AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0264020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0264020 MtrunA17_Chr2g0327771 91.339 508 14 2 5 483 1 507 0.0 938
Msa0264020 MtrunA17_Chr4g0050151 68.052 385 122 1 96 480 129 512 0.0 555
Msa0264020 MtrunA17_Chr2g0279401 68.041 388 123 1 96 483 136 522 0.0 554
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0264020 AT5G59750.1 65.107 513 132 7 5 482 2 502 0.0 651
Msa0264020 AT5G59750.2 78.920 389 82 0 94 482 148 536 0.0 650
Msa0264020 AT5G64300.1 69.610 385 116 1 96 480 143 526 0.0 567
Msa0264020 AT5G59750.3 62.009 458 127 7 5 427 2 447 0.0 541
Msa0264020 AT2G22450.1 60.055 363 136 3 96 458 121 474 6.36e-152 441

Find 110 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAAATTTGTTGGTCTAAA+AGG 0.157959 2_2:-63828487 Msa0264020:CDS
TGTTTAACTGGGGATATATT+TGG 0.172347 2_2:-63829346 Msa0264020:CDS
TGTCACATCTTCCTACTAAA+TGG 0.198867 2_2:-63829608 Msa0264020:CDS
TATTGTTAGGATGCAAAATA+TGG 0.229542 2_2:-63830190 Msa0264020:intron
ACCAAAATGGGTCATATCTA+TGG 0.241057 2_2:-63828382 Msa0264020:CDS
ACCTTGATCTTGCAAATTAT+AGG 0.252533 2_2:+63829192 None:intergenic
GAACAACAAGGTGAGAAATT+TGG 0.257120 2_2:-63831020 Msa0264020:CDS
CCCATAGATATGACCCATTT+TGG 0.264968 2_2:+63828381 None:intergenic
TACTGAGGCTTCTGTAGATT+TGG 0.288351 2_2:-63830020 Msa0264020:CDS
GTCCAAGCAAACATAGATTT+GGG 0.316048 2_2:-63829160 Msa0264020:CDS
AGTCCAAGCAAACATAGATT+TGG 0.316830 2_2:-63829161 Msa0264020:CDS
GTACATTCAGAATGTTTAAC+TGG 0.320458 2_2:-63829358 Msa0264020:CDS
TTTGTTGGTCTAAAAGGATA+TGG 0.325230 2_2:-63828481 Msa0264020:CDS
ATCTATGGGTCTGATATATA+AGG 0.326183 2_2:-63828367 Msa0264020:exon
CGCTTGTTTGCTTCAGTGAT+TGG 0.328210 2_2:+63828424 None:intergenic
CCACCATTTCTATACTTAAG+AGG 0.347032 2_2:+63830064 None:intergenic
ATAAAATATGTACCTTGAAT+TGG 0.360216 2_2:+63831172 None:intergenic
TGATGTTGAAGATGGAAATA+TGG 0.367048 2_2:-63829951 Msa0264020:CDS
TCGGAGAAAACGAGAGAAAT+TGG 0.372980 2_2:-63829646 Msa0264020:CDS
TTCTGTAGATTTGGTTGCAT+TGG 0.388739 2_2:-63830011 Msa0264020:CDS
GTAGATTTGGTTGCATTGGC+AGG 0.388977 2_2:-63830007 Msa0264020:CDS
GTCACATCTTCCTACTAAAT+GGG 0.389348 2_2:-63829607 Msa0264020:CDS
AAATCAGTTATTGAAACAAT+TGG 0.389681 2_2:+63829884 None:intergenic
ACTCATCATAGTGTAAGATT+TGG 0.392279 2_2:-63831049 Msa0264020:CDS
TCATAGCCAAATCTAGTTGC+TGG 0.393601 2_2:+63829302 None:intergenic
TTTCAATAACTGATTTGATA+AGG 0.394612 2_2:-63829877 Msa0264020:intron
AGAGCTGTGAGAACAGAAAA+TGG 0.400675 2_2:+63829977 None:intergenic
AACAATCCAGCAAAATTTGT+TGG 0.402087 2_2:-63828496 Msa0264020:CDS
TTTCCTCTTAAGTATAGAAA+TGG 0.404838 2_2:-63830067 Msa0264020:CDS
TAATTTGATGTCCCTGCCTA+TGG 0.413918 2_2:-63831237 Msa0264020:exon
ATGTGTTCTTCGATGAATCT+TGG 0.421814 2_2:+63828319 None:intergenic
AAGTCCTCGGATTTCGACTC+TGG 0.423258 2_2:+63830109 None:intergenic
CTGTGGCCAGCAACTAGATT+TGG 0.426292 2_2:-63829308 Msa0264020:CDS
TGAAATAGACCCCATTTAGT+AGG 0.431751 2_2:+63829597 None:intergenic
GAAGGAAGAGGCATTGGGTT+AGG 0.438985 2_2:-63829229 Msa0264020:CDS
GAATCCTCTTCTTCAGTCTC+AGG 0.446487 2_2:+63830330 None:intergenic
