AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0041780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0041780 MtrunA17_Chr1g0207341 96.774 372 12 0 1 372 1 372 0.0 755
Msa0041780 MtrunA17_Chr7g0272191 42.791 215 114 3 125 337 86 293 9.10e-42 149
Msa0041780 MtrunA17_Chr4g0055551 41.919 198 112 3 144 341 94 288 1.13e-40 145
Msa0041780 MtrunA17_Chr5g0409311 33.690 187 114 2 150 336 83 259 2.78e-28 112
Msa0041780 MtrunA17_Chr7g0251451 32.447 188 117 2 149 336 73 250 2.12e-26 107
Msa0041780 MtrunA17_Chr4g0038261 30.220 182 117 2 155 336 45 216 1.51e-22 95.1
Msa0041780 MtrunA17_Chr4g0056771 31.868 182 114 2 155 336 95 266 1.48e-21 93.6
Msa0041780 MtrunA17_Chr7g0270061 32.402 179 111 2 158 336 111 279 1.78e-20 90.5
Msa0041780 MtrunA17_Chr1g0194601 31.844 179 112 2 158 336 114 282 6.80e-19 86.3
Msa0041780 MtrunA17_Chr4g0034751 28.415 183 119 4 155 336 99 270 1.47e-17 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0041780 AT1G49970.1 64.439 374 121 6 8 373 17 386 2.84e-168 475
Msa0041780 AT1G09130.2 45.833 192 101 2 148 337 114 304 3.11e-55 184
Msa0041780 AT1G09130.1 45.833 192 101 2 148 337 114 304 3.11e-55 184
Msa0041780 AT1G09130.3 45.833 192 101 2 148 337 114 304 9.33e-55 184
Msa0041780 AT4G17040.1 42.857 189 106 2 153 341 103 289 6.26e-50 170
Msa0041780 AT5G45390.1 34.112 214 118 4 150 353 74 274 1.79e-30 118
Msa0041780 AT5G23140.1 30.220 182 117 2 155 336 48 219 9.51e-24 99.0
Msa0041780 AT1G12410.1 31.868 182 114 2 155 336 89 260 1.23e-22 96.7
Msa0041780 AT1G66670.1 30.769 182 116 2 155 336 85 256 1.66e-22 97.1
Msa0041780 AT1G02560.1 32.961 179 110 2 158 336 117 285 2.77e-20 90.5
Msa0041780 AT1G11750.1 27.957 186 124 2 151 336 92 267 4.59e-19 86.7
Msa0041780 AT1G11750.2 28.108 185 123 2 152 336 111 285 1.35e-18 85.5
Msa0041780 ATCG00670.1 22.396 192 140 1 144 335 11 193 7.64e-12 64.3

Find 153 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTTGATCTGTGGACTTTC+GGG 0.154950 1_1:+72259012 None:intergenic
CCTTTAAAGGTTGGTGGTTT+TGG 0.168683 1_1:-72258461 Msa0041780:three_prime_UTR
TTCATCTGCCAAAAGTTATT+TGG 0.171304 1_1:-72260452 Msa0041780:CDS
CCAAAACCACCAACCTTTAA+AGG 0.194849 1_1:+72258461 None:intergenic
TATGTATCCAATGCCTTTAA+AGG 0.204958 1_1:-72258474 Msa0041780:three_prime_UTR
TGGTTTAGTCTTGGTTTAAC+TGG 0.211595 1_1:-72262646 None:intergenic
TCATTATTCTTATTACATAT+TGG 0.223891 1_1:-72258150 Msa0041780:three_prime_UTR
CTGCTTGACCTTTCTATATT+AGG 0.234612 1_1:+72258426 None:intergenic
CCACTTGATCTGTGGACTTT+CGG 0.248148 1_1:+72259011 None:intergenic
CATTATTCTTATTACATATT+GGG 0.255697 1_1:-72258149 Msa0041780:three_prime_UTR
CTTCTTTGCTCTTGGATTCT+CGG 0.258979 1_1:-72260303 Msa0041780:CDS
AACCCTCAAGCGGCTCCTTC+AGG 0.297867 1_1:-72258541 Msa0041780:CDS
TGATGTCTACACTGTGAATT+TGG 0.305379 1_1:-72259704 Msa0041780:CDS
TATTTATATATTAATTCGTC+TGG 0.315416 1_1:-72260059 Msa0041780:CDS
GGATTTGCCTTCTTTGCTCT+TGG 0.316410 1_1:-72260311 Msa0041780:CDS
TGTTGCAGATATGTGGATTA+AGG 0.318648 1_1:-72258985 Msa0041780:intron
CTGTATCTGTACATTGGCTC+TGG 0.323741 1_1:-72258343 Msa0041780:three_prime_UTR
TACAGACTCTAAACATTAAC+TGG 0.341309 1_1:+72258361 None:intergenic
AGCGGCTCCTTCAGGACTTT+AGG 0.348211 1_1:-72258533 Msa0041780:exon
AAACATTTGAAATAAGAATA+AGG 0.361322 1_1:+72258078 None:intergenic
GTGAATTTGGCCATGGCGTT+TGG 0.365449 1_1:-72259691 Msa0041780:CDS
GAGCTGTTGGCAAAAGGAAC+AGG 0.366364 1_1:-72258825 Msa0041780:CDS
ACTATGAGCCAAATAACTTT+TGG 0.372169 1_1:+72260444 None:intergenic
TATAAATAAACAGGTTTGGC+AGG 0.373031 1_1:+72260074 None:intergenic
AAATCCGGTGGAGCATTTCT+AGG 0.377469 1_1:+72260328 None:intergenic
TACAGAGGAGGTAGGGGAAC+AGG 0.379885 1_1:-72260355 Msa0041780:CDS
CTTATTTCAAATGTTTATGC+TGG 0.383546 1_1:-72258071 Msa0041780:three_prime_UTR
GTCAGCGAGTCCGTATTCTA+TGG 0.389727 1_1:+72258740 None:intergenic
ACTGCTTGGGGATGCGGTCG+AGG 0.392918 1_1:+72262423 None:intergenic
GTCCTGAAGGAGCCGCTTGA+GGG 0.407697 1_1:+72258539 None:intergenic
AATATATAAATAAACAGGTT+TGG 0.409111 1_1:+72260070 None:intergenic
GATTCTCGGATATGTTATCT+TGG 0.415479 1_1:-72260289 Msa0041780:CDS
TCTGGCTCAACTTATGTGGT+TGG 0.418871 1_1:-72260108 Msa0041780:CDS
ACATCATACCCTAACCAGTT+TGG 0.419223 1_1:-72262597 Msa0041780:five_prime_UTR
GTCTGAACTGCTTGGGGATG+CGG 0.420074 1_1:+72262417 None:intergenic
ACATTGTAACCAAACTGGTT+AGG 0.423064 1_1:+72262588 None:intergenic
TGAGTATTACATTGAGCTGT+TGG 0.425511 1_1:-72258838 Msa0041780:CDS
TAGAGAAAATGACTAGGCCT+TGG 0.426980 1_1:-72258267 Msa0041780:three_prime_UTR
TATTAATTCGTCTGGGACTC+AGG 0.429397 1_1:-72260051 Msa0041780:intron
CCACCAACCTTTAAAGGCAT+TGG 0.437132 1_1:+72258467 None:intergenic
AATGCACCGCAGTTTCTATA+TGG 0.439793 1_1:-72261149 Msa0041780:CDS
GTGTATAGAATCTTCTAATA+CGG 0.441826 1_1:+72258100 None:intergenic
TCGCGGTTTGCGTGTGGCAG+TGG 0.446692 1_1:+72262475 None:intergenic
AGAGAAAATGACTAGGCCTT+GGG 0.448844 1_1:-72258266 Msa0041780:three_prime_UTR
TACATTGAGCTGTTGGCAAA+AGG 0.452233 1_1:-72258831 Msa0041780:CDS
CATTGTAACCAAACTGGTTA+GGG 0.452557 1_1:+72262589 None:intergenic
TAGTATGTACAGAGGAGGTA+GGG 0.452744 1_1:-72260362 Msa0041780:CDS
AGAGCACTGCGGAGAGGTGG+TGG 0.456289 1_1:-72258565 Msa0041780:CDS
ATTCATCATCACATTGATAA+CGG 0.457880 1_1:+72258214 None:intergenic
TGAATGGTGATATTTCCATT+TGG 0.458893 1_1:+72258384 None:intergenic
AGAAGACATTGTAACCAAAC+TGG 0.459344 1_1:+72262583 None:intergenic
