa0484480:intron 40.0%
! ATATCTAGCTCGAAGAGGAT+AGG + chr3_4:1854658-1854677 None:intergenic 40.0%
! AAAGCAGTGTTGGGCAAAAT+GGG + chr3_4:1854690-1854709 None:intergenic 40.0%
! AAAAGCAGTGTTGGGCAAAA+TGG + chr3_4:1854691-1854710 None:intergenic 40.0%
CTCATCTCATTATCAGAGTC+AGG - chr3_4:1854841-1854860 Msa0484480:intron 40.0%
ATGTTAAAAATGGGCCCCTA+TGG - chr3_4:1854896-1854915 Msa0484480:intron 40.0%
CTTGGAATTCATATCCTCGT+TGG + chr3_4:1855739-1855758 None:intergenic 40.0%
ACGAGGATATGAATTCCAAG+AGG - chr3_4:1855739-1855758 Msa0484480:intron 40.0%
! CTTTGTCGACTACACCAATA+TGG - chr3_4:1855814-1855833 Msa0484480:intron 40.0%
GTCATGGCTCAAATTCAATC+TGG - chr3_4:1855871-1855890 Msa0484480:intron 40.0%
AAAAGATGAAAGGGACTCAC+AGG + chr3_4:1855947-1855966 None:intergenic 40.0%
!! TAAAGCTTTTTGGAGGAAGC+AGG - chr3_4:1856251-1856270 Msa0484480:intron 40.0%
GTGTTGCATGCAGAAAGAAA+TGG - chr3_4:1856492-1856511 Msa0484480:exon 40.0%
TGAGGTTGCAGTTGAAAAGA+AGG - chr3_4:1856662-1856681 Msa0484480:intron 40.0%
GTTGCAGTTGAAAAGAAGGA+TGG - chr3_4:1856666-1856685 Msa0484480:intron 40.0%
TTTAGCAGCAGCAATTTCTG+GGG + chr3_4:1856849-1856868 None:intergenic 40.0%
GATTTAGCAGCAGCAATTTC+TGG + chr3_4:1856851-1856870 None:intergenic 40.0%
! ATTCTGCCATTTACTGGTGA+AGG - chr3_4:1856938-1856957 Msa0484480:five_prime_UTR 40.0%
AACAGTCAATTCAGTCCTCT+CGG + chr3_4:1857126-1857145 None:intergenic 40.0%
TCAGTTTCCAAGTGTAACCA+AGG + chr3_4:1857157-1857176 None:intergenic 40.0%
TTCATCGTGGCAGAAATTCA+TGG + chr3_4:1857180-1857199 None:intergenic 40.0%
ATGAATTTCTGCCACGATGA+AGG - chr3_4:1857179-1857198 Msa0484480:five_prime_UTR 40.0%
ATTGCAACGGAAATGAGTAC+AGG + chr3_4:1857349-1857368 None:intergenic 40.0%
!!! CACCCCGACATATTTTTTGG+TGG + chr3_4:1852244-1852263 None:intergenic 45.0%
!!! GTATGACATTTTTGGGTCGG+TGG + chr3_4:1852295-1852314 None:intergenic 45.0%
!! CAAGTTAACTTGCGTAACGC+AGG - chr3_4:1852398-1852417 Msa0484480:three_prime_UTR 45.0%
ACGCATGTTAACATGCGTAG+GGG - chr3_4:1852433-1852452 Msa0484480:exon 45.0%
TAACATGCGTAGGGGTAGTT+TGG - chr3_4:1852441-1852460 Msa0484480:CDS 45.0%
GTGAAGGGAATGAGAAAAGG+GGG + chr3_4:1852530-1852549 None:intergenic 45.0%
CGTGAAGGGAATGAGAAAAG+GGG + chr3_4:1852531-1852550 None:intergenic 45.0%
AGACAGAGAGAGAACGTGAA+GGG + chr3_4:1852545-1852564 None:intergenic 45.0%
AAGACAGAGAGAGAACGTGA+AGG + chr3_4:1852546-1852565 None:intergenic 45.0%
AGAAGAGGATGAAGGGTTGA+GGG + chr3_4:1852576-1852595 None:intergenic 45.0%