TTCTCACCTTGTTGTTCCAC+AGG 0.446496 2_2:+63831026 None:intergenic
ACCCCAAATCTATGTTTGCT+TGG 0.446947 2_2:+63829158 None:intergenic
TGTTGAAGGGAATCTTATAA+AGG 0.455110 2_2:-63830469 Msa0264020:CDS
TTTATGATTAAACATGGATC+AGG 0.455192 2_2:-63830414 Msa0264020:CDS
AGCGTTACCTAGAAACAAAA+AGG 0.456329 2_2:-63828405 Msa0264020:CDS
GCTGTTGATGCTCGTGAGTA+TGG 0.457469 2_2:-63829133 Msa0264020:CDS
ATGAAATTGATTGAAGAAGC+TGG 0.460792 2_2:-63829283 Msa0264020:CDS
GATGAAAACAACAATGTTGA+AGG 0.466495 2_2:-63830483 Msa0264020:CDS
GGTCATGAAGGAAGAGGCAT+TGG 0.482864 2_2:-63829235 Msa0264020:CDS
TTGGTTGCTTAGGGAAACAT+AGG 0.482975 2_2:-63829406 Msa0264020:intron
CCACTGTGATAGTGAAAGTA+GGG 0.484212 2_2:+63830301 None:intergenic
AATCATAAATGCCACATCCT+TGG 0.486532 2_2:+63830428 None:intergenic
GCCTATAATTTGCAAGATCA+AGG 0.487252 2_2:-63829193 Msa0264020:CDS
GGAGTAATTGTGTATCTTAG+AGG 0.493061 2_2:-63829256 Msa0264020:CDS
ATAGAAATGGTGGAGTGCTT+AGG 0.494926 2_2:-63830054 Msa0264020:CDS
CCCACGTCATCACCAATTCA+AGG 0.497388 2_2:-63831184 Msa0264020:intron
TGAGTATGGCATTGGTGCCC+AGG 0.497742 2_2:-63829119 Msa0264020:intron
ACGTGGGAAATCAAAGGACT+AGG 0.503550 2_2:+63831200 None:intergenic
GCTCTTGTTGATGTTGAAGA+TGG 0.508607 2_2:-63829959 Msa0264020:CDS
TTGATTGAAGAAGCTGGAAG+AGG 0.514495 2_2:-63829277 Msa0264020:CDS
TGGAACTTCCACGGGTGTAT+CGG 0.515831 2_2:-63830170 Msa0264020:CDS
CCTCTTAAGTATAGAAATGG+TGG 0.517951 2_2:-63830064 Msa0264020:CDS
GGTGGAGTGCTTAGGAGAGC+TGG 0.520674 2_2:-63830046 Msa0264020:CDS
TGTTATAGTTCAAAGTTGGA+TGG 0.520999 2_2:-63829567 Msa0264020:CDS
GCTTAGGGAAACATAGGAGA+TGG 0.523904 2_2:-63829400 Msa0264020:intron
ATATTGTTATAGTTCAAAGT+TGG 0.524855 2_2:-63829571 Msa0264020:CDS
TCAGTCTCAGGTGACATAAG+AGG 0.529829 2_2:+63830342 None:intergenic
GGGAATGAAGCAGAGTCCAT+AGG 0.530818 2_2:+63831221 None:intergenic
GGATATGGTTTAGCTGTGAC+AGG 0.532359 2_2:-63828466 Msa0264020:CDS
GCAAAATATGGAACTTCCAC+GGG 0.535098 2_2:-63830178 Msa0264020:CDS
ACATTGGAGTTCGAACTATG+AGG 0.535750 2_2:-63828528 Msa0264020:CDS
CCAAAATGGGTCATATCTAT+GGG 0.544969 2_2:-63828381 Msa0264020:CDS
TATTTATTCAAAGCTTGCAT+CGG 0.545583 2_2:-63831081 Msa0264020:intron
GGATCAGGAATAGTTTCTGT+TGG 0.545719 2_2:-63830399 Msa0264020:CDS
ATGAAGCAGAGTCCATAGGC+AGG 0.546682 2_2:+63831225 None:intergenic
TCAGTGATTGGTGTTAGCAC+AGG 0.547814 2_2:+63828436 None:intergenic
GTCACCTGAGACTGAAGAAG+AGG 0.559881 2_2:-63830334 Msa0264020:CDS
TGAGCATGTGGCTGTTGTAA+AGG 0.560783 2_2:-63829541 Msa0264020:intron
CTTAGAGGTCATGAAGGAAG+AGG 0.564446 2_2:-63829241 Msa0264020:CDS
CGTGGGAAATCAAAGGACTA+GGG 0.566760 2_2:+63831201 None:intergenic
TCTTGTTAGTACCAAGGATG+TGG 0.568018 2_2:-63830439 Msa0264020:CDS
TGCAAAATATGGAACTTCCA+CGG 0.569828 2_2:-63830179 Msa0264020:CDS
TTCTGTTGGCATGAAAGAAG+AGG 0.576477 2_2:-63830385 Msa0264020:CDS
TTCCACGGGTGTATCGGCTG+CGG 0.588754 2_2:-63830164 Msa0264020:CDS
ACCACTGTGATAGTGAAAGT+AGG 0.590650 2_2:+63830300 None:intergenic
GTCATGAAGGAAGAGGCATT+GGG 0.591268 2_2:-63829234 Msa0264020:CDS
ATGAAAACAACAATGTTGAA+GGG 0.595372 2_2:-63830482 Msa0264020:CDS
TACATTCAGAATGTTTAACT+GGG 0.597083 2_2:-63829357 Msa0264020:CDS