GTGGCAGTGGCGTGAGGAAA+AGG 0.459513 1_1:+72262488 None:intergenic
GAATTAATATATAAATAAAC+AGG 0.462866 1_1:+72260065 None:intergenic
AAGAGCAAAGAAGGCAAATC+CGG 0.464258 1_1:+72260313 None:intergenic
AAAATAATGTATTCAATGGA+TGG 0.467679 1_1:-72258717 Msa0041780:CDS
AAAAGTTATTTGGCTCATAG+TGG 0.470154 1_1:-72260442 Msa0041780:CDS
CGAGAATCCAAGAGCAAAGA+AGG 0.470196 1_1:+72260304 None:intergenic
TTAGTATGTACAGAGGAGGT+AGG 0.470751 1_1:-72260363 Msa0041780:CDS
TGTATCTGTACATTGGCTCT+GGG 0.472404 1_1:-72258342 Msa0041780:three_prime_UTR
TGTATAGAATCTTCTAATAC+GGG 0.472592 1_1:+72258101 None:intergenic
CCAATGCCTTTAAAGGTTGG+TGG 0.476124 1_1:-72258467 Msa0041780:three_prime_UTR
TTATTCTGGCTCAACTTATG+TGG 0.478590 1_1:-72260112 Msa0041780:CDS
TGGTCTTAATCCCTCGCAAA+TGG 0.479774 1_1:-72261129 Msa0041780:CDS
AGCCGTGACAGAACTTATTC+TGG 0.484856 1_1:-72260126 Msa0041780:CDS
GGGTGTAAGAAGATAATAAC+CGG 0.485721 1_1:-72262625 Msa0041780:five_prime_UTR
CGGGGAACAAGGTGTGCATT+AGG 0.486233 1_1:+72258120 None:intergenic
TGACAAAATAATGTATTCAA+TGG 0.491221 1_1:-72258721 Msa0041780:CDS
GCAGAGATCTTCACATATCA+AGG 0.491667 1_1:-72258407 Msa0041780:three_prime_UTR
CTTCACATATCAAGGCCAAA+TGG 0.492075 1_1:-72258399 Msa0041780:three_prime_UTR
CTTTCAGACATCTGATGCAC+AGG 0.493491 1_1:+72261083 None:intergenic
TTATTTCAAATGTTTATGCT+GGG 0.496512 1_1:-72258070 Msa0041780:three_prime_UTR
AAATAATGTATTCAATGGAT+GGG 0.501932 1_1:-72258716 Msa0041780:CDS
TTTCCTGTCTGAACTGCTTG+GGG 0.509693 1_1:+72262411 None:intergenic
AGACAGGAAAATCTCAAAGA+TGG 0.509874 1_1:-72262398 Msa0041780:CDS
GTGGTTCTGTTGCAGATATG+TGG 0.509883 1_1:-72258992 Msa0041780:CDS
GGTTTAGTCTTGGTTTAACT+GGG 0.515695 1_1:-72262645 None:intergenic
GTTGGAAATATCTAGTCCTC+TGG 0.517296 1_1:+72258772 None:intergenic
CTGCTTGGGGATGCGGTCGA+GGG 0.519626 1_1:+72262424 None:intergenic
GCAGCAATGATTCTGTCTGT+TGG 0.520589 1_1:-72259664 Msa0041780:CDS
TCTAAACATTAACTGGTGAA+TGG 0.521354 1_1:+72258368 None:intergenic
TAGAGTCTGTATCTGTACAT+TGG 0.525719 1_1:-72258349 Msa0041780:three_prime_UTR
CCACAGGATGCCATAGAATA+CGG 0.527539 1_1:-72258750 Msa0041780:CDS
AGTCCTGAAGGAGCCGCTTG+AGG 0.528742 1_1:+72258538 None:intergenic
ATTCTATGGCATCCTGTGGT+TGG 0.530734 1_1:+72258754 None:intergenic
TGCTGCTTGGCCAAACGCCA+TGG 0.533193 1_1:+72259681 None:intergenic
TATCCAATGCCTTTAAAGGT+TGG 0.535738 1_1:-72258470 Msa0041780:three_prime_UTR
GGGAAAGTGCATATGAGAAG+CGG 0.538447 1_1:-72258695 Msa0041780:CDS
ATTTATATATTAATTCGTCT+GGG 0.544932 1_1:-72260058 Msa0041780:CDS
ATGCATACAGGCAAAAGAGC+TGG 0.551754 1_1:-72258871 Msa0041780:intron
TATTCTTATTACATATTGGG+TGG 0.552781 1_1:-72258146 Msa0041780:three_prime_UTR
AGTCGACGCCTAATATAGAA+AGG 0.554299 1_1:-72258434 Msa0041780:three_prime_UTR
CATCCCCAAGCAGTTCAGAC+AGG 0.554637 1_1:-72262414 Msa0041780:CDS
GTGATGATGAATGAACTTCA+TGG 0.555343 1_1:-72258203 Msa0041780:three_prime_UTR
GATATGTTATCTTGGTATGC+CGG 0.559052 1_1:-72260281 Msa0041780:intron
AGTATGTACAGAGGAGGTAG+GGG 0.560039 1_1:-72260361 Msa0041780:CDS
TACAGAAATCATATCAGCGA+TGG 0.561888 1_1:+72259889 None:intergenic
CTCTAGTTGAAACAAAGCAC+GGG 0.563265 1_1:+72258285 None:intergenic
GTTGAAGAATCGTGGATGAA+TGG 0.565697 1_1:+72262536 None:intergenic
TATGAACATGTCCATTTGCG+AGG 0.567121 1_1:+72261118 None:intergenic
TCTCTAGTTGAAACAAAGCA+CGG 0.569602 1_1:+72258284 None:intergenic
AAGGAAGAAGCTTAGTTCCA+TGG 0.571228 1_1:+72262507 None:intergenic
GAAGCATCGCGGTTTGCGTG+TGG 0.571479 1_1:+72262469 None:intergenic
AGAATAAGTTCTGTCACGGC+TGG 0.572475 1_1:+72260128 None:intergenic
CAACAGAACCACTTGATCTG+TGG 0.572805 1_1:+72259003 None:intergenic
AATAATGTATTCAATGGATG+GGG 0.574540 1_1:-72258715 Msa0041780:CDS
AAAGTTATTTGGCTCATAGT+GGG 0.574872 1_1:-72260441 Msa0041780:CDS
ATCTTCTAATACGGGGAACA+AGG 0.575091 1_1:+72258109 None:intergenic
GGAAAGTGCATATGAGAAGC+GGG 0.576650 1_1:-72258694 Msa0041780:intron
GAAATTACCTAAAGTCCTGA+AGG 0.577509 1_1:+72258526 None:intergenic
TTGCGTGTGGCAGTGGCGTG+AGG 0.577740 1_1:+72262482 None:intergenic
GAGGGAGCAGTTAAAAGAAA+AGG 0.578090 1_1:+72262442 None:intergenic
ATAAATAAACAGGTTTGGCA+GGG 0.579322 1_1:+72260075 None:intergenic
AGCATCAGTTTCTGATCCCA+CGG 0.581104 1_1:+72259916 None:intergenic
TATCTGTACATTGGCTCTGG+GGG 0.582079 1_1:-72258340 Msa0041780:three_prime_UTR
CAGACAGAATCATTGCTGCT+TGG 0.583497 1_1:+72259668 None:intergenic
CAAAGAGCACTGCGGAGAGG+TGG 0.584526 1_1:-72258568 Msa0041780:CDS
TAATAAGAATAATGAAACAA+AGG 0.585811 1_1:+72258158 None:intergenic
GTATCTGTACATTGGCTCTG+GGG 0.587270 1_1:-72258341 Msa0041780:three_prime_UTR
CCGAAAGTCCACAGATCAAG+TGG 0.588356 1_1:-72259011 Msa0041780:CDS
ATGAACATGTCCATTTGCGA+GGG 0.596674 1_1:+72261119 None:intergenic
TTAGGGTATGATGTGTTCAC+CGG 0.596978 1_1:+72262606 None:intergenic
GATTCTTCAACTACTCGCCA+TGG 0.599171 1_1:-72262524 Msa0041780:CDS
GGCGAGTAGTTGAAGAATCG+TGG 0.602735 1_1:+72262528 None:intergenic
GATGAGTAGTGTATCTAGCA+TGG 0.604215 1_1:-72260419 Msa0041780:CDS
GACTAGATATTTCCAACCAC+AGG 0.605387 1_1:-72258766 Msa0041780:CDS
AGCCAGAATAAGTTCTGTCA+CGG 0.605778 1_1:+72260124 None:intergenic
GAGCACTGCGGAGAGGTGGT+GGG 0.606710 1_1:-72258564 Msa0041780:CDS
AAGGCCTAGAAATGCTCCAC+CGG 0.607493 1_1:-72260332 Msa0041780:CDS
GAGGAGGTAGGGGAACAGGA+AGG 0.626447 1_1:-72260351 Msa0041780:CDS
GAGAAAATGACTAGGCCTTG+GGG 0.626649 1_1:-72258265 Msa0041780:three_prime_UTR
AGCAAAGAAGGCAAATCCGG+TGG 0.627505 1_1:+72260316 None:intergenic
