AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0307550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0307550 MtrunA17_Chr3g0115501 88.214 543 12 4 15 505 1 543 0.0 953
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0307550 AT1G78010.1 62.333 523 132 9 44 505 42 560 0.0 615
Msa0307550 AT3G12080.1 48.611 72 36 1 283 353 371 442 3.06e-11 66.2
Msa0307550 AT3G12080.2 48.611 72 36 1 283 353 371 442 3.24e-11 66.2

Find 136 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCTTGTAAAACTCTATC+TGG 0.183603 2_4:-508591 Msa0307550:three_prime_UTR
GTCGGAATCGTTCGTCTTTC+GGG 0.204168 2_4:-513448 Msa0307550:CDS
TCTAGATTTGAATGGGATTA+TGG 0.220713 2_4:-511561 Msa0307550:CDS
GGTATGGATGGCATTGCTGC+TGG 0.224502 2_4:-509168 Msa0307550:CDS
CGTCGGAATCGTTCGTCTTT+CGG 0.229533 2_4:-513449 Msa0307550:CDS
GCTTCTGCAATCTGGATTAC+AGG 0.317719 2_4:-511477 Msa0307550:intron
GCTTTAAAATATTAAATTCA+TGG 0.318731 2_4:+508552 None:intergenic
GTATGGATGGCATTGCTGCT+GGG 0.332288 2_4:-509167 Msa0307550:CDS
TATGACAAGCTTCTGCAATC+TGG 0.337068 2_4:-511485 Msa0307550:CDS
TGCAGTATCAAGAAGGGTTA+TGG 0.339601 2_4:+510847 None:intergenic
GAAGAAACGGTTGTTGGTTT+TGG 0.343381 2_4:+513675 None:intergenic
GAGTAAACGTTCGTCTTTGT+TGG 0.361695 2_4:+513567 None:intergenic
TTGTTGACCACAAGGATTAC+CGG 0.372060 2_4:+509330 None:intergenic
TTCTTGATACTGCAGGCATC+AGG 0.393317 2_4:-510838 Msa0307550:CDS
GAGATTACAATCATCAATAA+AGG 0.397427 2_4:-508795 Msa0307550:CDS
GCAATAGTTACTGAAATTGC+TGG 0.402773 2_4:-510917 Msa0307550:CDS
ATATTTGGCAAGTTCTGTAT+TGG 0.403495 2_4:-508671 Msa0307550:CDS
ATCAGCAGCAGCCACAGATT+TGG 0.403518 2_4:+511868 None:intergenic
TGTTGAATACGGTGTCGTTT+TGG 0.405449 2_4:-513353 Msa0307550:CDS
GCAGTATCAAGAAGGGTTAT+GGG 0.421712 2_4:+510848 None:intergenic
TTATTTGATCATAGTCAAAA+AGG 0.422549 2_4:+508479 None:intergenic
GAGGGCAGTCTTAGAGATTG+TGG 0.422797 2_4:-509190 Msa0307550:CDS
CTGTAACGACAGGAATCAAC+TGG 0.423468 2_4:-509363 Msa0307550:intron
AGGCTTGACTTGCCAACATT+AGG 0.424454 2_4:+511245 None:intergenic
GAAGCAAGTATCAACATTAA+CGG 0.429830 2_4:-510875 Msa0307550:CDS
CGAACGATTCCGACGGCGGC+AGG 0.431999 2_4:+513457 None:intergenic
GCAGCCATTGTAACATCCTT+AGG 0.432367 2_4:-513487 Msa0307550:CDS
TAATCTCACAAGTGCTTCCT+TGG 0.434972 2_4:+508811 None:intergenic
TTCTTGCAGATAGCAATTGT+TGG 0.442984 2_4:-511272 Msa0307550:intron
TATGGATGGCATTGCTGCTG+GGG 0.443424 2_4:-509166 Msa0307550:CDS
CTTTGCTCCATGCATTAAGA+AGG 0.448231 2_4:+511225 None:intergenic
TCTCAACATCTTGTGACATA+TGG 0.450538 2_4:+511528 None:intergenic
CCTCCCTACTTGGTGCTAAG+TGG 0.454615 2_4:-508630 Msa0307550:three_prime_UTR
TCGCAGATGGACCGTCAATC+AGG 0.455562 2_4:-509142 Msa0307550:intron
CGCCACGTGGCGGTAGTTGG+TGG 0.456681 2_4:+513649 None:intergenic
TGCCACCTCTAGATTTGAAT+GGG 0.457425 2_4:-511568 Msa0307550:CDS
GACAATGTGAACAACTTGTT+CGG 0.471067 2_4:-508835 Msa0307550:CDS
AGGTGCTGATTTAATTATCA+TGG 0.471586 2_4:-510298 Msa0307550:CDS
ATTCATGGAGGTACGTGTAC+TGG 0.472495 2_4:+508567 None:intergenic
AATAAAGGAAGAACTACCTA+TGG 0.476692 2_4:-508780 Msa0307550:CDS
TCCCATTCAGTCTCTGCACA+AGG 0.479917 2_4:+509294 None:intergenic
TTTGTCTAGAAGTACACTTT+CGG 0.482745 2_4:+508388 None:intergenic
AATACAGTTCCCTCCCTACT+TGG 0.491522 2_4:-508640 Msa0307550:three_prime_UTR
AACGATTCCGACGGCGGCAG+GGG 0.497132 2_4:+513459 None:intergenic
CAACAAGAGCAGATAGCAAA+AGG 0.499136 2_4:-513763 Msa0307550:CDS
ACTAGTCATGTTGTTGAATA+CGG 0.499306 2_4:-513364 Msa0307550:CDS
TAAGTCTTGTAATCCTTGAC+TGG 0.500007 2_4:+509215 None:intergenic
CATAGCCATGGCCATCGCTC+TGG 0.500566 2_4:+513735 None:intergenic
AATCTTGTAAAACTCTATCT+GGG 0.502514 2_4:-508590 Msa0307550:three_prime_UTR
CTATCTCAGGCTGAAAATGT+TGG 0.502988 2_4:-511905 Msa0307550:CDS
ATGCCACCTCTAGATTTGAA+TGG 0.505081 2_4:-511569 Msa0307550:CDS
TGGTCGTCTGGATCTATCTC+AGG 0.507597 2_4:-511918 Msa0307550:CDS
CCGCACGCGGTGTCTATCGC+GGG 0.507948 2_4:-513424 Msa0307550:CDS
TGACGCCACGTGGCGGTAGT+TGG 0.510315 2_4:+513646 None:intergenic
AGTCTTAGAGATTGTGGGTA+TGG 0.511281 2_4:-509184 Msa0307550:CDS
TGGAGTGAAGAAACGGTTGT+TGG 0.515841 2_4:+513669 None:intergenic