CTTAGGGAAACATAGGAGAT+GGG 0.597548 2_2:-63829399 Msa0264020:intron
GATGCTCGTGAGTATGGCAT+TGG 0.608440 2_2:-63829127 Msa0264020:CDS
GTGTATCTTAGAGGTCATGA+AGG 0.608731 2_2:-63829247 Msa0264020:CDS
GGGATATATTTGGATCAGCT+CGG 0.611108 2_2:-63829336 Msa0264020:CDS
GTGGCATTTATGATTAAACA+TGG 0.613664 2_2:-63830420 Msa0264020:CDS
TCCGAGGACTTAAGAAAACC+AGG 0.619694 2_2:-63830097 Msa0264020:CDS
ATCCGCAGCCGATACACCCG+TGG 0.629180 2_2:+63830162 None:intergenic
ATTTGGCCTGTGGAACAACA+AGG 0.634139 2_2:-63831032 Msa0264020:CDS
ATAGTGTAAGATTTGGCCTG+TGG 0.635119 2_2:-63831042 Msa0264020:CDS
TCACATCTTCCTACTAAATG+GGG 0.639715 2_2:-63829606 Msa0264020:CDS
AGCATCTCTTGTTAGTACCA+AGG 0.640073 2_2:-63830445 Msa0264020:CDS
GAAGACGTGTTTGATGATAG+TGG 0.645204 2_2:-63830962 Msa0264020:CDS
TGAAGCAGAGTCCATAGGCA+GGG 0.649337 2_2:+63831226 None:intergenic
GTGATGACGTGGGAAATCAA+AGG 0.652787 2_2:+63831194 None:intergenic
ACCTTGAATTGGTGATGACG+TGG 0.653143 2_2:+63831183 None:intergenic
GGATCAGCTCGGTGTGACTG+TGG 0.657027 2_2:-63829325 Msa0264020:CDS
TCCAAGCAAACATAGATTTG+GGG 0.659816 2_2:-63829159 Msa0264020:CDS
TCTCAGGTGACATAAGAGGA+AGG 0.670240 2_2:+63830346 None:intergenic
ATCTCCAGAGTCGAAATCCG+AGG 0.671355 2_2:-63830113 Msa0264020:CDS
CACTGTGATAGTGAAAGTAG+GGG 0.673445 2_2:+63830302 None:intergenic
TAGGAGAGCTGGTCATACTG+AGG 0.694929 2_2:-63830035 Msa0264020:CDS
ACATTCAGAATGTTTAACTG+GGG 0.696460 2_2:-63829356 Msa0264020:CDS
GTTGGATGGAACTGAGCATG+TGG 0.707210 2_2:-63829553 Msa0264020:CDS
CCTTGAATTGGTGATGACGT+GGG 0.735027 2_2:+63831184 None:intergenic
GCTGTGAGAACAGAAAATGG+TGG 0.741200 2_2:+63829980 None:intergenic
CCCTACTTTCACTATCACAG+TGG 0.748231 2_2:-63830301 Msa0264020:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAAAAAAAATATTGATAT+AGG + chr2_2:63828952-63828971 None:intergenic 10.0%
!!! GTTTTTGTTTTTTTAAAATT+CGG + chr2_2:63830497-63830516 None:intergenic 10.0%
!!! ACTTTTAAAATAATATTCAA+AGG - chr2_2:63831215-63831234 Msa0264020:CDS 10.0%
!! TTGTGTAATATATTATTGTT+AGG - chr2_2:63829271-63829290 Msa0264020:CDS 15.0%
!! TCTGAATTATAATTTCTTAT+TGG - chr2_2:63830049-63830068 Msa0264020:CDS 15.0%
!! ATAAAATATGTACCTTGAAT+TGG + chr2_2:63828305-63828324 None:intergenic 20.0%
!! GATTTGAAGAAAAATGAAAA+TGG - chr2_2:63828536-63828555 Msa0264020:CDS 20.0%
!!! GATGACATTTTATTAAGTAA+TGG - chr2_2:63828903-63828922 Msa0264020:intron 20.0%
!!! AATGCTAAGTTTTTTAAACT+GGG + chr2_2:63829557-63829576 None:intergenic 20.0%
!! AAATCAGTTATTGAAACAAT+TGG + chr2_2:63829593-63829612 None:intergenic 20.0%
!!! TTTCAATAACTGATTTGATA+AGG - chr2_2:63829597-63829616 Msa0264020:CDS 20.0%
!! ATATTGTTATAGTTCAAAGT+TGG - chr2_2:63829903-63829922 Msa0264020:CDS 20.0%
!! ATCTACTAATCAACATTTAT+TGG + chr2_2:63830675-63830694 None:intergenic 20.0%
!!! TGTAAAACATTTTTGAATGT+TGG - chr2_2:63830778-63830797 Msa0264020:intron 20.0%
!! GAAATATTGCAAATTATACA+AGG + chr2_2:63830852-63830871 None:intergenic 20.0%
!!! GGTACATATTTTATTTCTCT+AGG - chr2_2:63828311-63828330 Msa0264020:three_prime_UTR 25.0%
! TATTTATTCAAAGCTTGCAT+CGG - chr2_2:63828393-63828412 Msa0264020:CDS 25.0%
!!! AATTTGGCTTTTTATGCTAT+TGG - chr2_2:63828470-63828489 Msa0264020:CDS 25.0%