CTACACTGTGAATTTGGCCA+TGG 0.627831 1_1:-72259698 Msa0041780:CDS
AAAAGGAACAGGGAAGTCAA+AGG 0.631649 1_1:-72258814 Msa0041780:CDS
AGGTGGTGGGAACCCTCAAG+CGG 0.634420 1_1:-72258551 Msa0041780:CDS
GAATGAGAAGAATGAGACCG+TGG 0.634632 1_1:-72259933 Msa0041780:CDS
AGCTGTTGGCAAAAGGAACA+GGG 0.636658 1_1:-72258824 Msa0041780:CDS
CCGTATTCTATGGCATCCTG+TGG 0.639047 1_1:+72258750 None:intergenic
AGTGTTAGTATGTACAGAGG+AGG 0.639107 1_1:-72260367 Msa0041780:CDS
ACTTCAGAAAATAATCCCCA+AGG 0.654329 1_1:+72258250 None:intergenic
AATGAGAAGAATGAGACCGT+GGG 0.661371 1_1:-72259932 Msa0041780:CDS
CATACAGGCAAAAGAGCTGG+AGG 0.663306 1_1:-72258868 Msa0041780:intron
GATGTCTGAAAGAGTTACAG+AGG 0.663589 1_1:-72261072 Msa0041780:intron
ATGAGTGTTAGTATGTACAG+AGG 0.665010 1_1:-72260370 Msa0041780:CDS
GGATACTTACTGGATGAATG+TGG 0.665949 1_1:+72259616 None:intergenic
GCTCAAAGAGCACTGCGGAG+AGG 0.670869 1_1:-72258571 Msa0041780:CDS
ATGAATGTGGCAGTACAGCA+CGG 0.671866 1_1:+72259629 None:intergenic
AAATTGCTAAAGACGTCCAG+AGG 0.678617 1_1:-72258788 Msa0041780:CDS
GAAAAGGACTTGAAGCATCG+CGG 0.687598 1_1:+72262458 None:intergenic
TTCAACTAGAGAAAATGACT+AGG 0.702147 1_1:-72258273 Msa0041780:three_prime_UTR
ATGAATGGTGAAGAGAGTGA+TGG 0.712432 1_1:+72262551 None:intergenic
TTAAGACCATATAGAAACTG+CGG 0.725517 1_1:+72261143 None:intergenic
GTATAGAATCTTCTAATACG+GGG 0.735971 1_1:+72258102 None:intergenic
TACGTGCTCAAAGAGCACTG+CGG 0.848626 1_1:-72258576 Msa0041780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATTAGAATTAGAAAAAA+TGG + chr1_1:72258403-72258422 None:intergenic 10.0%
!! TTTGAATATATTTATCATTT+GGG + chr1_1:72259433-72259452 None:intergenic 10.0%
!! GAATTAATATATAAATAAAC+AGG + chr1_1:72260644-72260663 None:intergenic 10.0%
!!! TTCTATTTATTGATTATATT+CGG - chr1_1:72261809-72261828 Msa0041780:intron 10.0%
!! TAATTCTAATTTACTCTATT+GGG - chr1_1:72258410-72258429 Msa0041780:three_prime_UTR 15.0%
!! TAAGTTTCAAAAGTAAAAAT+TGG - chr1_1:72258678-72258697 Msa0041780:intron 15.0%
!! TTAATTTAGATGAGAAAATT+AGG - chr1_1:72259389-72259408 Msa0041780:intron 15.0%
!! GTTTGAATATATTTATCATT+TGG + chr1_1:72259434-72259453 None:intergenic 15.0%
!!! TTGAAACTTTTAAAACATAA+AGG + chr1_1:72260020-72260039 None:intergenic 15.0%
!!! TTGAAACTTTTAAAACATAA+GGG + chr1_1:72260020-72260039 None:intergenic 15.0%
!!! TTGAAACTTTTAAAACATAA+GGG - chr1_1:72260020-72260039 Msa0041780:intron 15.0%
!! AAAATATTGAAAGGATATAA+AGG + chr1_1:72260095-72260114 None:intergenic 15.0%
!! CAAAATATATTTACATACAT+AGG + chr1_1:72260516-72260535 None:intergenic 15.0%
!! AATATATAAATAAACAGGTT+TGG + chr1_1:72260639-72260658 None:intergenic 15.0%
!! TATTTATATATTAATTCGTC+TGG - chr1_1:72260647-72260666 Msa0041780:intron 15.0%
!! ATTTATATATTAATTCGTCT+GGG - chr1_1:72260648-72260667 Msa0041780:intron 15.0%
!! TATGTGGTTATTTATATAAA+TGG - chr1_1:72260724-72260743 Msa0041780:intron 15.0%
!! AAAAAAATATTAGAAAGAGT+AGG + chr1_1:72260954-72260973 None:intergenic 15.0%
!!! ATATGATTCATGAATATTTT+TGG - chr1_1:72261398-72261417 Msa0041780:intron 15.0%
!!! TCTATTTATTGATTATATTC+GGG - chr1_1:72261810-72261829 Msa0041780:intron 15.0%
!! TATAATGCATGAAATAATTA+TGG + chr1_1:72262070-72262089 None:intergenic 15.0%
!! TAATAAGAATAATGAAACAA+AGG + chr1_1:72262551-72262570 None:intergenic 15.0%
!! TCATTATTCTTATTACATAT+TGG - chr1_1:72262556-72262575 Msa0041780:CDS 15.0%
!! CATTATTCTTATTACATATT+GGG - chr1_1:72262557-72262576 Msa0041780:CDS 15.0%
!!! AAACATTTGAAATAAGAATA+AGG + chr1_1:72262631-72262650 None:intergenic 15.0%
!! CTAATTCTAATTTACTCTAT+TGG - chr1_1:72258409-72258428 Msa0041780:three_prime_UTR 20.0%
!!! AAAAAAAGCAACTTTTAATC+CGG - chr1_1:72258477-72258496 Msa0041780:three_prime_UTR 20.0%
!!! TGGAATTGATTTTTTGTTTA+TGG - chr1_1:72258617-72258636 Msa0041780:intron 20.0%
!! AACATCAACATAAACTAAAT+AGG + chr1_1:72259067-72259086 None:intergenic 20.0%
!! TTTACGAAACTAAAAACTAA+AGG + chr1_1:72259122-72259141 None:intergenic 20.0%
!! AAAGTTTACTTAAGAAGAAT+TGG - chr1_1:72259312-72259331 Msa0041780:intron 20.0%
!! AAGTTTACTTAAGAAGAATT+GGG - chr1_1:72259313-72259332 Msa0041780:intron 20.0%
!!! AATTGAATAGTTTGAAACTT+GGG - chr1_1:72259472-72259491 Msa0041780:intron 20.0%
!! AAGATAAAATGTCAAGATTA+GGG + chr1_1:72259505-72259524 None:intergenic 20.0%
!! TAAGATAAAATGTCAAGATT+AGG + chr1_1:72259506-72259525 None:intergenic 20.0%
!! GAAACCTAAAATAAACATAA+GGG + chr1_1:72260051-72260070 None:intergenic 20.0%
!! TGAAACCTAAAATAAACATA+AGG + chr1_1:72260050-72260069 None:intergenic 20.0%
!!! ATGTTTTAAAAGTTTCAAGT+TGG - chr1_1:72259731-72259750 Msa0041780:intron 20.0%
!!! CTTGAAACTTTTAAAACATA+AGG + chr1_1:72260019-72260038 None:intergenic 20.0%
!!! ATGTTTTAAAAGTTTCAAGT+TGG - chr1_1:72259731-72259750 Msa0041780:intron 20.0%
!!! TTGAAAACTTTAAAACGTAA+GGG - chr1_1:72259991-72260010 Msa0041780:intron 20.0%
!!! ATGTTTTAAAAGTTTCAAGT+TGG + chr1_1:72259731-72259750 None:intergenic 20.0%
!!! CTTGAAACTTTTAAAACATA+AGG - chr1_1:72260019-72260038 Msa0041780:intron 20.0%
!! TGAAACCTAAAATAAACATA+AGG - chr1_1:72260050-72260069 Msa0041780:intron 20.0%
!! GAAACCTAAAATAAACATAA+GGG - chr1_1:72260051-72260070 Msa0041780:intron 20.0%
!! TGACTTAACAAAATATTGAA+AGG + chr1_1:72260104-72260123 None:intergenic 20.0%
!!! ATTTGTCTAATTATTGATTG+TGG - chr1_1:72260140-72260159 Msa0041780:intron 20.0%
!! AGATAAAAACAAAACATATC+AGG + chr1_1:72260458-72260477 None:intergenic 20.0%