! ATGGTGGAGAAGAGGATGAA+GGG + chr3_4:1852583-1852602 None:intergenic 45.0%
! GTTGATGGGAATGTGAGCTT+TGG - chr3_4:1852937-1852956 Msa0484480:CDS 45.0%
!! AATGTGAGCTTTGGGTTTGC+AGG - chr3_4:1852946-1852965 Msa0484480:CDS 45.0%
TGAACGAACGAGTGGAATGA+CGG - chr3_4:1853095-1853114 Msa0484480:intron 45.0%
! CGCATCACTTTGATAGCTTG+CGG + chr3_4:1853197-1853216 None:intergenic 45.0%
CGCAAGCTATCAAAGTGATG+CGG - chr3_4:1853195-1853214 Msa0484480:intron 45.0%
AAGTTGAAGATTCCGTTGGC+TGG - chr3_4:1853218-1853237 Msa0484480:intron 45.0%
GAAGGTTTATGCAGCAGTTG+GGG - chr3_4:1853467-1853486 Msa0484480:intron 45.0%
CAGTAGCTGATCCCACTTAA+CGG + chr3_4:1853718-1853737 None:intergenic 45.0%
GACAAACCATCATCTTGCCT+GGG - chr3_4:1853938-1853957 Msa0484480:intron 45.0%
!! GAAGCTCCGTTTTTAAACCC+AGG + chr3_4:1853958-1853977 None:intergenic 45.0%
AAACGGAGCTTCCTTCTGTT+CGG - chr3_4:1853966-1853985 Msa0484480:intron 45.0%
ACAGGATACCAAATCGAAGG+AGG + chr3_4:1854015-1854034 None:intergenic 45.0%
CCAACAGGATACCAAATCGA+AGG + chr3_4:1854018-1854037 None:intergenic 45.0%
!! CCTTCGATTTGGTATCCTGT+TGG - chr3_4:1854015-1854034 Msa0484480:intron 45.0%
ATTGCACGAGCATAACCAAC+AGG + chr3_4:1854033-1854052 None:intergenic 45.0%
! TGTTGGTTATGCTCGTGCAA+TGG - chr3_4:1854032-1854051 Msa0484480:intron 45.0%
TTTAGCGGTGTACTCAAGGA+GGG - chr3_4:1854134-1854153 Msa0484480:intron 45.0%
GGTTGTGATTGAGTGCATGT+CGG - chr3_4:1854276-1854295 Msa0484480:intron 45.0%
! AACATGGCCTCCGATTTTAC+CGG + chr3_4:1854873-1854892 None:intergenic 45.0%
CTGATCAGAGTACGTCTCAA+CGG - chr3_4:1855662-1855681 Msa0484480:CDS 45.0%
! ATTGTTCGCCGACTATTTGC+CGG + chr3_4:1855711-1855730 None:intergenic 45.0%
GGAATTCATATCCTCGTTGG+TGG + chr3_4:1855736-1855755 None:intergenic 45.0%
ACTCACAGGCATCAACAACT+TGG + chr3_4:1855933-1855952 None:intergenic 45.0%
CTAGCTAAGGCAATTAGGAG+AGG - chr3_4:1855994-1856013 Msa0484480:intron 45.0%
GGAGAGGAGTAATATGTGGT+TGG - chr3_4:1856010-1856029 Msa0484480:intron 45.0%
! AACACACGAGGAAAGCATGT+TGG + chr3_4:1856588-1856607 None:intergenic 45.0%
ACATGCTTTCCTCGTGTGTT+TGG - chr3_4:1856588-1856607 Msa0484480:intron 45.0%
ACTTCTAAGCCAAACACACG+AGG + chr3_4:1856600-1856619 None:intergenic 45.0%
GATCAGAAATATGCATGGCC+AGG - chr3_4:1856797-1856816 Msa0484480:intron 45.0%
AAATATGCATGGCCAGGAGT+TGG - chr3_4:1856803-1856822 Msa0484480:intron 45.0%
TCAGCTCCTTCACCAGTAAA+TGG + chr3_4:1856947-1856966 None:intergenic 45.0%