AGCCTTGTGCAGAGACTGAA+TGG 0.517001 2_4:-509296 Msa0307550:CDS
AAACTGATTGATTTGAGGGT+GGG 0.517457 2_4:+508420 None:intergenic
AGGGATGCTGCATTGTCACT+TGG 0.519129 2_4:-508737 Msa0307550:CDS
ATGATATCATACCTGATTGA+CGG 0.519741 2_4:+509131 None:intergenic
GAACGATTCCGACGGCGGCA+GGG 0.524304 2_4:+513458 None:intergenic
TTGTCACTTGGACAGATAAG+TGG 0.525014 2_4:-508725 Msa0307550:CDS
TTTGGATTCCGATGGAAATG+TGG 0.527027 2_4:-513335 Msa0307550:CDS
TTAGAGATTGTGGGTATGGA+TGG 0.532667 2_4:-509180 Msa0307550:CDS
GTTGTTGAACTTCAATGTCA+TGG 0.533379 2_4:-513256 Msa0307550:CDS
TATTCAACAACATGACTAGT+AGG 0.533705 2_4:+513367 None:intergenic
TGTTGAGAATGCATTGGAAA+CGG 0.536515 2_4:-511513 Msa0307550:CDS
ATAACCCTTCTTGATACTGC+AGG 0.539605 2_4:-510845 Msa0307550:CDS
CGATCTGAAGCTGCTGCTAG+AGG 0.542217 2_4:-510318 Msa0307550:CDS
ACATGTGCTGTAACCAGTCA+AGG 0.542704 2_4:-509228 Msa0307550:CDS
TCCGCACGCGGTGTCTATCG+CGG 0.544538 2_4:-513425 Msa0307550:CDS
AAAACCACTTAGCACCAAGT+AGG 0.549300 2_4:+508626 None:intergenic
TGTCACTTGGACAGATAAGT+GGG 0.555119 2_4:-508724 Msa0307550:CDS
ATTGTTGGCCGTCCTAATGT+TGG 0.555329 2_4:-511257 Msa0307550:CDS
AGGGCAGTCTTAGAGATTGT+GGG 0.556340 2_4:-509189 Msa0307550:CDS
AAAATAGTTATACATAGCAC+TGG 0.557988 2_4:+508456 None:intergenic
AAACCACTTAGCACCAAGTA+GGG 0.559204 2_4:+508627 None:intergenic
GCCACATGTTTCTCGCGGGT+CGG 0.564172 2_4:+513392 None:intergenic
TGTTGACCACAAGGATTACC+GGG 0.564759 2_4:+509331 None:intergenic
AGTCAAGCCTTCTTAATGCA+TGG 0.572156 2_4:-511232 Msa0307550:CDS
ATGGATGGCATTGCTGCTGG+GGG 0.572959 2_4:-509165 Msa0307550:CDS
AAAACTGATTGATTTGAGGG+TGG 0.573382 2_4:+508419 None:intergenic
TGATGCCTGCAGTATCAAGA+AGG 0.577067 2_4:+510840 None:intergenic
TCGTCTTTCGGGTCCGCACG+CGG 0.577355 2_4:-513437 Msa0307550:CDS
TATATTTGATAAAACCTCCT+CGG 0.579088 2_4:+508691 None:intergenic
GCCTTGTGCAGAGACTGAAT+GGG 0.579349 2_4:-509295 Msa0307550:CDS
TTGTTGAACTTCAATGTCAT+GGG 0.580501 2_4:-513255 Msa0307550:CDS
AAGGATTACAAGACTTAGAG+AGG 0.583392 2_4:-509209 Msa0307550:CDS
CACTTAGCACCAAGTAGGGA+GGG 0.593522 2_4:+508631 None:intergenic
ATCAACTGGATCTTCAACCC+CGG 0.594015 2_4:-509349 Msa0307550:CDS
TAGTTGGTGGAGTGAAGAAA+CGG 0.597002 2_4:+513662 None:intergenic
GGCCGCCACATGTTTCTCGC+GGG 0.600817 2_4:+513388 None:intergenic
ACAAGATGTTGAGAATGCAT+TGG 0.601302 2_4:-511519 Msa0307550:CDS
CAGAACCAGAGCGATGGCCA+TGG 0.602088 2_4:-513740 Msa0307550:CDS
ACGATTCCGACGGCGGCAGG+GGG 0.602863 2_4:+513460 None:intergenic
AATCTATCTTGTTGACCACA+AGG 0.604604 2_4:+509322 None:intergenic
TCTTGATACTGCAGGCATCA+GGG 0.606241 2_4:-510837 Msa0307550:CDS
CTCATCGACCACATTTCCAT+CGG 0.611268 2_4:+513327 None:intergenic
TACAATAAAACTGATCCCCA+CGG 0.611719 2_4:+508530 None:intergenic
AGGCCGCCACATGTTTCTCG+CGG 0.615162 2_4:+513387 None:intergenic
ATAATCCCATTCAAATCTAG+AGG 0.615783 2_4:+511563 None:intergenic
CGATGGAAATGTGGTCGATG+AGG 0.618613 2_4:-513326 Msa0307550:CDS
TCCGACCCGCGAGAAACATG+TGG 0.624515 2_4:-513393 Msa0307550:CDS
CAGTATCAAGAAGGGTTATG+GGG 0.625181 2_4:+510849 None:intergenic
AAGACGAACGATTCCGACGG+CGG 0.629919 2_4:+513453 None:intergenic
TGAACAACTTGTTCGGACCA+AGG 0.630361 2_4:-508828 Msa0307550:CDS
CCACTTAGCACCAAGTAGGG+AGG 0.630943 2_4:+508630 None:intergenic
TACGACCTTGGTGCTAACAT+CGG 0.633093 2_4:+513292 None:intergenic
TCTTCACGAGTATACGACCT+TGG 0.636759 2_4:+513280 None:intergenic
ATCCCATTCAAATCTAGAGG+TGG 0.637267 2_4:+511566 None:intergenic
TTGACTTGCCAACATTAGGA+CGG 0.637499 2_4:+511249 None:intergenic
TTCAACCCCGGTAATCCTTG+TGG 0.639182 2_4:-509337 Msa0307550:CDS
CAGGGACACTGATGACATTG+TGG 0.639357 2_4:-510819 Msa0307550:CDS
GCAGAGACTGAATGGGACAA+AGG 0.640900 2_4:-509288 Msa0307550:CDS
GATGCCTGCAGTATCAAGAA+GGG 0.640954 2_4:+510841 None:intergenic
AAAAGGCAGAACCAGAGCGA+TGG 0.651136 2_4:-513746 Msa0307550:CDS
ACCGCCTAAGGATGTTACAA+TGG 0.656047 2_4:+513483 None:intergenic
AGGATTACAAGACTTAGAGA+GGG 0.656413 2_4:-509208 Msa0307550:CDS
TTAAAATATTAAATTCATGG+AGG 0.661998 2_4:+508555 None:intergenic
CGAAAGACGAACGATTCCGA+CGG 0.662368 2_4:+513450 None:intergenic
TGTGGTCGATGAGGTTATAG+CGG 0.663930 2_4:-513317 Msa0307550:CDS