!!! TTTTGTTTTTATCTCAATCT+TGG - chr1_1:72260464-72260483 Msa0041780:intron 20.0%
!!! AATTATTTATCGTGTCTTTT+TGG - chr1_1:72261340-72261359 Msa0041780:intron 20.0%
!! TCATATTTATAAAACCTAGA+AGG + chr1_1:72261384-72261403 None:intergenic 20.0%
!! TGACAAAATAATGTATTCAA+TGG - chr1_1:72261985-72262004 Msa0041780:intron 20.0%
!! AAAATAATGTATTCAATGGA+TGG - chr1_1:72261989-72262008 Msa0041780:intron 20.0%
!! AAATAATGTATTCAATGGAT+GGG - chr1_1:72261990-72262009 Msa0041780:intron 20.0%
!! AAAAAAGCAACTTTTAATCC+GGG - chr1_1:72258478-72258497 Msa0041780:three_prime_UTR 25.0%
! CAATTCCACAATAAAATTGA+TGG + chr1_1:72258605-72258624 None:intergenic 25.0%
! ACTTAACAGATGTAAACTAT+AGG + chr1_1:72258663-72258682 None:intergenic 25.0%
! AACTAAATAGGAAACAAAGA+CGG + chr1_1:72259055-72259074 None:intergenic 25.0%
!!! ATGTTATTTTGTTGTAGCTT+TGG - chr1_1:72259096-72259115 Msa0041780:intron 25.0%
! TTTGCTTGTAAACACAATAT+AGG - chr1_1:72259204-72259223 Msa0041780:intron 25.0%
! TTGCTTGTAAACACAATATA+GGG - chr1_1:72259205-72259224 Msa0041780:intron 25.0%
! TGGGTAAATGTTATTATGTA+AGG - chr1_1:72259345-72259364 Msa0041780:intron 25.0%
! TATTATGTAAGGCTTGAAAT+TGG - chr1_1:72259356-72259375 Msa0041780:intron 25.0%
! TTTAGATGAGAAAATTAGGA+AGG - chr1_1:72259393-72259412 Msa0041780:intron 25.0%
!! CAATTGAATAGTTTGAAACT+TGG - chr1_1:72259471-72259490 Msa0041780:intron 25.0%
!!! GTTTATTTTAGGTTTCAAGT+TGG - chr1_1:72259702-72259721 Msa0041780:CDS 25.0%
! ACTAGACCTTATAAAGATTT+GGG - chr1_1:72259826-72259845 Msa0041780:intron 25.0%
! TGTTAACCCAAATCTTTATA+AGG + chr1_1:72259835-72259854 None:intergenic 25.0%
! TTAAACTCAATATCATGTCA+CGG - chr1_1:72259925-72259944 Msa0041780:CDS 25.0%
!!! GTTTTCAAGTTAATCCAAAA+CGG + chr1_1:72259979-72259998 None:intergenic 25.0%
!!! CTTGAAAACTTTAAAACGTA+AGG - chr1_1:72259990-72260009 Msa0041780:intron 25.0%
!!! GTTTATTTTAGGTTTCAAGT+TGG + chr1_1:72259702-72259721 None:intergenic 25.0%
!!! TGATCCCTTATGTTTATTTT+AGG + chr1_1:72260058-72260077 None:intergenic 25.0%
! GTAAAAAGATGAAATCATCA+AGG + chr1_1:72260491-72260510 None:intergenic 25.0%
! AATCTGTACGAATCATAAAA+GGG + chr1_1:72260555-72260574 None:intergenic 25.0%
! TCCTTGTAATGTATAATATG+TGG - chr1_1:72260708-72260727 Msa0041780:intron 25.0%
! ACCACATATTATACATTACA+AGG + chr1_1:72260712-72260731 None:intergenic 25.0%
!! TGATATACTATAGGTTGAAA+GGG + chr1_1:72260978-72260997 None:intergenic 25.0%
!! TTGATATACTATAGGTTGAA+AGG + chr1_1:72260979-72260998 None:intergenic 25.0%
! CATCAGATTTGATATACTAT+AGG + chr1_1:72260987-72261006 None:intergenic 25.0%
!!! TCATGAATATTTTTGGAGAA+AGG - chr1_1:72261405-72261424 Msa0041780:intron 25.0%
! AAACAAAAAACTGACCAAAA+CGG + chr1_1:72261526-72261545 None:intergenic 25.0%
! AATAATGTATTCAATGGATG+GGG - chr1_1:72261991-72262010 Msa0041780:intron 25.0%
! ATTCATCATCACATTGATAA+CGG + chr1_1:72262495-72262514 None:intergenic 25.0%
! TATTCTTATTACATATTGGG+TGG - chr1_1:72262560-72262579 Msa0041780:CDS 25.0%
! TGTATAGAATCTTCTAATAC+GGG + chr1_1:72262608-72262627 None:intergenic 25.0%
! GTGTATAGAATCTTCTAATA+CGG + chr1_1:72262609-72262628 None:intergenic 25.0%
! CTTATTTCAAATGTTTATGC+TGG - chr1_1:72262635-72262654 Msa0041780:five_prime_UTR 25.0%
TTCCACAATAAAATTGATGG+AGG + chr1_1:72258602-72258621 None:intergenic 30.0%
!!! AAATCTGCTACTGGTTTTAA+GGG + chr1_1:72258713-72258732 None:intergenic 30.0%
!!! AAAATCTGCTACTGGTTTTA+AGG + chr1_1:72258714-72258733 None:intergenic 30.0%
ACTAAATAGGAAACAAAGAC+GGG + chr1_1:72259054-72259073 None:intergenic 30.0%
TACTTAAGAAGAATTGGGAA+TGG - chr1_1:72259318-72259337 Msa0041780:intron 30.0%
ACTTAAGAAGAATTGGGAAT+GGG - chr1_1:72259319-72259338 Msa0041780:intron 30.0%
TTAAGACCATATAGAAACTG+CGG + chr1_1:72259566-72259585 None:intergenic 30.0%
AGGTTCTCATCATTTATATC+CGG - chr1_1:72259654-72259673 Msa0041780:CDS 30.0%
!! TGGTCCCTTATGTTTATTTT+AGG - chr1_1:72259691-72259710 Msa0041780:CDS 30.0%
ATCTTTATAAGGTCTAGTGA+CGG + chr1_1:72259824-72259843 None:intergenic 30.0%
CACTAGACCTTATAAAGATT+TGG - chr1_1:72259825-72259844 Msa0041780:intron 30.0%
! AAAGATTTGGGTTAACAATG+CGG - chr1_1:72259838-72259857 Msa0041780:intron 30.0%
AATACGCGGTGATAAAATTT+GGG + chr1_1:72260184-72260203 None:intergenic 30.0%
AAATACGCGGTGATAAAATT+TGG + chr1_1:72260185-72260204 None:intergenic 30.0%
TATAGTGTTAGTGATTTGAC+AGG - chr1_1:72260224-72260243 Msa0041780:intron 30.0%
TTCATCTGCCAAAAGTTATT+TGG - chr1_1:72260254-72260273 Msa0041780:intron 30.0%
! ACTATGAGCCAAATAACTTT+TGG + chr1_1:72260265-72260284 None:intergenic 30.0%
! AAAAGTTATTTGGCTCATAG+TGG - chr1_1:72260264-72260283 Msa0041780:intron 30.0%
! AAAGTTATTTGGCTCATAGT+GGG - chr1_1:72260265-72260284 Msa0041780:intron 30.0%
AAACATATCAGGATACTTAC+CGG + chr1_1:72260447-72260466 None:intergenic 30.0%
CAATCTGTACGAATCATAAA+AGG + chr1_1:72260556-72260575 None:intergenic 30.0%
ATAAATAAACAGGTTTGGCA+GGG + chr1_1:72260634-72260653 None:intergenic 30.0%
TATAAATAAACAGGTTTGGC+AGG + chr1_1:72260635-72260654 None:intergenic 30.0%
TCATTCTTCTCATTCTAATC+CGG + chr1_1:72260768-72260787 None:intergenic 30.0%
! TTAGAAAGAGTAGGTTGAAA+GGG + chr1_1:72260945-72260964 None:intergenic 30.0%
! ATTAGAAAGAGTAGGTTGAA+AGG + chr1_1:72260946-72260965 None:intergenic 30.0%
! GATATACTATAGGTTGAAAG+GGG + chr1_1:72260977-72260996 None:intergenic 30.0%
ATTCTGTCTGTTGGAAAAAA+GGG - chr1_1:72261051-72261070 Msa0041780:intron 30.0%
