AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0302090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0302090 MtrunA17_Chr7g0230671 93.514 185 8 1 1 185 1 181 3.35e-115 347
Msa0302090 MtrunA17_Chr4g0012061 53.723 188 82 3 2 185 7 193 6.70e-52 181
Msa0302090 MtrunA17_Chr7g0270371 91.781 73 6 0 203 275 240 312 1.34e-40 145
Msa0302090 MtrunA17_Chr1g0194201 89.041 73 8 0 203 275 240 312 1.48e-39 142
Msa0302090 MtrunA17_Chr7g0246591 86.301 73 10 0 203 275 306 378 7.11e-39 142
Msa0302090 MtrunA17_Chr1g0193081 87.671 73 9 0 203 275 240 312 1.17e-38 140
Msa0302090 MtrunA17_Chr2g0277011 87.671 73 9 0 203 275 255 327 3.59e-38 139
Msa0302090 MtrunA17_Chr2g0320011 86.301 73 10 0 203 275 253 325 2.89e-37 137
Msa0302090 MtrunA17_Chr8g0350311 82.192 73 13 0 203 275 304 376 2.10e-36 135
Msa0302090 MtrunA17_Chr2g0284091 80.822 73 14 0 203 275 205 277 4.24e-36 133
Msa0302090 MtrunA17_Chr4g0030241 41.026 78 42 1 203 276 66 143 2.21e-16 75.5
Msa0302090 MtrunA17_Chr7g0273601 54.237 59 27 0 203 261 272 330 7.41e-16 77.8
Msa0302090 MtrunA17_Chr5g0396361 49.153 59 30 0 203 261 305 363 1.26e-15 77.0
Msa0302090 MtrunA17_Chr4g0051261 39.560 91 49 2 203 293 168 252 1.57e-15 75.5
Msa0302090 MtrunA17_Chr2g0293491 40.000 90 48 2 203 292 168 251 2.22e-15 74.7
Msa0302090 MtrunA17_Chr4g0066691 52.542 59 28 0 203 261 269 327 2.25e-15 76.3
Msa0302090 MtrunA17_Chr4g0002001 50.000 60 30 0 203 262 185 244 2.60e-15 74.7
Msa0302090 MtrunA17_Chr1g0191221 52.542 59 28 0 203 261 287 345 2.71e-15 75.9
Msa0302090 MtrunA17_Chr2g0286421 50.847 59 29 0 203 261 267 325 7.31e-15 74.7
Msa0302090 MtrunA17_Chr8g0377071 52.632 57 27 0 203 259 549 605 8.43e-15 74.7
Msa0302090 MtrunA17_Chr8g0385971 48.571 70 35 1 203 271 255 324 1.06e-14 74.3
Msa0302090 MtrunA17_Chr3g0122781 52.632 57 27 0 203 259 580 636 1.19e-14 74.3
Msa0302090 MtrunA17_Chr6g0465161 41.489 94 53 2 93 185 78 170 1.36e-14 73.9
Msa0302090 MtrunA17_Chr4g0045841 41.791 67 39 0 203 269 220 286 2.47e-14 72.8
Msa0302090 MtrunA17_Chr4g0030231 47.541 61 32 0 203 263 205 265 2.79e-14 72.4
Msa0302090 MtrunA17_Chr3g0131861 52.542 59 28 0 203 261 262 320 3.22e-14 72.8
Msa0302090 MtrunA17_Chr8g0383451 36.082 97 46 2 186 266 130 226 5.45e-14 72.0
Msa0302090 MtrunA17_Chr8g0387401 37.179 78 49 0 203 280 217 294 6.21e-14 71.6
Msa0302090 MtrunA17_Chr4g0040141 45.763 59 32 0 203 261 294 352 7.41e-14 71.6
Msa0302090 MtrunA17_Chr7g0248461 51.786 56 27 0 203 258 203 258 7.48e-14 71.2
Msa0302090 MtrunA17_Chr8g0348481 51.786 56 27 0 203 258 202 257 8.34e-14 70.9
Msa0302090 MtrunA17_Chr2g0317501 47.458 59 31 0 203 261 299 357 8.47e-14 71.6
Msa0302090 MtrunA17_Chr8g0378831 38.554 83 49 1 203 283 198 280 9.56e-14 70.9
Msa0302090 MtrunA17_Chr4g0057791 50.000 56 28 0 203 258 384 439 1.10e-13 71.2
Msa0302090 MtrunA17_Chr1g0187371 45.763 59 32 0 203 261 190 248 1.37e-13 70.1
Msa0302090 MtrunA17_Chr8g0359091 55.556 63 25 2 203 263 195 256 2.06e-13 70.5
Msa0302090 MtrunA17_Chr4g0030151 44.262 61 34 0 203 263 204 264 2.09e-13 69.7
Msa0302090 MtrunA17_Chr1g0169361 31.126 151 99 2 37 185 78 225 2.10e-13 70.5
Msa0302090 MtrunA17_Chr1g0201571 47.458 59 31 0 203 261 291 349 2.37e-13 70.1
Msa0302090 MtrunA17_Chr6g0486031 43.820 89 43 2 173 261 256 337 2.39e-13 69.7
Msa0302090 MtrunA17_Chr2g0324461 45.614 57 31 0 203 259 306 362 2.69e-13 70.1
Msa0302090 MtrunA17_Chr6g0453711 47.458 59 31 0 203 261 275 333 4.05e-13 69.3
Msa0302090 MtrunA17_Chr5g0397261 40.625 64 38 0 203 266 206 269 5.61e-13 68.6
Msa0302090 MtrunA17_Chr3g0130781 39.560 91 40 2 180 262 179 262 5.62e-13 68.9
Msa0302090 MtrunA17_Chr8g0390341 47.143 70 34 1 188 257 280 346 6.56e-13 68.6
Msa0302090 MtrunA17_Chr5g0443351 52.381 63 27 2 203 263 191 252 7.80e-13 68.6
Msa0302090 MtrunA17_Chr4g0061141 40.278 72 43 0 203 274 270 341 1.15e-12 68.2
Msa0302090 MtrunA17_Chr8g0358921 45.312 64 35 0 198 261 211 274 1.18e-12 67.4
Msa0302090 MtrunA17_Chr7g0218071 44.068 59 33 0 203 261 285 343 1.38e-12 67.8
Msa0302090 MtrunA17_Chr3g0141871 43.077 65 37 0 203 267 198 262 4.62e-12 65.9
Msa0302090 MtrunA17_Chr6g0483151 45.614 57 31 0 203 259 176 232 5.74e-12 65.9
Msa0302090 MtrunA17_Chr4g0065851 52.381 63 27 2 203 263 194 255 6.30e-12 65.9
Msa0302090 MtrunA17_Chr8g0369241 53.704 54 24 1 203 256 307 359 6.39e-12 66.2
Msa0302090 MtrunA17_Chr3g0102571 42.424 66 38 0 203 268 246 311 7.22e-12 65.5
Msa0302090 MtrunA17_Chr6g0482681 50.794 63 28 2 203 263 258 319 1.26e-11 65.1
Msa0302090 MtrunA17_Chr3g0093391 44.643 56 31 0 203 258 202 257 1.42e-11 64.7
Msa0302090 MtrunA17_Chr2g0287271 50.794 63 28 2 203 263 194 255 1.70e-11 64.7
Msa0302090 MtrunA17_Chr3g0093571 44.643 56 31 0 203 258 204 259 1.78e-11 64.3
Msa0302090 MtrunA17_Chr3g0096631 49.206 63 29 2 203 263 194 255 3.80e-11 63.5
Msa0302090 MtrunA17_Chr8g0392811 50.794 63 28 2 203 263 286 347 4.06e-11 63.5
Msa0302090 MtrunA17_Chr1g0148121 36.458 96 58 1 93 185 77 172 7.39e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0302090 AT1G79600.1 68.750 112 35 0 74 185 77 188 1.17e-46 167
Msa0302090 AT5G14640.1 90.411 73 7 0 203 275 239 311 1.21e-39 143
Msa0302090 AT5G14640.2 90.411 73 7 0 203 275 239 311 1.21e-39 143
Msa0302090 AT3G05840.2 89.041 73 8 0 203 275 238 310 2.85e-39 142