GCGGAAAGAAGACATAGCCA+TGG 0.667622 2_4:+513723 None:intergenic
CCCGCGATAGACACCGCGTG+CGG 0.668512 2_4:+513424 None:intergenic
AAGAAGAGAGTGACGCCACG+TGG 0.671207 2_4:+513636 None:intergenic
GTATGTGACGAAATATAATG+CGG 0.675794 2_4:+513704 None:intergenic
AAGTGGGGAAGATATATCCG+AGG 0.686406 2_4:-508708 Msa0307550:CDS
GCCATTGTAACATCCTTAGG+CGG 0.688294 2_4:-513484 Msa0307550:CDS
AAATGTTGGAAAACTGATTG+CGG 0.689769 2_4:-511891 Msa0307550:CDS
GACCCGCGAGAAACATGTGG+CGG 0.697263 2_4:-513390 Msa0307550:CDS
CGGTGCCGATGTTAGCACCA+AGG 0.700325 2_4:-513297 Msa0307550:CDS
CTCCACCAACTACCGCCACG+TGG 0.700533 2_4:-513651 Msa0307550:CDS
TGGGGAAGATATATCCGAGG+AGG 0.703973 2_4:-508705 Msa0307550:CDS
AAGAGAGTGACGCCACGTGG+CGG 0.706225 2_4:+513639 None:intergenic
TGTTGAGTTTGCAACAACGT+CGG 0.713642 2_4:+513516 None:intergenic
GTCACTTGGACAGATAAGTG+GGG 0.732820 2_4:-508723 Msa0307550:CDS
GTTGACCACAAGGATTACCG+GGG 0.737939 2_4:+509332 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTATTTTTATATAAGTTAT+AGG + chr2_4:509737-509756 None:intergenic 10.0%
!! TAACTTATATAAAAATAGTT+TGG - chr2_4:509738-509757 Msa0307550:intron 10.0%
!!! ATTATTTTCATATAAGTTTT+AGG + chr2_4:509865-509884 None:intergenic 10.0%
!! ATATATGTTAATATGTATAA+TGG - chr2_4:510062-510081 Msa0307550:intron 10.0%
!!! AAAATTCACTTATAATTTTA+AGG + chr2_4:511942-511961 None:intergenic 10.0%
!!! TAAAAATTTGCTATATTTTT+AGG - chr2_4:512253-512272 Msa0307550:intron 10.0%
!!! AAAAATTTGCTATATTTTTA+GGG - chr2_4:512254-512273 Msa0307550:intron 10.0%
!! CTTTATCAAATTATTAAATA+GGG + chr2_4:512297-512316 None:intergenic 10.0%
!! TCTTTATCAAATTATTAAAT+AGG + chr2_4:512298-512317 None:intergenic 10.0%
!!! AAATATAACATTTTCTTATA+TGG - chr2_4:512321-512340 Msa0307550:intron 10.0%
!! TCATATTAAGATTAATAAGA+GGG + chr2_4:510777-510796 None:intergenic 15.0%
!! TTCATATTAAGATTAATAAG+AGG + chr2_4:510778-510797 None:intergenic 15.0%
!! AGTAAATAAGTAAAGTAATT+GGG + chr2_4:510877-510896 None:intergenic 15.0%
!! TAGTAAATAAGTAAAGTAAT+TGG + chr2_4:510878-510897 None:intergenic 15.0%
!!! TTTACTTCATTATTTTATGA+TGG - chr2_4:510967-510986 Msa0307550:intron 15.0%
!!! ATTATTTTATGATGGTTAAT+TGG - chr2_4:510975-510994 Msa0307550:intron 15.0%
!!! GTGATTTTATAATAAGTAAA+TGG - chr2_4:511347-511366 Msa0307550:intron 15.0%
!!! AAAGCTGAATATTTTTATAT+AGG - chr2_4:511498-511517 Msa0307550:CDS 15.0%
!! ACCAAAAAAAAAAAAAGAAA+TGG - chr2_4:511565-511584 Msa0307550:CDS 15.0%
!!! TCCATTTCTTTTTTTTTTTT+TGG + chr2_4:511569-511588 None:intergenic 15.0%
!! ACATTAATATGAACATAAAT+TGG + chr2_4:512046-512065 None:intergenic 15.0%
!!! AATTTTTTAACCTTTTCATT+GGG - chr2_4:512998-513017 Msa0307550:intron 15.0%
!! TTAAAATATTAAATTCATGG+AGG + chr2_4:513519-513538 None:intergenic 15.0%
!!! GCTTTAAAATATTAAATTCA+TGG + chr2_4:513522-513541 None:intergenic 15.0%
!! TTAATAACAATTAACATACC+TGG + chr2_4:508905-508924 None:intergenic 20.0%
!! TGTTGTATAATATTCAAACA+TGG - chr2_4:509608-509627 Msa0307550:intron 20.0%
!! ATTAAATTGTTTACCGAAAA+AGG - chr2_4:509838-509857 Msa0307550:intron 20.0%
!! ATTATAAAATCACAGTTGAT+GGG + chr2_4:511340-511359 None:intergenic 20.0%
!! TATTATAAAATCACAGTTGA+TGG + chr2_4:511341-511360 None:intergenic 20.0%
!! TGACTATAACTGAAATAAAA+CGG - chr2_4:511410-511429 Msa0307550:intron 20.0%
!!! TAGTTCTCAATTTTTTGAAA+TGG - chr2_4:511529-511548 Msa0307550:CDS 20.0%
!!! AAATAAGATTAGTTAGATAC+AGG - chr2_4:511604-511623 Msa0307550:CDS 20.0%
!!! AATAAGATTAGTTAGATACA+GGG - chr2_4:511605-511624 Msa0307550:CDS 20.0%
!! AAATGGAATAAAGATAATTG+TGG + chr2_4:511873-511892 None:intergenic 20.0%
!! TCTTGTTCATGATATTTAAT+AGG - chr2_4:511898-511917 Msa0307550:CDS 20.0%
!! CTTGTTCATGATATTTAATA+GGG - chr2_4:511899-511918 Msa0307550:CDS 20.0%
!!! AACTTTTTCGTTTTGTTTTT+TGG - chr2_4:512010-512029 Msa0307550:intron 20.0%
!! ATTTCTTGAACATAGTAATA+TGG + chr2_4:512169-512188 None:intergenic 20.0%
!!! AAACAAAATGAAATTTTGTG+AGG - chr2_4:512194-512213 Msa0307550:intron 20.0%
!! TTAGTCCCTAAAAAATAAAA+CGG + chr2_4:512231-512250 None:intergenic 20.0%
!!! TGTAAAATCTTTAGTGTTTT+TGG + chr2_4:512580-512599 None:intergenic 20.0%