!!! ATTTGGCTTTTTATGCTATT+GGG - chr2_2:63828471-63828490 Msa0264020:CDS 25.0%
! ATGAAAACAACAATGTTGAA+GGG - chr2_2:63828992-63829011 Msa0264020:intron 25.0%
! TTTATGATTAAACATGGATC+AGG - chr2_2:63829060-63829079 Msa0264020:intron 25.0%
! TATATGCAACAATCTACATT+AGG + chr2_2:63829228-63829247 None:intergenic 25.0%
! TATTGTTAGGATGCAAAATA+TGG - chr2_2:63829284-63829303 Msa0264020:CDS 25.0%
! TTTCCTCTTAAGTATAGAAA+TGG - chr2_2:63829407-63829426 Msa0264020:intron 25.0%
!!! CAATGCTAAGTTTTTTAAAC+TGG + chr2_2:63829558-63829577 None:intergenic 25.0%
! CAGTTTAAAAAACTTAGCAT+TGG - chr2_2:63829556-63829575 Msa0264020:CDS 25.0%
! TATTGTTAAGCGAATTTGAT+TGG + chr2_2:63829783-63829802 None:intergenic 25.0%
!!! TACTATTCTTTAGTTTGCTT+AGG + chr2_2:63830025-63830044 None:intergenic 25.0%
!! TAATTTCTTATTGGTTGCTT+AGG - chr2_2:63830058-63830077 Msa0264020:CDS 25.0%
!! AATTTCTTATTGGTTGCTTA+GGG - chr2_2:63830059-63830078 Msa0264020:CDS 25.0%
! TACATTCAGAATGTTTAACT+GGG - chr2_2:63830117-63830136 Msa0264020:CDS 25.0%
! TAATGATCAACTAAAGTAGA+TGG - chr2_2:63830429-63830448 Msa0264020:CDS 25.0%
! TACTAATCAACATTTATTGG+TGG + chr2_2:63830672-63830691 None:intergenic 25.0%
! GATTTGTATTCACTAATACT+AGG + chr2_2:63830825-63830844 None:intergenic 25.0%
!!! CAACTTATAATAGCTTGTTT+TGG + chr2_2:63830898-63830917 None:intergenic 25.0%
AACATGAGTTCAACAAATAG+AGG + chr2_2:63828361-63828380 None:intergenic 30.0%
ACTCATCATAGTGTAAGATT+TGG - chr2_2:63828425-63828444 Msa0264020:CDS 30.0%
! TTATGCTATTGGGTTTTCTA+AGG - chr2_2:63828481-63828500 Msa0264020:CDS 30.0%
GATGAAAACAACAATGTTGA+AGG - chr2_2:63828991-63829010 Msa0264020:intron 30.0%
TGTTGAAGGGAATCTTATAA+AGG - chr2_2:63829005-63829024 Msa0264020:intron 30.0%
GTGGCATTTATGATTAAACA+TGG - chr2_2:63829054-63829073 Msa0264020:intron 30.0%
TGATGTTGAAGATGGAAATA+TGG - chr2_2:63829523-63829542 Msa0264020:intron 30.0%
TGTTATAGTTCAAAGTTGGA+TGG - chr2_2:63829907-63829926 Msa0264020:CDS 30.0%
GTACATTCAGAATGTTTAAC+TGG - chr2_2:63830116-63830135 Msa0264020:CDS 30.0%
ACATTCAGAATGTTTAACTG+GGG - chr2_2:63830118-63830137 Msa0264020:CDS 30.0%
TGTTTAACTGGGGATATATT+TGG - chr2_2:63830128-63830147 Msa0264020:CDS 30.0%
ATGAAATTGATTGAAGAAGC+TGG - chr2_2:63830191-63830210 Msa0264020:intron 30.0%
ACCTTGATCTTGCAAATTAT+AGG + chr2_2:63830285-63830304 None:intergenic 30.0%
GTGATTAAAAGATCTAACCT+GGG + chr2_2:63830375-63830394 None:intergenic 30.0%
AGTGATTAAAAGATCTAACC+TGG + chr2_2:63830376-63830395 None:intergenic 30.0%
ACTAAAGTAGATGGTATGAT+TGG - chr2_2:63830438-63830457 Msa0264020:CDS 30.0%
! GTGCATAAGTATTGTTCAAT+TGG + chr2_2:63830748-63830767 None:intergenic 30.0%
TGAACAATACTTATGCACTT+CGG - chr2_2:63830750-63830769 Msa0264020:intron 30.0%
! TGATAAATGTGCAGATTTTG+AGG - chr2_2:63830922-63830941 Msa0264020:CDS 30.0%
! GATAAATGTGCAGATTTTGA+GGG - chr2_2:63830923-63830942 Msa0264020:CDS 30.0%
AACAATCCAGCAAAATTTGT+TGG - chr2_2:63830978-63830997 Msa0264020:CDS 30.0%
! TTTAGACCAACAAATTTTGC+TGG + chr2_2:63830987-63831006 None:intergenic 30.0%
!! GCAAAATTTGTTGGTCTAAA+AGG - chr2_2:63830987-63831006 Msa0264020:CDS 30.0%