Msa0302090 AT3G05840.1 89.041 73 8 0 203 275 238 310 2.85e-39 142
Msa0302090 AT5G26751.1 89.041 73 8 0 203 275 234 306 4.46e-39 142
Msa0302090 AT1G09840.11 88.732 71 8 0 203 273 121 191 8.05e-39 138
Msa0302090 AT1G57870.1 87.671 73 9 0 203 275 247 319 3.18e-38 140
Msa0302090 AT1G57870.4 87.671 73 9 0 203 275 247 319 3.18e-38 140
Msa0302090 AT1G57870.2 87.671 73 9 0 203 275 247 319 3.18e-38 140
Msa0302090 AT1G57870.3 87.671 73 9 0 203 275 247 319 4.04e-38 140
Msa0302090 AT1G09840.3 86.301 73 10 0 203 275 248 320 5.72e-38 139
Msa0302090 AT1G09840.7 86.301 73 10 0 203 275 248 320 5.72e-38 139
Msa0302090 AT1G09840.10 86.301 73 10 0 203 275 248 320 5.72e-38 139
Msa0302090 AT1G09840.6 86.301 73 10 0 203 275 248 320 5.72e-38 139
Msa0302090 AT1G09840.4 86.301 73 10 0 203 275 248 320 5.72e-38 139
Msa0302090 AT1G09840.1 86.301 73 10 0 203 275 248 320 5.72e-38 139
Msa0302090 AT1G09840.9 86.301 73 10 0 203 275 248 320 5.72e-38 139
Msa0302090 AT1G09840.5 86.301 73 10 0 203 275 248 320 5.72e-38 139
Msa0302090 AT1G09840.8 86.301 73 10 0 203 275 248 320 5.72e-38 139
Msa0302090 AT1G09840.2 86.301 73 10 0 203 275 248 320 5.72e-38 139
Msa0302090 AT1G06390.2 84.932 73 11 0 203 275 235 307 6.81e-37 136
Msa0302090 AT1G06390.1 84.932 73 11 0 203 275 235 307 6.81e-37 136
Msa0302090 AT2G30980.1 84.932 73 11 0 203 275 237 309 8.92e-37 135
Msa0302090 AT4G00720.1 80.822 73 14 0 203 275 303 375 8.99e-37 137
Msa0302090 AT4G18710.1 83.562 73 12 0 203 275 205 277 9.11e-37 135
Msa0302090 AT4G18710.2 83.099 71 12 0 203 273 199 269 1.16e-35 129
Msa0302090 AT3G61160.3 72.603 73 20 0 203 275 267 339 3.87e-32 122
Msa0302090 AT3G61160.5 72.603 73 20 0 203 275 267 339 4.21e-32 122
Msa0302090 AT3G61160.6 72.603 73 20 0 203 275 274 346 5.00e-32 122
Msa0302090 AT3G61160.1 72.603 73 20 0 203 275 267 339 1.13e-31 122
Msa0302090 AT3G61160.2 72.603 73 20 0 203 275 274 346 1.24e-31 122
Msa0302090 AT3G61160.4 72.603 73 20 0 203 275 267 339 1.41e-31 122
Msa0302090 AT3G48750.1 38.889 90 49 3 203 286 168 257 4.15e-17 80.1
Msa0302090 AT5G63370.5 34.507 142 69 3 134 259 389 522 8.43e-17 80.9
Msa0302090 AT5G63370.10 34.507 142 69 3 134 259 389 522 8.43e-17 80.9
Msa0302090 AT5G63370.9 34.266 143 70 3 134 260 255 389 1.11e-16 80.1
Msa0302090 AT2G38620.4 50.000 60 30 0 203 262 123 182 1.19e-16 78.2
Msa0302090 AT5G63370.7 34.507 142 69 3 134 259 389 522 1.34e-16 80.5
Msa0302090 AT5G63370.8 34.507 142 69 3 134 259 389 522 1.34e-16 80.5
Msa0302090 AT5G63370.4 34.507 142 69 3 134 259 389 522 1.34e-16 80.5
Msa0302090 AT5G63370.6 34.507 142 69 3 134 259 389 522 1.34e-16 80.5
Msa0302090 AT5G63370.1 34.507 142 69 3 134 259 389 522 1.34e-16 80.5
Msa0302090 AT5G63370.2 34.266 143 70 3 134 260 255 389 2.03e-16 79.7
Msa0302090 AT5G63370.3 34.266 143 70 3 134 260 255 389 2.03e-16 79.7
Msa0302090 AT2G38620.2 50.000 60 30 0 203 262 185 244 2.07e-16 78.6
Msa0302090 AT1G54610.1 45.833 72 39 0 203 274 283 354 2.24e-15 76.6
Msa0302090 AT1G54610.3 45.833 72 39 0 203 274 283 354 2.24e-15 76.6
Msa0302090 AT1G54610.2 45.833 72 39 0 203 274 283 354 2.24e-15 76.6
Msa0302090 AT2G46070.2 55.357 56 25 0 203 258 206 261 2.36e-15 75.5
Msa0302090 AT3G54180.1 48.333 60 31 0 203 262 183 242 2.96e-15 75.1
Msa0302090 AT1G67580.1 52.632 57 27 0 203 259 570 626 3.22e-15 76.3
Msa0302090 AT1G67580.2 52.632 57 27 0 203 259 570 626 3.22e-15 76.3
Msa0302090 AT2G46070.1 55.357 56 25 0 203 258 206 261 3.43e-15 75.5
Msa0302090 AT2G46070.3 55.357 56 25 0 203 258 240 295 3.44e-15 75.9
Msa0302090 AT1G76540.1 42.857 77 39 2 203 278 186 258 3.69e-15 74.7
Msa0302090 AT1G71530.2 50.847 59 29 0 203 261 312 370 5.81e-15 75.1
Msa0302090 AT1G71530.1 50.847 59 29 0 203 261 312 370 6.04e-15 75.5
Msa0302090 AT1G71530.3 50.847 59 29 0 203 261 312 370 6.24e-15 75.1
Msa0302090 AT3G59790.1 43.077 65 37 0 203 267 225 289 1.30e-14 73.9
Msa0302090 AT4G10010.1 52.632 57 27 0 203 259 141 197 1.40e-14 73.9
Msa0302090 AT1G20930.1 49.153 59 30 0 203 261 188 246 1.84e-14 72.8
Msa0302090 AT3G24190.1 38.298 94 58 0 92 185 140 233 1.87e-14 73.9
Msa0302090 AT1G53050.2 49.153 59 30 0 203 261 299 357 1.95e-14 73.9
Msa0302090 AT1G53050.1 49.153 59 30 0 203 261 299 357 1.95e-14 73.9
Msa0302090 AT1G73690.1 40.260 77 42 2 198 271 168 243 2.12e-14 73.2
Msa0302090 AT4G10010.2 50.847 59 29 0 203 261 321 379 2.32e-14 73.6
Msa0302090 AT5G50860.2 50.877 57 28 0 203 259 279 335 3.82e-14 72.8
Msa0302090 AT5G50860.1 50.877 57 28 0 203 259 279 335 4.05e-14 72.8
Msa0302090 AT1G66750.1 37.634 93 54 2 203 291 175 267 5.05e-14 72.0
Msa0302090 AT1G03740.2 49.123 57 29 0 203 259 378 434 5.20e-14 72.8
Msa0302090 AT1G03740.1 49.123 57 29 0 203 259 378 434 5.57e-14 72.8
Msa0302090 AT1G09600.1 45.763 59 32 0 203 261 328 386 5.92e-14 72.4
Msa0302090 AT1G33770.1 47.458 59 31 0 203 261 306 364 5.98e-14 72.4
Msa0302090 AT1G57700.1 45.763 59 32 0 203 261 311 369 7.64e-14 72.0
Msa0302090 AT1G01560.3 51.786 56 27 0 203 258 205 260 1.17e-13 70.9
Msa0302090 AT1G01560.2 51.786 56 27 0 203 258 205 260 1.68e-13 70.5
Msa0302090 AT3G05050.3 47.458 59 31 0 203 261 303 361 2.34e-13 70.5
Msa0302090 AT3G05050.2 47.458 59 31 0 203 261 303 361 2.34e-13 70.5
Msa0302090 AT3G05050.1 47.458 59 31 0 203 261 303 361 2.34e-13 70.5
