AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0045190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0045190 MtrunA17_Chr7g0232921 52.632 171 50 2 69 233 56 201 7.65e-58 182
Msa0045190 MtrunA17_Chr6g0473661 34.483 174 92 4 70 233 256 417 4.25e-24 100
Msa0045190 MtrunA17_Chr4g0054601 45.361 97 47 1 83 173 1 97 1.48e-22 89.0
Msa0045190 MtrunA17_Chr8g0365871 69.767 43 13 0 199 241 14 56 2.55e-17 75.1
Msa0045190 MtrunA17_Chr4g0023021 70.455 44 13 0 199 242 5 48 8.40e-17 73.9
Msa0045190 MtrunA17_Chr6g0473651 38.043 92 51 1 70 155 225 316 2.62e-14 71.6
Msa0045190 MtrunA17_Chr1g0206471 27.586 174 112 3 73 234 55 226 5.05e-14 69.7
Msa0045190 MtrunA17_Chr8g0366201 63.636 44 15 1 200 243 4 46 5.90e-13 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 132 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGAAAATTTAATCAAAA+TGG 0.126041 1_1:+76994966 Msa0045190:exon
ATATATGAAAAGAATTATTT+TGG 0.144047 1_1:-76989936 None:intergenic
GATTTAGCAGCAGCAATTTC+TGG 0.190081 1_1:-76994599 None:intergenic
CACAAAATTCTGCCATTTAC+TGG 0.195427 1_1:+76994683 Msa0045190:CDS
TTAAGTGTTTCAGATGATTC+AGG 0.268064 1_1:+76990495 Msa0045190:five_prime_UTR
AACGGAGCTTCCTTCTGTTC+GGG 0.297220 1_1:+76991718 Msa0045190:CDS
TGGGAATGAGCGAAATCATT+TGG 0.305908 1_1:+76990225 Msa0045190:five_prime_UTR
ACCTCAATCTCGTTATAGTT+TGG 0.308204 1_1:-76994396 None:intergenic
AATCATTACATATCTTAAAA+AGG 0.325921 1_1:-76995125 None:intergenic
ATTATGAACAGAAACTAAAT+TGG 0.332960 1_1:+76994823 Msa0045190:intron
TCAGCTCCTTCACCAGTAAA+TGG 0.335075 1_1:-76994695 None:intergenic
TATCACTAGTGTAGTTAGAT+AGG 0.342979 1_1:-76990085 None:intergenic
CCTTCTGTTCGGGGTCCTTC+CGG 0.349284 1_1:+76991728 Msa0045190:CDS
ATATAATATTAGTTACATAT+TGG 0.350104 1_1:+76989961 Msa0045190:five_prime_UTR
ACATGCTTTCCTCGTGTGTT+TGG 0.352558 1_1:+76994339 Msa0045190:CDS
AACATACTCAGAGGAGAAAT+AGG 0.358919 1_1:-76990570 None:intergenic
AATGTGAGCTTTGGGTTTGC+AGG 0.368268 1_1:+76990697 Msa0045190:five_prime_UTR
ATTACAGAGACTCATTTATT+CGG 0.374753 1_1:+76994634 Msa0045190:CDS
CAGCAATTTCTGGGGTGGAT+TGG 0.378343 1_1:-76994589 None:intergenic
TTGATGGGAATGTGAGCTTT+GGG 0.379698 1_1:+76990689 Msa0045190:five_prime_UTR
GATGGGATGATGGTGGACGG+TGG 0.381501 1_1:-76990355 None:intergenic
GTTGATGGGAATGTGAGCTT+TGG 0.388955 1_1:+76990688 Msa0045190:five_prime_UTR
TTTGAAAATTTAATCAAAAT+GGG 0.393395 1_1:+76994967 Msa0045190:exon
AAACGGAGCTTCCTTCTGTT+CGG 0.393580 1_1:+76991717 Msa0045190:CDS
GAGCTCCACCTCCTTCGATT+TGG 0.397613 1_1:+76991755 Msa0045190:CDS
GGGAATGAGCGAAATCATTT+GGG 0.399175 1_1:+76990226 Msa0045190:five_prime_UTR
AGAAGAGGATGAAGGGTTGA+GGG 0.407229 1_1:-76990324 None:intergenic
AGGACGAGTGATGGTGGGGA+TGG 0.407732 1_1:-76990373 None:intergenic
TAACATGCGTAGGGGTAGTT+TGG 0.407889 1_1:+76990192 Msa0045190:five_prime_UTR
AGGAGAAGGACGAGTGATGG+TGG 0.408727 1_1:-76990379 None:intergenic
GAGAAGAGGATGAAGGGTTG+AGG 0.412381 1_1:-76990325 None:intergenic
ATTTAGCAGCAGCAATTTCT+GGG 0.416789 1_1:-76994598 None:intergenic
AACGTGAAGGGAATGAGAAA+AGG 0.417396 1_1:-76990281 None:intergenic
CGACAAACCATCATCTTGCC+TGG 0.423337 1_1:+76991688 Msa0045190:CDS
GAACAGAAACTAAATTGGCT+TGG 0.426932 1_1:+76994828 Msa0045190:intron
AACAGAAACTAAATTGGCTT+GGG 0.431232 1_1:+76994829 Msa0045190:intron
AGGTGTACTTCGCAGATGGC+TGG 0.432414 1_1:+76994442 Msa0045190:CDS
TGAGGTTGCAGTTGAAAAGA+AGG 0.432434 1_1:+76994413 Msa0045190:CDS
ACGTGAAGGGAATGAGAAAA+GGG 0.434277 1_1:-76990280 None:intergenic
CGCATCACTTTGATAGCTTG+CGG 0.446790 1_1:-76990945 None:intergenic
GATGGTGGACGGTGGGATGG+TGG 0.447094 1_1:-76990347 None:intergenic
TGATGGTGGGGATGGGATGA+TGG 0.455471 1_1:-76990365 None:intergenic
GAGAGGAGAAGGACGAGTGA+TGG 0.457120 1_1:-76990382 None:intergenic
ATGTGCAATAACAATTTCTC+TGG 0.462147 1_1:+76990900 Msa0045190:CDS
ATTGCTGCTGCTAAATCAAA+AGG 0.464828 1_1:+76994605 Msa0045190:CDS
TTCTGGGGTGGATTGGATTG+AGG 0.468292 1_1:-76994582 None:intergenic
GATGATGGTGGACGGTGGGA+TGG 0.477054 1_1:-76990350 None:intergenic
TTGATTACCTTGGTTACACT+TGG 0.481524 1_1:+76994898 Msa0045190:CDS
TTCATCGTGGCAGAAATTCA+TGG 0.481797 1_1:-76994928 None:intergenic
AACAGTCAATTCAGTCCTCT+CGG 0.482477 1_1:-76994874 None:intergenic
TCTCTGGTCAAAACTTTGAT+CGG 0.482615 1_1:+76990916 Msa0045190:CDS
ATGAATTTCTGCCACGATGA+AGG 0.482831 1_1:+76994930 Msa0045190:CDS
GGACGAGTGATGGTGGGGAT+GGG 0.482919 1_1:-76990372 None:intergenic
ATGGGATGATGGTGGACGGT+GGG 0.484034 1_1:-76990354 None:intergenic
CTAATGTATTTGTAGAAGAA+GGG 0.485098 1_1:+76994306 Msa0045190:intron
AGAGACTCATTTATTCGGTA+TGG 0.485190 1_1:+76994639 Msa0045190:CDS
AAAGGATTAAGCCTAAATTC+TGG 0.487160 1_1:-76995021 None:intergenic
ACAGTCAATTCAGTCCTCTC+GGG 0.488479 1_1:-76994873 None:intergenic
GGAGAAGGACGAGTGATGGT+GGG 0.488606 1_1:-76990378 None:intergenic
AAGTTGAAGATTCCGTTGGC+TGG 0.499507 1_1:+76990969 Msa0045190:CDS
GGATCACGTATCATAACAAA+AGG 0.502100 1_1:-76994375 None:intergenic
TTTAAACCCAGGCAAGATGA+TGG 0.504053 1_1:-76991695 None:intergenic
GAAGAGGATGAAGGGTTGAG+GGG 0.506570 1_1:-76990323 None:intergenic
AAAGTATGGAAGAGAGGAGA+AGG 0.507006 1_1:-76990393 None:intergenic
GATGGTGGAGAAGAGGATGA+AGG 0.507056 1_1:-76990332 None:intergenic