! TTTGTTGGTCTAAAAGGATA+TGG - chr2_2:63830993-63831012 Msa0264020:CDS 30.0%
!! TTTTGGTCCTTTTTGTTTCT+AGG + chr2_2:63831079-63831098 None:intergenic 30.0%
AGAAACAAAAAGGACCAAAA+TGG - chr2_2:63831079-63831098 Msa0264020:intron 30.0%
GAAACAAAAAGGACCAAAAT+GGG - chr2_2:63831080-63831099 Msa0264020:intron 30.0%
ATCTATGGGTCTGATATATA+AGG - chr2_2:63831107-63831126 Msa0264020:intron 30.0%
GAACAACAAGGTGAGAAATT+TGG - chr2_2:63828454-63828473 Msa0264020:CDS 35.0%
!! AGCGTCTAACGTTTTTAAGA+GGG + chr2_2:63828564-63828583 None:intergenic 35.0%
!! TAGCGTCTAACGTTTTTAAG+AGG + chr2_2:63828565-63828584 None:intergenic 35.0%
TTCTTTGTAAGTGAAGCTGA+AGG - chr2_2:63828617-63828636 Msa0264020:intron 35.0%
! AATTCTAGCTAACCTTTCCT+TGG + chr2_2:63828703-63828722 None:intergenic 35.0%
CGTTACGTCTAATACATGTT+TGG - chr2_2:63828734-63828753 Msa0264020:intron 35.0%
AATCATAAATGCCACATCCT+TGG + chr2_2:63829049-63829068 None:intergenic 35.0%
TGCAAAATATGGAACTTCCA+CGG - chr2_2:63829295-63829314 Msa0264020:CDS 35.0%
TTAAGAGGAAAAACATGACC+TGG + chr2_2:63829398-63829417 None:intergenic 35.0%
CCACCATTTCTATACTTAAG+AGG + chr2_2:63829413-63829432 None:intergenic 35.0%
CCTCTTAAGTATAGAAATGG+TGG - chr2_2:63829410-63829429 Msa0264020:intron 35.0%
! TTCTGTAGATTTGGTTGCAT+TGG - chr2_2:63829463-63829482 Msa0264020:intron 35.0%
TTAATGTATGTGACGCTTCA+AGG - chr2_2:63829803-63829822 Msa0264020:intron 35.0%
TGTCACATCTTCCTACTAAA+TGG - chr2_2:63829866-63829885 Msa0264020:intron 35.0%
GTCACATCTTCCTACTAAAT+GGG - chr2_2:63829867-63829886 Msa0264020:intron 35.0%
TCACATCTTCCTACTAAATG+GGG - chr2_2:63829868-63829887 Msa0264020:intron 35.0%
TGAAATAGACCCCATTTAGT+AGG + chr2_2:63829880-63829899 None:intergenic 35.0%
GGAGTAATTGTGTATCTTAG+AGG - chr2_2:63830218-63830237 Msa0264020:intron 35.0%
! GCCTATAATTTGCAAGATCA+AGG - chr2_2:63830281-63830300 Msa0264020:intron 35.0%
AGTCCAAGCAAACATAGATT+TGG - chr2_2:63830313-63830332 Msa0264020:CDS 35.0%
GTCCAAGCAAACATAGATTT+GGG - chr2_2:63830314-63830333 Msa0264020:CDS 35.0%
TCCAAGCAAACATAGATTTG+GGG - chr2_2:63830315-63830334 Msa0264020:CDS 35.0%
AGATGGTATGATTGGACTTT+CGG - chr2_2:63830446-63830465 Msa0264020:CDS 35.0%
AGCGTTACCTAGAAACAAAA+AGG - chr2_2:63831069-63831088 Msa0264020:CDS 35.0%
ACCAAAATGGGTCATATCTA+TGG - chr2_2:63831092-63831111 Msa0264020:intron 35.0%
CCAAAATGGGTCATATCTAT+GGG - chr2_2:63831093-63831112 Msa0264020:intron 35.0%
ATGTGTTCTTCGATGAATCT+TGG + chr2_2:63831158-63831177 None:intergenic 35.0%
TAATTTGATGTCCCTGCCTA+TGG - chr2_2:63828237-63828256 Msa0264020:three_prime_UTR 40.0%
ATAGTGTAAGATTTGGCCTG+TGG - chr2_2:63828432-63828451 Msa0264020:CDS 40.0%
!!! GCTATTGGGTTTTCTAAGGT+TGG - chr2_2:63828485-63828504 Msa0264020:CDS 40.0%
! GAAGACGTGTTTGATGATAG+TGG - chr2_2:63828512-63828531 Msa0264020:CDS 40.0%
!! ATGGAAGAGTACTCCTTAGA+GGG + chr2_2:63828656-63828675 None:intergenic 40.0%
!! AATGGAAGAGTACTCCTTAG+AGG + chr2_2:63828657-63828676 None:intergenic 40.0%
TCCTTGGCGTAATGCATTAA+GGG + chr2_2:63828687-63828706 None:intergenic 40.0%
TTCCTTGGCGTAATGCATTA+AGG + chr2_2:63828688-63828707 None:intergenic 40.0%
