AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0222720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0222720 MtrunA17_Chr2g0327771 91.339 508 14 2 1 479 1 507 0.0 939
Msa0222720 MtrunA17_Chr4g0050151 68.052 385 122 1 92 476 129 512 0.0 555
Msa0222720 MtrunA17_Chr2g0279401 68.041 388 123 1 92 479 136 522 0.0 554
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0222720 AT5G59750.2 78.920 389 82 0 90 478 148 536 0.0 651
Msa0222720 AT5G59750.1 65.107 513 132 7 1 478 2 502 0.0 650
Msa0222720 AT5G64300.1 69.610 385 116 1 92 476 143 526 0.0 567
Msa0222720 AT5G59750.3 62.009 458 127 7 1 423 2 447 0.0 542
Msa0222720 AT2G22450.1 60.055 363 136 3 92 454 121 474 4.30e-152 442

Find 110 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAAATTTGTTGGTCTAAA+AGG 0.157959 2_1:+72085005 Msa0222720:CDS
TGTTTAACTGGGGATATATT+TGG 0.172347 2_1:+72084146 Msa0222720:CDS
TGTCACATCTTCCTACTAAA+TGG 0.198867 2_1:+72083884 Msa0222720:CDS
TATTGTTAGGATGCAAAATA+TGG 0.229542 2_1:+72083349 Msa0222720:intron
ACCAAAATGGGTCATATCTA+TGG 0.241057 2_1:+72085110 Msa0222720:CDS
ACCTTGATCTTGCAAATTAT+AGG 0.252533 2_1:-72084300 None:intergenic
GAACAACAAGGTGAGAAATT+TGG 0.257120 2_1:+72082518 Msa0222720:CDS
CCCATAGATATGACCCATTT+TGG 0.264968 2_1:-72085111 None:intergenic
TACTGAGGCTTCTGTAGATT+TGG 0.288351 2_1:+72083519 Msa0222720:CDS
GTCCAAGCAAACATAGATTT+GGG 0.316048 2_1:+72084332 Msa0222720:CDS
AGTCCAAGCAAACATAGATT+TGG 0.316830 2_1:+72084331 Msa0222720:CDS
GTACATTCAGAATGTTTAAC+TGG 0.320458 2_1:+72084134 Msa0222720:CDS
TTTGTTGGTCTAAAAGGATA+TGG 0.325230 2_1:+72085011 Msa0222720:CDS
ATCTATGGGTCTGATATATA+AGG 0.326183 2_1:+72085125 Msa0222720:CDS
CGCTTGTTTGCTTCAGTGAT+TGG 0.328210 2_1:-72085068 None:intergenic
CCACCATTTCTATACTTAAG+AGG 0.347032 2_1:-72083475 None:intergenic
ATAAAATATGTACCTTGAAT+TGG 0.360216 2_1:-72082366 None:intergenic
TGATGTTGAAGATGGAAATA+TGG 0.367048 2_1:+72083588 Msa0222720:CDS
TCGGAGAAAACGAGAGAAAT+TGG 0.372980 2_1:+72083846 Msa0222720:CDS
TTCTGTAGATTTGGTTGCAT+TGG 0.388739 2_1:+72083528 Msa0222720:CDS
GTAGATTTGGTTGCATTGGC+AGG 0.388977 2_1:+72083532 Msa0222720:CDS
GTCACATCTTCCTACTAAAT+GGG 0.389348 2_1:+72083885 Msa0222720:CDS
AAATCAGTTATTGAAACAAT+TGG 0.389681 2_1:-72083655 None:intergenic
ACTCATCATAGTGTAAGATT+TGG 0.392279 2_1:+72082489 Msa0222720:CDS
TCATAGCCAAATCTAGTTGC+TGG 0.393601 2_1:-72084190 None:intergenic
TTTCAATAACTGATTTGATA+AGG 0.394612 2_1:+72083662 Msa0222720:CDS
AGAGCTGTGAGAACAGAAAA+TGG 0.400675 2_1:-72083562 None:intergenic
AACAATCCAGCAAAATTTGT+TGG 0.402087 2_1:+72084996 Msa0222720:CDS
TTTCCTCTTAAGTATAGAAA+TGG 0.404838 2_1:+72083472 Msa0222720:CDS
TTATTTGGTGTCCCTGCCTA+TGG 0.410956 2_1:+72082301 Msa0222720:exon
ATGTGTTCTTCGATGAATCT+TGG 0.421814 2_1:-72085173 None:intergenic
AAGTCCTCGGATTTCGACTC+TGG 0.423258 2_1:-72083430 None:intergenic
CTGTGGCCAGCAACTAGATT+TGG 0.426292 2_1:+72084184 Msa0222720:CDS
TGAAATAGACCCCATTTAGT+AGG 0.431751 2_1:-72083895 None:intergenic
GAAGGAAGAGGCATTGGGTT+AGG 0.438985 2_1:+72084263 Msa0222720:CDS
GAATCCTCTTCTTCAGTCTC+AGG 0.446487 2_1:-72083209 None:intergenic