!!! TTTTTTATTGTCTTACAACA+TGG + chr2_4:512655-512674 None:intergenic 20.0%
!!! CAATTTTTTAACCTTTTCAT+TGG - chr2_4:512997-513016 Msa0307550:intron 20.0%
!! TTTATGCTTATTTGTGAAAA+CGG - chr2_4:513100-513119 Msa0307550:intron 20.0%
!!! GAGGTTTTATCAAATATATT+TGG - chr2_4:513385-513404 Msa0307550:CDS 20.0%
!!! AATTTAATATTTTAAAGCCG+TGG - chr2_4:513524-513543 Msa0307550:CDS 20.0%
!!! ATTTAATATTTTAAAGCCGT+GGG - chr2_4:513525-513544 Msa0307550:CDS 20.0%
!! TTATTTGATCATAGTCAAAA+AGG + chr2_4:513595-513614 None:intergenic 20.0%
!!! TGCTATGTATAACTATTTTT+GGG - chr2_4:513619-513638 Msa0307550:CDS 20.0%
!! TAACCTAATCCTTATGTTTT+CGG - chr2_4:508922-508941 Msa0307550:intron 25.0%
! TAAAATAAGCCGAAAACATA+AGG + chr2_4:508934-508953 None:intergenic 25.0%
! TCCAAAAGAAATGACAATAT+AGG - chr2_4:509255-509274 Msa0307550:CDS 25.0%
!!! TCCTATATTGTCATTTCTTT+TGG + chr2_4:509259-509278 None:intergenic 25.0%
! AATCTCTAGATCTTTCTTAA+TGG + chr2_4:509486-509505 None:intergenic 25.0%
! TGTGATATTTGTATTTCCAT+AGG - chr2_4:509685-509704 Msa0307550:intron 25.0%
! AACATAAGCTCTTATCATAT+AGG + chr2_4:509807-509826 None:intergenic 25.0%
!!! ATAAGTTTTAGGTCCTTTTT+CGG + chr2_4:509854-509873 None:intergenic 25.0%
!!! TAGTTTATTGGTTTCATCTA+TGG - chr2_4:510330-510349 Msa0307550:intron 25.0%
!!! AGTTTATTGGTTTCATCTAT+GGG - chr2_4:510331-510350 Msa0307550:intron 25.0%
! TGAAAAAGTTGTTATCTTCT+TGG - chr2_4:510385-510404 Msa0307550:intron 25.0%
! TTAACCAAAACAATTCTATG+TGG - chr2_4:510710-510729 Msa0307550:intron 25.0%
! TAACCAAAACAATTCTATGT+GGG - chr2_4:510711-510730 Msa0307550:intron 25.0%
!! TGAATCTTTAGTATTAGCTT+TGG - chr2_4:510925-510944 Msa0307550:CDS 25.0%
! TGAACTCCACAATTTATTTA+AGG - chr2_4:511002-511021 Msa0307550:intron 25.0%
! GAACTCCACAATTTATTTAA+GGG - chr2_4:511003-511022 Msa0307550:intron 25.0%
! AACTCCACAATTTATTTAAG+GGG - chr2_4:511004-511023 Msa0307550:intron 25.0%
!!! TTTTTTTTTTTTGGTTACCC+AGG + chr2_4:511560-511579 None:intergenic 25.0%
!!! CTAATCTTATTTGATTTTCC+AGG + chr2_4:511596-511615 None:intergenic 25.0%
! AAATACTGCTTAATCAAATC+AGG + chr2_4:511643-511662 None:intergenic 25.0%
! TTTGATTAAGCAGTATTTAG+AGG - chr2_4:511645-511664 Msa0307550:CDS 25.0%
! TTAGTCCCTAAAAAATAAAG+CGG - chr2_4:511966-511985 Msa0307550:intron 25.0%
!!! TTTTGTTTTTTGGTCCTTAA+TGG - chr2_4:512020-512039 Msa0307550:intron 25.0%
! ATAGTAATATGGACATACAA+AGG + chr2_4:512158-512177 None:intergenic 25.0%
!!! AACATCCCGTTTTATTTTTT+AGG - chr2_4:512222-512241 Msa0307550:intron 25.0%
!!! ACATCCCGTTTTATTTTTTA+GGG - chr2_4:512223-512242 Msa0307550:intron 25.0%
! TAGTCCCTAAAAAATAAAAC+GGG + chr2_4:512230-512249 None:intergenic 25.0%
!!! ATTTGCTATATTTTTAGGGA+AGG - chr2_4:512258-512277 Msa0307550:intron 25.0%
! TCTTTATGTTGACATTAAAC+TGG - chr2_4:512610-512629 Msa0307550:intron 25.0%
! ACATGGTAGAAAATAACATT+AGG + chr2_4:512638-512657 None:intergenic 25.0%
! AATCAGGTATGATATCATAT+TGG - chr2_4:512945-512964 Msa0307550:intron 25.0%
! AAACTCAAACTAGATGTAAA+AGG - chr2_4:513073-513092 Msa0307550:intron 25.0%
! TTATGCTTATTTGTGAAAAC+GGG - chr2_4:513101-513120 Msa0307550:intron 25.0%
! GAGATTACAATCATCAATAA+AGG - chr2_4:513276-513295 Msa0307550:CDS 25.0%
!!! ATTTTTGGACAATTGATTTG+AGG - chr2_4:513314-513333 Msa0307550:CDS 25.0%
!!! TTTTTGGACAATTGATTTGA+GGG - chr2_4:513315-513334 Msa0307550:CDS 25.0%
! TATATTTGATAAAACCTCCT+CGG + chr2_4:513383-513402 None:intergenic 25.0%
! AATCTTGTAAAACTCTATCT+GGG - chr2_4:513481-513500 Msa0307550:CDS 25.0%
!!! TTTAATATTTTAAAGCCGTG+GGG - chr2_4:513526-513545 Msa0307550:CDS 25.0%
! AAAATAGTTATACATAGCAC+TGG + chr2_4:513618-513637 None:intergenic 25.0%
!! GTGCTATGTATAACTATTTT+TGG - chr2_4:513618-513637 Msa0307550:CDS 25.0%
!!! TATGTATAACTATTTTTGGG+AGG - chr2_4:513622-513641 Msa0307550:CDS 25.0%
!!! ACAAAAACTGATTGATTTGA+GGG + chr2_4:513658-513677 None:intergenic 25.0%
GTATGTGACGAAATATAATG+CGG + chr2_4:508370-508389 None:intergenic 30.0%
TATTCAACAACATGACTAGT+AGG + chr2_4:508707-508726 None:intergenic 30.0%
ACTAGTCATGTTGTTGAATA+CGG - chr2_4:508707-508726 Msa0307550:CDS 30.0%
TTGTTGAACTTCAATGTCAT+GGG - chr2_4:508816-508835 Msa0307550:CDS 30.0%