TAATGCATTACGCCAAGGAA+AGG - chr2_2:63828688-63828707 Msa0264020:intron 40.0%
AGCATCTCTTGTTAGTACCA+AGG - chr2_2:63829029-63829048 Msa0264020:intron 40.0%
TCTTGTTAGTACCAAGGATG+TGG - chr2_2:63829035-63829054 Msa0264020:intron 40.0%
GGATCAGGAATAGTTTCTGT+TGG - chr2_2:63829075-63829094 Msa0264020:intron 40.0%
TTCTGTTGGCATGAAAGAAG+AGG - chr2_2:63829089-63829108 Msa0264020:intron 40.0%
! CACTGTGATAGTGAAAGTAG+GGG + chr2_2:63829175-63829194 None:intergenic 40.0%
! CCACTGTGATAGTGAAAGTA+GGG + chr2_2:63829176-63829195 None:intergenic 40.0%
! ACCACTGTGATAGTGAAAGT+AGG + chr2_2:63829177-63829196 None:intergenic 40.0%
GCAAAATATGGAACTTCCAC+GGG - chr2_2:63829296-63829315 Msa0264020:CDS 40.0%
!! ACCTGGTTTTCTTAAGTCCT+CGG + chr2_2:63829381-63829400 None:intergenic 40.0%
! ATAGAAATGGTGGAGTGCTT+AGG - chr2_2:63829420-63829439 Msa0264020:intron 40.0%
TACTGAGGCTTCTGTAGATT+TGG - chr2_2:63829454-63829473 Msa0264020:intron 40.0%
AGAGCTGTGAGAACAGAAAA+TGG + chr2_2:63829500-63829519 None:intergenic 40.0%
GCTCTTGTTGATGTTGAAGA+TGG - chr2_2:63829515-63829534 Msa0264020:intron 40.0%
TATGTGACGCTTCAAGGTAT+CGG - chr2_2:63829809-63829828 Msa0264020:intron 40.0%
TCGGAGAAAACGAGAGAAAT+TGG - chr2_2:63829828-63829847 Msa0264020:intron 40.0%
TTGGTTGCTTAGGGAAACAT+AGG - chr2_2:63830068-63830087 Msa0264020:CDS 40.0%
CTTAGGGAAACATAGGAGAT+GGG - chr2_2:63830075-63830094 Msa0264020:CDS 40.0%
GGGATATATTTGGATCAGCT+CGG - chr2_2:63830138-63830157 Msa0264020:CDS 40.0%
TCATAGCCAAATCTAGTTGC+TGG + chr2_2:63830175-63830194 None:intergenic 40.0%
TTGATTGAAGAAGCTGGAAG+AGG - chr2_2:63830197-63830216 Msa0264020:intron 40.0%
GTGTATCTTAGAGGTCATGA+AGG - chr2_2:63830227-63830246 Msa0264020:intron 40.0%
ACCCCAAATCTATGTTTGCT+TGG + chr2_2:63830319-63830338 None:intergenic 40.0%
!! ACATTTATTGGTGGCGAGTT+TGG + chr2_2:63830663-63830682 None:intergenic 40.0%
ACATTGGAGTTCGAACTATG+AGG - chr2_2:63830946-63830965 Msa0264020:CDS 40.0%
! CCCATAGATATGACCCATTT+TGG + chr2_2:63831096-63831115 None:intergenic 40.0%
CGTGGGAAATCAAAGGACTA+GGG + chr2_2:63828276-63828295 None:intergenic 45.0%
ACGTGGGAAATCAAAGGACT+AGG + chr2_2:63828277-63828296 None:intergenic 45.0%
! GTGATGACGTGGGAAATCAA+AGG + chr2_2:63828283-63828302 None:intergenic 45.0%
!! CCTTGAATTGGTGATGACGT+GGG + chr2_2:63828293-63828312 None:intergenic 45.0%
!! ACCTTGAATTGGTGATGACG+TGG + chr2_2:63828294-63828313 None:intergenic 45.0%
ATTTGGCCTGTGGAACAACA+AGG - chr2_2:63828442-63828461 Msa0264020:CDS 45.0%
!! TTCTCACCTTGTTGTTCCAC+AGG + chr2_2:63828451-63828470 None:intergenic 45.0%
TGATCCAGATTGTCCCTCTA+AGG - chr2_2:63828640-63828659 Msa0264020:intron 45.0%
TACTCCTTAGAGGGACAATC+TGG + chr2_2:63828647-63828666 None:intergenic 45.0%
! TGCATTAAGGGCATGCTCAA+TGG + chr2_2:63828675-63828694 None:intergenic 45.0%
TCTCAGGTGACATAAGAGGA+AGG + chr2_2:63829131-63829150 None:intergenic 45.0%
TCAGTCTCAGGTGACATAAG+AGG + chr2_2:63829135-63829154 None:intergenic 45.0%
GAATCCTCTTCTTCAGTCTC+AGG + chr2_2:63829147-63829166 None:intergenic 45.0%
CCCTACTTTCACTATCACAG+TGG - chr2_2:63829173-63829192 Msa0264020:CDS 45.0%
TCCGAGGACTTAAGAAAACC+AGG - chr2_2:63829377-63829396 Msa0264020:CDS 45.0%