TTCTCACCTTGTTGTTCCAC+AGG 0.446496 2_1:-72082512 None:intergenic
ACCCCAAATCTATGTTTGCT+TGG 0.446947 2_1:-72084334 None:intergenic
TGTTGAAGGGAATCTTATAA+AGG 0.455110 2_1:+72083070 Msa0222720:CDS
TTTATGATTAAACATGGATC+AGG 0.455192 2_1:+72083125 Msa0222720:CDS
AGCGTTACCTAGAAACAAAA+AGG 0.456329 2_1:+72085087 Msa0222720:CDS
GCTGTTGATGCTCGTGAGTA+TGG 0.457469 2_1:+72084359 Msa0222720:CDS
ATGAAATTGATTGAAGAAGC+TGG 0.460792 2_1:+72084209 Msa0222720:CDS
GATGAAAACAACAATGTTGA+AGG 0.466495 2_1:+72083056 Msa0222720:CDS
GGTCATGAAGGAAGAGGCAT+TGG 0.482864 2_1:+72084257 Msa0222720:CDS
TTGGTTGCTTAGGGAAACAT+AGG 0.482975 2_1:+72084086 Msa0222720:intron
CCACTGTGATAGTGAAAGTA+GGG 0.484212 2_1:-72083238 None:intergenic
AATCATAAATGCCACATCCT+TGG 0.486532 2_1:-72083111 None:intergenic
GCCTATAATTTGCAAGATCA+AGG 0.487252 2_1:+72084299 Msa0222720:CDS
GGAGTAATTGTGTATCTTAG+AGG 0.493061 2_1:+72084236 Msa0222720:CDS
ATAGAAATGGTGGAGTGCTT+AGG 0.494926 2_1:+72083485 Msa0222720:CDS
CCCACGTCATCACCAATTCA+AGG 0.497388 2_1:+72082354 Msa0222720:CDS
TGAGTATGGCATTGGTGCCC+AGG 0.497742 2_1:+72084373 Msa0222720:CDS
ACGTGGGAAATCAAAGGACT+AGG 0.503550 2_1:-72082338 None:intergenic
GCTCTTGTTGATGTTGAAGA+TGG 0.508607 2_1:+72083580 Msa0222720:CDS
TTGATTGAAGAAGCTGGAAG+AGG 0.514495 2_1:+72084215 Msa0222720:CDS
TGGAACTTCCACGGGTGTAT+CGG 0.515831 2_1:+72083369 Msa0222720:CDS
CCTCTTAAGTATAGAAATGG+TGG 0.517951 2_1:+72083475 Msa0222720:CDS
GGTGGAGTGCTTAGGAGAGC+TGG 0.520674 2_1:+72083493 Msa0222720:CDS
TGTTATAGTTCAAAGTTGGA+TGG 0.520999 2_1:+72083925 Msa0222720:CDS
GCTTAGGGAAACATAGGAGA+TGG 0.523904 2_1:+72084092 Msa0222720:intron
ATATTGTTATAGTTCAAAGT+TGG 0.524855 2_1:+72083921 Msa0222720:CDS
TCAGTCTCAGGTGACATAAG+AGG 0.529829 2_1:-72083197 None:intergenic
GGGAATGAAGCAGAGTCCAT+AGG 0.530818 2_1:-72082317 None:intergenic
GGATATGGTTTAGCTGTGAC+AGG 0.532359 2_1:+72085026 Msa0222720:CDS
GCAAAATATGGAACTTCCAC+GGG 0.535098 2_1:+72083361 Msa0222720:CDS
ACATTGGAGTTCGAACTATG+AGG 0.535750 2_1:+72084964 Msa0222720:CDS
CCAAAATGGGTCATATCTAT+GGG 0.544969 2_1:+72085111 Msa0222720:CDS
TATTTATTCAAAGCTTGCAT+CGG 0.545583 2_1:+72082457 Msa0222720:intron
GGATCAGGAATAGTTTCTGT+TGG 0.545719 2_1:+72083140 Msa0222720:CDS
ATGAAGCAGAGTCCATAGGC+AGG 0.546682 2_1:-72082313 None:intergenic
TCAGTGATTGGTGTTAGCAC+AGG 0.547814 2_1:-72085056 None:intergenic
GTCACCTGAGACTGAAGAAG+AGG 0.559881 2_1:+72083205 Msa0222720:CDS
TGAGCATGTGGCTGTTGTAA+AGG 0.560783 2_1:+72083951 Msa0222720:CDS
CTTAGAGGTCATGAAGGAAG+AGG 0.564446 2_1:+72084251 Msa0222720:CDS
CGTGGGAAATCAAAGGACTA+GGG 0.566760 2_1:-72082337 None:intergenic
TCTTGTTAGTACCAAGGATG+TGG 0.568018 2_1:+72083100 Msa0222720:CDS
TGCAAAATATGGAACTTCCA+CGG 0.569828 2_1:+72083360 Msa0222720:CDS
TTCTGTTGGCATGAAAGAAG+AGG 0.576477 2_1:+72083154 Msa0222720:CDS
TTCCACGGGTGTATCGGCTG+CGG 0.588754 2_1:+72083375 Msa0222720:CDS
ACCACTGTGATAGTGAAAGT+AGG 0.590650 2_1:-72083239 None:intergenic
GTCATGAAGGAAGAGGCATT+GGG 0.591268 2_1:+72084258 Msa0222720:CDS
ATGAAAACAACAATGTTGAA+GGG 0.595372 2_1:+72083057 Msa0222720:CDS
TACATTCAGAATGTTTAACT+GGG 0.597083 2_1:+72084135 Msa0222720:CDS