CCGGAAGGACCCCGAACAGA+AGG 0.510653 1_1:-76991728 None:intergenic
CCTTCGATTTGGTATCCTGT+TGG 0.512922 1_1:+76991766 Msa0045190:CDS
TAAGTGTTTCAGATGATTCA+GGG 0.513198 1_1:+76990496 Msa0045190:five_prime_UTR
AAGGAGGTGGAGCTCGAAGC+CGG 0.513306 1_1:-76991747 None:intergenic
GGGGATGGGATGATGGTGGA+CGG 0.513477 1_1:-76990358 None:intergenic
TATCTAACTACACTAGTGAT+AGG 0.516941 1_1:+76990087 Msa0045190:five_prime_UTR
TGGTGGGGATGGGATGATGG+TGG 0.525480 1_1:-76990362 None:intergenic
ATTCTGCCATTTACTGGTGA+AGG 0.527022 1_1:+76994689 Msa0045190:CDS
CGTTGGCTGGTCCAATCGAC+AGG 0.527454 1_1:+76990982 Msa0045190:CDS
GGTGTACTTCGCAGATGGCT+GGG 0.535542 1_1:+76994443 Msa0045190:CDS
AAATCATTTGGGTAAAGAGC+AGG 0.535966 1_1:+76990237 Msa0045190:five_prime_UTR
ATCACTAGTGTAGTTAGATA+GGG 0.545148 1_1:-76990084 None:intergenic
ACGGTGGGATGGTGGAGAAG+AGG 0.545601 1_1:-76990339 None:intergenic
TCAGGGCAGCAGATGCAGTA+GGG 0.546616 1_1:+76990513 Msa0045190:five_prime_UTR
TGAACGAACGAGTGGAATGA+CGG 0.547308 1_1:+76990846 Msa0045190:five_prime_UTR
AAATATGCATGGCCAGGAGT+TGG 0.548163 1_1:+76994554 Msa0045190:CDS
ATGGTGGAGAAGAGGATGAA+GGG 0.549645 1_1:-76990331 None:intergenic
GACAAACCATCATCTTGCCT+GGG 0.553812 1_1:+76991689 Msa0045190:CDS
AGACAGAGAGAGAACGTGAA+GGG 0.554062 1_1:-76990293 None:intergenic
AACGCATGTTAACATGCGTA+GGG 0.558177 1_1:+76990183 Msa0045190:five_prime_UTR
ATTGAGGATAGGCCAACTCC+TGG 0.560143 1_1:-76994566 None:intergenic
AGCAGCAGCAATTTCTGGGG+TGG 0.560422 1_1:-76994594 None:intergenic
GATCAGAAATATGCATGGCC+AGG 0.562033 1_1:+76994548 Msa0045190:CDS
GAGAAGGACGAGTGATGGTG+GGG 0.568649 1_1:-76990377 None:intergenic
TTGACTGTTGTTGATTACCT+TGG 0.569833 1_1:+76994888 Msa0045190:CDS
GGATACCAAATCGAAGGAGG+TGG 0.573334 1_1:-76991760 None:intergenic
AGGTCGTCGTACCTGTCGAT+TGG 0.577304 1_1:-76990993 None:intergenic
ACTCAGAGGAGAAATAGGAT+TGG 0.577314 1_1:-76990565 None:intergenic
TTTGAGATCAGAAATATGCA+TGG 0.581381 1_1:+76994543 Msa0045190:CDS
GTTGCAGTTGAAAAGAAGGA+TGG 0.584869 1_1:+76994417 Msa0045190:CDS
TCCAAACTATAACGAGATTG+AGG 0.593219 1_1:+76994395 Msa0045190:CDS
ACACTAGTGATAGGTCATGA+TGG 0.604326 1_1:+76990096 Msa0045190:five_prime_UTR
ACGGAGCTTCCTTCTGTTCG+GGG 0.605518 1_1:+76991719 Msa0045190:CDS
AAGACAGAGAGAGAACGTGA+AGG 0.606328 1_1:-76990294 None:intergenic
GGAAAGGTGTACTTCGCAGA+TGG 0.607746 1_1:+76994438 Msa0045190:CDS
CAGGGCAGCAGATGCAGTAG+GGG 0.608264 1_1:+76990514 Msa0045190:five_prime_UTR
TAACGCATGTTAACATGCGT+AGG 0.609137 1_1:+76990182 Msa0045190:five_prime_UTR
GGGTGGATTGGATTGAGGAT+AGG 0.609663 1_1:-76994577 None:intergenic
CTGTCGATTGGACCAGCCAA+CGG 0.616730 1_1:-76990981 None:intergenic
AGGTGGAGCTCGAAGCCGGA+AGG 0.617798 1_1:-76991743 None:intergenic
GCTTGAACAAAGGTGAAACA+TGG 0.618233 1_1:+76990817 Msa0045190:five_prime_UTR
CAGTCAATTCAGTCCTCTCG+GGG 0.621421 1_1:-76994872 None:intergenic
ATTGCAACGGAAATGAGTAC+AGG 0.621467 1_1:-76995097 None:intergenic
TTCAGGGCAGCAGATGCAGT+AGG 0.631594 1_1:+76990512 Msa0045190:five_prime_UTR
GCGGAAGTTGAAGATTCCGT+TGG 0.632664 1_1:+76990965 Msa0045190:CDS
AGTTGAAAAGAAGGATGGAA+AGG 0.635830 1_1:+76994422 Msa0045190:CDS
AACACACGAGGAAAGCATGT+TGG 0.637782 1_1:-76994336 None:intergenic
CCAACAGGATACCAAATCGA+AGG 0.639694 1_1:-76991766 None:intergenic
GGAGGAAATGAACGAACGAG+TGG 0.640086 1_1:+76990838 Msa0045190:five_prime_UTR
TCAGTTTCCAAGTGTAACCA+AGG 0.644121 1_1:-76994905 None:intergenic
GTCAATTCAGTCCTCTCGGG+GGG 0.645033 1_1:-76994870 None:intergenic
AGGGCAGCAGATGCAGTAGG+GGG 0.647544 1_1:+76990515 Msa0045190:five_prime_UTR
CGCAAGCTATCAAAGTGATG+CGG 0.649386 1_1:+76990946 Msa0045190:CDS
TGAAGTCGATGCTTGAACAA+AGG 0.658666 1_1:+76990807 Msa0045190:intron
CGTGAAGGGAATGAGAAAAG+GGG 0.671933 1_1:-76990279 None:intergenic
GTGAAGGGAATGAGAAAAGG+GGG 0.673980 1_1:-76990278 None:intergenic
TTTAGCAGCAGCAATTTCTG+GGG 0.674457 1_1:-76994597 None:intergenic
ACAGGATACCAAATCGAAGG+AGG 0.685005 1_1:-76991763 None:intergenic
ACATAGAATTGAGAAAACAA+AGG 0.685483 1_1:-76995039 None:intergenic
ACTTCTAAGCCAAACACACG+AGG 0.689309 1_1:-76994348 None:intergenic
AGTCAATTCAGTCCTCTCGG+GGG 0.695605 1_1:-76994871 None:intergenic
TGAACAAAGGTGAAACATGG+AGG 0.698848 1_1:+76990820 Msa0045190:five_prime_UTR
ATGGCTGGGAGATCATTCAG+AGG 0.704131 1_1:+76994457 Msa0045190:CDS
GTAGCGTGACTTAAGTCACG+TGG 0.717771 1_1:-76990144 None:intergenic
CACACGAGACACCTTCATCG+TGG 0.729627 1_1:-76994941 None:intergenic
ACGCATGTTAACATGCGTAG+GGG 0.733415 1_1:+76990184 Msa0045190:five_prime_UTR
GACTGCAGCTTACAACACAT+AGG 0.734195 1_1:-76995075 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATGAAAAGAATTATTT+TGG - chr1_1:76989939-76989958 None:intergenic 10.0%
!! ATATAATATTAGTTACATAT+TGG + chr1_1:76989961-76989980 Msa0045190:five_prime_UTR 10.0%
!!! TATTATAGAAATTTTCAAAT+TGG + chr1_1:76991079-76991098 Msa0045190:intron 10.0%
!!! ATTATAGAAATTTTCAAATT+GGG + chr1_1:76991080-76991099 Msa0045190:intron 10.0%
!!! TATATTTAAGATCATTTTAT+TGG + chr1_1:76994065-76994084 Msa0045190:intron 10.0%
!! TTTGAAAATTTAATCAAAAT+GGG + chr1_1:76994967-76994986 Msa0045190:exon 10.0%
!!! TTGTGTAATTTTGATATTTA+TGG - chr1_1:76989987-76990006 None:intergenic 15.0%