TTTCAAAAGTTTACCCAGAT+AGG + chr1_1:72261114-72261133 None:intergenic 30.0%
TCTGAATACTGAATGATTTG+TGG - chr1_1:72261157-72261176 Msa0041780:CDS 30.0%
TTGTACAATAGCTATGTACA+AGG - chr1_1:72261205-72261224 Msa0041780:intron 30.0%
AGACTAATCCCTAAACATTT+GGG + chr1_1:72261245-72261264 None:intergenic 30.0%
AAGACTAATCCCTAAACATT+TGG + chr1_1:72261246-72261265 None:intergenic 30.0%
!! ATTAGTCTTAGAATCAGCTA+AGG - chr1_1:72261257-72261276 Msa0041780:intron 30.0%
TAAAACCTAGAAGGAATCAT+TGG + chr1_1:72261375-72261394 None:intergenic 30.0%
TGCATTGAGTGTTAATGTAT+AGG - chr1_1:72261445-72261464 Msa0041780:intron 30.0%
! TTTTATCTTTACATCGTCAG+TGG - chr1_1:72261590-72261609 Msa0041780:intron 30.0%
TATGTATCCAATGCCTTTAA+AGG - chr1_1:72262232-72262251 Msa0041780:intron 30.0%
TGAATGGTGATATTTCCATT+TGG + chr1_1:72262325-72262344 None:intergenic 30.0%
TCTAAACATTAACTGGTGAA+TGG + chr1_1:72262341-72262360 None:intergenic 30.0%
TACAGACTCTAAACATTAAC+TGG + chr1_1:72262348-72262367 None:intergenic 30.0%
TTCAACTAGAGAAAATGACT+AGG - chr1_1:72262433-72262452 Msa0041780:CDS 30.0%
GTATAGAATCTTCTAATACG+GGG + chr1_1:72262607-72262626 None:intergenic 30.0%
GGGTGTAAGAAGATAATAAC+CGG - chr1_1:72258081-72258100 Msa0041780:three_prime_UTR 35.0%
CATTGTAACCAAACTGGTTA+GGG + chr1_1:72258120-72258139 None:intergenic 35.0%
ACATTGTAACCAAACTGGTT+AGG + chr1_1:72258121-72258140 None:intergenic 35.0%
AGAAGACATTGTAACCAAAC+TGG + chr1_1:72258126-72258145 None:intergenic 35.0%
AGACAGGAAAATCTCAAAGA+TGG - chr1_1:72258308-72258327 Msa0041780:three_prime_UTR 35.0%
! ATCCGGGTCTGAATTATTTT+AGG - chr1_1:72258494-72258513 Msa0041780:three_prime_UTR 35.0%
!! TCCGGGTCTGAATTATTTTA+GGG - chr1_1:72258495-72258514 Msa0041780:three_prime_UTR 35.0%
TCCCTAAAATAATTCAGACC+CGG + chr1_1:72258499-72258518 None:intergenic 35.0%
! TGCCTCCATCAATTTTATTG+TGG - chr1_1:72258597-72258616 Msa0041780:intron 35.0%
!!! AATCTGCTACTGGTTTTAAG+GGG + chr1_1:72258712-72258731 None:intergenic 35.0%
AATTCAGCAAAATCTGCTAC+TGG + chr1_1:72258722-72258741 None:intergenic 35.0%
ATAAGATTATCGTCTCCTTG+TGG - chr1_1:72258748-72258767 Msa0041780:CDS 35.0%
ATAAGATTAACTCCTCCTCT+GGG - chr1_1:72258789-72258808 Msa0041780:CDS 35.0%
TATCAGCATAAGTTGCAGAA+AGG - chr1_1:72259158-72259177 Msa0041780:intron 35.0%
ATCAGCATAAGTTGCAGAAA+GGG - chr1_1:72259159-72259178 Msa0041780:intron 35.0%
AAGAATTGGGAATGGGAATT+GGG - chr1_1:72259326-72259345 Msa0041780:intron 35.0%
TGAGAAAATTAGGAAGGTAG+AGG - chr1_1:72259399-72259418 Msa0041780:intron 35.0%
AAAATGTCAAGATTAGGGCT+AGG + chr1_1:72259500-72259519 None:intergenic 35.0%
! AAGATTTGGGTTAACAATGC+GGG - chr1_1:72259839-72259858 Msa0041780:intron 35.0%
CTTCTGAACAGTTAAATACG+CGG + chr1_1:72260198-72260217 None:intergenic 35.0%
ATGAGTGTTAGTATGTACAG+AGG - chr1_1:72260336-72260355 Msa0041780:CDS 35.0%
GATTCTCGGATATGTTATCT+TGG - chr1_1:72260417-72260436 Msa0041780:CDS 35.0%
GATATGTTATCTTGGTATGC+CGG - chr1_1:72260425-72260444 Msa0041780:CDS 35.0%
!! TTATTCTGGCTCAACTTATG+TGG - chr1_1:72260594-72260613 Msa0041780:intron 35.0%
TACAGAAATCATATCAGCGA+TGG + chr1_1:72260820-72260839 None:intergenic 35.0%
AAAACACAACATTGCGATGT+GGG + chr1_1:72260871-72260890 None:intergenic 35.0%
! TAGAAAGAGTAGGTTGAAAG+GGG + chr1_1:72260944-72260963 None:intergenic 35.0%
TGATGTCTACACTGTGAATT+TGG - chr1_1:72261002-72261021 Msa0041780:intron 35.0%
GATTCTGTCTGTTGGAAAAA+AGG - chr1_1:72261050-72261069 Msa0041780:intron 35.0%
ATCCAGTAAGTATCCTATCT+GGG - chr1_1:72261098-72261117 Msa0041780:CDS 35.0%
GAATCAAGCCCAAATGTTTA+GGG - chr1_1:72261234-72261253 Msa0041780:intron 35.0%
CAACACTGAAATGAACACTT+TGG + chr1_1:72261473-72261492 None:intergenic 35.0%
TTCAGTGTTGCGTTTGAATT+AGG - chr1_1:72261483-72261502 Msa0041780:intron 35.0%
TCAGTGTTGCGTTTGAATTA+GGG - chr1_1:72261484-72261503 Msa0041780:intron 35.0%
TTGCGTTTGAATTAGGGAAT+AGG - chr1_1:72261490-72261509 Msa0041780:intron 35.0%
TGCGTTTGAATTAGGGAATA+GGG - chr1_1:72261491-72261510 Msa0041780:intron 35.0%
! TAGGGATATTTCTTCCGTTT+TGG - chr1_1:72261509-72261528 Msa0041780:intron 35.0%
!!! GTCATCGTTTTTTCTTACTG+CGG - chr1_1:72261635-72261654 Msa0041780:intron 35.0%
!!! TCATCGTTTTTTCTTACTGC+GGG - chr1_1:72261636-72261655 Msa0041780:intron 35.0%
! TGTTGCAGATATGTGGATTA+AGG - chr1_1:72261721-72261740 Msa0041780:intron 35.0%
TATATTCGGGAAATGCATAC+AGG - chr1_1:72261823-72261842 Msa0041780:intron 35.0%
TGAGTATTACATTGAGCTGT+TGG - chr1_1:72261868-72261887 Msa0041780:intron 35.0%
GAAATTACCTAAAGTCCTGA+AGG + chr1_1:72262183-72262202 None:intergenic 35.0%
! TATCCAATGCCTTTAAAGGT+TGG - chr1_1:72262236-72262255 Msa0041780:intron 35.0%
CTGCTTGACCTTTCTATATT+AGG + chr1_1:72262283-72262302 None:intergenic 35.0%
TAGAGTCTGTATCTGTACAT+TGG - chr1_1:72262357-72262376 Msa0041780:intron 35.0%
TCTCTAGTTGAAACAAAGCA+CGG + chr1_1:72262425-72262444 None:intergenic 35.0%
ACTTCAGAAAATAATCCCCA+AGG + chr1_1:72262459-72262478 None:intergenic 35.0%
! GTGATGATGAATGAACTTCA+TGG - chr1_1:72262503-72262522 Msa0041780:CDS 35.0%
TTAGGGTATGATGTGTTCAC+CGG + chr1_1:72258103-72258122 None:intergenic 40.0%
ACATCATACCCTAACCAGTT+TGG - chr1_1:72258109-72258128 Msa0041780:three_prime_UTR 40.0%
ATGAATGGTGAAGAGAGTGA+TGG + chr1_1:72258158-72258177 None:intergenic 40.0%
GTTGAAGAATCGTGGATGAA+TGG + chr1_1:72258173-72258192 None:intergenic 40.0%
AAGGAAGAAGCTTAGTTCCA+TGG + chr1_1:72258202-72258221 None:intergenic 40.0%