Msa0302090 AT4G01370.1 51.786 56 27 0 203 258 208 263 3.14e-13 69.7
Msa0302090 AT1G18670.3 50.000 56 28 0 203 258 297 352 3.68e-13 70.1
Msa0302090 AT1G18040.1 40.000 65 39 0 198 262 169 233 3.82e-13 69.7
Msa0302090 AT1G18670.2 50.000 56 28 0 203 258 297 352 3.87e-13 70.1
Msa0302090 AT2G38620.3 49.057 53 27 0 203 255 185 237 3.92e-13 68.6
Msa0302090 AT2G38620.1 49.057 53 27 0 203 255 185 237 3.92e-13 68.6
Msa0302090 AT4G22940.1 45.763 59 32 0 203 261 269 327 4.02e-13 69.7
Msa0302090 AT1G18670.1 50.000 56 28 0 203 258 297 352 4.05e-13 70.1
Msa0302090 AT1G74330.3 50.000 56 28 0 203 258 288 343 4.08e-13 70.1
Msa0302090 AT1G74330.2 50.000 56 28 0 203 258 288 343 4.16e-13 70.1
Msa0302090 AT1G74330.1 50.000 56 28 0 203 258 288 343 4.41e-13 69.7
Msa0302090 AT3G45640.1 44.262 61 34 0 203 263 203 263 4.42e-13 69.3
Msa0302090 AT4G22940.2 45.763 59 32 0 203 261 269 327 4.50e-13 69.7
Msa0302090 AT4G11330.1 46.429 56 30 0 203 258 208 263 6.57e-13 68.9
Msa0302090 AT5G35980.2 41.176 85 47 2 203 287 289 370 7.56e-13 69.3
Msa0302090 AT3G01085.1 45.763 59 32 0 203 261 280 338 7.61e-13 68.9
Msa0302090 AT3G01085.2 45.763 59 32 0 203 261 280 338 7.61e-13 68.9
Msa0302090 AT3G01085.3 45.763 59 32 0 203 261 280 338 7.77e-13 68.9
Msa0302090 AT5G35980.1 41.176 85 47 2 203 287 289 370 8.00e-13 69.3
Msa0302090 AT5G35980.3 41.176 85 47 2 203 287 254 335 9.34e-13 68.9
Msa0302090 AT5G44290.2 45.763 59 32 0 203 261 302 360 1.73e-12 68.2
Msa0302090 AT5G44290.5 45.763 59 32 0 203 261 302 360 1.73e-12 68.2
Msa0302090 AT5G44290.4 45.763 59 32 0 203 261 302 360 1.73e-12 68.2
Msa0302090 AT5G44290.1 45.763 59 32 0 203 261 302 360 1.73e-12 68.2
Msa0302090 AT5G44290.3 45.763 59 32 0 203 261 302 360 1.73e-12 68.2
Msa0302090 AT3G14720.1 53.968 63 26 2 203 263 194 255 1.83e-12 67.8
Msa0302090 AT3G14720.2 53.968 63 26 2 203 263 194 255 1.97e-12 67.4
Msa0302090 AT3G14720.3 53.968 63 26 2 203 263 194 255 1.97e-12 67.4
Msa0302090 AT5G44290.6 45.763 59 32 0 203 261 302 360 2.03e-12 67.8
Msa0302090 AT1G53510.1 52.381 63 27 2 203 263 194 255 2.15e-12 67.8
Msa0302090 AT5G39420.1 44.643 56 31 0 203 258 270 325 2.21e-12 67.8
Msa0302090 AT2G43790.1 45.614 57 31 0 203 259 228 284 2.48e-12 67.0
Msa0302090 AT5G44290.7 45.763 59 32 0 203 261 302 360 2.59e-12 67.4
Msa0302090 AT5G19010.1 52.381 63 27 2 203 263 194 255 3.39e-12 67.0
Msa0302090 AT1G73670.1 45.946 74 37 2 203 274 259 331 3.42e-12 67.0
Msa0302090 AT4G28980.3 41.975 81 43 3 203 280 297 376 3.50e-12 67.0
Msa0302090 AT4G28980.1 41.975 81 43 3 203 280 297 376 3.50e-12 67.0
Msa0302090 AT4G28980.2 41.975 81 43 3 203 280 297 376 3.50e-12 67.0
Msa0302090 AT1G01560.4 53.846 52 24 0 203 254 205 256 4.53e-12 65.5
Msa0302090 AT1G01560.1 53.846 52 24 0 203 254 205 256 4.53e-12 65.5
Msa0302090 AT1G18150.3 52.381 63 27 2 203 263 273 334 5.32e-12 66.6
Msa0302090 AT1G18150.2 52.381 63 27 2 203 263 273 334 5.32e-12 66.6
Msa0302090 AT1G18150.1 52.381 63 27 2 203 263 273 334 5.32e-12 66.6
Msa0302090 AT1G07880.2 40.278 72 43 0 203 274 198 269 5.79e-12 65.9
Msa0302090 AT2G42880.2 49.206 63 29 2 203 263 194 255 6.79e-12 65.9
Msa0302090 AT2G42880.1 49.206 63 29 2 203 263 194 255 7.43e-12 66.2
Msa0302090 AT4G13020.4 50.000 56 28 0 203 258 163 218 1.19e-11 65.1
Msa0302090 AT4G13020.6 50.000 56 28 0 203 258 163 218 1.22e-11 65.1
Msa0302090 AT4G13020.7 50.000 56 28 0 203 258 163 218 1.24e-11 65.1
Msa0302090 AT4G13020.8 50.000 56 28 0 203 258 172 227 1.32e-11 65.1
Msa0302090 AT4G13020.1 50.000 56 28 0 203 258 163 218 1.47e-11 65.1
Msa0302090 AT4G13020.2 50.000 56 28 0 203 258 171 226 1.48e-11 65.1
Msa0302090 AT4G13020.3 50.000 56 28 0 203 258 171 226 1.48e-11 65.1
Msa0302090 AT4G13020.5 50.000 56 28 0 203 258 172 227 1.55e-11 65.1
Msa0302090 AT3G18040.2 50.794 63 28 2 203 263 104 165 1.56e-11 64.7
Msa0302090 AT3G18040.4 50.794 63 28 2 203 263 301 362 1.89e-11 65.1
Msa0302090 AT5G63610.1 35.227 88 42 2 183 262 187 267 1.96e-11 64.7
Msa0302090 AT3G18040.3 50.794 63 28 2 203 263 301 362 2.21e-11 64.7
Msa0302090 AT3G18040.1 50.794 63 28 2 203 263 192 253 2.36e-11 64.3
Msa0302090 AT4G19110.2 44.068 59 33 0 203 261 163 221 2.44e-11 64.3
Msa0302090 AT3G18040.5 50.794 63 28 2 203 263 187 248 2.62e-11 64.3
Msa0302090 AT4G19110.1 44.068 59 33 0 203 261 163 221 2.69e-11 64.3
Msa0302090 AT4G19110.3 44.068 59 33 0 203 261 107 165 2.75e-11 63.9
Msa0302090 AT5G45430.1 44.068 59 33 0 203 261 163 221 3.02e-11 64.3
Msa0302090 AT5G45430.2 44.068 59 33 0 203 261 163 221 3.18e-11 63.9
Msa0302090 AT5G64960.2 46.429 56 30 0 203 258 152 207 3.25e-11 63.9
Msa0302090 AT5G64960.1 46.429 56 30 0 203 258 205 260 3.42e-11 63.9
Msa0302090 AT4G31390.2 39.583 96 55 1 93 185 113 208 4.66e-11 63.9
Msa0302090 AT2G01450.3 49.153 59 27 2 203 259 185 242 4.69e-11 63.5
Msa0302090 AT2G01450.1 49.153 59 27 2 203 259 185 242 4.69e-11 63.5
Msa0302090 AT2G01450.2 49.153 59 27 2 203 259 185 242 4.69e-11 63.5
Msa0302090 AT2G01450.4 49.153 59 27 2 203 259 185 242 4.69e-11 63.5
Msa0302090 AT4G31390.1 39.583 96 55 1 93 185 113 208 5.14e-11 63.5
Msa0302090 AT5G10270.1 44.643 56 31 0 203 258 205 260 7.31e-11 63.2

Find 69 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGACCATATTCACAAATT+TGG 0.128326 2_3:-58704541 Msa0302090:CDS