CTTAGGGAAACATAGGAGAT+GGG 0.597548 2_1:+72084093 Msa0222720:intron
GATGCTCGTGAGTATGGCAT+TGG 0.608440 2_1:+72084365 Msa0222720:CDS
GTGTATCTTAGAGGTCATGA+AGG 0.608731 2_1:+72084245 Msa0222720:CDS
GGGATATATTTGGATCAGCT+CGG 0.611108 2_1:+72084156 Msa0222720:CDS
GTGGCATTTATGATTAAACA+TGG 0.613664 2_1:+72083119 Msa0222720:CDS
TCCGAGGACTTAAGAAAACC+AGG 0.619694 2_1:+72083442 Msa0222720:CDS
ATCCGCAGCCGATACACCCG+TGG 0.629180 2_1:-72083377 None:intergenic
ATTTGGCCTGTGGAACAACA+AGG 0.634139 2_1:+72082506 Msa0222720:CDS
ATAGTGTAAGATTTGGCCTG+TGG 0.635119 2_1:+72082496 Msa0222720:CDS
TCACATCTTCCTACTAAATG+GGG 0.639715 2_1:+72083886 Msa0222720:CDS
AGCATCTCTTGTTAGTACCA+AGG 0.640073 2_1:+72083094 Msa0222720:CDS
GAAGACGTGTTTGATGATAG+TGG 0.645204 2_1:+72082576 Msa0222720:CDS
TGAAGCAGAGTCCATAGGCA+GGG 0.649337 2_1:-72082312 None:intergenic
GTGATGACGTGGGAAATCAA+AGG 0.652787 2_1:-72082344 None:intergenic
ACCTTGAATTGGTGATGACG+TGG 0.653143 2_1:-72082355 None:intergenic
GGATCAGCTCGGTGTGACTG+TGG 0.657027 2_1:+72084167 Msa0222720:CDS
TCCAAGCAAACATAGATTTG+GGG 0.659816 2_1:+72084333 Msa0222720:CDS
TCTCAGGTGACATAAGAGGA+AGG 0.670240 2_1:-72083193 None:intergenic
ATCTCCAGAGTCGAAATCCG+AGG 0.671355 2_1:+72083426 Msa0222720:CDS
CACTGTGATAGTGAAAGTAG+GGG 0.673445 2_1:-72083237 None:intergenic
TAGGAGAGCTGGTCATACTG+AGG 0.694929 2_1:+72083504 Msa0222720:CDS
ACATTCAGAATGTTTAACTG+GGG 0.696460 2_1:+72084136 Msa0222720:CDS
GTTGGATGGAACTGAGCATG+TGG 0.707210 2_1:+72083939 Msa0222720:CDS
CCTTGAATTGGTGATGACGT+GGG 0.735027 2_1:-72082354 None:intergenic
GCTGTGAGAACAGAAAATGG+TGG 0.741200 2_1:-72083559 None:intergenic
CCCTACTTTCACTATCACAG+TGG 0.748231 2_1:+72083238 Msa0222720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCTAAGAATTTTTATT+TGG + chr2_1:72082286-72082305 Msa0222720:five_prime_UTR 10.0%
!! TCAAAAAAAAATATTGATAT+AGG - chr2_1:72083016-72083035 None:intergenic 10.0%
!!! GTTTTTGTTTTTTTAAAATT+CGG - chr2_1:72084515-72084534 None:intergenic 10.0%
!!! ACTTTTAAAATAATATTCAA+AGG + chr2_1:72085233-72085252 Msa0222720:three_prime_UTR 10.0%
!! TTGTGTAATATATTATTGTT+AGG + chr2_1:72083336-72083355 Msa0222720:intron 15.0%
!! TCTGAATTATAATTTCTTAT+TGG + chr2_1:72084067-72084086 Msa0222720:intron 15.0%
!! ATAAAATATGTACCTTGAAT+TGG - chr2_1:72082369-72082388 None:intergenic 20.0%
!! GATTTGAAGAAAAATGAAAA+TGG + chr2_1:72082600-72082619 Msa0222720:CDS 20.0%
!!! GATGACATTTTATTAAGTAA+TGG + chr2_1:72082967-72082986 Msa0222720:intron 20.0%
!!! AATGCTAAGTTTTTTAAACT+GGG - chr2_1:72083622-72083641 None:intergenic 20.0%
!! AAATCAGTTATTGAAACAAT+TGG - chr2_1:72083658-72083677 None:intergenic 20.0%
!!! TTTCAATAACTGATTTGATA+AGG + chr2_1:72083662-72083681 Msa0222720:CDS 20.0%
!! ATATTGTTATAGTTCAAAGT+TGG + chr2_1:72083921-72083940 Msa0222720:CDS 20.0%
!! ATCTACTAATCAACATTTAT+TGG - chr2_1:72084693-72084712 None:intergenic 20.0%
!!! TGTAAAACATTTTTGAATGT+TGG + chr2_1:72084796-72084815 Msa0222720:intron 20.0%
!! GAAATATTGCAAATTATACA+AGG - chr2_1:72084870-72084889 None:intergenic 20.0%
!!! GGTACATATTTTATTTCTCT+AGG + chr2_1:72082375-72082394 Msa0222720:intron 25.0%