GAGGGAGCAGTTAAAAGAAA+AGG + chr1_1:72258267-72258286 None:intergenic 40.0%
! TTTTCCTGTCTGAACTGCTT+GGG + chr1_1:72258299-72258318 None:intergenic 40.0%
! ATTTTCCTGTCTGAACTGCT+TGG + chr1_1:72258300-72258319 None:intergenic 40.0%
!! CTGTACTACTGATTTCCACA+AGG + chr1_1:72258766-72258785 None:intergenic 40.0%
GATAAGATTAACTCCTCCTC+TGG - chr1_1:72258788-72258807 Msa0041780:CDS 40.0%
ATCCTTGTACCTTAGATGAG+TGG - chr1_1:72258813-72258832 Msa0041780:CDS 40.0%
AGTGATGTATGTCGTATGAG+AGG - chr1_1:72258867-72258886 Msa0041780:intron 40.0%
GTGATGTATGTCGTATGAGA+GGG - chr1_1:72258868-72258887 Msa0041780:intron 40.0%
GGCAGAGTTATGTGAAGTTT+AGG - chr1_1:72259226-72259245 Msa0041780:intron 40.0%
TAAGATGTTCAACGCGAACA+AGG - chr1_1:72259276-72259295 Msa0041780:intron 40.0%
AAGATGTTCAACGCGAACAA+GGG - chr1_1:72259277-72259296 Msa0041780:intron 40.0%
GAAGAATTGGGAATGGGAAT+TGG - chr1_1:72259325-72259344 Msa0041780:intron 40.0%
AATGCACCGCAGTTTCTATA+TGG - chr1_1:72259557-72259576 Msa0041780:intron 40.0%
ATGAACATGTCCATTTGCGA+GGG + chr1_1:72259590-72259609 None:intergenic 40.0%
TATGAACATGTCCATTTGCG+AGG + chr1_1:72259591-72259610 None:intergenic 40.0%
GATGTCTGAAAGAGTTACAG+AGG - chr1_1:72259634-72259653 Msa0041780:CDS 40.0%
ATCCGGCTTAATTGCATGTT+TGG - chr1_1:72259671-72259690 Msa0041780:CDS 40.0%
GACCAAACATGCAATTAAGC+CGG + chr1_1:72259676-72259695 None:intergenic 40.0%
! TATAAGGTCTAGTGACGGAA+GGG + chr1_1:72259819-72259838 None:intergenic 40.0%
! TTATAAGGTCTAGTGACGGA+AGG + chr1_1:72259820-72259839 None:intergenic 40.0%
ACTCAATATCATGTCACGGA+AGG - chr1_1:72259929-72259948 Msa0041780:CDS 40.0%
CTCAATATCATGTCACGGAA+GGG - chr1_1:72259930-72259949 Msa0041780:CDS 40.0%
! TTCCAACGTGAATACCGTTT+TGG - chr1_1:72259962-72259981 Msa0041780:intron 40.0%
ATCCAAAACGGTATTCACGT+TGG + chr1_1:72259967-72259986 None:intergenic 40.0%
GATGAGTAGTGTATCTAGCA+TGG - chr1_1:72260287-72260306 Msa0041780:CDS 40.0%
AGTGTTAGTATGTACAGAGG+AGG - chr1_1:72260339-72260358 Msa0041780:CDS 40.0%
TTAGTATGTACAGAGGAGGT+AGG - chr1_1:72260343-72260362 Msa0041780:CDS 40.0%
TAGTATGTACAGAGGAGGTA+GGG - chr1_1:72260344-72260363 Msa0041780:CDS 40.0%
AAGAGCAAAGAAGGCAAATC+CGG + chr1_1:72260396-72260415 None:intergenic 40.0%
CTTCTTTGCTCTTGGATTCT+CGG - chr1_1:72260403-72260422 Msa0041780:CDS 40.0%
AGCCAGAATAAGTTCTGTCA+CGG + chr1_1:72260585-72260604 None:intergenic 40.0%
! TATTAATTCGTCTGGGACTC+AGG - chr1_1:72260655-72260674 Msa0041780:intron 40.0%
GTCTTTCTTTCCTCTGTTTC+CGG - chr1_1:72260746-72260765 Msa0041780:intron 40.0%
TCATTCTAATCCGGAAACAG+AGG + chr1_1:72260759-72260778 None:intergenic 40.0%
AATGAGAAGAATGAGACCGT+GGG - chr1_1:72260774-72260793 Msa0041780:intron 40.0%
CAAAACACAACATTGCGATG+TGG + chr1_1:72260872-72260891 None:intergenic 40.0%
! CACATCGCAATGTTGTGTTT+TGG - chr1_1:72260870-72260889 Msa0041780:intron 40.0%
! AGAAAGAGTAGGTTGAAAGG+GGG + chr1_1:72260943-72260962 None:intergenic 40.0%
GGATACTTACTGGATGAATG+TGG + chr1_1:72261093-72261112 None:intergenic 40.0%
CATCCAGTAAGTATCCTATC+TGG - chr1_1:72261097-72261116 Msa0041780:CDS 40.0%
TACCCAGATAGGATACTTAC+TGG + chr1_1:72261103-72261122 None:intergenic 40.0%
ATAGCTATGTACAAGGCTGA+AGG - chr1_1:72261212-72261231 Msa0041780:intron 40.0%
GGAATCAAGCCCAAATGTTT+AGG - chr1_1:72261233-72261252 Msa0041780:intron 40.0%
ACCATCCAATGATTCCTTCT+AGG - chr1_1:72261367-72261386 Msa0041780:intron 40.0%
ACCTAGAAGGAATCATTGGA+TGG + chr1_1:72261371-72261390 None:intergenic 40.0%
TACATCGTCAGTGGAATGTA+AGG - chr1_1:72261599-72261618 Msa0041780:intron 40.0%
GAAGACAGCAAACATGTACA+CGG + chr1_1:72261755-72261774 None:intergenic 40.0%
TACATTGAGCTGTTGGCAAA+AGG - chr1_1:72261875-72261894 Msa0041780:intron 40.0%
AAAAGGAACAGGGAAGTCAA+AGG - chr1_1:72261892-72261911 Msa0041780:intron 40.0%
AAATTGCTAAAGACGTCCAG+AGG - chr1_1:72261918-72261937 Msa0041780:intron 40.0%
GTTGGAAATATCTAGTCCTC+TGG + chr1_1:72261937-72261956 None:intergenic 40.0%
GACTAGATATTTCCAACCAC+AGG - chr1_1:72261940-72261959 Msa0041780:intron 40.0%
CCAAAACCACCAACCTTTAA+AGG + chr1_1:72262248-72262267 None:intergenic 40.0%
!!! CCTTTAAAGGTTGGTGGTTT+TGG - chr1_1:72262245-72262264 Msa0041780:intron 40.0%
AGTCGACGCCTAATATAGAA+AGG - chr1_1:72262272-72262291 Msa0041780:intron 40.0%
GCAGAGATCTTCACATATCA+AGG - chr1_1:72262299-72262318 Msa0041780:intron 40.0%
CTTCACATATCAAGGCCAAA+TGG - chr1_1:72262307-72262326 Msa0041780:intron 40.0%
!! TGTATCTGTACATTGGCTCT+GGG - chr1_1:72262364-72262383 Msa0041780:intron 40.0%
CTCTAGTTGAAACAAAGCAC+GGG + chr1_1:72262424-72262443 None:intergenic 40.0%
TAGAGAAAATGACTAGGCCT+TGG - chr1_1:72262439-72262458 Msa0041780:CDS 40.0%
AGAGAAAATGACTAGGCCTT+GGG - chr1_1:72262440-72262459 Msa0041780:CDS 40.0%
ATCTTCTAATACGGGGAACA+AGG + chr1_1:72262600-72262619 None:intergenic 40.0%
GATTCTTCAACTACTCGCCA+TGG - chr1_1:72258182-72258201 Msa0041780:three_prime_UTR 45.0%
!! GAAAAGGACTTGAAGCATCG+CGG + chr1_1:72258251-72258270 None:intergenic 45.0%
TTTCCTGTCTGAACTGCTTG+GGG + chr1_1:72258298-72258317 None:intergenic 45.0%
CTTGTACCTTAGATGAGTGG+CGG - chr1_1:72258816-72258835 Msa0041780:CDS 45.0%
TTGTACCTTAGATGAGTGGC+GGG - chr1_1:72258817-72258836 Msa0041780:CDS 45.0%
TGTGTGTGTGTGTATGTGTG+TGG - chr1_1:72258950-72258969 Msa0041780:intron 45.0%
TGTGTGTGTATGTGTGTGGT+GGG - chr1_1:72258954-72258973 Msa0041780:intron 45.0%