!! GAAATTGAAAAAAAAAAGTA+TGG - chr1_1:76990410-76990429 None:intergenic 15.0%
!!! CAAATTTATTGAGATTTTTA+GGG - chr1_1:76990472-76990491 None:intergenic 15.0%
!! AATCATTTCATCATTTAAAA+AGG - chr1_1:76990757-76990776 None:intergenic 15.0%
!!! TTATAGAAATTTTCAAATTG+GGG + chr1_1:76991081-76991100 Msa0045190:intron 15.0%
!!! TTTTACCACTAATAATATAA+AGG - chr1_1:76991320-76991339 None:intergenic 15.0%
!!! TTTTAAACAAAAATCAGAAA+TGG - chr1_1:76991964-76991983 None:intergenic 15.0%
!! TAAAATTTAAATTTCGTTTC+TGG + chr1_1:76991979-76991998 Msa0045190:intron 15.0%
!! TTGAATTTAAAGATTGTATA+AGG - chr1_1:76992565-76992584 None:intergenic 15.0%
!! TTTAATATTAAAACAATTGG+TGG - chr1_1:76992803-76992822 None:intergenic 15.0%
!! TGATAAACTAATACTAATAT+CGG + chr1_1:76992956-76992975 Msa0045190:intron 15.0%
!!! AAATGCATTTTAAATTGTAA+TGG + chr1_1:76993133-76993152 Msa0045190:intron 15.0%
!! AAGATAAAAAAAAGATGAAA+GGG - chr1_1:76993707-76993726 None:intergenic 15.0%
!! AAAGATAAAAAAAAGATGAA+AGG - chr1_1:76993708-76993727 None:intergenic 15.0%
!! AATTATAGTTTCAGTAAATA+TGG + chr1_1:76993830-76993849 Msa0045190:intron 15.0%
!!! TTTATATTGATTTAGTTAGT+TGG - chr1_1:76993943-76993962 None:intergenic 15.0%
!! CTAAATCAATATAAATCTTA+AGG + chr1_1:76993948-76993967 Msa0045190:intron 15.0%
!!! TTTTTTGATGTTATTTGTTT+TGG + chr1_1:76994209-76994228 Msa0045190:intron 15.0%
!!! CTTTGAAAATTTAATCAAAA+TGG + chr1_1:76994966-76994985 Msa0045190:exon 15.0%
!! AATCATTACATATCTTAAAA+AGG - chr1_1:76995128-76995147 None:intergenic 15.0%
!!! TGAAAAACTAATTTTTGAAA+AGG - chr1_1:76995198-76995217 None:intergenic 15.0%
!!! CCAAATTTATTGAGATTTTT+AGG - chr1_1:76990473-76990492 None:intergenic 20.0%
!! CCTAAAAATCTCAATAAATT+TGG + chr1_1:76990470-76990489 Msa0045190:five_prime_UTR 20.0%
!!! AATTTATAGACTTTTGTTGA+TGG + chr1_1:76990673-76990692 Msa0045190:intron 20.0%
!!! ATTTATAGACTTTTGTTGAT+GGG + chr1_1:76990674-76990693 Msa0045190:intron 20.0%
!! TTCATCATTTAAAAAGGTTA+AGG - chr1_1:76990751-76990770 None:intergenic 20.0%
!! ATAATTGTTGTCCATATAAT+TGG + chr1_1:76991031-76991050 Msa0045190:intron 20.0%
!!! TATAGAAATTTTCAAATTGG+GGG + chr1_1:76991082-76991101 Msa0045190:intron 20.0%
!!! GTTTTCCTTTATATTATTAG+TGG + chr1_1:76991312-76991331 Msa0045190:intron 20.0%
!!! TGTGTTTCTTTTGATTTTTT+TGG + chr1_1:76992378-76992397 Msa0045190:intron 20.0%
!! ATTTAAAGATTGTATAAGGA+AGG - chr1_1:76992561-76992580 None:intergenic 20.0%
!! CATGTTCAAATGTTAAAAAT+GGG + chr1_1:76992638-76992657 Msa0045190:intron 20.0%
!!! AAAAATCTTGTTTTTCCATA+GGG - chr1_1:76992665-76992684 None:intergenic 20.0%
!!! AAAAAATCTTGTTTTTCCAT+AGG - chr1_1:76992666-76992685 None:intergenic 20.0%
!! TAAGTAAAAGTAAGTTTGTA+TGG + chr1_1:76992743-76992762 Msa0045190:intron 20.0%
!! AAGTAAAAGTAAGTTTGTAT+GGG + chr1_1:76992744-76992763 Msa0045190:intron 20.0%
!!! GATGATTCTTTTTAAGTTTT+TGG - chr1_1:76992859-76992878 None:intergenic 20.0%
!!! GATTTAATTTGCATTGTTAA+TGG + chr1_1:76993051-76993070 Msa0045190:intron 20.0%
!!! GTAATTGAGACTTTTATATT+TGG + chr1_1:76993172-76993191 Msa0045190:intron 20.0%
!! AAAAAAATCAATAGACATCT+TGG - chr1_1:76993276-76993295 None:intergenic 20.0%
!!! ATTTTGATTTAGTTATCAGT+TGG - chr1_1:76993863-76993882 None:intergenic 20.0%
!! ATCAATATAAATCTTAAGGA+AGG + chr1_1:76993952-76993971 Msa0045190:intron 20.0%
!! TGAAACTATACTATATTTGT+TGG + chr1_1:76994151-76994170 Msa0045190:intron 20.0%
!! ATTATGAACAGAAACTAAAT+TGG + chr1_1:76994823-76994842 Msa0045190:intron 20.0%
!! GTAGTTTGGTATTTTACTTT+GGG + chr1_1:76990206-76990225 Msa0045190:five_prime_UTR 25.0%
!! AAAAAAAAAGTATGGAAGAG+AGG - chr1_1:76990402-76990421 None:intergenic 25.0%
! AAAAAAAAAACTCAGATCCA+TGG - chr1_1:76990605-76990624 None:intergenic 25.0%
! CAGTTGTAAAAACAAATTTG+TGG - chr1_1:76990634-76990653 None:intergenic 25.0%
! AAGAAGAAAACAGTATCATT+AGG - chr1_1:76990782-76990801 None:intergenic 25.0%
!!! ATTATCTTGATTTTGGAAGA+AGG - chr1_1:76991016-76991035 None:intergenic 25.0%
!! GACAACAATTATCTTGATTT+TGG - chr1_1:76991023-76991042 None:intergenic 25.0%
!! ATAGAAATTTTCAAATTGGG+GGG + chr1_1:76991083-76991102 Msa0045190:intron 25.0%
! AGCAAGAACATTTGTTTAAT+TGG + chr1_1:76991116-76991135 Msa0045190:intron 25.0%
!! TCTAGAACATATAAAAGAGA+TGG - chr1_1:76991200-76991219 None:intergenic 25.0%
!!! TCTCTTTTATATGTTCTAGA+AGG + chr1_1:76991200-76991219 Msa0045190:intron 25.0%
! TATATTCACTTCTATCAGTT+GGG - chr1_1:76991396-76991415 None:intergenic 25.0%
! TTATATTCACTTCTATCAGT+TGG - chr1_1:76991397-76991416 None:intergenic 25.0%
! ACTGATAGAAGTGAATATAA+TGG + chr1_1:76991397-76991416 Msa0045190:intron 25.0%
! CTGATAGAAGTGAATATAAT+GGG + chr1_1:76991398-76991417 Msa0045190:intron 25.0%
! ATGGGATATTCAATCAATAT+CGG + chr1_1:76991416-76991435 Msa0045190:intron 25.0%
!! CAGGTTCACATAAATTTTTA+AGG + chr1_1:76991541-76991560 Msa0045190:intron 25.0%
! GGAAAATGAAGATGATTTAT+GGG - chr1_1:76991628-76991647 None:intergenic 25.0%
!!! TCTGGATTTTTAGTAAGATT+TGG + chr1_1:76991997-76992016 Msa0045190:intron 25.0%
!!! TTAGTAAGATTTGGTGAATT+TGG + chr1_1:76992006-76992025 Msa0045190:intron 25.0%
! AACTCAATCAAACTTAAAGA+TGG - chr1_1:76992237-76992256 None:intergenic 25.0%