AAGCTGTTTATTCAAAAGCT+AGG - chr2_4:509079-509098 Msa0307550:intron 30.0%
! AGTTTTGCTCTGACTTTAAT+TGG - chr2_4:509195-509214 Msa0307550:CDS 30.0%
! GTTTTGCTCTGACTTTAATT+GGG - chr2_4:509196-509215 Msa0307550:CDS 30.0%
!! TGTCATTTCTTTTGGAAACT+CGG + chr2_4:509251-509270 None:intergenic 30.0%
!!! CCATTTTGATTTTCTACGAT+AGG + chr2_4:509345-509364 None:intergenic 30.0%
CCTATCGTAGAAAATCAAAA+TGG - chr2_4:509342-509361 Msa0307550:CDS 30.0%
ATCGTAGAAAATCAAAATGG+AGG - chr2_4:509345-509364 Msa0307550:CDS 30.0%
AAATCAAAATGGAGGAAACT+CGG - chr2_4:509353-509372 Msa0307550:CDS 30.0%
AAGCTATACTAGATAACCTA+TGG + chr2_4:509704-509723 None:intergenic 30.0%
TCATTTAACAAGGTCTTCTT+TGG + chr2_4:509976-509995 None:intergenic 30.0%
AACGAAGCTTTCATTTAACA+AGG + chr2_4:509986-510005 None:intergenic 30.0%
! TAATGGAGTACATTGCTATT+TGG - chr2_4:510079-510098 Msa0307550:intron 30.0%
AAATGTTGGAAAACTGATTG+CGG - chr2_4:510180-510199 Msa0307550:intron 30.0%
AGATGTCAGACTTAGTTTAT+TGG - chr2_4:510318-510337 Msa0307550:CDS 30.0%
ATAATCCCATTCAAATCTAG+AGG + chr2_4:510511-510530 None:intergenic 30.0%
TCTAGATTTGAATGGGATTA+TGG - chr2_4:510510-510529 Msa0307550:intron 30.0%
TACACCCCTTAAATAAATTG+TGG + chr2_4:511011-511030 None:intergenic 30.0%
TAGTAGATGTTTGTGTGTTT+GGG - chr2_4:511033-511052 Msa0307550:intron 30.0%
TCCATAGTTAGTAATCATCT+TGG - chr2_4:511066-511085 Msa0307550:intron 30.0%
GAAGCAAGTATCAACATTAA+CGG - chr2_4:511196-511215 Msa0307550:intron 30.0%
GATGACATTGTGGAAAAAAT+TGG - chr2_4:511262-511281 Msa0307550:CDS 30.0%
!!! TTTTTTGAAATGGAAACTCC+TGG - chr2_4:511539-511558 Msa0307550:CDS 30.0%
!!! TTTTTGAAATGGAAACTCCT+GGG - chr2_4:511540-511559 Msa0307550:CDS 30.0%
AAAAAAGAAATGGAAACTCC+TGG - chr2_4:511575-511594 Msa0307550:CDS 30.0%
TTAAAGTAGCAAAACACTGA+TGG + chr2_4:511690-511709 None:intergenic 30.0%
ATTAAGAGGATACATACATG+TGG + chr2_4:511723-511742 None:intergenic 30.0%
CATGTATGTATCCTCTTAAT+AGG - chr2_4:511723-511742 Msa0307550:intron 30.0%
!! AGGTGCTGATTTAATTATCA+TGG - chr2_4:511773-511792 Msa0307550:intron 30.0%
AAGACATCAAACTTCTTGAA+AGG - chr2_4:511826-511845 Msa0307550:intron 30.0%
!! TCATGAACAAGAGTACTAAA+TGG + chr2_4:511890-511909 None:intergenic 30.0%
TAGTCCCTAAAAAATAAAGC+GGG - chr2_4:511967-511986 Msa0307550:intron 30.0%
TGAACATAAATTGGCCATTA+AGG + chr2_4:512037-512056 None:intergenic 30.0%
CATAATAGATGGACATACAA+AGG + chr2_4:512130-512149 None:intergenic 30.0%
CAAAGGTTGAACATAATAGA+TGG + chr2_4:512141-512160 None:intergenic 30.0%
!! TTACTTTTGTAGTGACGAAA+GGG + chr2_4:512433-512452 None:intergenic 30.0%
!! TTTACTTTTGTAGTGACGAA+AGG + chr2_4:512434-512453 None:intergenic 30.0%
AAATAGAGAGATCAACTACA+TGG - chr2_4:512467-512486 Msa0307550:intron 30.0%
TTTAATCTTTCTGTAACGAC+AGG - chr2_4:512698-512717 Msa0307550:intron 30.0%
ATGATATCATACCTGATTGA+CGG + chr2_4:512943-512962 None:intergenic 30.0%
! ATTGATTCTTCCCAATGAAA+AGG + chr2_4:513011-513030 None:intergenic 30.0%
TTCATTGGGAAGAATCAATT+AGG - chr2_4:513012-513031 Msa0307550:intron 30.0%
TTTACCAAAACATAGATTCG+TGG + chr2_4:513056-513075 None:intergenic 30.0%
ATGGAAAATAGCAACATAAC+TGG - chr2_4:513127-513146 Msa0307550:intron 30.0%
AATAAAGGAAGAACTACCTA+TGG - chr2_4:513291-513310 Msa0307550:CDS 30.0%
! AAGAACTACCTATGGATTTT+TGG - chr2_4:513299-513318 Msa0307550:CDS 30.0%
TCAATTGTCCAAAAATCCAT+AGG + chr2_4:513310-513329 None:intergenic 30.0%
ATATTTGGCAAGTTCTGTAT+TGG - chr2_4:513400-513419 Msa0307550:CDS 30.0%
CAATCTTGTAAAACTCTATC+TGG - chr2_4:513480-513499 Msa0307550:CDS 30.0%
!! CACAAAAACTGATTGATTTG+AGG + chr2_4:513659-513678 None:intergenic 30.0%
! TTTGTCTAGAAGTACACTTT+CGG + chr2_4:513686-513705 None:intergenic 30.0%
GTTGTTGAACTTCAATGTCA+TGG - chr2_4:508815-508834 Msa0307550:CDS 35.0%
! CTTAGGATTTGTTTAGAAGC+TGG - chr2_4:508863-508882 Msa0307550:intron 35.0%
AAGCCGAAAACATAAGGATT+AGG + chr2_4:508928-508947 None:intergenic 35.0%
! GTGCTTTTCTTAAGGTCTTT+AGG - chr2_4:509122-509141 Msa0307550:intron 35.0%
GTGCTAACAATTCATGTGTT+AGG - chr2_4:509159-509178 Msa0307550:CDS 35.0%
AGAAGACCTGTAGATTCTAT+AGG - chr2_4:509400-509419 Msa0307550:intron 35.0%