! ACAACCAAAGCACTCACAAG+GGG + chr1_1:72259004-72259023 None:intergenic 45.0%
! GACAACCAAAGCACTCACAA+GGG + chr1_1:72259005-72259024 None:intergenic 45.0%
CTTGTGAGTGCTTTGGTTGT+CGG - chr1_1:72259004-72259023 Msa0041780:CDS 45.0%
! TTGGTTGTCGGTGCAGTTTT+TGG - chr1_1:72259016-72259035 Msa0041780:CDS 45.0%
!!! GCAGTTTTTGGAACTTCGCT+TGG - chr1_1:72259028-72259047 Msa0041780:CDS 45.0%
AGATGTTCAACGCGAACAAG+GGG - chr1_1:72259278-72259297 Msa0041780:intron 45.0%
! TGGTCTTAATCCCTCGCAAA+TGG - chr1_1:72259577-72259596 Msa0041780:intron 45.0%
CTTTCAGACATCTGATGCAC+AGG + chr1_1:72259626-72259645 None:intergenic 45.0%
AGTATGTACAGAGGAGGTAG+GGG - chr1_1:72260345-72260364 Msa0041780:CDS 45.0%
! AAATCCGGTGGAGCATTTCT+AGG + chr1_1:72260381-72260400 None:intergenic 45.0%
GGATTTGCCTTCTTTGCTCT+TGG - chr1_1:72260395-72260414 Msa0041780:CDS 45.0%
CGAGAATCCAAGAGCAAAGA+AGG + chr1_1:72260405-72260424 None:intergenic 45.0%
AGAATAAGTTCTGTCACGGC+TGG + chr1_1:72260581-72260600 None:intergenic 45.0%
AGCCGTGACAGAACTTATTC+TGG - chr1_1:72260580-72260599 Msa0041780:intron 45.0%
! TCTGGCTCAACTTATGTGGT+TGG - chr1_1:72260598-72260617 Msa0041780:intron 45.0%
GAATGAGAAGAATGAGACCG+TGG - chr1_1:72260773-72260792 Msa0041780:intron 45.0%
AGCATCAGTTTCTGATCCCA+CGG + chr1_1:72260793-72260812 None:intergenic 45.0%
CTACACTGTGAATTTGGCCA+TGG - chr1_1:72261008-72261027 Msa0041780:intron 45.0%
CAGACAGAATCATTGCTGCT+TGG + chr1_1:72261041-72261060 None:intergenic 45.0%
GCAGCAATGATTCTGTCTGT+TGG - chr1_1:72261042-72261061 Msa0041780:intron 45.0%
ATGAATGTGGCAGTACAGCA+CGG + chr1_1:72261080-72261099 None:intergenic 45.0%
CACTTGATCTGTGGACTTTC+GGG + chr1_1:72261697-72261716 None:intergenic 45.0%
CCACTTGATCTGTGGACTTT+CGG + chr1_1:72261698-72261717 None:intergenic 45.0%
CAACAGAACCACTTGATCTG+TGG + chr1_1:72261706-72261725 None:intergenic 45.0%
! GTGGTTCTGTTGCAGATATG+TGG - chr1_1:72261714-72261733 Msa0041780:intron 45.0%
ATGCATACAGGCAAAAGAGC+TGG - chr1_1:72261835-72261854 Msa0041780:intron 45.0%
AGCTGTTGGCAAAAGGAACA+GGG - chr1_1:72261882-72261901 Msa0041780:intron 45.0%
ATTCTATGGCATCCTGTGGT+TGG + chr1_1:72261955-72261974 None:intergenic 45.0%
CCACAGGATGCCATAGAATA+CGG - chr1_1:72261956-72261975 Msa0041780:intron 45.0%
! GGGAAAGTGCATATGAGAAG+CGG - chr1_1:72262011-72262030 Msa0041780:intron 45.0%
! GGAAAGTGCATATGAGAAGC+GGG - chr1_1:72262012-72262031 Msa0041780:intron 45.0%
! CCACCAACCTTTAAAGGCAT+TGG + chr1_1:72262242-72262261 None:intergenic 45.0%
! CCAATGCCTTTAAAGGTTGG+TGG - chr1_1:72262239-72262258 Msa0041780:intron 45.0%
!! CTGTATCTGTACATTGGCTC+TGG - chr1_1:72262363-72262382 Msa0041780:intron 45.0%
!! GTATCTGTACATTGGCTCTG+GGG - chr1_1:72262365-72262384 Msa0041780:intron 45.0%
!! TATCTGTACATTGGCTCTGG+GGG - chr1_1:72262366-72262385 Msa0041780:intron 45.0%
GAGAAAATGACTAGGCCTTG+GGG - chr1_1:72262441-72262460 Msa0041780:CDS 45.0%
GGCGAGTAGTTGAAGAATCG+TGG + chr1_1:72258181-72258200 None:intergenic 50.0%
TAAGGTACAAGGATGCCCAG+AGG + chr1_1:72258807-72258826 None:intergenic 50.0%
! CGCCACTCATCTAAGGTACA+AGG + chr1_1:72258818-72258837 None:intergenic 50.0%
GGTGGAACTTGTCCTGTGTT+GGG - chr1_1:72258838-72258857 Msa0041780:CDS 50.0%
GTGGAACTTGTCCTGTGTTG+GGG - chr1_1:72258839-72258858 Msa0041780:CDS 50.0%
ATCACTATCGACCCCAACAC+AGG + chr1_1:72258853-72258872 None:intergenic 50.0%
CGTATGAGAGGGATTGTGCT+AGG - chr1_1:72258879-72258898 Msa0041780:intron 50.0%
GTGTGTGTGTATGTGTGTGG+TGG - chr1_1:72258953-72258972 Msa0041780:intron 50.0%
GTGTGTGTATGTGTGTGGTG+GGG - chr1_1:72258955-72258974 Msa0041780:intron 50.0%
TGTGTGTATGTGTGTGGTGG+GGG - chr1_1:72258956-72258975 Msa0041780:intron 50.0%
! AACCAAAGCACTCACAAGGG+GGG + chr1_1:72259002-72259021 None:intergenic 50.0%
! CAACCAAAGCACTCACAAGG+GGG + chr1_1:72259003-72259022 None:intergenic 50.0%
! CGACAACCAAAGCACTCACA+AGG + chr1_1:72259006-72259025 None:intergenic 50.0%
TGGGTTAACAATGCGGGTGA+TGG - chr1_1:72259845-72259864 Msa0041780:intron 50.0%
AAGGCCTAGAAATGCTCCAC+CGG - chr1_1:72260374-72260393 Msa0041780:CDS 50.0%
AGCAAAGAAGGCAAATCCGG+TGG + chr1_1:72260393-72260412 None:intergenic 50.0%
GTGAATTTGGCCATGGCGTT+TGG - chr1_1:72261015-72261034 Msa0041780:intron 50.0%
CCGAAAGTCCACAGATCAAG+TGG - chr1_1:72261695-72261714 Msa0041780:intron 50.0%
CATACAGGCAAAAGAGCTGG+AGG - chr1_1:72261838-72261857 Msa0041780:intron 50.0%
GAGCTGTTGGCAAAAGGAAC+AGG - chr1_1:72261881-72261900 Msa0041780:intron 50.0%
CCGTATTCTATGGCATCCTG+TGG + chr1_1:72261959-72261978 None:intergenic 50.0%
GTCAGCGAGTCCGTATTCTA+TGG + chr1_1:72261969-72261988 None:intergenic 50.0%
!! TACGTGCTCAAAGAGCACTG+CGG - chr1_1:72262130-72262149 Msa0041780:intron 50.0%
GTCTGAACTGCTTGGGGATG+CGG + chr1_1:72258292-72258311 None:intergenic 55.0%
CATCCCCAAGCAGTTCAGAC+AGG - chr1_1:72258292-72258311 Msa0041780:three_prime_UTR 55.0%
! TACCTTAGATGAGTGGCGGG+TGG - chr1_1:72258820-72258839 Msa0041780:CDS 55.0%
TTCCACCCGCCACTCATCTA+AGG + chr1_1:72258825-72258844 None:intergenic 55.0%
GGGTGGAACTTGTCCTGTGT+TGG - chr1_1:72258837-72258856 Msa0041780:CDS 55.0%
! GTGTGTATGTGTGTGGTGGG+GGG - chr1_1:72258957-72258976 Msa0041780:intron 55.0%
! ACCAAAGCACTCACAAGGGG+GGG + chr1_1:72259001-72259020 None:intergenic 55.0%
TACAGAGGAGGTAGGGGAAC+AGG - chr1_1:72260351-72260370 Msa0041780:CDS 55.0%
AGCGGCTCCTTCAGGACTTT+AGG - chr1_1:72262173-72262192 Msa0041780:intron 55.0%