! AATGTATTGTCTTACGTATT+AGG + chr1_1:76992475-76992494 Msa0045190:intron 25.0%
!!! ATGACTCTGAAATTTTGAAA+TGG + chr1_1:76992505-76992524 Msa0045190:intron 25.0%
!!! CCATTTTTAACATTTGAACA+TGG - chr1_1:76992640-76992659 None:intergenic 25.0%
! CCATGTTCAAATGTTAAAAA+TGG + chr1_1:76992637-76992656 Msa0045190:intron 25.0%
!!! AAAATCTTGTTTTTCCATAG+GGG - chr1_1:76992664-76992683 None:intergenic 25.0%
!!! TCATTTTGTTTAGTGCAAAA+TGG + chr1_1:76992877-76992896 Msa0045190:intron 25.0%
!!! CATTTTGTTTAGTGCAAAAT+GGG + chr1_1:76992878-76992897 Msa0045190:intron 25.0%
!! AATATAACACTCAAAAGTGT+TGG - chr1_1:76993316-76993335 None:intergenic 25.0%
!! ATAGTTTCTAAAAGCCATAT+TGG - chr1_1:76993582-76993601 None:intergenic 25.0%
!!! ATATGGCTTTTAGAAACTAT+TGG + chr1_1:76993582-76993601 Msa0045190:intron 25.0%
!!! TATGTTATTTTGTCTAGCTA+AGG + chr1_1:76993732-76993751 Msa0045190:intron 25.0%
! ATTGTCATCATTTATTGCAA+TGG - chr1_1:76993980-76993999 None:intergenic 25.0%
! ATTGCAATAAATGATGACAA+TGG + chr1_1:76993979-76993998 Msa0045190:intron 25.0%
! TTGAACTATATATGCTTTGA+TGG + chr1_1:76994106-76994125 Msa0045190:intron 25.0%
!! GTTACAATGTGTTTTCAATA+TGG + chr1_1:76994179-76994198 Msa0045190:intron 25.0%
! TCTAATGTATTTGTAGAAGA+AGG + chr1_1:76994305-76994324 Msa0045190:intron 25.0%
! CTAATGTATTTGTAGAAGAA+GGG + chr1_1:76994306-76994325 Msa0045190:intron 25.0%
! TCTCAAAAAGAAAGATATGT+CGG - chr1_1:76994530-76994549 None:intergenic 25.0%
! ATTACAGAGACTCATTTATT+CGG + chr1_1:76994634-76994653 Msa0045190:CDS 25.0%
! TCGTATTTACTTATGACATT+TGG + chr1_1:76994782-76994801 Msa0045190:intron 25.0%
! ACATAGAATTGAGAAAACAA+AGG - chr1_1:76995042-76995061 None:intergenic 25.0%
!! TTTTCTCAATTCTATGTGTT+TGG + chr1_1:76995045-76995064 Msa0045190:three_prime_UTR 25.0%
! TAAAAAGGAAGAAATTGCAA+CGG - chr1_1:76995113-76995132 None:intergenic 25.0%
TAGACCACCAAAAAATATGT+CGG + chr1_1:76990007-76990026 Msa0045190:five_prime_UTR 30.0%
GTGTAATACCACCAAAAAAT+AGG + chr1_1:76990031-76990050 Msa0045190:five_prime_UTR 30.0%
! AGATAGGGTATGACATTTTT+GGG - chr1_1:76990072-76990091 None:intergenic 30.0%
! TAGATAGGGTATGACATTTT+TGG - chr1_1:76990073-76990092 None:intergenic 30.0%
ATCACTAGTGTAGTTAGATA+GGG - chr1_1:76990087-76990106 None:intergenic 30.0%
TATCACTAGTGTAGTTAGAT+AGG - chr1_1:76990088-76990107 None:intergenic 30.0%
TATCTAACTACACTAGTGAT+AGG + chr1_1:76990087-76990106 Msa0045190:five_prime_UTR 30.0%
! GGTAGTTTGGTATTTTACTT+TGG + chr1_1:76990205-76990224 Msa0045190:five_prime_UTR 30.0%
TTAAGTGTTTCAGATGATTC+AGG + chr1_1:76990495-76990514 Msa0045190:five_prime_UTR 30.0%
TAAGTGTTTCAGATGATTCA+GGG + chr1_1:76990496-76990515 Msa0045190:five_prime_UTR 30.0%
AAACTCATAAACATACTCAG+AGG - chr1_1:76990582-76990601 None:intergenic 30.0%
AGTATGTTTATGAGTTTCCA+TGG + chr1_1:76990585-76990604 Msa0045190:intron 30.0%
ATGTGCAATAACAATTTCTC+TGG + chr1_1:76990900-76990919 Msa0045190:CDS 30.0%
TAAAATACTGACCTCATAGA+AGG - chr1_1:76991276-76991295 None:intergenic 30.0%
ATTTATGTGAACCTGCTAAT+AGG - chr1_1:76991536-76991555 None:intergenic 30.0%
AAGATGATTTATGGGAAGAT+GGG - chr1_1:76991620-76991639 None:intergenic 30.0%
GGGAAAATGAAGATGATTTA+TGG - chr1_1:76991629-76991648 None:intergenic 30.0%
CAGATTTGAAGATGGTTTAT+GGG - chr1_1:76991649-76991668 None:intergenic 30.0%
TCAGATTTGAAGATGGTTTA+TGG - chr1_1:76991650-76991669 None:intergenic 30.0%
! TTTGAGATCAGATTTGAAGA+TGG - chr1_1:76991657-76991676 None:intergenic 30.0%
TGAAAACTGATGTGATCAAA+AGG + chr1_1:76991813-76991832 Msa0045190:intron 30.0%
!! ATGATGTTTTTAACAGTGAC+TGG + chr1_1:76991860-76991879 Msa0045190:intron 30.0%
TATTGTAAACTACACATACC+AGG - chr1_1:76991925-76991944 None:intergenic 30.0%
! TGAAACTTGTCTTTTCCTTT+TGG - chr1_1:76992111-76992130 None:intergenic 30.0%
GTATTATGCTTATAGTTAGC+AGG + chr1_1:76992183-76992202 Msa0045190:intron 30.0%
CAAAAGAAACACATGTTTAC+AGG - chr1_1:76992371-76992390 None:intergenic 30.0%
TTGAAATGGATGTCTACATT+TGG + chr1_1:76992519-76992538 Msa0045190:intron 30.0%
AAAAGTAAGTTTGTATGGGA+AGG + chr1_1:76992748-76992767 Msa0045190:intron 30.0%
CAATTACATACACAACTACT+AGG - chr1_1:76993159-76993178 None:intergenic 30.0%
!! GAAAACTGTTGATTCAATCA+TGG - chr1_1:76993662-76993681 None:intergenic 30.0%
! ATGACAATGGTAAAGCTTTT+TGG + chr1_1:76993992-76994011 Msa0045190:intron 30.0%
TTATAGTACCTATATGTCGT+AGG - chr1_1:76994040-76994059 None:intergenic 30.0%
! CAGAGGTTTTACAAGATTTT+TGG + chr1_1:76994474-76994493 Msa0045190:CDS 30.0%
!!! ACAAGATTTTTGGTTGTACT+TGG + chr1_1:76994484-76994503 Msa0045190:intron 30.0%
! TTTGAGATCAGAAATATGCA+TGG + chr1_1:76994543-76994562 Msa0045190:CDS 30.0%
! AGTAAATGGCAGAATTTTGT+GGG - chr1_1:76994684-76994703 None:intergenic 30.0%
! AACAGAAACTAAATTGGCTT+GGG + chr1_1:76994829-76994848 Msa0045190:intron 30.0%
! TGAGATTTTCTCCAGAATTT+AGG + chr1_1:76995010-76995029 Msa0045190:three_prime_UTR 30.0%
AAAGGATTAAGCCTAAATTC+TGG - chr1_1:76995024-76995043 None:intergenic 30.0%
AGACCACCAAAAAATATGTC+GGG + chr1_1:76990008-76990027 Msa0045190:five_prime_UTR 35.0%
!!! TTACACCCCGACATATTTTT+TGG - chr1_1:76990017-76990036 None:intergenic 35.0%
AAATCATTTGGGTAAAGAGC+AGG + chr1_1:76990237-76990256 Msa0045190:five_prime_UTR 35.0%