TTCACTCACCAGCATCTTTG+TGG + chr3_4:1856989-1857008 None:intergenic 45.0%
ACAGTCAATTCAGTCCTCTC+GGG + chr3_4:1857125-1857144 None:intergenic 45.0%
GACTGCAGCTTACAACACAT+AGG + chr3_4:1857327-1857346 None:intergenic 45.0%
!!! AATTTTAATATTAAAACAAT+TGG + chr3_4:1855055-1855074 None:intergenic 5.0%
!!! ATTGTTTTAATATTAAAATT+TGG - chr3_4:1855055-1855074 Msa0484480:intron 5.0%
!!! TTGTTTTAATATTAAAATTT+GGG - chr3_4:1855056-1855075 Msa0484480:intron 5.0%
!! AAAAAATACTAATTATTTAA+CGG - chr3_4:1855278-1855297 Msa0484480:intron 5.0%
!! TATTTAAAAAAAAAAAATTG+AGG - chr3_4:1855581-1855600 Msa0484480:intron 5.0%
GTAGCGTGACTTAAGTCACG+TGG + chr3_4:1852377-1852396 None:intergenic 50.0%
GAAGAGGATGAAGGGTTGAG+GGG + chr3_4:1852575-1852594 None:intergenic 50.0%
GAGAAGAGGATGAAGGGTTG+AGG + chr3_4:1852577-1852596 None:intergenic 50.0%
!! GATGGTGGAGAAGAGGATGA+AGG + chr3_4:1852584-1852603 None:intergenic 50.0%
GGAGGAAATGAACGAACGAG+TGG - chr3_4:1853087-1853106 Msa0484480:intron 50.0%
GCGGAAGTTGAAGATTCCGT+TGG - chr3_4:1853214-1853233 Msa0484480:intron 50.0%
CGTTAAGTGGGATCAGCTAC+TGG - chr3_4:1853716-1853735 Msa0484480:intron 50.0%
CGACAAACCATCATCTTGCC+TGG - chr3_4:1853937-1853956 Msa0484480:intron 50.0%
AACGGAGCTTCCTTCTGTTC+GGG - chr3_4:1853967-1853986 Msa0484480:intron 50.0%
GGATACCAAATCGAAGGAGG+TGG + chr3_4:1854012-1854031 None:intergenic 50.0%
GGTGTTTAGCGGTGTACTCA+AGG - chr3_4:1854130-1854149 Msa0484480:intron 50.0%
GTTTAGCGGTGTACTCAAGG+AGG - chr3_4:1854133-1854152 Msa0484480:intron 50.0%
CACTTGAGTCATCGGTCTTG+AGG + chr3_4:1855477-1855496 None:intergenic 50.0%
TTGAGGCTCCTAAGATTGCG+AGG - chr3_4:1855598-1855617 Msa0484480:intron 50.0%
CGTTGAGACGTACTCTGATC+AGG + chr3_4:1855664-1855683 None:intergenic 50.0%
AGAGTACGTCTCAACGGTGA+CGG - chr3_4:1855668-1855687 Msa0484480:CDS 50.0%
GCGAACAATTACCACCAACG+AGG - chr3_4:1855722-1855741 Msa0484480:intron 50.0%
TCGTCTTCACACAGTCCTCT+TGG + chr3_4:1855757-1855776 None:intergenic 50.0%
! GGAAAGGTGTACTTCGCAGA+TGG - chr3_4:1856687-1856706 Msa0484480:five_prime_UTR 50.0%
ATGGCTGGGAGATCATTCAG+AGG - chr3_4:1856706-1856725 Msa0484480:intron 50.0%
ATTGAGGATAGGCCAACTCC+TGG + chr3_4:1856818-1856837 None:intergenic 50.0%
!! GGGTGGATTGGATTGAGGAT+AGG + chr3_4:1856829-1856848 None:intergenic 50.0%
!! TTCTGGGGTGGATTGGATTG+AGG + chr3_4:1856834-1856853 None:intergenic 50.0%
!! CAGCAATTTCTGGGGTGGAT+TGG + chr3_4:1856841-1856860 None:intergenic 50.0%