CTTCTACCTATAGAATCTAC+AGG + chr2_4:509409-509428 None:intergenic 35.0%
AGGTAGAAGAGTAAATCAGA+TGG - chr2_4:509420-509439 Msa0307550:intron 35.0%
TAGAAGAGTAAATCAGATGG+AGG - chr2_4:509423-509442 Msa0307550:intron 35.0%
AGAAGAGTAAATCAGATGGA+GGG - chr2_4:509424-509443 Msa0307550:intron 35.0%
! CCTTATAGTTTTTGCATCCA+GGG + chr2_4:509459-509478 None:intergenic 35.0%
CCTGGATGCAAAAACTATAA+GGG - chr2_4:509457-509476 Msa0307550:intron 35.0%
ACATTTACGTGCGTATTAAG+TGG - chr2_4:510029-510048 Msa0307550:intron 35.0%
!! GATTTGCGTTTTGTTCTTTC+AGG - chr2_4:510103-510122 Msa0307550:intron 35.0%
! ACTCTTCGTGCTTTTCTAAA+TGG - chr2_4:510133-510152 Msa0307550:intron 35.0%
AAGTTGTTATCTTCTTGGAC+AGG - chr2_4:510390-510409 Msa0307550:intron 35.0%
AGTTGTTATCTTCTTGGACA+GGG - chr2_4:510391-510410 Msa0307550:intron 35.0%
TCTCAACATCTTGTGACATA+TGG + chr2_4:510546-510565 None:intergenic 35.0%
ACAAGATGTTGAGAATGCAT+TGG - chr2_4:510552-510571 Msa0307550:intron 35.0%
TGTTGAGAATGCATTGGAAA+CGG - chr2_4:510558-510577 Msa0307550:intron 35.0%
CAATCTGGATTACAGGTATA+TGG - chr2_4:510601-510620 Msa0307550:intron 35.0%
! AGACCCACATAGAATTGTTT+TGG + chr2_4:510717-510736 None:intergenic 35.0%
TTCTTGCAGATAGCAATTGT+TGG - chr2_4:510799-510818 Msa0307550:intron 35.0%
CTAGTAGATGTTTGTGTGTT+TGG - chr2_4:511032-511051 Msa0307550:intron 35.0%
GCCAAGATGATTACTAACTA+TGG + chr2_4:511070-511089 None:intergenic 35.0%
GCAATAGTTACTGAAATTGC+TGG - chr2_4:511154-511173 Msa0307550:intron 35.0%
TACAGTACAGATTACAGAGA+AGG + chr2_4:511297-511316 None:intergenic 35.0%
!! AAGCAGTATTTAGAGGTATC+TGG - chr2_4:511652-511671 Msa0307550:CDS 35.0%
TACATACATGTGGAGCAATA+TGG + chr2_4:511713-511732 None:intergenic 35.0%
TAATTGTGGCAAAACCTTAG+CGG + chr2_4:511859-511878 None:intergenic 35.0%
AGTCCCTAAAAAATAAAGCG+GGG - chr2_4:511968-511987 Msa0307550:intron 35.0%
!!! ATCCCCCGCTTTATTTTTTA+GGG + chr2_4:511974-511993 None:intergenic 35.0%
CAAAACGAAAAAGTTATGCG+AGG + chr2_4:512005-512024 None:intergenic 35.0%
CAAAGGTTGAACAAAGTAGA+TGG + chr2_4:512113-512132 None:intergenic 35.0%
AATCTATCTTGTTGACCACA+AGG + chr2_4:512752-512771 None:intergenic 35.0%
! TAAGTCTTGTAATCCTTGAC+TGG + chr2_4:512859-512878 None:intergenic 35.0%
AAGGATTACAAGACTTAGAG+AGG - chr2_4:512862-512881 Msa0307550:intron 35.0%
AGGATTACAAGACTTAGAGA+GGG - chr2_4:512863-512882 Msa0307550:intron 35.0%
AAACATAGATTCGTGGTAAC+AGG + chr2_4:513049-513068 None:intergenic 35.0%
! GTTACCACGAATCTATGTTT+TGG - chr2_4:513049-513068 Msa0307550:intron 35.0%
TATTTGTGAAAACGGGTAGA+TGG - chr2_4:513108-513127 Msa0307550:intron 35.0%
TGTCAAACAGATCAACACTT+GGG + chr2_4:513201-513220 None:intergenic 35.0%
! GACAATGTGAACAACTTGTT+CGG - chr2_4:513236-513255 Msa0307550:CDS 35.0%
TACAATAAAACTGATCCCCA+CGG + chr2_4:513544-513563 None:intergenic 35.0%
TCATAGTCAAAAAGGTCATG+TGG + chr2_4:513587-513606 None:intergenic 35.0%
!! AAACTGATTGATTTGAGGGT+GGG + chr2_4:513654-513673 None:intergenic 35.0%
!! AAAACTGATTGATTTGAGGG+TGG + chr2_4:513655-513674 None:intergenic 35.0%
CAACAAGAGCAGATAGCAAA+AGG - chr2_4:508308-508327 Msa0307550:three_prime_UTR 40.0%
!!! GAAGAAACGGTTGTTGGTTT+TGG + chr2_4:508399-508418 None:intergenic 40.0%
!! TAGTTGGTGGAGTGAAGAAA+CGG + chr2_4:508412-508431 None:intergenic 40.0%
GAGTAAACGTTCGTCTTTGT+TGG + chr2_4:508507-508526 None:intergenic 40.0%
TGTTGAGTTTGCAACAACGT+CGG + chr2_4:508558-508577 None:intergenic 40.0%
!!! TGTTGAATACGGTGTCGTTT+TGG - chr2_4:508718-508737 Msa0307550:CDS 40.0%
TTTGGATTCCGATGGAAATG+TGG - chr2_4:508736-508755 Msa0307550:CDS 40.0%
GCTAGGATTAGAAATGACCT+CGG - chr2_4:509096-509115 Msa0307550:intron 40.0%
ACACATGAATTGTTAGCACC+TGG + chr2_4:509158-509177 None:intergenic 40.0%
!! TCTTTTGGAAACTCGGTATC+TGG + chr2_4:509244-509263 None:intergenic 40.0%
ACGACAACATTAGAGAGAGT+TGG - chr2_4:509312-509331 Msa0307550:CDS 40.0%
CGACAACATTAGAGAGAGTT+GGG - chr2_4:509313-509332 Msa0307550:CDS 40.0%
GACAACATTAGAGAGAGTTG+GGG - chr2_4:509314-509333 Msa0307550:CDS 40.0%
CCCTGGATGCAAAAACTATA+AGG - chr2_4:509456-509475 Msa0307550:intron 40.0%
! CCCTTATAGTTTTTGCATCC+AGG + chr2_4:509460-509479 None:intergenic 40.0%