CGGGGAACAAGGTGTGCATT+AGG + chr1_1:72262589-72262608 None:intergenic 55.0%
GTGGCAGTGGCGTGAGGAAA+AGG + chr1_1:72258221-72258240 None:intergenic 60.0%
!! GAAGCATCGCGGTTTGCGTG+TGG + chr1_1:72258240-72258259 None:intergenic 60.0%
GGTACAAGGATGCCCAGAGG+AGG + chr1_1:72258804-72258823 None:intergenic 60.0%
TGCTAGGTCTTGCAGCGTCG+TGG - chr1_1:72258895-72258914 Msa0041780:intron 60.0%
TCCCCCCCTTGTGAGTGCTT+TGG - chr1_1:72258997-72259016 Msa0041780:CDS 60.0%
GAGGAGGTAGGGGAACAGGA+AGG - chr1_1:72260355-72260374 Msa0041780:CDS 60.0%
! TGCTGCTTGGCCAAACGCCA+TGG + chr1_1:72261028-72261047 None:intergenic 60.0%
!! GCTCAAAGAGCACTGCGGAG+AGG - chr1_1:72262135-72262154 Msa0041780:intron 60.0%
!! CAAAGAGCACTGCGGAGAGG+TGG - chr1_1:72262138-72262157 Msa0041780:intron 60.0%
!! AGGTGGTGGGAACCCTCAAG+CGG - chr1_1:72262155-72262174 Msa0041780:intron 60.0%
AACCCTCAAGCGGCTCCTTC+AGG - chr1_1:72262165-72262184 Msa0041780:intron 60.0%
GTCCTGAAGGAGCCGCTTGA+GGG + chr1_1:72262170-72262189 None:intergenic 60.0%
AGTCCTGAAGGAGCCGCTTG+AGG + chr1_1:72262171-72262190 None:intergenic 60.0%
TTGCGTGTGGCAGTGGCGTG+AGG + chr1_1:72258227-72258246 None:intergenic 65.0%
TCGCGGTTTGCGTGTGGCAG+TGG + chr1_1:72258234-72258253 None:intergenic 65.0%
CTGCTTGGGGATGCGGTCGA+GGG + chr1_1:72258285-72258304 None:intergenic 65.0%
ACTGCTTGGGGATGCGGTCG+AGG + chr1_1:72258286-72258305 None:intergenic 65.0%
! GTGTGTGGTGGGGGGTTGTC+TGG - chr1_1:72258965-72258984 Msa0041780:intron 65.0%
!! AGAGCACTGCGGAGAGGTGG+TGG - chr1_1:72262141-72262160 Msa0041780:intron 65.0%
! GAGCACTGCGGAGAGGTGGT+GGG - chr1_1:72262142-72262161 Msa0041780:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 72258070 72262658 72258070 ID=Msa0041780;Name=Msa0041780
chr1_1 mRNA 72258070 72262658 72258070 ID=Msa0041780-mRNA-1;Parent=Msa0041780;Name=Msa0041780-mRNA-1;_AED=0.06;_eAED=0.06;_QI=67|1|1|1|1|1|9|464|373
chr1_1 exon 72258070 72258611 72258070 ID=Msa0041780-mRNA-1:exon:24039;Parent=Msa0041780-mRNA-1
chr1_1 exon 72258695 72258883 72258695 ID=Msa0041780-mRNA-1:exon:24038;Parent=Msa0041780-mRNA-1
chr1_1 exon 72258986 72259047 72258986 ID=Msa0041780-mRNA-1:exon:24037;Parent=Msa0041780-mRNA-1
chr1_1 exon 72259626 72259737 72259626 ID=Msa0041780-mRNA-1:exon:24036;Parent=Msa0041780-mRNA-1
chr1_1 exon 72259892 72259954 72259892 ID=Msa0041780-mRNA-1:exon:24035;Parent=Msa0041780-mRNA-1
chr1_1 exon 72260052 72260156 72260052 ID=Msa0041780-mRNA-1:exon:24034;Parent=Msa0041780-mRNA-1
chr1_1 exon 72260282 72260482 72260282 ID=Msa0041780-mRNA-1:exon:24033;Parent=Msa0041780-mRNA-1
chr1_1 exon 72261073 72261188 72261073 ID=Msa0041780-mRNA-1:exon:24032;Parent=Msa0041780-mRNA-1
chr1_1 exon 72262396 72262658 72262396 ID=Msa0041780-mRNA-1:exon:24031;Parent=Msa0041780-mRNA-1
chr1_1 five_prime_UTR 72262592 72262658 72262592 ID=Msa0041780-mRNA-1:five_prime_utr;Parent=Msa0041780-mRNA-1
chr1_1 CDS 72262396 72262591 72262396 ID=Msa0041780-mRNA-1:cds;Parent=Msa0041780-mRNA-1
chr1_1 CDS 72261073 72261188 72261073 ID=Msa0041780-mRNA-1:cds;Parent=Msa0041780-mRNA-1
chr1_1 CDS 72260282 72260482 72260282 ID=Msa0041780-mRNA-1:cds;Parent=Msa0041780-mRNA-1
chr1_1 CDS 72260052 72260156 72260052 ID=Msa0041780-mRNA-1:cds;Parent=Msa0041780-mRNA-1
chr1_1 CDS 72259892 72259954 72259892 ID=Msa0041780-mRNA-1:cds;Parent=Msa0041780-mRNA-1
chr1_1 CDS 72259626 72259737 72259626 ID=Msa0041780-mRNA-1:cds;Parent=Msa0041780-mRNA-1
chr1_1 CDS 72258986 72259047 72258986 ID=Msa0041780-mRNA-1:cds;Parent=Msa0041780-mRNA-1
chr1_1 CDS 72258695 72258883 72258695 ID=Msa0041780-mRNA-1:cds;Parent=Msa0041780-mRNA-1
chr1_1 CDS 72258534 72258611 72258534 ID=Msa0041780-mRNA-1:cds;Parent=Msa0041780-mRNA-1
chr1_1 three_prime_UTR 72258070 72258533 72258070 ID=Msa0041780-mRNA-1:three_prime_utr;Parent=Msa0041780-mRNA-1
Gene Sequence

>Msa0041780

ATGTCTTCTTCGCTCTCACCATCACTCTCTTCACCATTCATCCACGATTCTTCAACTACTCGCCATGGAACTAAGCTTCTTCCTTTTCCTCACGCCACTGCCACACGCAAACCGCGATGCTTCAAGTCCTTTTCTTTTAACTGCTCCCTCGACCGCATCCCCAAGCAGTTCAGACAGGAAAATCTCAAAGATGGATTGATGAACAATTACAAGAATGCACCGCAGTTTCTATATGGTCTTAATCCCTCGCAAATGGACATGTTCATAAATGCAGACAATCCTGTGCATCAGATGTCTGAAAGAGTTACAGAGGAAAGCATTTCATCTGCCAAAAGTTATTTGGCTCATAGTGGGATGAGTAGTGTATCTAGCATGGATACTAATGCATCTTCAAGACACAGCATGAGTGTTAGTATGTACAGAGGAGGTAGGGGAACAGGAAGGCCTAGAAATGCTCCACCGGATTTGCCTTCTTTGCTCTTGGATTCTCGGATATGTTATCTTGGTATGCCGATTGTACCAGCCGTGACAGAACTTATTCTGGCTCAACTTATGTGGTTGGATTATGATAACCCTGCCAAACCTGTTTATTTATATATTAATTCGTCTGGGACTCAGAATGAGAAGAATGAGACCGTGGGATCAGAAACTGATGCTTATTCCATCGCTGATATGATTTCTTATATCAAATCTGATGTCTACACTGTGAATTTGGCCATGGCGTTTGGCCAAGCAGCAATGATTCTGTCTGTTGGAAAAAAGGGTTACCGTGCTGTACTGCCACATTCATCCACAAAAGTATTTCTCCCGAAAGTCCACAGATCAAGTGGTTCTGTTGCAGATATGTGGATTAAGGCAAAAGAGCTGGAGGCAAATTCTGAGTATTACATTGAGCTGTTGGCAAAAGGAACAGGGAAGTCAAAGGAAGAAATTGCTAAAGACGTCCAGAGGACTAGATATTTCCAACCACAGGATGCCATAGAATACGGACTCGCTGACAAAATAATGTATTCAATGGATGGGGAAAGTGCATATGAGAAGCGGAATTATGATGAAATACGTGCTCAAAGAGCACTGCGGAGAGGTGGTGGGAACCCTCAAGCGGCTCCTTCAGGACTTTAG

Protein sequence

>Msa0041780

MSSSLSPSLSSPFIHDSSTTRHGTKLLPFPHATATRKPRCFKSFSFNCSLDRIPKQFRQENLKDGLMNNYKNAPQFLYGLNPSQMDMFINADNPVHQMSERVTEESISSAKSYLAHSGMSSVSSMDTNASSRHSMSVSMYRGGRGTGRPRNAPPDLPSLLLDSRICYLGMPIVPAVTELILAQLMWLDYDNPAKPVYLYINSSGTQNEKNETVGSETDAYSIADMISYIKSDVYTVNLAMAFGQAAMILSVGKKGYRAVLPHSSTKVFLPKVHRSSGSVADMWIKAKELEANSEYYIELLAKGTGKSKEEIAKDVQRTRYFQPQDAIEYGLADKIMYSMDGESAYEKRNYDEIRAQRALRRGGGNPQAAPSGL*