AACATACTCAGAGGAGAAAT+AGG - chr1_1:76990573-76990592 None:intergenic 35.0%
TCTCTGGTCAAAACTTTGAT+CGG + chr1_1:76990916-76990935 Msa0045190:CDS 35.0%
TTGTCCATATAATTGGTGTG+TGG + chr1_1:76991038-76991057 Msa0045190:intron 35.0%
CAAACCACACACCAATTATA+TGG - chr1_1:76991045-76991064 None:intergenic 35.0%
CATATAATTGGTGTGTGGTT+TGG + chr1_1:76991043-76991062 Msa0045190:intron 35.0%
! AAATTTTCAAATTGGGGGGT+TGG + chr1_1:76991087-76991106 Msa0045190:intron 35.0%
GAAGATGATTTATGGGAAGA+TGG - chr1_1:76991621-76991640 None:intergenic 35.0%
ATCTTGCCTGGGTTTAAAAA+CGG + chr1_1:76991700-76991719 Msa0045190:CDS 35.0%
CAAAAGGATTGTAGTTTCGA+TGG + chr1_1:76991829-76991848 Msa0045190:intron 35.0%
TAAACTACACATACCAGGAT+GGG - chr1_1:76991920-76991939 None:intergenic 35.0%
! CTTTTGGCATAAAGCTGAAT+CGG - chr1_1:76992095-76992114 None:intergenic 35.0%
! ACAAAATATCTAGCTCGAAG+AGG - chr1_1:76992414-76992433 None:intergenic 35.0%
TGAAGCATAAAAGCAGTGTT+GGG - chr1_1:76992450-76992469 None:intergenic 35.0%
TTGAAGCATAAAAGCAGTGT+TGG - chr1_1:76992451-76992470 None:intergenic 35.0%
TCATCTCATTATCAGAGTCA+GGG + chr1_1:76992593-76992612 Msa0045190:intron 35.0%
ATAGAATGCACTTGAGTCAT+CGG - chr1_1:76993236-76993255 None:intergenic 35.0%
GATTAAAAGCCTTGAAGAGA+TGG + chr1_1:76993526-76993545 Msa0045190:intron 35.0%
TCTTTAACTCCATCTCTTCA+AGG - chr1_1:76993538-76993557 None:intergenic 35.0%
GATTGAACAACATCATGTCA+TGG + chr1_1:76993606-76993625 Msa0045190:intron 35.0%
!! AACTGTTGATTCAATCATGG+AGG - chr1_1:76993659-76993678 None:intergenic 35.0%
TTTGTCTAGCTAAGGCAATT+AGG + chr1_1:76993740-76993759 Msa0045190:intron 35.0%
ATTAGGAGAGGAGTAATATG+TGG + chr1_1:76993757-76993776 Msa0045190:intron 35.0%
GTTTGACACCACTAATATAC+AGG + chr1_1:76993913-76993932 Msa0045190:intron 35.0%
TTGGTTCACCTGTATATTAG+TGG - chr1_1:76993924-76993943 None:intergenic 35.0%
! ACAATGGTAAAGCTTTTTGG+AGG + chr1_1:76993995-76994014 Msa0045190:intron 35.0%
CAATAACACCTACGACATAT+AGG + chr1_1:76994029-76994048 Msa0045190:intron 35.0%
GGATCACGTATCATAACAAA+AGG - chr1_1:76994378-76994397 None:intergenic 35.0%
TCCAAACTATAACGAGATTG+AGG + chr1_1:76994395-76994414 Msa0045190:CDS 35.0%
ACCTCAATCTCGTTATAGTT+TGG - chr1_1:76994399-76994418 None:intergenic 35.0%
AGTTGAAAAGAAGGATGGAA+AGG + chr1_1:76994422-76994441 Msa0045190:CDS 35.0%
ATTTAGCAGCAGCAATTTCT+GGG - chr1_1:76994601-76994620 None:intergenic 35.0%
ATTGCTGCTGCTAAATCAAA+AGG + chr1_1:76994605-76994624 Msa0045190:CDS 35.0%
AGAGACTCATTTATTCGGTA+TGG + chr1_1:76994639-76994658 Msa0045190:CDS 35.0%
! CAGTAAATGGCAGAATTTTG+TGG - chr1_1:76994685-76994704 None:intergenic 35.0%
! CACAAAATTCTGCCATTTAC+TGG + chr1_1:76994683-76994702 Msa0045190:CDS 35.0%
GTTAATTACCACAAAGATGC+TGG + chr1_1:76994729-76994748 Msa0045190:intron 35.0%
GAACAGAAACTAAATTGGCT+TGG + chr1_1:76994828-76994847 Msa0045190:intron 35.0%
! TTGACTGTTGTTGATTACCT+TGG + chr1_1:76994888-76994907 Msa0045190:CDS 35.0%
TTGATTACCTTGGTTACACT+TGG + chr1_1:76994898-76994917 Msa0045190:CDS 35.0%
GACCACCAAAAAATATGTCG+GGG + chr1_1:76990009-76990028 Msa0045190:five_prime_UTR 40.0%
!!! GTGTTCGTCCTATTTTTTGG+TGG - chr1_1:76990042-76990061 None:intergenic 40.0%
!!! TGGGTGTTCGTCCTATTTTT+TGG - chr1_1:76990045-76990064 None:intergenic 40.0%
!!! TATGACATTTTTGGGTCGGT+GGG - chr1_1:76990064-76990083 None:intergenic 40.0%
!!! AGGGTATGACATTTTTGGGT+CGG - chr1_1:76990068-76990087 None:intergenic 40.0%
ACACTAGTGATAGGTCATGA+TGG + chr1_1:76990096-76990115 Msa0045190:five_prime_UTR 40.0%
TAACGCATGTTAACATGCGT+AGG + chr1_1:76990182-76990201 Msa0045190:five_prime_UTR 40.0%
AACGCATGTTAACATGCGTA+GGG + chr1_1:76990183-76990202 Msa0045190:five_prime_UTR 40.0%
TGGGAATGAGCGAAATCATT+TGG + chr1_1:76990225-76990244 Msa0045190:five_prime_UTR 40.0%
GGGAATGAGCGAAATCATTT+GGG + chr1_1:76990226-76990245 Msa0045190:five_prime_UTR 40.0%
AGAAAAGGGGGACTAAAATG+AGG - chr1_1:76990269-76990288 None:intergenic 40.0%
ACGTGAAGGGAATGAGAAAA+GGG - chr1_1:76990283-76990302 None:intergenic 40.0%
AACGTGAAGGGAATGAGAAA+AGG - chr1_1:76990284-76990303 None:intergenic 40.0%
AAAGTATGGAAGAGAGGAGA+AGG - chr1_1:76990396-76990415 None:intergenic 40.0%
ACTCAGAGGAGAAATAGGAT+TGG - chr1_1:76990568-76990587 None:intergenic 40.0%
TTGATGGGAATGTGAGCTTT+GGG + chr1_1:76990689-76990708 Msa0045190:five_prime_UTR 40.0%
TGAAGTCGATGCTTGAACAA+AGG + chr1_1:76990807-76990826 Msa0045190:intron 40.0%
GCTTGAACAAAGGTGAAACA+TGG + chr1_1:76990817-76990836 Msa0045190:five_prime_UTR 40.0%
TGAACAAAGGTGAAACATGG+AGG + chr1_1:76990820-76990839 Msa0045190:five_prime_UTR 40.0%
!! ACGGATTTGATTTTGACGCA+AGG + chr1_1:76990865-76990884 Msa0045190:five_prime_UTR 40.0%
!! CGGATTTGATTTTGACGCAA+GGG + chr1_1:76990866-76990885 Msa0045190:five_prime_UTR 40.0%
!! GGATTTGATTTTGACGCAAG+GGG + chr1_1:76990867-76990886 Msa0045190:five_prime_UTR 40.0%
TAGAAGGTTTATGCAGCAGT+TGG + chr1_1:76991216-76991235 Msa0045190:intron 40.0%
AGAAGGTTTATGCAGCAGTT+GGG + chr1_1:76991217-76991236 Msa0045190:intron 40.0%
!!! TTGTTTTAGCGCCTTCTATG+AGG + chr1_1:76991262-76991281 Msa0045190:intron 40.0%
TACTTTCAGTCTCCGTTAAG+TGG + chr1_1:76991454-76991473 Msa0045190:intron 40.0%