! TGCTTTTCTAAATGGTCGTC+TGG - chr2_4:510141-510160 Msa0307550:intron 40.0%
CTATCTCAGGCTGAAAATGT+TGG - chr2_4:510166-510185 Msa0307550:intron 40.0%
AAAATTGAGCTAGACATGCC+TGG + chr2_4:510246-510265 None:intergenic 40.0%
TTGGTTTCATCTATGGGTGT+TGG - chr2_4:510337-510356 Msa0307550:intron 40.0%
ATGCCACCTCTAGATTTGAA+TGG - chr2_4:510502-510521 Msa0307550:intron 40.0%
TGCCACCTCTAGATTTGAAT+GGG - chr2_4:510503-510522 Msa0307550:intron 40.0%
ATCCCATTCAAATCTAGAGG+TGG + chr2_4:510508-510527 None:intergenic 40.0%
TATGACAAGCTTCTGCAATC+TGG - chr2_4:510586-510605 Msa0307550:intron 40.0%
ATTTGTCATACAGTGCCCTT+AGG - chr2_4:510660-510679 Msa0307550:intron 40.0%
CTACACCTCTTACAACCTAA+GGG + chr2_4:510678-510697 None:intergenic 40.0%
TCTACACCTCTTACAACCTA+AGG + chr2_4:510679-510698 None:intergenic 40.0%
!! TTGACTTGCCAACATTAGGA+CGG + chr2_4:510825-510844 None:intergenic 40.0%
AGTCAAGCCTTCTTAATGCA+TGG - chr2_4:510839-510858 Msa0307550:CDS 40.0%
CTTTGCTCCATGCATTAAGA+AGG + chr2_4:510849-510868 None:intergenic 40.0%
ATGTTTGTGTGTTTGGGCAA+AGG - chr2_4:511039-511058 Msa0307550:intron 40.0%
TGTTTGTGTGTTTGGGCAAA+GGG - chr2_4:511040-511059 Msa0307550:intron 40.0%
CAGTATCAAGAAGGGTTATG+GGG + chr2_4:511225-511244 None:intergenic 40.0%
GCAGTATCAAGAAGGGTTAT+GGG + chr2_4:511226-511245 None:intergenic 40.0%
TGCAGTATCAAGAAGGGTTA+TGG + chr2_4:511227-511246 None:intergenic 40.0%
ATAACCCTTCTTGATACTGC+AGG - chr2_4:511226-511245 Msa0307550:CDS 40.0%
TAATCTGTACTGTATGCTGC+AGG - chr2_4:511303-511322 Msa0307550:intron 40.0%
ATCGCTCTACACCTATTAAG+AGG + chr2_4:511737-511756 None:intergenic 40.0%
TGAAAGGATTCAATCCGCTA+AGG - chr2_4:511842-511861 Msa0307550:intron 40.0%
GTCCCTAAAAAATAAAGCGG+GGG - chr2_4:511969-511988 Msa0307550:intron 40.0%
!!! CATCCCCCGCTTTATTTTTT+AGG + chr2_4:511975-511994 None:intergenic 40.0%
TATGGAAAGAGACATTCGAG+AGG - chr2_4:512339-512358 Msa0307550:intron 40.0%
TCAAGATAATGCTGCCTAGT+AGG - chr2_4:512372-512391 Msa0307550:intron 40.0%
ATTGAACTAGAAGAGTGGAG+TGG - chr2_4:512399-512418 Msa0307550:intron 40.0%
! GCATCTAAGTGGCATTTTTG+AGG + chr2_4:512510-512529 None:intergenic 40.0%
GTGTAACTCTAGCATCTAAG+TGG + chr2_4:512521-512540 None:intergenic 40.0%
!!! GTTTTTGGTGCTTATGCTAC+AGG + chr2_4:512565-512584 None:intergenic 40.0%
TTGTTGACCACAAGGATTAC+CGG + chr2_4:512744-512763 None:intergenic 40.0%
AGTCTTAGAGATTGTGGGTA+TGG - chr2_4:512887-512906 Msa0307550:intron 40.0%
TTAGAGATTGTGGGTATGGA+TGG - chr2_4:512891-512910 Msa0307550:intron 40.0%
GGAAGAATCAATTAGGCAGT+GGG - chr2_4:513019-513038 Msa0307550:intron 40.0%
GTCAAACAGATCAACACTTG+GGG + chr2_4:513200-513219 None:intergenic 40.0%
GTGTCAAACAGATCAACACT+TGG + chr2_4:513202-513221 None:intergenic 40.0%
TAATCTCACAAGTGCTTCCT+TGG + chr2_4:513263-513282 None:intergenic 40.0%
! TTGTCACTTGGACAGATAAG+TGG - chr2_4:513346-513365 Msa0307550:CDS 40.0%
! TGTCACTTGGACAGATAAGT+GGG - chr2_4:513347-513366 Msa0307550:CDS 40.0%
AAACCACTTAGCACCAAGTA+GGG + chr2_4:513447-513466 None:intergenic 40.0%
AAAACCACTTAGCACCAAGT+AGG + chr2_4:513448-513467 None:intergenic 40.0%
TGGAGTGAAGAAACGGTTGT+TGG + chr2_4:508405-508424 None:intergenic 45.0%
GCAGCCATTGTAACATCCTT+AGG - chr2_4:508584-508603 Msa0307550:three_prime_UTR 45.0%
GCCATTGTAACATCCTTAGG+CGG - chr2_4:508587-508606 Msa0307550:three_prime_UTR 45.0%
ACCGCCTAAGGATGTTACAA+TGG + chr2_4:508591-508610 None:intergenic 45.0%
CTCATCGACCACATTTCCAT+CGG + chr2_4:508747-508766 None:intergenic 45.0%
TGTGGTCGATGAGGTTATAG+CGG - chr2_4:508754-508773 Msa0307550:CDS 45.0%
!! TACGACCTTGGTGCTAACAT+CGG + chr2_4:508782-508801 None:intergenic 45.0%
TCTTCACGAGTATACGACCT+TGG + chr2_4:508794-508813 None:intergenic 45.0%
! CTTAAGAAAAGCACACTCCG+AGG + chr2_4:509116-509135 None:intergenic 45.0%
! CTCGGAGTGTGCTTTTCTTA+AGG - chr2_4:509114-509133 Msa0307550:intron 45.0%
! TCTTTAGGTTCGAATCCTCC+AGG - chr2_4:509137-509156 Msa0307550:intron 45.0%
CATGAATTGTTAGCACCTGG+AGG + chr2_4:509155-509174 None:intergenic 45.0%
TTTAATTGGGCCCCCATTAG+TGG - chr2_4:509209-509228 Msa0307550:CDS 45.0%
TGGTCCAATCGTCCACTAAT+GGG + chr2_4:509224-509243 None:intergenic 45.0%