! TAGAGGAACAATTAATATAG+TGG - chr2_1:72082408-72082427 None:intergenic 25.0%
! TATTTATTCAAAGCTTGCAT+CGG + chr2_1:72082457-72082476 Msa0222720:intron 25.0%
!!! AATTTGGCTTTTTATGCTAT+TGG + chr2_1:72082534-72082553 Msa0222720:CDS 25.0%
!!! ATTTGGCTTTTTATGCTATT+GGG + chr2_1:72082535-72082554 Msa0222720:CDS 25.0%
! ATGAAAACAACAATGTTGAA+GGG + chr2_1:72083057-72083076 Msa0222720:CDS 25.0%
! TTTATGATTAAACATGGATC+AGG + chr2_1:72083125-72083144 Msa0222720:CDS 25.0%
! TATATGCAACAATCTACATT+AGG - chr2_1:72083293-72083312 None:intergenic 25.0%
! TATTGTTAGGATGCAAAATA+TGG + chr2_1:72083349-72083368 Msa0222720:intron 25.0%
! TTTCCTCTTAAGTATAGAAA+TGG + chr2_1:72083472-72083491 Msa0222720:CDS 25.0%
!!! CAATGCTAAGTTTTTTAAAC+TGG - chr2_1:72083623-72083642 None:intergenic 25.0%
! CAGTTTAAAAAACTTAGCAT+TGG + chr2_1:72083621-72083640 Msa0222720:CDS 25.0%
!!! TACTATTCTTTAGTTTGCTT+AGG - chr2_1:72084043-72084062 None:intergenic 25.0%
!! TAATTTCTTATTGGTTGCTT+AGG + chr2_1:72084076-72084095 Msa0222720:intron 25.0%
!! AATTTCTTATTGGTTGCTTA+GGG + chr2_1:72084077-72084096 Msa0222720:intron 25.0%
! TACATTCAGAATGTTTAACT+GGG + chr2_1:72084135-72084154 Msa0222720:CDS 25.0%
! TAATGATCAACTAAAGTAGA+TGG + chr2_1:72084447-72084466 Msa0222720:intron 25.0%
! TACTAATCAACATTTATTGG+TGG - chr2_1:72084690-72084709 None:intergenic 25.0%
! GATTTGTATTCACTAATACT+AGG - chr2_1:72084843-72084862 None:intergenic 25.0%
!!! CAACTTATAATAGCTTGTTT+TGG - chr2_1:72084916-72084935 None:intergenic 25.0%
AACATGAGTTCAACAAATAG+AGG - chr2_1:72082425-72082444 None:intergenic 30.0%
ACTCATCATAGTGTAAGATT+TGG + chr2_1:72082489-72082508 Msa0222720:CDS 30.0%
! TTATGCTATTGGGTTTTCTA+AGG + chr2_1:72082545-72082564 Msa0222720:CDS 30.0%
GATGAAAACAACAATGTTGA+AGG + chr2_1:72083056-72083075 Msa0222720:CDS 30.0%
TGTTGAAGGGAATCTTATAA+AGG + chr2_1:72083070-72083089 Msa0222720:CDS 30.0%
GTGGCATTTATGATTAAACA+TGG + chr2_1:72083119-72083138 Msa0222720:CDS 30.0%
TGATGTTGAAGATGGAAATA+TGG + chr2_1:72083588-72083607 Msa0222720:CDS 30.0%
TGTTATAGTTCAAAGTTGGA+TGG + chr2_1:72083925-72083944 Msa0222720:CDS 30.0%
GTACATTCAGAATGTTTAAC+TGG + chr2_1:72084134-72084153 Msa0222720:CDS 30.0%
ACATTCAGAATGTTTAACTG+GGG + chr2_1:72084136-72084155 Msa0222720:CDS 30.0%
TGTTTAACTGGGGATATATT+TGG + chr2_1:72084146-72084165 Msa0222720:CDS 30.0%
ATGAAATTGATTGAAGAAGC+TGG + chr2_1:72084209-72084228 Msa0222720:CDS 30.0%
ACCTTGATCTTGCAAATTAT+AGG - chr2_1:72084303-72084322 None:intergenic 30.0%
GTGATTAAAAGATCTAACCT+GGG - chr2_1:72084393-72084412 None:intergenic 30.0%
AGTGATTAAAAGATCTAACC+TGG - chr2_1:72084394-72084413 None:intergenic 30.0%
ACTAAAGTAGATGGTATGAT+TGG + chr2_1:72084456-72084475 Msa0222720:intron 30.0%
! GTGCATAAGTATTGTTCAAT+TGG - chr2_1:72084766-72084785 None:intergenic 30.0%
TGAACAATACTTATGCACTT+CGG + chr2_1:72084768-72084787 Msa0222720:intron 30.0%
! TGATAAATGTGCAGATTTTG+AGG + chr2_1:72084940-72084959 Msa0222720:intron 30.0%
! GATAAATGTGCAGATTTTGA+GGG + chr2_1:72084941-72084960 Msa0222720:intron 30.0%
AACAATCCAGCAAAATTTGT+TGG + chr2_1:72084996-72085015 Msa0222720:CDS 30.0%
! TTTAGACCAACAAATTTTGC+TGG - chr2_1:72085005-72085024 None:intergenic 30.0%