GAATTGTTGGCTTCTAAATA+TGG 0.152719 2_3:-58705675 Msa0302090:CDS
CATTTGCCCACCTGAATATT+TGG 0.168236 2_3:-58704472 Msa0302090:CDS
GCTTAGGACATAACAGAATT+AGG 0.254671 2_3:-58704356 Msa0302090:intron
ATGAGTGCTTTGGGTTCATT+TGG 0.260013 2_3:-58704633 Msa0302090:CDS
TAATTATACCTAGTATAATT+AGG 0.273993 2_3:+58703470 None:intergenic
TGGTCCCAAATTTGTGAATA+TGG 0.278942 2_3:+58704536 None:intergenic
GAGAGTTCTTCCAAATATTC+AGG 0.282444 2_3:+58704462 None:intergenic
TATTTAGAAGCCAACAATTC+AGG 0.302555 2_3:+58705678 None:intergenic
CACTTGATTTCTTCCCTGGT+TGG 0.307218 2_3:+58703500 None:intergenic
AAGACCATATTCACAAATTT+GGG 0.307258 2_3:-58704540 Msa0302090:CDS
GGAAGAACTCTCTGAGCTTC+AGG 0.314029 2_3:-58704451 Msa0302090:intron
TCTTATCAGCCACTGTTTCC+TGG 0.326347 2_3:-58703726 Msa0302090:intron
ACTTGATTTCTTCCCTGGTT+GGG 0.328331 2_3:+58703501 None:intergenic
TCTGTATAGTCCTGAATTGT+TGG 0.334504 2_3:-58705688 Msa0302090:CDS
GTTGAAATTATGAGTGCTTT+GGG 0.341997 2_3:-58704642 Msa0302090:CDS
ATCGTACCTTTGGTTAGAAA+TGG 0.357079 2_3:-58705798 Msa0302090:CDS
GACACTTGATAAGAATAAAA+AGG 0.358611 2_3:-58704580 Msa0302090:CDS
TGTTGAAATTATGAGTGCTT+TGG 0.360188 2_3:-58704643 Msa0302090:CDS
CATGCACTTGATTTCTTCCC+TGG 0.361221 2_3:+58703496 None:intergenic
GCAATAAAGTAAGTTACATT+TGG 0.363609 2_3:-58705999 Msa0302090:five_prime_UTR
TGGTCAGCTGGTTGCGTACT+TGG 0.374738 2_3:-58703846 Msa0302090:CDS
AATTGTTGGCTTCTAAATAT+GGG 0.410967 2_3:-58705674 Msa0302090:CDS
CTTGATTTCTTCCCTGGTTG+GGG 0.414502 2_3:+58703502 None:intergenic
CCATACATCATAGTTTGTAT+TGG 0.425949 2_3:-58702462 Msa0302090:intron
TACAAGTAACATCGTACCTT+TGG 0.441869 2_3:-58705808 Msa0302090:CDS
TACTCAGTTGCACCGAATAT+AGG 0.447929 2_3:+58703888 None:intergenic
CCTTGATAATTTCCACAAGT+TGG 0.452229 2_3:+58703688 None:intergenic
AAATATTTGTTCAACTAAAG+AGG 0.453104 2_3:+58706031 None:intergenic
TCGTTGGATAGGAATTGAAC+TGG 0.469500 2_3:+58705902 None:intergenic
TATTCAGGTGGGCAAATGTC+AGG 0.469978 2_3:+58704477 None:intergenic
CTGAAACGACGTCGTTGGAT+AGG 0.472321 2_3:+58705891 None:intergenic
TGACCTAACTTCACAAAAGT+TGG 0.472861 2_3:+58704516 None:intergenic
AGAGCTCCTGAGCCTATATT+CGG 0.474591 2_3:-58703900 Msa0302090:CDS
TGAGTGCTTTGGGTTCATTT+GGG 0.475363 2_3:-58704632 Msa0302090:CDS
GTCATTGACATCTGGTCAGC+TGG 0.482850 2_3:-58703858 Msa0302090:CDS
CACAACCATGTTATTCATCA+TGG 0.483949 2_3:-58705941 Msa0302090:CDS
CAAAATTCTTGCTGCTGTGG+TGG 0.496154 2_3:-58705844 Msa0302090:CDS
ATATCATCAGCACGGTTCAA+TGG 0.498271 2_3:+58705753 None:intergenic
AATATTTGTTCAACTAAAGA+GGG 0.498394 2_3:+58706032 None:intergenic
CCACTGTTTCCTGGTGAGAG+TGG 0.506242 2_3:-58703717 Msa0302090:CDS
TGCGATTTGAAAATGTGGCC+AGG 0.507455 2_3:-58704320 Msa0302090:CDS
CCAACTTGTGGAAATTATCA+AGG 0.511188 2_3:-58703688 Msa0302090:intron
TAGGTCAAGGATTGTCCACT+AGG 0.515716 2_3:-58704500 Msa0302090:CDS
TATGGTTTAGGTTGTACAAA+GGG 0.520941 2_3:-58704667 Msa0302090:intron
AAAGGTACGATGTTACTTGT+AGG 0.523602 2_3:+58705810 None:intergenic
ACACCACAGTCATTGACATC+TGG 0.524089 2_3:-58703866 Msa0302090:CDS
GCATGAATCCTAATTATACT+AGG 0.531370 2_3:-58703478 Msa0302090:intron
TTTGTTCCATTTCTAACCAA+AGG 0.542965 2_3:+58705792 None:intergenic
TGCCTCTGAAACGACGTCGT+TGG 0.544692 2_3:+58705886 None:intergenic
ATCCAACGACGTCGTTTCAG+AGG 0.546238 2_3:-58705888 Msa0302090:CDS
TCTCAAAATTCTTGCTGCTG+TGG 0.563774 2_3:-58705847 Msa0302090:CDS
GTTGCACCGAATATAGGCTC+AGG 0.565527 2_3:+58703894 None:intergenic
TGGGCAAATGTCAGGCCTAG+TGG 0.579864 2_3:+58704485 None:intergenic
TGGTCTACTCCACTCTCACC+AGG 0.583110 2_3:+58703708 None:intergenic
ATATGGGTCCCAACGCATCA+AGG 0.588051 2_3:-58705658 Msa0302090:intron
AGTTCTTCCAAATATTCAGG+TGG 0.604803 2_3:+58704465 None:intergenic
TGCTGATGATATTCAAGCTG+AGG 0.610385 2_3:-58705742 Msa0302090:CDS
TTATGGTTTAGGTTGTACAA+AGG 0.612841 2_3:-58704668 Msa0302090:intron
CGAGTCCATGATGAATAACA+TGG 0.613087 2_3:+58705936 None:intergenic
TCAATGGAAGTGTAAGAACA+TGG 0.624343 2_3:+58705769 None:intergenic
GTTCTTCCAAATATTCAGGT+GGG 0.636431 2_3:+58704466 None:intergenic
CGTTGGATAGGAATTGAACT+GGG 0.640236 2_3:+58705903 None:intergenic
TGTTATTCATCATGGACTCG+TGG 0.651746 2_3:-58705933 Msa0302090:CDS
CCACTCTCACCAGGAAACAG+TGG 0.653830 2_3:+58703717 None:intergenic
CAGCTTGAATATCATCAGCA+CGG 0.663261 2_3:+58705745 None:intergenic
GAGTGGAGTAGACCAACTTG+TGG 0.666033 2_3:-58703700 Msa0302090:CDS
GCGATTTGAAAATGTGGCCA+GGG 0.683165 2_3:-58704319 Msa0302090:intron
TGACCAGATGTCAATGACTG+TGG 0.757242 2_3:+58703863 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATAATACGAACAAAAT+AGG - chr2_3:58702908-58702927 Msa0302090:intron 15.0%
!! TATATAATACGAACAAAATA+GGG - chr2_3:58702909-58702928 Msa0302090:intron 15.0%
!! TGATTATTATGTACTTTATT+TGG - chr2_3:58703145-58703164 Msa0302090:intron 15.0%
!! ATAAAAAATTGTAGTCAATA+AGG + chr2_3:58703338-58703357 None:intergenic 15.0%
!!! TTCAAATATACATAACTTTT+CGG + chr2_3:58703409-58703428 None:intergenic 15.0%
!!! TATTTTCAGTTTAGTTAATT+CGG - chr2_3:58704880-58704899 Msa0302090:intron 15.0%
!! TAATTATACCTAGTATAATT+AGG + chr2_3:58704972-58704991 None:intergenic 15.0%
!! AACTATACAAATTAGAATTA+TGG + chr2_3:58705335-58705354 None:intergenic 15.0%
!! AACTATACAAATTAGAATTA+TGG + chr2_3:58705335-58705354 None:intergenic 15.0%
!! AATATTTGTTCAACTAAAGA+GGG + chr2_3:58702410-58702429 None:intergenic 20.0%