ACTTTCAGTCTCCGTTAAGT+GGG + chr1_1:76991455-76991474 Msa0045190:intron 40.0%
CCAAGCAGCAAAATCACATA+AGG - chr1_1:76991500-76991519 None:intergenic 40.0%
! CCTTATGTGATTTTGCTGCT+TGG + chr1_1:76991497-76991516 Msa0045190:intron 40.0%
!! TTTTGCTGCTTGGAGTTTTG+TGG + chr1_1:76991507-76991526 Msa0045190:intron 40.0%
! TTTTGTGGTTGCCTATTAGC+AGG + chr1_1:76991522-76991541 Msa0045190:intron 40.0%
TTTAAACCCAGGCAAGATGA+TGG - chr1_1:76991698-76991717 None:intergenic 40.0%
TAACAGTGACTGGTGTTTAG+CGG + chr1_1:76991870-76991889 Msa0045190:intron 40.0%
GTAAACTACACATACCAGGA+TGG - chr1_1:76991921-76991940 None:intergenic 40.0%
! CGATTCAGCTTTATGCCAAA+AGG + chr1_1:76992093-76992112 Msa0045190:intron 40.0%
TATGCTTATAGTTAGCAGGC+AGG + chr1_1:76992187-76992206 Msa0045190:intron 40.0%
! ATATCTAGCTCGAAGAGGAT+AGG - chr1_1:76992409-76992428 None:intergenic 40.0%
! AAAGCAGTGTTGGGCAAAAT+GGG - chr1_1:76992441-76992460 None:intergenic 40.0%
! AAAAGCAGTGTTGGGCAAAA+TGG - chr1_1:76992442-76992461 None:intergenic 40.0%
CTCATCTCATTATCAGAGTC+AGG + chr1_1:76992592-76992611 Msa0045190:intron 40.0%
ATGTTAAAAATGGGCCCCTA+TGG + chr1_1:76992647-76992666 Msa0045190:intron 40.0%
CTTGGAATTCATATCCTCGT+TGG - chr1_1:76993490-76993509 None:intergenic 40.0%
ACGAGGATATGAATTCCAAG+AGG + chr1_1:76993490-76993509 Msa0045190:intron 40.0%
! CTTTGTCGACTACACCAATA+TGG + chr1_1:76993565-76993584 Msa0045190:intron 40.0%
GTCATGGCTCAAATTCAATC+TGG + chr1_1:76993622-76993641 Msa0045190:intron 40.0%
AAAAGATGAAAGGGACTCAC+AGG - chr1_1:76993698-76993717 None:intergenic 40.0%
!! TAAAGCTTTTTGGAGGAAGC+AGG + chr1_1:76994002-76994021 Msa0045190:intron 40.0%
GTGTTGCATGCAGAAAGAAA+TGG + chr1_1:76994243-76994262 Msa0045190:intron 40.0%
TGAGGTTGCAGTTGAAAAGA+AGG + chr1_1:76994413-76994432 Msa0045190:CDS 40.0%
GTTGCAGTTGAAAAGAAGGA+TGG + chr1_1:76994417-76994436 Msa0045190:CDS 40.0%
TTTAGCAGCAGCAATTTCTG+GGG - chr1_1:76994600-76994619 None:intergenic 40.0%
GATTTAGCAGCAGCAATTTC+TGG - chr1_1:76994602-76994621 None:intergenic 40.0%
! ATTCTGCCATTTACTGGTGA+AGG + chr1_1:76994689-76994708 Msa0045190:CDS 40.0%
AACAGTCAATTCAGTCCTCT+CGG - chr1_1:76994877-76994896 None:intergenic 40.0%
TCAGTTTCCAAGTGTAACCA+AGG - chr1_1:76994908-76994927 None:intergenic 40.0%
TTCATCGTGGCAGAAATTCA+TGG - chr1_1:76994931-76994950 None:intergenic 40.0%
ATGAATTTCTGCCACGATGA+AGG + chr1_1:76994930-76994949 Msa0045190:CDS 40.0%
ATTGCAACGGAAATGAGTAC+AGG - chr1_1:76995100-76995119 None:intergenic 40.0%
!!! CACCCCGACATATTTTTTGG+TGG - chr1_1:76990014-76990033 None:intergenic 45.0%
!!! GTATGACATTTTTGGGTCGG+TGG - chr1_1:76990065-76990084 None:intergenic 45.0%
ACGCATGTTAACATGCGTAG+GGG + chr1_1:76990184-76990203 Msa0045190:five_prime_UTR 45.0%
TAACATGCGTAGGGGTAGTT+TGG + chr1_1:76990192-76990211 Msa0045190:five_prime_UTR 45.0%
GTGAAGGGAATGAGAAAAGG+GGG - chr1_1:76990281-76990300 None:intergenic 45.0%
CGTGAAGGGAATGAGAAAAG+GGG - chr1_1:76990282-76990301 None:intergenic 45.0%
AGACAGAGAGAGAACGTGAA+GGG - chr1_1:76990296-76990315 None:intergenic 45.0%
AAGACAGAGAGAGAACGTGA+AGG - chr1_1:76990297-76990316 None:intergenic 45.0%
AGAAGAGGATGAAGGGTTGA+GGG - chr1_1:76990327-76990346 None:intergenic 45.0%
! ATGGTGGAGAAGAGGATGAA+GGG - chr1_1:76990334-76990353 None:intergenic 45.0%
! GTTGATGGGAATGTGAGCTT+TGG + chr1_1:76990688-76990707 Msa0045190:five_prime_UTR 45.0%
!! AATGTGAGCTTTGGGTTTGC+AGG + chr1_1:76990697-76990716 Msa0045190:five_prime_UTR 45.0%
TGAACGAACGAGTGGAATGA+CGG + chr1_1:76990846-76990865 Msa0045190:five_prime_UTR 45.0%
! CGCATCACTTTGATAGCTTG+CGG - chr1_1:76990948-76990967 None:intergenic 45.0%
CGCAAGCTATCAAAGTGATG+CGG + chr1_1:76990946-76990965 Msa0045190:CDS 45.0%
AAGTTGAAGATTCCGTTGGC+TGG + chr1_1:76990969-76990988 Msa0045190:CDS 45.0%
GAAGGTTTATGCAGCAGTTG+GGG + chr1_1:76991218-76991237 Msa0045190:intron 45.0%
CAGTAGCTGATCCCACTTAA+CGG - chr1_1:76991469-76991488 None:intergenic 45.0%
GACAAACCATCATCTTGCCT+GGG + chr1_1:76991689-76991708 Msa0045190:CDS 45.0%
!! GAAGCTCCGTTTTTAAACCC+AGG - chr1_1:76991709-76991728 None:intergenic 45.0%
AAACGGAGCTTCCTTCTGTT+CGG + chr1_1:76991717-76991736 Msa0045190:CDS 45.0%
ACAGGATACCAAATCGAAGG+AGG - chr1_1:76991766-76991785 None:intergenic 45.0%
CCAACAGGATACCAAATCGA+AGG - chr1_1:76991769-76991788 None:intergenic 45.0%
!! CCTTCGATTTGGTATCCTGT+TGG + chr1_1:76991766-76991785 Msa0045190:CDS 45.0%
ATTGCACGAGCATAACCAAC+AGG - chr1_1:76991784-76991803 None:intergenic 45.0%
! TGTTGGTTATGCTCGTGCAA+TGG + chr1_1:76991783-76991802 Msa0045190:intron 45.0%
TTTAGCGGTGTACTCAAGGA+GGG + chr1_1:76991885-76991904 Msa0045190:intron 45.0%
GGTTGTGATTGAGTGCATGT+CGG + chr1_1:76992027-76992046 Msa0045190:intron 45.0%
! AACATGGCCTCCGATTTTAC+CGG - chr1_1:76992624-76992643 None:intergenic 45.0%
CTGATCAGAGTACGTCTCAA+CGG + chr1_1:76993413-76993432 Msa0045190:intron 45.0%
! ATTGTTCGCCGACTATTTGC+CGG - chr1_1:76993462-76993481 None:intergenic 45.0%
GGAATTCATATCCTCGTTGG+TGG - chr1_1:76993487-76993506 None:intergenic 45.0%
ACTCACAGGCATCAACAACT+TGG - chr1_1:76993684-76993703 None:intergenic 45.0%
CTAGCTAAGGCAATTAGGAG+AGG + chr1_1:76993745-76993764 Msa0045190:intron 45.0%
GGAGAGGAGTAATATGTGGT+TGG + chr1_1:76993761-76993780 Msa0045190:intron 45.0%