AGTCAATTCAGTCCTCTCGG+GGG + chr3_4:1857123-1857142 None:intergenic 50.0%
CAGTCAATTCAGTCCTCTCG+GGG + chr3_4:1857124-1857143 None:intergenic 50.0%
!! ATGGGATGATGGTGGACGGT+GGG + chr3_4:1852606-1852625 None:intergenic 55.0%
!! TGATGGTGGGGATGGGATGA+TGG + chr3_4:1852617-1852636 None:intergenic 55.0%
! GAGAAGGACGAGTGATGGTG+GGG + chr3_4:1852629-1852648 None:intergenic 55.0%
GGAGAAGGACGAGTGATGGT+GGG + chr3_4:1852630-1852649 None:intergenic 55.0%
AGGAGAAGGACGAGTGATGG+TGG + chr3_4:1852631-1852650 None:intergenic 55.0%
GAGAGGAGAAGGACGAGTGA+TGG + chr3_4:1852634-1852653 None:intergenic 55.0%
TTCAGGGCAGCAGATGCAGT+AGG - chr3_4:1852761-1852780 Msa0484480:CDS 55.0%
TCAGGGCAGCAGATGCAGTA+GGG - chr3_4:1852762-1852781 Msa0484480:CDS 55.0%
! CTGTCGATTGGACCAGCCAA+CGG + chr3_4:1853233-1853252 None:intergenic 55.0%
AGGTCGTCGTACCTGTCGAT+TGG + chr3_4:1853245-1853264 None:intergenic 55.0%
ACGGAGCTTCCTTCTGTTCG+GGG - chr3_4:1853968-1853987 Msa0484480:intron 55.0%
GAGCTCCACCTCCTTCGATT+TGG - chr3_4:1854004-1854023 Msa0484480:intron 55.0%
AGGGTCACTTCAACCCATCC+TGG - chr3_4:1854153-1854172 Msa0484480:intron 55.0%
TATCAGAGTCAGGGCCGTTC+CGG - chr3_4:1854851-1854870 Msa0484480:intron 55.0%
CAGGGCCGTTCCGGTAAAAT+CGG - chr3_4:1854860-1854879 Msa0484480:intron 55.0%
! GGCCTCCGATTTTACCGGAA+CGG + chr3_4:1854868-1854887 None:intergenic 55.0%
GGCATGTGCAAGGTGAGCTA+CGG + chr3_4:1855631-1855650 None:intergenic 55.0%
AGCTCACCTTGCACATGCCA+AGG - chr3_4:1855632-1855651 Msa0484480:CDS 55.0%
GCTCACCTTGCACATGCCAA+GGG - chr3_4:1855633-1855652 Msa0484480:CDS 55.0%
AGACGTACTCTGATCAGGCC+CGG + chr3_4:1855659-1855678 None:intergenic 55.0%
!! CTGTGGTGCCGGCAAATAGT+CGG - chr3_4:1855700-1855719 Msa0484480:intron 55.0%
AGGTGTACTTCGCAGATGGC+TGG - chr3_4:1856691-1856710 Msa0484480:five_prime_UTR 55.0%
GGTGTACTTCGCAGATGGCT+GGG - chr3_4:1856692-1856711 Msa0484480:five_prime_UTR 55.0%
! AGCAGCAGCAATTTCTGGGG+TGG + chr3_4:1856846-1856865 None:intergenic 55.0%
GTCAATTCAGTCCTCTCGGG+GGG + chr3_4:1857122-1857141 None:intergenic 55.0%
CACACGAGACACCTTCATCG+TGG + chr3_4:1857193-1857212 None:intergenic 55.0%
!! ACGGTGGGATGGTGGAGAAG+AGG + chr3_4:1852591-1852610 None:intergenic 60.0%
!! GATGATGGTGGACGGTGGGA+TGG + chr3_4:1852602-1852621 None:intergenic 60.0%
!! GATGGGATGATGGTGGACGG+TGG + chr3_4:1852607-1852626 None:intergenic 60.0%
!! GGGGATGGGATGATGGTGGA+CGG + chr3_4:1852610-1852629 None:intergenic 60.0%
! TGGTGGGGATGGGATGATGG+TGG + chr3_4:1852614-1852633 None:intergenic 60.0%