!! GCAAAATTTGTTGGTCTAAA+AGG + chr2_1:72085005-72085024 Msa0222720:CDS 30.0%
! TTTGTTGGTCTAAAAGGATA+TGG + chr2_1:72085011-72085030 Msa0222720:CDS 30.0%
!! TTTTGGTCCTTTTTGTTTCT+AGG - chr2_1:72085097-72085116 None:intergenic 30.0%
AGAAACAAAAAGGACCAAAA+TGG + chr2_1:72085097-72085116 Msa0222720:CDS 30.0%
GAAACAAAAAGGACCAAAAT+GGG + chr2_1:72085098-72085117 Msa0222720:CDS 30.0%
ATCTATGGGTCTGATATATA+AGG + chr2_1:72085125-72085144 Msa0222720:CDS 30.0%
GAACAACAAGGTGAGAAATT+TGG + chr2_1:72082518-72082537 Msa0222720:CDS 35.0%
!! AGCGTCTAACGTTTTTAAGA+GGG - chr2_1:72082628-72082647 None:intergenic 35.0%
!! TAGCGTCTAACGTTTTTAAG+AGG - chr2_1:72082629-72082648 None:intergenic 35.0%
TTCTTTGTAAGTGAAGCTGA+AGG + chr2_1:72082681-72082700 Msa0222720:intron 35.0%
! AATTCTAGCTAACCTTTCCT+TGG - chr2_1:72082767-72082786 None:intergenic 35.0%
CGTTACGTCTAATACATGTT+TGG + chr2_1:72082798-72082817 Msa0222720:intron 35.0%
AATCATAAATGCCACATCCT+TGG - chr2_1:72083114-72083133 None:intergenic 35.0%
TGCAAAATATGGAACTTCCA+CGG + chr2_1:72083360-72083379 Msa0222720:CDS 35.0%
TTAAGAGGAAAAACATGACC+TGG - chr2_1:72083463-72083482 None:intergenic 35.0%
CCACCATTTCTATACTTAAG+AGG - chr2_1:72083478-72083497 None:intergenic 35.0%
CCTCTTAAGTATAGAAATGG+TGG + chr2_1:72083475-72083494 Msa0222720:CDS 35.0%
! TTCTGTAGATTTGGTTGCAT+TGG + chr2_1:72083528-72083547 Msa0222720:CDS 35.0%
TTAATGTATGTGACGCTTCA+AGG + chr2_1:72083821-72083840 Msa0222720:intron 35.0%
TGTCACATCTTCCTACTAAA+TGG + chr2_1:72083884-72083903 Msa0222720:CDS 35.0%
GTCACATCTTCCTACTAAAT+GGG + chr2_1:72083885-72083904 Msa0222720:CDS 35.0%
TCACATCTTCCTACTAAATG+GGG + chr2_1:72083886-72083905 Msa0222720:CDS 35.0%
TGAAATAGACCCCATTTAGT+AGG - chr2_1:72083898-72083917 None:intergenic 35.0%
GGAGTAATTGTGTATCTTAG+AGG + chr2_1:72084236-72084255 Msa0222720:CDS 35.0%
! GCCTATAATTTGCAAGATCA+AGG + chr2_1:72084299-72084318 Msa0222720:CDS 35.0%
AGTCCAAGCAAACATAGATT+TGG + chr2_1:72084331-72084350 Msa0222720:CDS 35.0%
GTCCAAGCAAACATAGATTT+GGG + chr2_1:72084332-72084351 Msa0222720:CDS 35.0%
TCCAAGCAAACATAGATTTG+GGG + chr2_1:72084333-72084352 Msa0222720:CDS 35.0%
AGATGGTATGATTGGACTTT+CGG + chr2_1:72084464-72084483 Msa0222720:intron 35.0%
AGCGTTACCTAGAAACAAAA+AGG + chr2_1:72085087-72085106 Msa0222720:CDS 35.0%
ACCAAAATGGGTCATATCTA+TGG + chr2_1:72085110-72085129 Msa0222720:CDS 35.0%
CCAAAATGGGTCATATCTAT+GGG + chr2_1:72085111-72085130 Msa0222720:CDS 35.0%
ATGTGTTCTTCGATGAATCT+TGG - chr2_1:72085176-72085195 None:intergenic 35.0%
ATAGTGTAAGATTTGGCCTG+TGG + chr2_1:72082496-72082515 Msa0222720:CDS 40.0%
!!! GCTATTGGGTTTTCTAAGGT+TGG + chr2_1:72082549-72082568 Msa0222720:CDS 40.0%
! GAAGACGTGTTTGATGATAG+TGG + chr2_1:72082576-72082595 Msa0222720:CDS 40.0%
!! ATGGAAGAGTACTCCTTAGA+GGG - chr2_1:72082720-72082739 None:intergenic 40.0%
!! AATGGAAGAGTACTCCTTAG+AGG - chr2_1:72082721-72082740 None:intergenic 40.0%
TCCTTGGCGTAATGCATTAA+GGG - chr2_1:72082751-72082770 None:intergenic 40.0%
TTCCTTGGCGTAATGCATTA+AGG - chr2_1:72082752-72082771 None:intergenic 40.0%
TAATGCATTACGCCAAGGAA+AGG + chr2_1:72082752-72082771 Msa0222720:intron 40.0%