!! AAATATTTGTTCAACTAAAG+AGG + chr2_3:58702411-58702430 None:intergenic 20.0%
!! CAAATTTCAACAACAATATT+TGG + chr2_3:58703623-58703642 None:intergenic 20.0%
!! AAATGCAACTATATAAATGA+GGG + chr2_3:58704034-58704053 None:intergenic 20.0%
!! AAAATGCAACTATATAAATG+AGG + chr2_3:58704035-58704054 None:intergenic 20.0%
!! AAACGAAACAAAAATATGAA+AGG + chr2_3:58704855-58704874 None:intergenic 20.0%
! GCAATAAAGTAAGTTACATT+TGG - chr2_3:58702440-58702459 Msa0302090:CDS 25.0%
!!! AATTGTTGGCTTCTAAATAT+GGG - chr2_3:58702765-58702784 Msa0302090:intron 25.0%
! CAAGAAAGAACTTTCAAAAA+GGG + chr2_3:58702997-58703016 None:intergenic 25.0%
!!! CTTTTTGAAAGTTCTTTCTT+GGG - chr2_3:58702996-58703015 Msa0302090:intron 25.0%
! ATGTATATTTGAACACAGTT+TGG - chr2_3:58703416-58703435 Msa0302090:intron 25.0%
! TGTCATTAGTTACGATATTT+AGG + chr2_3:58703485-58703504 None:intergenic 25.0%
! AGATGGTTAATGAATATAAC+AGG + chr2_3:58703559-58703578 None:intergenic 25.0%
! TTTCAACAACAATATTTGGA+CGG + chr2_3:58703619-58703638 None:intergenic 25.0%
!! ATGAATTCAAGTTTGAGTTA+AGG + chr2_3:58703660-58703679 None:intergenic 25.0%
! AACCAATAAAACCAAAATCA+GGG + chr2_3:58703753-58703772 None:intergenic 25.0%
! TAACCAATAAAACCAAAATC+AGG + chr2_3:58703754-58703773 None:intergenic 25.0%
!!! GATTTTGGTTTTATTGGTTA+TGG - chr2_3:58703754-58703773 Msa0302090:intron 25.0%
!!! TGTTTTTAGAGCAAAAGAAT+GGG - chr2_3:58703837-58703856 Msa0302090:CDS 25.0%
! GACACTTGATAAGAATAAAA+AGG - chr2_3:58703859-58703878 Msa0302090:CDS 25.0%
! AAGACCATATTCACAAATTT+GGG - chr2_3:58703899-58703918 Msa0302090:CDS 25.0%
! AACTATATAAATGAGGGAAA+GGG + chr2_3:58704028-58704047 None:intergenic 25.0%
! TTGAATTCAAGCTCATAAAA+AGG + chr2_3:58704231-58704250 None:intergenic 25.0%
! AAATCTTTGTAGGTTAATCA+AGG - chr2_3:58705008-58705027 Msa0302090:intron 25.0%
! AGAATTATGGATCAAAAGAT+TGG + chr2_3:58705322-58705341 None:intergenic 25.0%
! AGAATTATGGATCAAAAGAT+TGG + chr2_3:58705322-58705341 None:intergenic 25.0%
! GAAAAAATGGGTAGAAATTA+GGG - chr2_3:58705663-58705682 Msa0302090:CDS 25.0%
! TCTTACAAAGAGATACAAAT+GGG + chr2_3:58705727-58705746 None:intergenic 25.0%
! TTCTTACAAAGAGATACAAA+TGG + chr2_3:58705728-58705747 None:intergenic 25.0%
!!! CTTTATCTTGTTTATCCTTT+TGG - chr2_3:58705852-58705871 Msa0302090:CDS 25.0%
!! TAGATTGTTGTTATTGCTTA+TGG - chr2_3:58705918-58705937 Msa0302090:CDS 25.0%
!! TATTGCTTATGGTTAACTTT+TGG - chr2_3:58705929-58705948 Msa0302090:CDS 25.0%
TTTGTTCCATTTCTAACCAA+AGG + chr2_3:58702650-58702669 None:intergenic 30.0%
TATTTAGAAGCCAACAATTC+AGG + chr2_3:58702764-58702783 None:intergenic 30.0%
!! GAATTGTTGGCTTCTAAATA+TGG - chr2_3:58702764-58702783 Msa0302090:intron 30.0%
TCATAAGGCGAAAAAAGTAA+TGG + chr2_3:58702819-58702838 None:intergenic 30.0%
!!! TTGCGCACAGATTTTAAAAT+CGG - chr2_3:58702844-58702863 Msa0302090:intron 30.0%
!!! GGAAATGTTTTAACGTGTTT+TGG - chr2_3:58702865-58702884 Msa0302090:intron 30.0%
!!! AATGTTTTAACGTGTTTTGG+AGG - chr2_3:58702868-58702887 Msa0302090:intron 30.0%
CCAAGAAAGAACTTTCAAAA+AGG + chr2_3:58702998-58703017 None:intergenic 30.0%
!! CCTTTTTGAAAGTTCTTTCT+TGG - chr2_3:58702995-58703014 Msa0302090:intron 30.0%
GTAGTACTTGATTCACTAAT+TGG - chr2_3:58703018-58703037 Msa0302090:intron 30.0%
AATTGGTAGAGCTGTTAAAA+CGG - chr2_3:58703035-58703054 Msa0302090:intron 30.0%
! GTACTTTATTTGGTACTTGT+AGG - chr2_3:58703155-58703174 Msa0302090:intron 30.0%
ATAGTACTAGTTCATACATG+TGG - chr2_3:58703188-58703207 Msa0302090:intron 30.0%
ATATTTGAACACAGTTTGGT+TGG - chr2_3:58703420-58703439 Msa0302090:intron 30.0%
AACTAATGACATTCATGATG+TGG - chr2_3:58703494-58703513 Msa0302090:CDS 30.0%
TGATGTGGTTAATTACAATC+AGG - chr2_3:58703509-58703528 Msa0302090:CDS 30.0%
!!! GGTTTTATTGGTTATGGTTT+AGG - chr2_3:58703760-58703779 Msa0302090:intron 30.0%
!! TTATGGTTTAGGTTGTACAA+AGG - chr2_3:58703771-58703790 Msa0302090:intron 30.0%
!! TATGGTTTAGGTTGTACAAA+GGG - chr2_3:58703772-58703791 Msa0302090:intron 30.0%
TGTTGAAATTATGAGTGCTT+TGG - chr2_3:58703796-58703815 Msa0302090:intron 30.0%
GTTGAAATTATGAGTGCTTT+GGG - chr2_3:58703797-58703816 Msa0302090:intron 30.0%
!!! CTGTTTTTAGAGCAAAAGAA+TGG - chr2_3:58703836-58703855 Msa0302090:CDS 30.0%
GAAGACCATATTCACAAATT+TGG - chr2_3:58703898-58703917 Msa0302090:CDS 30.0%
CAACTATATAAATGAGGGAA+AGG + chr2_3:58704029-58704048 None:intergenic 30.0%
! TTTTGTGCGATTTGAAAATG+TGG - chr2_3:58704114-58704133 Msa0302090:intron 30.0%
ATTCAAGCTCTTGAACAATT+CGG - chr2_3:58704245-58704264 Msa0302090:intron 30.0%
GACAATGCATAAAATATGCA+AGG - chr2_3:58704402-58704421 Msa0302090:intron 30.0%
GAACAGATGTAAGATATGTT+TGG + chr2_3:58704509-58704528 None:intergenic 30.0%
ACATATCTTACATCTGTTCT+AGG - chr2_3:58704510-58704529 Msa0302090:CDS 30.0%
GCATGAATCCTAATTATACT+AGG - chr2_3:58704961-58704980 Msa0302090:intron 30.0%
TAAACTTGGGAAATCTTTGT+AGG - chr2_3:58704998-58705017 Msa0302090:intron 30.0%
AAGTCGTATCGAAGAATATA+TGG - chr2_3:58705097-58705116 Msa0302090:intron 30.0%
ATTCAATCATAGCTCAGTTA+TGG + chr2_3:58705156-58705175 None:intergenic 30.0%
ACAAAAATGGCACTCTAATA+CGG + chr2_3:58705209-58705228 None:intergenic 30.0%
TCGTTAGGATACAACAAAAA+TGG + chr2_3:58705222-58705241 None:intergenic 30.0%
! TTTGTTGTATCCTAACGAAT+AGG - chr2_3:58705224-58705243 Msa0302090:intron 30.0%