!! GGACGAGTGATGGTGGGGAT+GGG + chr3_4:1852624-1852643 None:intergenic 60.0%
!! AGGACGAGTGATGGTGGGGA+TGG + chr3_4:1852625-1852644 None:intergenic 60.0%
CAGGGCAGCAGATGCAGTAG+GGG - chr3_4:1852763-1852782 Msa0484480:CDS 60.0%
AGGGCAGCAGATGCAGTAGG+GGG - chr3_4:1852764-1852783 Msa0484480:CDS 60.0%
! CGTTGGCTGGTCCAATCGAC+AGG - chr3_4:1853231-1853250 Msa0484480:intron 60.0%
CCTTCTGTTCGGGGTCCTTC+CGG - chr3_4:1853977-1853996 Msa0484480:intron 60.0%
AAGGAGGTGGAGCTCGAAGC+CGG + chr3_4:1853999-1854018 None:intergenic 60.0%
GGCCGTTCCGGTAAAATCGG+AGG - chr3_4:1854863-1854882 Msa0484480:intron 60.0%
GCTCCTAAGATTGCGAGGCC+CGG - chr3_4:1855603-1855622 Msa0484480:intron 60.0%
TGCAAGGTGAGCTACGGTGC+CGG + chr3_4:1855625-1855644 None:intergenic 60.0%
ACCTTGCACATGCCAAGGGC+CGG - chr3_4:1855637-1855656 Msa0484480:CDS 60.0%
TCTCGGGGGGAAATGCAGCT+TGG + chr3_4:1857109-1857128 None:intergenic 60.0%
AAGCTGCATTTCCCCCCGAG+AGG - chr3_4:1857108-1857127 Msa0484480:five_prime_UTR 60.0%
!! GATGGTGGACGGTGGGATGG+TGG + chr3_4:1852599-1852618 None:intergenic 65.0%
CCGGAAGGACCCCGAACAGA+AGG + chr3_4:1853980-1853999 None:intergenic 65.0%
AGGTGGAGCTCGAAGCCGGA+AGG + chr3_4:1853995-1854014 None:intergenic 65.0%
GTGCCGGGCCTCGCAATCTT+AGG + chr3_4:1855609-1855628 None:intergenic 65.0%
GCAAGGTGAGCTACGGTGCC+GGG + chr3_4:1855624-1855643 None:intergenic 65.0%
CCTTGCACATGCCAAGGGCC+GGG - chr3_4:1855638-1855657 Msa0484480:CDS 65.0%
! GTCTCAACGGTGACGGCGAG+CGG - chr3_4:1855675-1855694 Msa0484480:CDS 65.0%
CCCGGCCCTTGGCATGTGCA+AGG + chr3_4:1855641-1855660 None:intergenic 70.0%
CTCTGATCAGGCCCGGCCCT+TGG + chr3_4:1855652-1855671 None:intergenic 70.0%
! GGTGACGGCGAGCGGTTCTG+TGG - chr3_4:1855683-1855702 Msa0484480:CDS 70.0%
GGCGAGCGGTTCTGTGGTGC+CGG - chr3_4:1855689-1855708 Msa0484480:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 1852157 1857497 1852157 ID=Msa0484480;Name=Msa0484480
chr3_4 mRNA 1852157 1857497 1852157 ID=Msa0484480-mRNA-1;Parent=Msa0484480;Name=Msa0484480-mRNA-1;_AED=0.30;_eAED=0.30;_QI=783|0.42|0.62|1|0.14|0|8|277|243
chr3_4 exon 1852157 1852571 1852157 ID=Msa0484480-mRNA-1:exon:574;Parent=Msa0484480-mRNA-1
chr3_4 exon 1852677 1852891 1852677 ID=Msa0484480-mRNA-1:exon:573;Parent=Msa0484480-mRNA-1
chr3_4 exon 1852910 1853084 1852910 ID=Msa0484480-mRNA-1:exon:572;Parent=Msa0484480-mRNA-1
chr3_4 exon 1855618 1855717 1855618 ID=Msa0484480-mRNA-1:exon:571;Parent=Msa0484480-mRNA-1