AGCATCTCTTGTTAGTACCA+AGG + chr2_1:72083094-72083113 Msa0222720:CDS 40.0%
TCTTGTTAGTACCAAGGATG+TGG + chr2_1:72083100-72083119 Msa0222720:CDS 40.0%
GGATCAGGAATAGTTTCTGT+TGG + chr2_1:72083140-72083159 Msa0222720:CDS 40.0%
TTCTGTTGGCATGAAAGAAG+AGG + chr2_1:72083154-72083173 Msa0222720:CDS 40.0%
! CACTGTGATAGTGAAAGTAG+GGG - chr2_1:72083240-72083259 None:intergenic 40.0%
! CCACTGTGATAGTGAAAGTA+GGG - chr2_1:72083241-72083260 None:intergenic 40.0%
! ACCACTGTGATAGTGAAAGT+AGG - chr2_1:72083242-72083261 None:intergenic 40.0%
GCAAAATATGGAACTTCCAC+GGG + chr2_1:72083361-72083380 Msa0222720:CDS 40.0%
!! ACCTGGTTTTCTTAAGTCCT+CGG - chr2_1:72083446-72083465 None:intergenic 40.0%
! ATAGAAATGGTGGAGTGCTT+AGG + chr2_1:72083485-72083504 Msa0222720:CDS 40.0%
TACTGAGGCTTCTGTAGATT+TGG + chr2_1:72083519-72083538 Msa0222720:CDS 40.0%
AGAGCTGTGAGAACAGAAAA+TGG - chr2_1:72083565-72083584 None:intergenic 40.0%
GCTCTTGTTGATGTTGAAGA+TGG + chr2_1:72083580-72083599 Msa0222720:CDS 40.0%
TATGTGACGCTTCAAGGTAT+CGG + chr2_1:72083827-72083846 Msa0222720:intron 40.0%
TCGGAGAAAACGAGAGAAAT+TGG + chr2_1:72083846-72083865 Msa0222720:CDS 40.0%
TTGGTTGCTTAGGGAAACAT+AGG + chr2_1:72084086-72084105 Msa0222720:intron 40.0%
CTTAGGGAAACATAGGAGAT+GGG + chr2_1:72084093-72084112 Msa0222720:intron 40.0%
GGGATATATTTGGATCAGCT+CGG + chr2_1:72084156-72084175 Msa0222720:CDS 40.0%
TCATAGCCAAATCTAGTTGC+TGG - chr2_1:72084193-72084212 None:intergenic 40.0%
TTGATTGAAGAAGCTGGAAG+AGG + chr2_1:72084215-72084234 Msa0222720:CDS 40.0%
GTGTATCTTAGAGGTCATGA+AGG + chr2_1:72084245-72084264 Msa0222720:CDS 40.0%
ACCCCAAATCTATGTTTGCT+TGG - chr2_1:72084337-72084356 None:intergenic 40.0%
!! ACATTTATTGGTGGCGAGTT+TGG - chr2_1:72084681-72084700 None:intergenic 40.0%
ACATTGGAGTTCGAACTATG+AGG + chr2_1:72084964-72084983 Msa0222720:CDS 40.0%
! CCCATAGATATGACCCATTT+TGG - chr2_1:72085114-72085133 None:intergenic 40.0%
!! TTATTTGGTGTCCCTGCCTA+TGG + chr2_1:72082301-72082320 Msa0222720:exon 45.0%
CGTGGGAAATCAAAGGACTA+GGG - chr2_1:72082340-72082359 None:intergenic 45.0%
ACGTGGGAAATCAAAGGACT+AGG - chr2_1:72082341-72082360 None:intergenic 45.0%
! GTGATGACGTGGGAAATCAA+AGG - chr2_1:72082347-72082366 None:intergenic 45.0%
!! CCTTGAATTGGTGATGACGT+GGG - chr2_1:72082357-72082376 None:intergenic 45.0%
!! ACCTTGAATTGGTGATGACG+TGG - chr2_1:72082358-72082377 None:intergenic 45.0%
ATTTGGCCTGTGGAACAACA+AGG + chr2_1:72082506-72082525 Msa0222720:CDS 45.0%
!! TTCTCACCTTGTTGTTCCAC+AGG - chr2_1:72082515-72082534 None:intergenic 45.0%
TGATCCAGATTGTCCCTCTA+AGG + chr2_1:72082704-72082723 Msa0222720:intron 45.0%
TACTCCTTAGAGGGACAATC+TGG - chr2_1:72082711-72082730 None:intergenic 45.0%
! TGCATTAAGGGCATGCTCAA+TGG - chr2_1:72082739-72082758 None:intergenic 45.0%
TCTCAGGTGACATAAGAGGA+AGG - chr2_1:72083196-72083215 None:intergenic 45.0%
TCAGTCTCAGGTGACATAAG+AGG - chr2_1:72083200-72083219 None:intergenic 45.0%
GAATCCTCTTCTTCAGTCTC+AGG - chr2_1:72083212-72083231 None:intergenic 45.0%
CCCTACTTTCACTATCACAG+TGG + chr2_1:72083238-72083257 Msa0222720:CDS 45.0%