! AACACACGAGGAAAGCATGT+TGG - chr1_1:76994339-76994358 None:intergenic 45.0%
ACATGCTTTCCTCGTGTGTT+TGG + chr1_1:76994339-76994358 Msa0045190:CDS 45.0%
ACTTCTAAGCCAAACACACG+AGG - chr1_1:76994351-76994370 None:intergenic 45.0%
GATCAGAAATATGCATGGCC+AGG + chr1_1:76994548-76994567 Msa0045190:CDS 45.0%
AAATATGCATGGCCAGGAGT+TGG + chr1_1:76994554-76994573 Msa0045190:CDS 45.0%
TCAGCTCCTTCACCAGTAAA+TGG - chr1_1:76994698-76994717 None:intergenic 45.0%
TTCACTCACCAGCATCTTTG+TGG - chr1_1:76994740-76994759 None:intergenic 45.0%
ACAGTCAATTCAGTCCTCTC+GGG - chr1_1:76994876-76994895 None:intergenic 45.0%
GACTGCAGCTTACAACACAT+AGG - chr1_1:76995078-76995097 None:intergenic 45.0%
!!! AATTTTAATATTAAAACAAT+TGG - chr1_1:76992806-76992825 None:intergenic 5.0%
!!! ATTGTTTTAATATTAAAATT+TGG + chr1_1:76992806-76992825 Msa0045190:intron 5.0%
!!! TTGTTTTAATATTAAAATTT+GGG + chr1_1:76992807-76992826 Msa0045190:intron 5.0%
!! AAAAAATACTAATTATTTAA+CGG + chr1_1:76993029-76993048 Msa0045190:intron 5.0%
!! TATTTAAAAAAAAAAAATTG+AGG + chr1_1:76993332-76993351 Msa0045190:intron 5.0%
GTAGCGTGACTTAAGTCACG+TGG - chr1_1:76990147-76990166 None:intergenic 50.0%
GAAGAGGATGAAGGGTTGAG+GGG - chr1_1:76990326-76990345 None:intergenic 50.0%
GAGAAGAGGATGAAGGGTTG+AGG - chr1_1:76990328-76990347 None:intergenic 50.0%
!! GATGGTGGAGAAGAGGATGA+AGG - chr1_1:76990335-76990354 None:intergenic 50.0%
GGAGGAAATGAACGAACGAG+TGG + chr1_1:76990838-76990857 Msa0045190:five_prime_UTR 50.0%
GCGGAAGTTGAAGATTCCGT+TGG + chr1_1:76990965-76990984 Msa0045190:CDS 50.0%
CGTTAAGTGGGATCAGCTAC+TGG + chr1_1:76991467-76991486 Msa0045190:intron 50.0%
CGACAAACCATCATCTTGCC+TGG + chr1_1:76991688-76991707 Msa0045190:CDS 50.0%
AACGGAGCTTCCTTCTGTTC+GGG + chr1_1:76991718-76991737 Msa0045190:CDS 50.0%
GGATACCAAATCGAAGGAGG+TGG - chr1_1:76991763-76991782 None:intergenic 50.0%
GGTGTTTAGCGGTGTACTCA+AGG + chr1_1:76991881-76991900 Msa0045190:intron 50.0%
GTTTAGCGGTGTACTCAAGG+AGG + chr1_1:76991884-76991903 Msa0045190:intron 50.0%
CACTTGAGTCATCGGTCTTG+AGG - chr1_1:76993228-76993247 None:intergenic 50.0%
TTGAGGCTCCTAAGATTGCG+AGG + chr1_1:76993349-76993368 Msa0045190:intron 50.0%
CGTTGAGACGTACTCTGATC+AGG - chr1_1:76993415-76993434 None:intergenic 50.0%
AGAGTACGTCTCAACGGTGA+CGG + chr1_1:76993419-76993438 Msa0045190:intron 50.0%
GCGAACAATTACCACCAACG+AGG + chr1_1:76993473-76993492 Msa0045190:intron 50.0%
TCGTCTTCACACAGTCCTCT+TGG - chr1_1:76993508-76993527 None:intergenic 50.0%
! GGAAAGGTGTACTTCGCAGA+TGG + chr1_1:76994438-76994457 Msa0045190:CDS 50.0%
ATGGCTGGGAGATCATTCAG+AGG + chr1_1:76994457-76994476 Msa0045190:CDS 50.0%
ATTGAGGATAGGCCAACTCC+TGG - chr1_1:76994569-76994588 None:intergenic 50.0%
!! GGGTGGATTGGATTGAGGAT+AGG - chr1_1:76994580-76994599 None:intergenic 50.0%
!! TTCTGGGGTGGATTGGATTG+AGG - chr1_1:76994585-76994604 None:intergenic 50.0%
!! CAGCAATTTCTGGGGTGGAT+TGG - chr1_1:76994592-76994611 None:intergenic 50.0%
AGTCAATTCAGTCCTCTCGG+GGG - chr1_1:76994874-76994893 None:intergenic 50.0%
CAGTCAATTCAGTCCTCTCG+GGG - chr1_1:76994875-76994894 None:intergenic 50.0%
!! ATGGGATGATGGTGGACGGT+GGG - chr1_1:76990357-76990376 None:intergenic 55.0%
!! TGATGGTGGGGATGGGATGA+TGG - chr1_1:76990368-76990387 None:intergenic 55.0%
! GAGAAGGACGAGTGATGGTG+GGG - chr1_1:76990380-76990399 None:intergenic 55.0%
GGAGAAGGACGAGTGATGGT+GGG - chr1_1:76990381-76990400 None:intergenic 55.0%
AGGAGAAGGACGAGTGATGG+TGG - chr1_1:76990382-76990401 None:intergenic 55.0%
GAGAGGAGAAGGACGAGTGA+TGG - chr1_1:76990385-76990404 None:intergenic 55.0%
TTCAGGGCAGCAGATGCAGT+AGG + chr1_1:76990512-76990531 Msa0045190:five_prime_UTR 55.0%
TCAGGGCAGCAGATGCAGTA+GGG + chr1_1:76990513-76990532 Msa0045190:five_prime_UTR 55.0%
! CTGTCGATTGGACCAGCCAA+CGG - chr1_1:76990984-76991003 None:intergenic 55.0%
AGGTCGTCGTACCTGTCGAT+TGG - chr1_1:76990996-76991015 None:intergenic 55.0%
ACGGAGCTTCCTTCTGTTCG+GGG + chr1_1:76991719-76991738 Msa0045190:CDS 55.0%
GAGCTCCACCTCCTTCGATT+TGG + chr1_1:76991755-76991774 Msa0045190:CDS 55.0%
AGGGTCACTTCAACCCATCC+TGG + chr1_1:76991904-76991923 Msa0045190:intron 55.0%
TATCAGAGTCAGGGCCGTTC+CGG + chr1_1:76992602-76992621 Msa0045190:intron 55.0%
CAGGGCCGTTCCGGTAAAAT+CGG + chr1_1:76992611-76992630 Msa0045190:intron 55.0%
! GGCCTCCGATTTTACCGGAA+CGG - chr1_1:76992619-76992638 None:intergenic 55.0%
GGCATGTGCAAGGTGAGCTA+CGG - chr1_1:76993382-76993401 None:intergenic 55.0%
AGCTCACCTTGCACATGCCA+AGG + chr1_1:76993383-76993402 Msa0045190:intron 55.0%
GCTCACCTTGCACATGCCAA+GGG + chr1_1:76993384-76993403 Msa0045190:intron 55.0%
AGACGTACTCTGATCAGGCC+CGG - chr1_1:76993410-76993429 None:intergenic 55.0%
!! CTGTGGTGCCGGCAAATAGT+CGG + chr1_1:76993451-76993470 Msa0045190:intron 55.0%
AGGTGTACTTCGCAGATGGC+TGG + chr1_1:76994442-76994461 Msa0045190:CDS 55.0%
GGTGTACTTCGCAGATGGCT+GGG + chr1_1:76994443-76994462 Msa0045190:CDS 55.0%
! AGCAGCAGCAATTTCTGGGG+TGG - chr1_1:76994597-76994616 None:intergenic 55.0%
GTCAATTCAGTCCTCTCGGG+GGG - chr1_1:76994873-76994892 None:intergenic 55.0%
CACACGAGACACCTTCATCG+TGG - chr1_1:76994944-76994963 None:intergenic 55.0%