chr3_4 exon 1856402 1856593 1856402 ID=Msa0484480-mRNA-1:exon:570;Parent=Msa0484480-mRNA-1
chr3_4 exon 1856687 1856723 1856687 ID=Msa0484480-mRNA-1:exon:569;Parent=Msa0484480-mRNA-1
chr3_4 exon 1856820 1857201 1856820 ID=Msa0484480-mRNA-1:exon:568;Parent=Msa0484480-mRNA-1
chr3_4 exon 1857222 1857497 1857222 ID=Msa0484480-mRNA-1:exon:567;Parent=Msa0484480-mRNA-1
chr3_4 five_prime_UTR 1857222 1857497 1857222 ID=Msa0484480-mRNA-1:five_prime_utr;Parent=Msa0484480-mRNA-1
chr3_4 five_prime_UTR 1856820 1857201 1856820 ID=Msa0484480-mRNA-1:five_prime_utr;Parent=Msa0484480-mRNA-1
chr3_4 five_prime_UTR 1856687 1856723 1856687 ID=Msa0484480-mRNA-1:five_prime_utr;Parent=Msa0484480-mRNA-1
chr3_4 five_prime_UTR 1856506 1856593 1856506 ID=Msa0484480-mRNA-1:five_prime_utr;Parent=Msa0484480-mRNA-1
chr3_4 CDS 1856402 1856505 1856402 ID=Msa0484480-mRNA-1:cds;Parent=Msa0484480-mRNA-1
chr3_4 CDS 1855618 1855717 1855618 ID=Msa0484480-mRNA-1:cds;Parent=Msa0484480-mRNA-1
chr3_4 CDS 1852910 1853084 1852910 ID=Msa0484480-mRNA-1:cds;Parent=Msa0484480-mRNA-1
chr3_4 CDS 1852677 1852891 1852677 ID=Msa0484480-mRNA-1:cds;Parent=Msa0484480-mRNA-1
chr3_4 CDS 1852434 1852571 1852434 ID=Msa0484480-mRNA-1:cds;Parent=Msa0484480-mRNA-1
chr3_4 three_prime_UTR 1852157 1852433 1852157 ID=Msa0484480-mRNA-1:three_prime_utr;Parent=Msa0484480-mRNA-1
Gene Sequence

>Msa0484480

ATGTGCAATAACAATTTCTCTGGTCAAAACTTTGATCGGCTGATGCCGCAAGCTATCAAAGTGATGCGGAAGTTGAAGATTCCGTTGGCTGGTCCAATCGACAGCGACAAACCATCATCTTGCCTGGGTTTAAAAACGGAGCTTCCTTCTGTTCGGGGTCCTTCCGGCTTCGAGCTCCACCTCCTTCGATTTGGTATCCTGTTGAAGAAGGGAAGACTACCAACATGCTTTCCTCGTGTGTTTGGCTTAGAAGTCGCACCTTTTGTTATGATACGTGATCCAAACTATAACGAGATTGAGGTTGCAGTTGAAAAGAAGGATGGAAAGGTGTACTTCGCAGATGGCTGGGAGATCATTCAGAGGTTTTACAAGATTTTTGTTGTATATGCAAACCGACATATCTTTCTTTTTGAGATCAGAAATATGCATGGCCAGGAGTTGGCCTATCCTCAATCCAATCCACCCCAGAAATTGCTGCTGCTAAATCAAAAGGATTCTGATTACAGAGACTCATTTATTCGGTATGGTTATAATGCTCATTTTCTACCCACAAAATTCTGCCATTTACTGGTGAAGGAGCTGAGTGATGCTGATAAACTAAATTGGCTTGGGTTCTGCCAAGCTGCATTTCCCCCCGAGAGGACTGAATTGACTGTTGTTGATTACCTTGGTTACACTTGGAAACTGACCATGAATTTCTGCCACGATGAAGGTGTCTCGTGTGTACTTTGA
Protein sequence

>Msa0484480

MCNNNFSGQNFDRLMPQAIKVMRKLKIPLAGPIDSDKPSSCLGLKTELPSVRGPSGFELHLLRFGILLKKGRLPTCFPRVFGLEVAPFVMIRDPNYNEIEVAVEKKDGKVYFADGWEIIQRFYKIFVVYANRHIFLFEIRNMHGQELAYPQSNPPQKLLLLNQKDSDYRDSFIRYGYNAHFLPTKFCHLLVKELSDADKLNWLGFCQAAFPPERTELTVVDYLGYTWKLTMNFCHDEGVSCVL*