TCCGAGGACTTAAGAAAACC+AGG + chr2_1:72083442-72083461 Msa0222720:CDS 45.0%
! GTAGATTTGGTTGCATTGGC+AGG + chr2_1:72083532-72083551 Msa0222720:CDS 45.0%
GCTGTGAGAACAGAAAATGG+TGG - chr2_1:72083562-72083581 None:intergenic 45.0%
TGAGCATGTGGCTGTTGTAA+AGG + chr2_1:72083951-72083970 Msa0222720:CDS 45.0%
GCTTAGGGAAACATAGGAGA+TGG + chr2_1:72084092-72084111 Msa0222720:intron 45.0%
CTTAGAGGTCATGAAGGAAG+AGG + chr2_1:72084251-72084270 Msa0222720:CDS 45.0%
!! GTCATGAAGGAAGAGGCATT+GGG + chr2_1:72084258-72084277 Msa0222720:CDS 45.0%
!! GTGCAGATTTTGAGGGACAT+TGG + chr2_1:72084948-72084967 Msa0222720:intron 45.0%
GGATATGGTTTAGCTGTGAC+AGG + chr2_1:72085026-72085045 Msa0222720:CDS 45.0%
!! TCAGTGATTGGTGTTAGCAC+AGG - chr2_1:72085059-72085078 None:intergenic 45.0%
CGCTTGTTTGCTTCAGTGAT+TGG - chr2_1:72085071-72085090 None:intergenic 45.0%
TGAAGCAGAGTCCATAGGCA+GGG - chr2_1:72082315-72082334 None:intergenic 50.0%
ATGAAGCAGAGTCCATAGGC+AGG - chr2_1:72082316-72082335 None:intergenic 50.0%
GGGAATGAAGCAGAGTCCAT+AGG - chr2_1:72082320-72082339 None:intergenic 50.0%
CCCACGTCATCACCAATTCA+AGG + chr2_1:72082354-72082373 Msa0222720:CDS 50.0%
GCCCTTAATGCATTACGCCA+AGG + chr2_1:72082747-72082766 Msa0222720:intron 50.0%
GTCACCTGAGACTGAAGAAG+AGG + chr2_1:72083205-72083224 Msa0222720:CDS 50.0%
TGGAACTTCCACGGGTGTAT+CGG + chr2_1:72083369-72083388 Msa0222720:CDS 50.0%
ATCTCCAGAGTCGAAATCCG+AGG + chr2_1:72083426-72083445 Msa0222720:CDS 50.0%
AAGTCCTCGGATTTCGACTC+TGG - chr2_1:72083433-72083452 None:intergenic 50.0%
TAGGAGAGCTGGTCATACTG+AGG + chr2_1:72083504-72083523 Msa0222720:CDS 50.0%
GTTGGATGGAACTGAGCATG+TGG + chr2_1:72083939-72083958 Msa0222720:CDS 50.0%
CTGTGGCCAGCAACTAGATT+TGG + chr2_1:72084184-72084203 Msa0222720:CDS 50.0%
! GGTCATGAAGGAAGAGGCAT+TGG + chr2_1:72084257-72084276 Msa0222720:CDS 50.0%
!! GAAGGAAGAGGCATTGGGTT+AGG + chr2_1:72084263-72084282 Msa0222720:CDS 50.0%
GCTGTTGATGCTCGTGAGTA+TGG + chr2_1:72084359-72084378 Msa0222720:CDS 50.0%
GATGCTCGTGAGTATGGCAT+TGG + chr2_1:72084365-72084384 Msa0222720:CDS 50.0%
!! TGAGTATGGCATTGGTGCCC+AGG + chr2_1:72084373-72084392 Msa0222720:CDS 55.0%
!! TTCCACGGGTGTATCGGCTG+CGG + chr2_1:72083375-72083394 Msa0222720:CDS 60.0%
! GGTGGAGTGCTTAGGAGAGC+TGG + chr2_1:72083493-72083512 Msa0222720:CDS 60.0%
!! GGATCAGCTCGGTGTGACTG+TGG + chr2_1:72084167-72084186 Msa0222720:CDS 60.0%
ATCCGCAGCCGATACACCCG+TGG - chr2_1:72083380-72083399 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 72082263 72085307 72082263 ID=Msa0222720;Name=Msa0222720
chr2_1 mRNA 72082263 72085307 72082263 ID=Msa0222720-mRNA-1;Parent=Msa0222720;Name=Msa0222720-mRNA-1;_AED=0.11;_eAED=0.11;_QI=57|0.83|0.85|1|0.83|0.85|7|162|479
chr2_1 exon 72082263 72082375 72082263 ID=Msa0222720-mRNA-1:exon:20778;Parent=Msa0222720-mRNA-1
chr2_1 exon 72082470 72082686 72082470 ID=Msa0222720-mRNA-1:exon:20779;Parent=Msa0222720-mRNA-1
chr2_1 exon 72083038 72083259 72083038 ID=Msa0222720-mRNA-1:exon:20780;Parent=Msa0222720-mRNA-1
chr2_1 exon 72083358 72083683 72083358 ID=Msa0222720-mRNA-1:exon:20781;Parent=Msa0222720-mRNA-1
chr2_1 exon 72083843 72083972 72083843 ID=Msa0222720-mRNA-1:exon:20782;Parent=Msa0222720-mRNA-1