! GTAGATTTGGTTGCATTGGC+AGG - chr2_2:63829467-63829486 Msa0264020:intron 45.0%
GCTGTGAGAACAGAAAATGG+TGG + chr2_2:63829497-63829516 None:intergenic 45.0%
TGAGCATGTGGCTGTTGTAA+AGG - chr2_2:63829933-63829952 Msa0264020:CDS 45.0%
GCTTAGGGAAACATAGGAGA+TGG - chr2_2:63830074-63830093 Msa0264020:CDS 45.0%
CTTAGAGGTCATGAAGGAAG+AGG - chr2_2:63830233-63830252 Msa0264020:intron 45.0%
!! GTCATGAAGGAAGAGGCATT+GGG - chr2_2:63830240-63830259 Msa0264020:intron 45.0%
!! GTGCAGATTTTGAGGGACAT+TGG - chr2_2:63830930-63830949 Msa0264020:CDS 45.0%
GGATATGGTTTAGCTGTGAC+AGG - chr2_2:63831008-63831027 Msa0264020:CDS 45.0%
!! TCAGTGATTGGTGTTAGCAC+AGG + chr2_2:63831041-63831060 None:intergenic 45.0%
CGCTTGTTTGCTTCAGTGAT+TGG + chr2_2:63831053-63831072 None:intergenic 45.0%
TGAAGCAGAGTCCATAGGCA+GGG + chr2_2:63828251-63828270 None:intergenic 50.0%
ATGAAGCAGAGTCCATAGGC+AGG + chr2_2:63828252-63828271 None:intergenic 50.0%
GGGAATGAAGCAGAGTCCAT+AGG + chr2_2:63828256-63828275 None:intergenic 50.0%
CCCACGTCATCACCAATTCA+AGG - chr2_2:63828290-63828309 Msa0264020:three_prime_UTR 50.0%
GCCCTTAATGCATTACGCCA+AGG - chr2_2:63828683-63828702 Msa0264020:intron 50.0%
GTCACCTGAGACTGAAGAAG+AGG - chr2_2:63829140-63829159 Msa0264020:CDS 50.0%
TGGAACTTCCACGGGTGTAT+CGG - chr2_2:63829304-63829323 Msa0264020:CDS 50.0%
ATCTCCAGAGTCGAAATCCG+AGG - chr2_2:63829361-63829380 Msa0264020:CDS 50.0%
AAGTCCTCGGATTTCGACTC+TGG + chr2_2:63829368-63829387 None:intergenic 50.0%
TAGGAGAGCTGGTCATACTG+AGG - chr2_2:63829439-63829458 Msa0264020:intron 50.0%
GTTGGATGGAACTGAGCATG+TGG - chr2_2:63829921-63829940 Msa0264020:CDS 50.0%
CTGTGGCCAGCAACTAGATT+TGG - chr2_2:63830166-63830185 Msa0264020:CDS 50.0%
! GGTCATGAAGGAAGAGGCAT+TGG - chr2_2:63830239-63830258 Msa0264020:intron 50.0%
!! GAAGGAAGAGGCATTGGGTT+AGG - chr2_2:63830245-63830264 Msa0264020:intron 50.0%
GCTGTTGATGCTCGTGAGTA+TGG - chr2_2:63830341-63830360 Msa0264020:CDS 50.0%
GATGCTCGTGAGTATGGCAT+TGG - chr2_2:63830347-63830366 Msa0264020:CDS 50.0%
!! TGAGTATGGCATTGGTGCCC+AGG - chr2_2:63830355-63830374 Msa0264020:CDS 55.0%
!! TTCCACGGGTGTATCGGCTG+CGG - chr2_2:63829310-63829329 Msa0264020:CDS 60.0%
! GGTGGAGTGCTTAGGAGAGC+TGG - chr2_2:63829428-63829447 Msa0264020:intron 60.0%
!! GGATCAGCTCGGTGTGACTG+TGG - chr2_2:63830149-63830168 Msa0264020:CDS 60.0%
ATCCGCAGCCGATACACCCG+TGG + chr2_2:63829315-63829334 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 63828207 63831289 63828207 ID=Msa0264020;Name=Msa0264020
chr2_2 mRNA 63828207 63831289 63828207 ID=Msa0264020-mRNA-1;Parent=Msa0264020;Name=Msa0264020-mRNA-1;_AED=0.10;_eAED=0.10;_QI=37|0.83|0.85|1|0.83|0.85|7|162|483
chr2_2 exon 63828207 63828560 63828207 ID=Msa0264020-mRNA-1:exon:19872;Parent=Msa0264020-mRNA-1
chr2_2 exon 63829120 63829416 63829120 ID=Msa0264020-mRNA-1:exon:19871;Parent=Msa0264020-mRNA-1
chr2_2 exon 63829542 63829671 63829542 ID=Msa0264020-mRNA-1:exon:19870;Parent=Msa0264020-mRNA-1
chr2_2 exon 63829878 63830203 63829878 ID=Msa0264020-mRNA-1:exon:19869;Parent=Msa0264020-mRNA-1
chr2_2 exon 63830302 63830523 63830302 ID=Msa0264020-mRNA-1:exon:19868;Parent=Msa0264020-mRNA-1