TCATGCTATAGTTCATACTT+TGG - chr2_3:58705388-58705407 Msa0302090:intron 30.0%
GAAACAATTGTAAACACCTT+GGG - chr2_3:58705598-58705617 Msa0302090:intron 30.0%
GGAAAAAATGGGTAGAAATT+AGG - chr2_3:58705662-58705681 Msa0302090:CDS 30.0%
TTGTAAGAACTCATTGATAG+TGG - chr2_3:58705739-58705758 Msa0302090:CDS 30.0%
!! ATCTTGTTTATCCTTTTGGT+TGG - chr2_3:58705856-58705875 Msa0302090:CDS 30.0%
!! TATGGTTAACTTTTGGTTGT+TGG - chr2_3:58705936-58705955 Msa0302090:CDS 30.0%
CCAATACAAACTATGATGTA+TGG + chr2_3:58705980-58705999 None:intergenic 30.0%
! CCATACATCATAGTTTGTAT+TGG - chr2_3:58705977-58705996 Msa0302090:exon 30.0%
CACAACCATGTTATTCATCA+TGG - chr2_3:58702498-58702517 Msa0302090:intron 35.0%
!!! AATTTTGAGACGTTTGAGGT+TGG + chr2_3:58702582-58702601 None:intergenic 35.0%
!!! CAAGAATTTTGAGACGTTTG+AGG + chr2_3:58702586-58702605 None:intergenic 35.0%
! AAAGGTACGATGTTACTTGT+AGG + chr2_3:58702632-58702651 None:intergenic 35.0%
TACAAGTAACATCGTACCTT+TGG - chr2_3:58702631-58702650 Msa0302090:intron 35.0%
ATCGTACCTTTGGTTAGAAA+TGG - chr2_3:58702641-58702660 Msa0302090:intron 35.0%
! TCAATGGAAGTGTAAGAACA+TGG + chr2_3:58702673-58702692 None:intergenic 35.0%
TCTGTATAGTCCTGAATTGT+TGG - chr2_3:58702751-58702770 Msa0302090:intron 35.0%
AGTAAAAACCTTGATGCGTT+GGG + chr2_3:58702792-58702811 None:intergenic 35.0%
AAGTAAAAACCTTGATGCGT+TGG + chr2_3:58702793-58702812 None:intergenic 35.0%
!!! GTGTTTTGGAGGTTTTTATG+CGG - chr2_3:58702879-58702898 Msa0302090:intron 35.0%
ATTGGTAGAGCTGTTAAAAC+GGG - chr2_3:58703036-58703055 Msa0302090:intron 35.0%
TCATGATTGACTGCGTTTAA+TGG + chr2_3:58703308-58703327 None:intergenic 35.0%
AAACGCAGTCAATCATGATT+AGG - chr2_3:58703310-58703329 Msa0302090:intron 35.0%
! AACACAGTTTGGTTGGTTAA+CGG - chr2_3:58703427-58703446 Msa0302090:intron 35.0%
! TTGGTTGGTTAACGGATAAT+CGG - chr2_3:58703435-58703454 Msa0302090:intron 35.0%
GTTAATTACAATCAGGTCGA+TGG - chr2_3:58703516-58703535 Msa0302090:intron 35.0%
GGTTGATTACGTTCAATAGA+TGG + chr2_3:58703576-58703595 None:intergenic 35.0%
GTCAGTGCAATTTAAATACG+TGG + chr2_3:58703597-58703616 None:intergenic 35.0%
TGTATGCATGCAATGTAGAT+TGG - chr2_3:58703707-58703726 Msa0302090:CDS 35.0%
GTATGCATGCAATGTAGATT+GGG - chr2_3:58703708-58703727 Msa0302090:CDS 35.0%
! CAATGTAGATTGGGTTTTTG+AGG - chr2_3:58703717-58703736 Msa0302090:CDS 35.0%
!!! GACCCTGATTTTGGTTTTAT+TGG - chr2_3:58703748-58703767 Msa0302090:intron 35.0%
TGGTCCCAAATTTGTGAATA+TGG + chr2_3:58703906-58703925 None:intergenic 35.0%
TGACCTAACTTCACAAAAGT+TGG + chr2_3:58703926-58703945 None:intergenic 35.0%
! ACTTTTGTGAAGTTAGGTCA+AGG - chr2_3:58703926-58703945 Msa0302090:intron 35.0%
GTTCTTCCAAATATTCAGGT+GGG + chr2_3:58703976-58703995 None:intergenic 35.0%
AGTTCTTCCAAATATTCAGG+TGG + chr2_3:58703977-58703996 None:intergenic 35.0%
GAGAGTTCTTCCAAATATTC+AGG + chr2_3:58703980-58703999 None:intergenic 35.0%
!! ACATGTTCTATGTGTTGCTT+AGG - chr2_3:58704067-58704086 Msa0302090:intron 35.0%
GCTTAGGACATAACAGAATT+AGG - chr2_3:58704083-58704102 Msa0302090:intron 35.0%
! ATTCAACTCATTTTCAACCC+TGG + chr2_3:58704140-58704159 None:intergenic 35.0%
! GGGTTGAAAATGAGTTGAAT+TGG - chr2_3:58704140-58704159 Msa0302090:intron 35.0%
AAAAGGTTCATGATGAACTC+AGG + chr2_3:58704214-58704233 None:intergenic 35.0%
GCTCAATAGTTTGACTCATT+TGG - chr2_3:58704272-58704291 Msa0302090:intron 35.0%
TGCATAAAATATGCAAGGTC+CGG - chr2_3:58704407-58704426 Msa0302090:intron 35.0%
! CCTTGATAATTTCCACAAGT+TGG + chr2_3:58704754-58704773 None:intergenic 35.0%
CCAACTTGTGGAAATTATCA+AGG - chr2_3:58704751-58704770 Msa0302090:intron 35.0%
ATATGTTCAAGCTAGTAGCA+TGG + chr2_3:58704819-58704838 None:intergenic 35.0%
GTTAATTCGGAAGTTTCATG+TGG - chr2_3:58704893-58704912 Msa0302090:intron 35.0%
TCATGCTATAGTTCACACTT+TGG - chr2_3:58705293-58705312 Msa0302090:intron 35.0%
AACCAAAAGAGAAGATCCTT+AGG - chr2_3:58705524-58705543 Msa0302090:intron 35.0%
! TTCCTAAGGATCTTCTCTTT+TGG + chr2_3:58705529-58705548 None:intergenic 35.0%
TCCTTAGGAAATCAAAGCTA+AGG - chr2_3:58705539-58705558 Msa0302090:intron 35.0%
CCTTAGGAAATCAAAGCTAA+GGG - chr2_3:58705540-58705559 Msa0302090:intron 35.0%
!!! CTAAGGGTTGTTTCTCTTTT+GGG - chr2_3:58705556-58705575 Msa0302090:intron 35.0%
!!! TAAGGGTTGTTTCTCTTTTG+GGG - chr2_3:58705557-58705576 Msa0302090:intron 35.0%
GGAAACAATTGTAAACACCT+TGG - chr2_3:58705597-58705616 Msa0302090:intron 35.0%
! TTCATGAGTGTCTTGTTCAT+TGG - chr2_3:58705631-58705650 Msa0302090:intron 35.0%
TCTTGTTCATTGGTGAGATT+GGG - chr2_3:58705641-58705660 Msa0302090:intron 35.0%
TTGGTGAGATTGGGAAAAAA+TGG - chr2_3:58705650-58705669 Msa0302090:intron 35.0%
TGGTGAGATTGGGAAAAAAT+GGG - chr2_3:58705651-58705670 Msa0302090:intron 35.0%
!! AGAACTCATTGATAGTGGAT+TGG - chr2_3:58705744-58705763 Msa0302090:CDS 35.0%
!! TTATCCTTTTGGTTGGATTG+TGG - chr2_3:58705863-58705882 Msa0302090:CDS 35.0%
AAAACCACAATCCAACCAAA+AGG + chr2_3:58705870-58705889 None:intergenic 35.0%
!!! TTGTGGTTTTGTTATGCACT+TGG - chr2_3:58705880-58705899 Msa0302090:CDS 35.0%
! ATGCACTTGGTTTCTAGATT+AGG - chr2_3:58705893-58705912 Msa0302090:CDS 35.0%
ATGTATGGAGCAAGTATCAA+TGG + chr2_3:58705965-58705984 None:intergenic 35.0%
!! TATTGGTGTGATTTTGAGTC+TGG - chr2_3:58705994-58706013 Msa0302090:five_prime_UTR 35.0%
CGAGTCCATGATGAATAACA+TGG + chr2_3:58702506-58702525 None:intergenic 40.0%