!! ACGGTGGGATGGTGGAGAAG+AGG - chr1_1:76990342-76990361 None:intergenic 60.0%
!! GATGATGGTGGACGGTGGGA+TGG - chr1_1:76990353-76990372 None:intergenic 60.0%
!! GATGGGATGATGGTGGACGG+TGG - chr1_1:76990358-76990377 None:intergenic 60.0%
!! GGGGATGGGATGATGGTGGA+CGG - chr1_1:76990361-76990380 None:intergenic 60.0%
! TGGTGGGGATGGGATGATGG+TGG - chr1_1:76990365-76990384 None:intergenic 60.0%
!! GGACGAGTGATGGTGGGGAT+GGG - chr1_1:76990375-76990394 None:intergenic 60.0%
!! AGGACGAGTGATGGTGGGGA+TGG - chr1_1:76990376-76990395 None:intergenic 60.0%
CAGGGCAGCAGATGCAGTAG+GGG + chr1_1:76990514-76990533 Msa0045190:five_prime_UTR 60.0%
AGGGCAGCAGATGCAGTAGG+GGG + chr1_1:76990515-76990534 Msa0045190:five_prime_UTR 60.0%
! CGTTGGCTGGTCCAATCGAC+AGG + chr1_1:76990982-76991001 Msa0045190:CDS 60.0%
CCTTCTGTTCGGGGTCCTTC+CGG + chr1_1:76991728-76991747 Msa0045190:CDS 60.0%
AAGGAGGTGGAGCTCGAAGC+CGG - chr1_1:76991750-76991769 None:intergenic 60.0%
GGCCGTTCCGGTAAAATCGG+AGG + chr1_1:76992614-76992633 Msa0045190:intron 60.0%
GCTCCTAAGATTGCGAGGCC+CGG + chr1_1:76993354-76993373 Msa0045190:intron 60.0%
TGCAAGGTGAGCTACGGTGC+CGG - chr1_1:76993376-76993395 None:intergenic 60.0%
ACCTTGCACATGCCAAGGGC+CGG + chr1_1:76993388-76993407 Msa0045190:intron 60.0%
TCTCGGGGGGAAATGCAGCT+TGG - chr1_1:76994860-76994879 None:intergenic 60.0%
AAGCTGCATTTCCCCCCGAG+AGG + chr1_1:76994859-76994878 Msa0045190:CDS 60.0%
!! GATGGTGGACGGTGGGATGG+TGG - chr1_1:76990350-76990369 None:intergenic 65.0%
CCGGAAGGACCCCGAACAGA+AGG - chr1_1:76991731-76991750 None:intergenic 65.0%
AGGTGGAGCTCGAAGCCGGA+AGG - chr1_1:76991746-76991765 None:intergenic 65.0%
GTGCCGGGCCTCGCAATCTT+AGG - chr1_1:76993360-76993379 None:intergenic 65.0%
GCAAGGTGAGCTACGGTGCC+GGG - chr1_1:76993375-76993394 None:intergenic 65.0%
CCTTGCACATGCCAAGGGCC+GGG + chr1_1:76993389-76993408 Msa0045190:intron 65.0%
! GTCTCAACGGTGACGGCGAG+CGG + chr1_1:76993426-76993445 Msa0045190:intron 65.0%
CCCGGCCCTTGGCATGTGCA+AGG - chr1_1:76993392-76993411 None:intergenic 70.0%
CTCTGATCAGGCCCGGCCCT+TGG - chr1_1:76993403-76993422 None:intergenic 70.0%
! GGTGACGGCGAGCGGTTCTG+TGG + chr1_1:76993434-76993453 Msa0045190:intron 70.0%
GGCGAGCGGTTCTGTGGTGC+CGG + chr1_1:76993440-76993459 Msa0045190:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 76989908 76995248 76989908 ID=Msa0045190;Name=Msa0045190
chr1_1 mRNA 76989908 76995248 76989908 ID=Msa0045190-mRNA-1;Parent=Msa0045190;Name=Msa0045190-mRNA-1;_AED=0.30;_eAED=0.30;_QI=803|0.33|0.57|1|0.16|0|7|277|243
chr1_1 exon 76989908 76990585 76989908 ID=Msa0045190-mRNA-1:exon:26283;Parent=Msa0045190-mRNA-1
chr1_1 exon 76990682 76990718 76990682 ID=Msa0045190-mRNA-1:exon:26284;Parent=Msa0045190-mRNA-1
chr1_1 exon 76990812 76991003 76990812 ID=Msa0045190-mRNA-1:exon:26285;Parent=Msa0045190-mRNA-1
chr1_1 exon 76991688 76991787 76991688 ID=Msa0045190-mRNA-1:exon:26286;Parent=Msa0045190-mRNA-1
chr1_1 exon 76994321 76994495 76994321 ID=Msa0045190-mRNA-1:exon:26287;Parent=Msa0045190-mRNA-1
chr1_1 exon 76994514 76994728 76994514 ID=Msa0045190-mRNA-1:exon:26288;Parent=Msa0045190-mRNA-1
chr1_1 exon 76994834 76995248 76994834 ID=Msa0045190-mRNA-1:exon:26289;Parent=Msa0045190-mRNA-1
chr1_1 five_prime_UTR 76989908 76990585 76989908 ID=Msa0045190-mRNA-1:five_prime_utr;Parent=Msa0045190-mRNA-1
chr1_1 five_prime_UTR 76990682 76990718 76990682 ID=Msa0045190-mRNA-1:five_prime_utr;Parent=Msa0045190-mRNA-1
chr1_1 five_prime_UTR 76990812 76990899 76990812 ID=Msa0045190-mRNA-1:five_prime_utr;Parent=Msa0045190-mRNA-1
chr1_1 CDS 76990900 76991003 76990900 ID=Msa0045190-mRNA-1:cds;Parent=Msa0045190-mRNA-1
chr1_1 CDS 76991688 76991787 76991688 ID=Msa0045190-mRNA-1:cds;Parent=Msa0045190-mRNA-1
chr1_1 CDS 76994321 76994495 76994321 ID=Msa0045190-mRNA-1:cds;Parent=Msa0045190-mRNA-1
chr1_1 CDS 76994514 76994728 76994514 ID=Msa0045190-mRNA-1:cds;Parent=Msa0045190-mRNA-1
chr1_1 CDS 76994834 76994971 76994834 ID=Msa0045190-mRNA-1:cds;Parent=Msa0045190-mRNA-1
chr1_1 three_prime_UTR 76994972 76995248 76994972 ID=Msa0045190-mRNA-1:three_prime_utr;Parent=Msa0045190-mRNA-1
Gene Sequence

>Msa0045190

ATGTGCAATAACAATTTCTCTGGTCAAAACTTTGATCGGCTGATGCCGCAAGCTATCAAAGTGATGCGGAAGTTGAAGATTCCGTTGGCTGGTCCAATCGACAGCGACAAACCATCATCTTGCCTGGGTTTAAAAACGGAGCTTCCTTCTGTTCGGGGTCCTTCCGGCTTCGAGCTCCACCTCCTTCGATTTGGTATCCTGTTGAAGAAGGGAAGACTACCAACATGCTTTCCTCGTGTGTTTGGCTTAGAAGTCGCACCTTTTGTTATGATACGTGATCCAAACTATAACGAGATTGAGGTTGCAGTTGAAAAGAAGGATGGAAAGGTGTACTTCGCAGATGGCTGGGAGATCATTCAGAGGTTTTACAAGATTTTTGTTGTATATGCAAACCGACATATCTTTCTTTTTGAGATCAGAAATATGCATGGCCAGGAGTTGGCCTATCCTCAATCCAATCCACCCCAGAAATTGCTGCTGCTAAATCAAAAGGATTCTGATTACAGAGACTCATTTATTCGGTATGGTTATAATGCTCATTTTCTACCCACAAAATTCTGCCATTTACTGGTGAAGGAGCTGAGTGATGCTGATAAACTAAATTGGCTTGGGTTCTGCCAAGCTGCATTTCCCCCCGAGAGGACTGAATTGACTGTTGTTGATTACCTTGGTTACACTTGGAAACTGACCATGAATTTCTGCCACGATGAAGGTGTCTCGTGTGTACTTTGA
Protein sequence

>Msa0045190

MCNNNFSGQNFDRLMPQAIKVMRKLKIPLAGPIDSDKPSSCLGLKTELPSVRGPSGFELHLLRFGILLKKGRLPTCFPRVFGLEVAPFVMIRDPNYNEIEVAVEKKDGKVYFADGWEIIQRFYKIFVVYANRHIFLFEIRNMHGQELAYPQSNPPQKLLLLNQKDSDYRDSFIRYGYNAHFLPTKFCHLLVKELSDADKLNWLGFCQAAFPPERTELTVVDYLGYTWKLTMNFCHDEGVSCVL*