chr2_2 exon 63830874 63831090 63830874 ID=Msa0264020-mRNA-1:exon:19867;Parent=Msa0264020-mRNA-1
chr2_2 exon 63831185 63831289 63831185 ID=Msa0264020-mRNA-1:exon:19866;Parent=Msa0264020-mRNA-1
chr2_2 five_prime_UTR 63831253 63831289 63831253 ID=Msa0264020-mRNA-1:five_prime_utr;Parent=Msa0264020-mRNA-1
chr2_2 CDS 63831185 63831252 63831185 ID=Msa0264020-mRNA-1:cds;Parent=Msa0264020-mRNA-1
chr2_2 CDS 63830874 63831090 63830874 ID=Msa0264020-mRNA-1:cds;Parent=Msa0264020-mRNA-1
chr2_2 CDS 63830302 63830523 63830302 ID=Msa0264020-mRNA-1:cds;Parent=Msa0264020-mRNA-1
chr2_2 CDS 63829878 63830203 63829878 ID=Msa0264020-mRNA-1:cds;Parent=Msa0264020-mRNA-1
chr2_2 CDS 63829542 63829671 63829542 ID=Msa0264020-mRNA-1:cds;Parent=Msa0264020-mRNA-1
chr2_2 CDS 63829120 63829416 63829120 ID=Msa0264020-mRNA-1:cds;Parent=Msa0264020-mRNA-1
chr2_2 CDS 63828369 63828560 63828369 ID=Msa0264020-mRNA-1:cds;Parent=Msa0264020-mRNA-1
chr2_2 three_prime_UTR 63828207 63828368 63828207 ID=Msa0264020-mRNA-1:three_prime_utr;Parent=Msa0264020-mRNA-1
Gene Sequence

>Msa0264020

ATGTCCCTGCCTATGGACTCTGCTTCATTCCCTAGTCCTTTGATTTCCCACGTCATCACCAATTCAAGCTTGCATCGGTCATGCACTACTCATCATAGTGTAAGATTTGGCCTGTGGAACAACAAGGTGAGAAATTTGGCTTTTTATGCTATTGGGTTTTCTAAGGTTGGAACTGAAGACGTGTTTGATGATAGTGGTGATTTGAAGAAAAATGAAAATGGATCCCTCTTAAAAACGTTAGACGCTACAAATGAAATAACTGATCAAGAAAATAGCGATTTCTTTTTTGTAATCGTTGTAGATGATGAAAACAACAATGTTGAAGGGAATCTTATAAAGGCAGCATCTCTTGTTAGTACCAAGGATGTGGCATTTATGATTAAACATGGATCAGGAATAGTTTCTGTTGGCATGAAAGAAGAGGATCTTCAAAGATTAAACCTTCCTCTTATGTCACCTGAGACTGAAGAAGAGGATTCATCTGCCCCTACTTTCACTATCACAGTGGATGCAAAATATGGAACTTCCACGGGTGTATCGGCTGCGGATAGAGCAAAAACAATTCTTGCTTTATCATCTCCAGAGTCGAAATCCGAGGACTTAAGAAAACCAGGTCATGTTTTTCCTCTTAAGTATAGAAATGGTGGAGTGCTTAGGAGAGCTGGTCATACTGAGGCTTCTGTAGATTTGGTTGCATTGGCAGGCTTGCCACCATTTTCTGTTCTCACAGCTCTTGTTGATGTTGAAGATGGAAATATGGCATCTTTGCCCAGTTTAAAAAACTTAGCATTGGAATATAACTTACCAATTGTTTCAATAACTGATTTGATAAGGTATCGGAGAAAACGAGAGAAATTGGTTGAAAGAACTTATGTGTCACATCTTCCTACTAAATGGGGTCTATTTCAAGCATATTGTTATAGTTCAAAGTTGGATGGAACTGAGCATGTGGCTGTTGTAAAGGGAAACATAGGAGATGGGCAAGATGTTCTAGTAAGAGTACATTCAGAATGTTTAACTGGGGATATATTTGGATCAGCTCGGTGTGACTGTGGCCAGCAACTAGATTTGGCTATGAAATTGATTGAAGAAGCTGGAAGAGGAGTAATTGTGTATCTTAGAGGTCATGAAGGAAGAGGCATTGGGTTAGGTCACAAACTTCAAGCCTATAATTTGCAAGATCAAGGTCGTGATACAGTCCAAGCAAACATAGATTTGGGGTTAGCTGTTGATGCTCGTGAGTATGGCATTGGTGCCCAGATTTTGAGGGACATTGGAGTTCGAACTATGAGGTTGATGACAAACAATCCAGCAAAATTTGTTGGTCTAAAAGGATATGGTTTAGCTGTGACAGGTCGTGTTCCTGTGCTAACACCAATCACTGAAGCAAACAAGCGTTACCTAGAAACAAAAAGGACCAAAATGGGTCATATCTATGGGTCTGATATATAA

Protein sequence

>Msa0264020

MSLPMDSASFPSPLISHVITNSSLHRSCTTHHSVRFGLWNNKVRNLAFYAIGFSKVGTEDVFDDSGDLKKNENGSLLKTLDATNEITDQENSDFFFVIVVDDENNNVEGNLIKAASLVSTKDVAFMIKHGSGIVSVGMKEEDLQRLNLPLMSPETEEEDSSAPTFTITVDAKYGTSTGVSAADRAKTILALSSPESKSEDLRKPGHVFPLKYRNGGVLRRAGHTEASVDLVALAGLPPFSVLTALVDVEDGNMASLPSLKNLALEYNLPIVSITDLIRYRRKREKLVERTYVSHLPTKWGLFQAYCYSSKLDGTEHVAVVKGNIGDGQDVLVRVHSECLTGDIFGSARCDCGQQLDLAMKLIEEAGRGVIVYLRGHEGRGIGLGHKLQAYNLQDQGRDTVQANIDLGLAVDAREYGIGAQILRDIGVRTMRLMTNNPAKFVGLKGYGLAVTGRVPVLTPITEANKRYLETKRTKMGHIYGSDI*