TGTTATTCATCATGGACTCG+TGG - chr2_3:58702506-58702525 Msa0302090:intron 40.0%
CGTTGGATAGGAATTGAACT+GGG + chr2_3:58702539-58702558 None:intergenic 40.0%
TCGTTGGATAGGAATTGAAC+TGG + chr2_3:58702540-58702559 None:intergenic 40.0%
TCTCAAAATTCTTGCTGCTG+TGG - chr2_3:58702592-58702611 Msa0302090:intron 40.0%
ATATCATCAGCACGGTTCAA+TGG + chr2_3:58702689-58702708 None:intergenic 40.0%
CAGCTTGAATATCATCAGCA+CGG + chr2_3:58702697-58702716 None:intergenic 40.0%
TGCTGATGATATTCAAGCTG+AGG - chr2_3:58702697-58702716 Msa0302090:intron 40.0%
CTGTGCGCAAGAAATTCATA+AGG + chr2_3:58702834-58702853 None:intergenic 40.0%
!!! GTCTATTTTGACAGCTCTAC+TGG - chr2_3:58703067-58703086 Msa0302090:intron 40.0%
!! ATTTTGACAGCTCTACTGGT+TGG - chr2_3:58703071-58703090 Msa0302090:intron 40.0%
!!! GATTGATTCGACCCTGATTT+TGG - chr2_3:58703739-58703758 Msa0302090:intron 40.0%
! ATGAGTGCTTTGGGTTCATT+TGG - chr2_3:58703806-58703825 Msa0302090:intron 40.0%
! TGAGTGCTTTGGGTTCATTT+GGG - chr2_3:58703807-58703826 Msa0302090:intron 40.0%
! GGACCAACTTTTGTGAAGTT+AGG - chr2_3:58703920-58703939 Msa0302090:intron 40.0%
CATTTGCCCACCTGAATATT+TGG - chr2_3:58703967-58703986 Msa0302090:intron 40.0%
AGCTCTTGAACAATTCGGTT+CGG - chr2_3:58704250-58704269 Msa0302090:intron 40.0%
GCATAAAATATGCAAGGTCC+GGG - chr2_3:58704408-58704427 Msa0302090:intron 40.0%
CATAAAATATGCAAGGTCCG+GGG - chr2_3:58704409-58704428 Msa0302090:intron 40.0%
!!! TGACGGTGAACTTTTTTTGG+TGG + chr2_3:58704450-58704469 None:intergenic 40.0%
!!! GGTTGACGGTGAACTTTTTT+TGG + chr2_3:58704453-58704472 None:intergenic 40.0%
CTGTAAAACTGCCCTATGTA+GGG + chr2_3:58704474-58704493 None:intergenic 40.0%
TACTCAGTTGCACCGAATAT+AGG + chr2_3:58704554-58704573 None:intergenic 40.0%
!! GTACTTGGTGAACTTTTGCT+TGG - chr2_3:58704608-58704627 Msa0302090:CDS 40.0%
ACACAAAGAAGCTAGTTACC+TGG + chr2_3:58704634-58704653 None:intergenic 40.0%
CTAGCTTCTTTGTGTATGCT+TGG - chr2_3:58704639-58704658 Msa0302090:CDS 40.0%
ACTTGATTTCTTCCCTGGTT+GGG + chr2_3:58704941-58704960 None:intergenic 40.0%
TGACTACACTCCTATTCGTT+AGG + chr2_3:58705237-58705256 None:intergenic 40.0%
! TGAGTTGAGAAACACATGAG+TGG - chr2_3:58705465-58705484 Msa0302090:intron 40.0%
! AGAGTCTTTTGTGAGCAACT+TGG - chr2_3:58705488-58705507 Msa0302090:intron 40.0%
! GAGTCTTTTGTGAGCAACTT+GGG - chr2_3:58705489-58705508 Msa0302090:intron 40.0%
!! CCCTTAGCTTTGATTTCCTA+AGG + chr2_3:58705543-58705562 None:intergenic 40.0%
!!! GCTAAGGGTTGTTTCTCTTT+TGG - chr2_3:58705555-58705574 Msa0302090:intron 40.0%
!!! AAGGGTTGTTTCTCTTTTGG+GGG - chr2_3:58705558-58705577 Msa0302090:intron 40.0%
! CATGAATTTTCACTCTCCCA+AGG + chr2_3:58705617-58705636 None:intergenic 40.0%
! GTCTTGTTCATTGGTGAGAT+TGG - chr2_3:58705640-58705659 Msa0302090:intron 40.0%
CAAGAAATGTTCACCCAGTT+CGG + chr2_3:58705807-58705826 None:intergenic 40.0%
CAAAATTCTTGCTGCTGTGG+TGG - chr2_3:58702595-58702614 Msa0302090:intron 45.0%
GCGTGAGAAATCAATAGGGT+AGG - chr2_3:58702933-58702952 Msa0302090:intron 45.0%
!! GCTGTTAAAACGGGCTAAAG+TGG - chr2_3:58703045-58703064 Msa0302090:intron 45.0%
TAGGTCAAGGATTGTCCACT+AGG - chr2_3:58703939-58703958 Msa0302090:intron 45.0%
TATTCAGGTGGGCAAATGTC+AGG + chr2_3:58703965-58703984 None:intergenic 45.0%
TGCGATTTGAAAATGTGGCC+AGG - chr2_3:58704119-58704138 Msa0302090:intron 45.0%
GCGATTTGAAAATGTGGCCA+GGG - chr2_3:58704120-58704139 Msa0302090:intron 45.0%
TGAGCTTAGCTCAGTTGGTT+GGG - chr2_3:58704380-58704399 Msa0302090:intron 45.0%
!!! AACTTTTTTTGGTGGTGGCC+GGG + chr2_3:58704442-58704461 None:intergenic 45.0%
!!! GAACTTTTTTTGGTGGTGGC+CGG + chr2_3:58704443-58704462 None:intergenic 45.0%
!!! CGGTGAACTTTTTTTGGTGG+TGG + chr2_3:58704447-58704466 None:intergenic 45.0%
TTCACCGTCAACCCTACATA+GGG - chr2_3:58704460-58704479 Msa0302090:CDS 45.0%
CCTGTAAAACTGCCCTATGT+AGG + chr2_3:58704475-58704494 None:intergenic 45.0%
! CCTACATAGGGCAGTTTTAC+AGG - chr2_3:58704472-58704491 Msa0302090:CDS 45.0%
AGAGCTCCTGAGCCTATATT+CGG - chr2_3:58704539-58704558 Msa0302090:CDS 45.0%
ACACCACAGTCATTGACATC+TGG - chr2_3:58704573-58704592 Msa0302090:CDS 45.0%
TGACCAGATGTCAATGACTG+TGG + chr2_3:58704579-58704598 None:intergenic 45.0%
TCTTATCAGCCACTGTTTCC+TGG - chr2_3:58704713-58704732 Msa0302090:intron 45.0%
GTTTCATGTGGTTCACTTGC+AGG - chr2_3:58704905-58704924 Msa0302090:intron 45.0%
! GTGGTTCACTTGCAGGTTTT+AGG - chr2_3:58704912-58704931 Msa0302090:intron 45.0%
CTTGATTTCTTCCCTGGTTG+GGG + chr2_3:58704940-58704959 None:intergenic 45.0%
CACTTGATTTCTTCCCTGGT+TGG + chr2_3:58704942-58704961 None:intergenic 45.0%
CATGCACTTGATTTCTTCCC+TGG + chr2_3:58704946-58704965 None:intergenic 45.0%
!! TGGGGGTTAGATTCTAGAGT+TGG - chr2_3:58705575-58705594 Msa0302090:intron 45.0%
!! GGGGGTTAGATTCTAGAGTT+GGG - chr2_3:58705576-58705595 Msa0302090:intron 45.0%
CGAACTGGGTGAACATTTCT+TGG - chr2_3:58705805-58705824 Msa0302090:CDS 45.0%
!! TATAATTATATATATAAACT+TGG - chr2_3:58704984-58705003 Msa0302090:intron 5.0%
!! ATAATTATATATATAAACTT+GGG - chr2_3:58704985-58705004 Msa0302090:intron 5.0%
CTGAAACGACGTCGTTGGAT+AGG + chr2_3:58702551-58702570 None:intergenic 50.0%
ATCCAACGACGTCGTTTCAG+AGG - chr2_3:58702551-58702570 Msa0302090:intron 50.0%
ATATGGGTCCCAACGCATCA+AGG - chr2_3:58702781-58702800 Msa0302090:intron 50.0%