chr2_1 exon 72084098 72084394 72084098 ID=Msa0222720-mRNA-1:exon:20783;Parent=Msa0222720-mRNA-1
chr2_1 exon 72084954 72085307 72084954 ID=Msa0222720-mRNA-1:exon:20784;Parent=Msa0222720-mRNA-1
chr2_1 five_prime_UTR 72082263 72082319 72082263 ID=Msa0222720-mRNA-1:five_prime_utr;Parent=Msa0222720-mRNA-1
chr2_1 CDS 72082320 72082375 72082320 ID=Msa0222720-mRNA-1:cds;Parent=Msa0222720-mRNA-1
chr2_1 CDS 72082470 72082686 72082470 ID=Msa0222720-mRNA-1:cds;Parent=Msa0222720-mRNA-1
chr2_1 CDS 72083038 72083259 72083038 ID=Msa0222720-mRNA-1:cds;Parent=Msa0222720-mRNA-1
chr2_1 CDS 72083358 72083683 72083358 ID=Msa0222720-mRNA-1:cds;Parent=Msa0222720-mRNA-1
chr2_1 CDS 72083843 72083972 72083843 ID=Msa0222720-mRNA-1:cds;Parent=Msa0222720-mRNA-1
chr2_1 CDS 72084098 72084394 72084098 ID=Msa0222720-mRNA-1:cds;Parent=Msa0222720-mRNA-1
chr2_1 CDS 72084954 72085145 72084954 ID=Msa0222720-mRNA-1:cds;Parent=Msa0222720-mRNA-1
chr2_1 three_prime_UTR 72085146 72085307 72085146 ID=Msa0222720-mRNA-1:three_prime_utr;Parent=Msa0222720-mRNA-1
Gene Sequence

>Msa0222720

ATGGACTCTGCTTCATTCCCTAGTCCTTTGATTTCCCACGTCATCACCAATTCAAGCTTGCATCGGTCATGCACTACTCATCATAGTGTAAGATTTGGCCTGTGGAACAACAAGGTGAGAAATTTGGCTTTTTATGCTATTGGGTTTTCTAAGGTTGGAACTGAAGACGTGTTTGATGATAGTGGTGATTTGAAGAAAAATGAAAATGGATCCCTCTTAAAAACGTTAGACGCTACAAATGAAATAACTGATCAAGAAAATAGCGATTTCTTTTTTGTAATCGTTGTAGATGATGAAAACAACAATGTTGAAGGGAATCTTATAAAGGCAGCATCTCTTGTTAGTACCAAGGATGTGGCATTTATGATTAAACATGGATCAGGAATAGTTTCTGTTGGCATGAAAGAAGAGGATCTTCAAAGATTAAACCTTCCTCTTATGTCACCTGAGACTGAAGAAGAGGATTCATCTGCCCCTACTTTCACTATCACAGTGGATGCAAAATATGGAACTTCCACGGGTGTATCGGCTGCGGATAGAGCAAAAACAATTCTTGCTTTATCATCTCCAGAGTCGAAATCCGAGGACTTAAGAAAACCAGGTCATGTTTTTCCTCTTAAGTATAGAAATGGTGGAGTGCTTAGGAGAGCTGGTCATACTGAGGCTTCTGTAGATTTGGTTGCATTGGCAGGCTTGCCACCATTTTCTGTTCTCACAGCTCTTGTTGATGTTGAAGATGGAAATATGGCATCTTTGCCCAGTTTAAAAAACTTAGCATTGGAATATAACTTACCAATTGTTTCAATAACTGATTTGATAAGGTATCGGAGAAAACGAGAGAAATTGGTTGAAAGAACTTATGTGTCACATCTTCCTACTAAATGGGGTCTATTTCAAGCATATTGTTATAGTTCAAAGTTGGATGGAACTGAGCATGTGGCTGTTGTAAAGGGAAACATAGGAGATGGGCAAGATGTTCTAGTAAGAGTACATTCAGAATGTTTAACTGGGGATATATTTGGATCAGCTCGGTGTGACTGTGGCCAGCAACTAGATTTGGCTATGAAATTGATTGAAGAAGCTGGAAGAGGAGTAATTGTGTATCTTAGAGGTCATGAAGGAAGAGGCATTGGGTTAGGTCACAAACTTCAAGCCTATAATTTGCAAGATCAAGGTCGTGATACAGTCCAAGCAAACATAGATTTGGGGTTAGCTGTTGATGCTCGTGAGTATGGCATTGGTGCCCAGATTTTGAGGGACATTGGAGTTCGAACTATGAGGTTGATGACAAACAATCCAGCAAAATTTGTTGGTCTAAAAGGATATGGTTTAGCTGTGACAGGTCGTGTTCCTGTGCTAACACCAATCACTGAAGCAAACAAGCGTTACCTAGAAACAAAAAGGACCAAAATGGGTCATATCTATGGGTCTGATATATAA

Protein sequence

>Msa0222720

MDSASFPSPLISHVITNSSLHRSCTTHHSVRFGLWNNKVRNLAFYAIGFSKVGTEDVFDDSGDLKKNENGSLLKTLDATNEITDQENSDFFFVIVVDDENNNVEGNLIKAASLVSTKDVAFMIKHGSGIVSVGMKEEDLQRLNLPLMSPETEEEDSSAPTFTITVDAKYGTSTGVSAADRAKTILALSSPESKSEDLRKPGHVFPLKYRNGGVLRRAGHTEASVDLVALAGLPPFSVLTALVDVEDGNMASLPSLKNLALEYNLPIVSITDLIRYRRKREKLVERTYVSHLPTKWGLFQAYCYSSKLDGTEHVAVVKGNIGDGQDVLVRVHSECLTGDIFGSARCDCGQQLDLAMKLIEEAGRGVIVYLRGHEGRGIGLGHKLQAYNLQDQGRDTVQANIDLGLAVDAREYGIGAQILRDIGVRTMRLMTNNPAKFVGLKGYGLAVTGRVPVLTPITEANKRYLETKRTKMGHIYGSDI*