AGGGCGCGTGAGAAATCAAT+AGG - chr2_3:58702928-58702947 Msa0302090:intron 50.0%
GGGCGCGTGAGAAATCAATA+GGG - chr2_3:58702929-58702948 Msa0302090:intron 50.0%
GGAAGAACTCTCTGAGCTTC+AGG - chr2_3:58703988-58704007 Msa0302090:intron 50.0%
GTGAGCTTAGCTCAGTTGGT+TGG - chr2_3:58704379-58704398 Msa0302090:intron 50.0%
GTTCACCGTCAACCCTACAT+AGG - chr2_3:58704459-58704478 Msa0302090:CDS 50.0%
ACTGCCCTATGTAGGGTTGA+CGG + chr2_3:58704467-58704486 None:intergenic 50.0%
GTTGCACCGAATATAGGCTC+AGG + chr2_3:58704548-58704567 None:intergenic 50.0%
GTCATTGACATCTGGTCAGC+TGG - chr2_3:58704581-58704600 Msa0302090:CDS 50.0%
! TGGTGAACTTTTGCTTGGCC+AGG - chr2_3:58704613-58704632 Msa0302090:CDS 50.0%
GAGTGGAGTAGACCAACTTG+TGG - chr2_3:58704739-58704758 Msa0302090:intron 50.0%
!!! AGGTTTTAGGTACCCCAACC+AGG - chr2_3:58704925-58704944 Msa0302090:intron 50.0%
!!! GGTTTTAGGTACCCCAACCA+GGG - chr2_3:58704926-58704945 Msa0302090:intron 50.0%
ATCAATCTCTCCCCCAGAGT+AGG - chr2_3:58705771-58705790 Msa0302090:CDS 50.0%
TCCAACTTGACCTACTCTGG+GGG + chr2_3:58705784-58705803 None:intergenic 50.0%
GTCCAACTTGACCTACTCTG+GGG + chr2_3:58705785-58705804 None:intergenic 50.0%
GGTCCAACTTGACCTACTCT+GGG + chr2_3:58705786-58705805 None:intergenic 50.0%
!! TAGGTCAAGTTGGACCGAAC+TGG - chr2_3:58705790-58705809 Msa0302090:CDS 50.0%
!! AGGTCAAGTTGGACCGAACT+GGG - chr2_3:58705791-58705810 Msa0302090:CDS 50.0%
!! TGCCTCTGAAACGACGTCGT+TGG + chr2_3:58702556-58702575 None:intergenic 55.0%
TGGGCAAATGTCAGGCCTAG+TGG + chr2_3:58703957-58703976 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG + chr2_3:58704378-58704397 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - chr2_3:58704375-58704394 Msa0302090:intron 55.0%
TGGTCAGCTGGTTGCGTACT+TGG - chr2_3:58704593-58704612 Msa0302090:CDS 55.0%
CCACTCTCACCAGGAAACAG+TGG + chr2_3:58704725-58704744 None:intergenic 55.0%
CCACTGTTTCCTGGTGAGAG+TGG - chr2_3:58704722-58704741 Msa0302090:intron 55.0%
TGGTCTACTCCACTCTCACC+AGG + chr2_3:58704734-58704753 None:intergenic 55.0%
TCCCCCAGAGTAGGTCAAGT+TGG - chr2_3:58705780-58705799 Msa0302090:CDS 55.0%
CGGTCCAACTTGACCTACTC+TGG + chr2_3:58705787-58705806 None:intergenic 55.0%
AAGGTCCGGGGTTCGATTCC+CGG - chr2_3:58704421-58704440 Msa0302090:intron 60.0%
GGTGGCCGGGAATCGAACCC+CGG + chr2_3:58704429-58704448 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 58702399 58706062 58702399 ID=Msa0302090;Name=Msa0302090
chr2_3 mRNA 58702399 58706062 58702399 ID=Msa0302090-mRNA-1;Parent=Msa0302090;Name=Msa0302090-mRNA-1;_AED=0.19;_eAED=0.19;_QI=80|0.5|0.57|0.71|1|1|7|0|295
chr2_3 exon 58702399 58702471 58702399 ID=Msa0302090-mRNA-1:exon:18991;Parent=Msa0302090-mRNA-1
chr2_3 exon 58703479 58703534 58703479 ID=Msa0302090-mRNA-1:exon:18990;Parent=Msa0302090-mRNA-1
chr2_3 exon 58703689 58703739 58703689 ID=Msa0302090-mRNA-1:exon:18989;Parent=Msa0302090-mRNA-1
chr2_3 exon 58703827 58703929 58703827 ID=Msa0302090-mRNA-1:exon:18988;Parent=Msa0302090-mRNA-1
chr2_3 exon 58704320 58704372 58704320 ID=Msa0302090-mRNA-1:exon:18987;Parent=Msa0302090-mRNA-1
chr2_3 exon 58704452 58704679 58704452 ID=Msa0302090-mRNA-1:exon:18986;Parent=Msa0302090-mRNA-1
chr2_3 exon 58705659 58706062 58705659 ID=Msa0302090-mRNA-1:exon:18985;Parent=Msa0302090-mRNA-1
chr2_3 five_prime_UTR 58705983 58706062 58705983 ID=Msa0302090-mRNA-1:five_prime_utr;Parent=Msa0302090-mRNA-1
chr2_3 CDS 58705659 58705982 58705659 ID=Msa0302090-mRNA-1:cds;Parent=Msa0302090-mRNA-1
chr2_3 CDS 58704452 58704679 58704452 ID=Msa0302090-mRNA-1:cds;Parent=Msa0302090-mRNA-1
chr2_3 CDS 58704320 58704372 58704320 ID=Msa0302090-mRNA-1:cds;Parent=Msa0302090-mRNA-1
chr2_3 CDS 58703827 58703929 58703827 ID=Msa0302090-mRNA-1:cds;Parent=Msa0302090-mRNA-1
chr2_3 CDS 58703689 58703739 58703689 ID=Msa0302090-mRNA-1:cds;Parent=Msa0302090-mRNA-1
chr2_3 CDS 58703479 58703534 58703479 ID=Msa0302090-mRNA-1:cds;Parent=Msa0302090-mRNA-1
chr2_3 CDS 58702399 58702471 58702399 ID=Msa0302090-mRNA-1:cds;Parent=Msa0302090-mRNA-1
Gene Sequence

>Msa0302090

ATGACTACAGTTGCAACAACACAACCATGTTATTCATCATGGACTCGTGGTTCAATTCCCAGTTCAATTCCTATCCAACGACGTCGTTTCAGAGGCAAAACCAACCTCAAACGTCTCAAAATTCTTGCTGCTGTGGTGGAAGAAACAACACCTACAAGTAACATCGTACCTTTGGTTAGAAATGGAACAAACCATGTTCTTACACTTCCATTGAACCGTGCTGATGATATTCAAGCTGAGGCTAGAGCTATGACACGTGCTATTAATGCTACTCTGTATAGTCCTGAATTGTTGGCTTCTAAATATGGGTCCCAACGCATCAAGGTTGTACAAAGGGCTGTTGAAATTATGAGTGCTTTGGGTTCATTTGGGTTGAAACTGTTTTTAGAGCAAAAGAATGGGACACTTGATAAGAATAAAAAGGCACGTGCTACTGAATTGAAGACCATATTCACAAATTTGGGACCAACTTTTGTGAAGTTAGGTCAAGGATTGTCCACTAGGCCTGACATTTGCCCACCTGAATATTTGGAAGAACTCTCTGAGCTTCAGGACATAACAGAATTAGGTGTTCTGATTTTGTGCGATTTGAAAATGTGGCCAGGGTACTATAGAGCTCCTGAGCCTATATTCGGTGCAACTGAGTACACCACAGTCATTGACATCTGGTCAGCTGGTTGCGTACTTGGTGAACTTTTGCTTGGCCAGCCACTGTTTCCTGGTGAGAGTGGAGTAGACCAACTTGTGGAAATTATCAAGGTTTTAGGTACCCCAACCAGGGAAGAAATCAAGTGCATGAATCCTAATTATACTAGTTTGTATTGGTGTGATTTTGAGTCTGGAATTCACAACATGAGTAATAGTGATGCTTTAACTTCTAAGTATTAG
Protein sequence

>Msa0302090

MTTVATTQPCYSSWTRGSIPSSIPIQRRRFRGKTNLKRLKILAAVVEETTPTSNIVPLVRNGTNHVLTLPLNRADDIQAEARAMTRAINATLYSPELLASKYGSQRIKVVQRAVEIMSALGSFGLKLFLEQKNGTLDKNKKARATELKTIFTNLGPTFVKLGQGLSTRPDICPPEYLEELSELQDITELGVLILCDLKMWPGYYRAPEPIFGATEYTTVIDIWSAGCVLGELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTSLYWCDFESGIHNMSNSDALTSKY*