TGTTATCTTCTTGGACAGGG+TGG - chr2_4:510394-510413 Msa0307550:intron 45.0%
GCTTCTGCAATCTGGATTAC+AGG - chr2_4:510594-510613 Msa0307550:intron 45.0%
ATTGTTGGCCGTCCTAATGT+TGG - chr2_4:510814-510833 Msa0307550:CDS 45.0%
!! AGGCTTGACTTGCCAACATT+AGG + chr2_4:510829-510848 None:intergenic 45.0%
GATGCCTGCAGTATCAAGAA+GGG + chr2_4:511233-511252 None:intergenic 45.0%
TGATGCCTGCAGTATCAAGA+AGG + chr2_4:511234-511253 None:intergenic 45.0%
TTCTTGATACTGCAGGCATC+AGG - chr2_4:511233-511252 Msa0307550:CDS 45.0%
TCTTGATACTGCAGGCATCA+GGG - chr2_4:511234-511253 Msa0307550:CDS 45.0%
! CAAAACACTGATGGACATGC+AGG + chr2_4:511681-511700 None:intergenic 45.0%
GAGACATTCGAGAGGAATGT+TGG - chr2_4:512347-512366 Msa0307550:intron 45.0%
CTAGTTCAATGCTGCCTACT+AGG + chr2_4:512389-512408 None:intergenic 45.0%
! GCAGCATTGAACTAGAAGAG+TGG - chr2_4:512394-512413 Msa0307550:intron 45.0%
CTGTAACGACAGGAATCAAC+TGG - chr2_4:512708-512727 Msa0307550:intron 45.0%
ATCAACTGGATCTTCAACCC+CGG - chr2_4:512722-512741 Msa0307550:intron 45.0%
TGTTGACCACAAGGATTACC+GGG + chr2_4:512743-512762 None:intergenic 45.0%
ACATGTGCTGTAACCAGTCA+AGG - chr2_4:512843-512862 Msa0307550:intron 45.0%
AGGGCAGTCTTAGAGATTGT+GGG - chr2_4:512882-512901 Msa0307550:intron 45.0%
GGGAAGAATCAATTAGGCAG+TGG - chr2_4:513018-513037 Msa0307550:intron 45.0%
ATCAACACTTGGGGCATGTT+TGG + chr2_4:513191-513210 None:intergenic 45.0%
! TGAACAACTTGTTCGGACCA+AGG - chr2_4:513243-513262 Msa0307550:CDS 45.0%
GTCACTTGGACAGATAAGTG+GGG - chr2_4:513348-513367 Msa0307550:CDS 45.0%
AAGTGGGGAAGATATATCCG+AGG - chr2_4:513363-513382 Msa0307550:CDS 45.0%
AATACAGTTCCCTCCCTACT+TGG - chr2_4:513431-513450 Msa0307550:CDS 45.0%
! ATTCATGGAGGTACGTGTAC+TGG + chr2_4:513507-513526 None:intergenic 45.0%
AAAAGGCAGAACCAGAGCGA+TGG - chr2_4:508325-508344 Msa0307550:three_prime_UTR 50.0%
GCGGAAAGAAGACATAGCCA+TGG + chr2_4:508351-508370 None:intergenic 50.0%
CGAAAGACGAACGATTCCGA+CGG + chr2_4:508624-508643 None:intergenic 50.0%
CGTCGGAATCGTTCGTCTTT+CGG - chr2_4:508622-508641 Msa0307550:three_prime_UTR 50.0%
GTCGGAATCGTTCGTCTTTC+GGG - chr2_4:508623-508642 Msa0307550:three_prime_UTR 50.0%
!!! GGTGTCGTTTTGGATTCCGA+TGG - chr2_4:508728-508747 Msa0307550:CDS 50.0%
CGATGGAAATGTGGTCGATG+AGG - chr2_4:508745-508764 Msa0307550:CDS 50.0%
TGTGTTTGCGTCGTGTGCTT+AGG - chr2_4:508846-508865 Msa0307550:intron 50.0%
GTCCAATCGTCCACTAATGG+GGG + chr2_4:509222-509241 None:intergenic 50.0%
GGTCCAATCGTCCACTAATG+GGG + chr2_4:509223-509242 None:intergenic 50.0%
CTGGTCCAATCGTCCACTAA+TGG + chr2_4:509225-509244 None:intergenic 50.0%
ATGGAGGGTAGTCAAATCCC+TGG - chr2_4:509439-509458 Msa0307550:intron 50.0%
CTTATCCCACGAAGTGGAGT+CGG + chr2_4:509578-509597 None:intergenic 50.0%
! CCAAGTCTTATCCCACGAAG+TGG + chr2_4:509584-509603 None:intergenic 50.0%
CCACTTCGTGGGATAAGACT+TGG - chr2_4:509581-509600 Msa0307550:intron 50.0%
TGGTCGTCTGGATCTATCTC+AGG - chr2_4:510153-510172 Msa0307550:intron 50.0%
ACTGATTGCGGCCAAATCTG+TGG - chr2_4:510192-510211 Msa0307550:intron 50.0%
ATCAGCAGCAGCCACAGATT+TGG + chr2_4:510206-510225 None:intergenic 50.0%
! CAGTGCCCTTAGGTTGTAAG+AGG - chr2_4:510670-510689 Msa0307550:intron 50.0%
CAGGGACACTGATGACATTG+TGG - chr2_4:511252-511271 Msa0307550:CDS 50.0%
! ATGGCTGTGAGTGCTGTTGA+AGG - chr2_4:511792-511811 Msa0307550:intron 50.0%
! TGGCTGTGAGTGCTGTTGAA+GGG - chr2_4:511793-511812 Msa0307550:intron 50.0%
CTAGAAGAGTGGAGTGGACA+TGG - chr2_4:512405-512424 Msa0307550:intron 50.0%
TTCAACCCCGGTAATCCTTG+TGG - chr2_4:512734-512753 Msa0307550:intron 50.0%
GTTGACCACAAGGATTACCG+GGG + chr2_4:512742-512761 None:intergenic 50.0%
! AGCCTTGTGCAGAGACTGAA+TGG - chr2_4:512775-512794 Msa0307550:intron 50.0%
GCCTTGTGCAGAGACTGAAT+GGG - chr2_4:512776-512795 Msa0307550:intron 50.0%
TCCCATTCAGTCTCTGCACA+AGG + chr2_4:512780-512799 None:intergenic 50.0%
GCAGAGACTGAATGGGACAA+AGG - chr2_4:512783-512802 Msa0307550:intron 50.0%
GAGGGCAGTCTTAGAGATTG+TGG - chr2_4:512881-512900 Msa0307550:intron 50.0%
GTATGGATGGCATTGCTGCT+GGG - chr2_4:512904-512923 Msa0307550:intron 50.0%
TATGGATGGCATTGCTGCTG+GGG - chr2_4:512905-512924 Msa0307550:intron 50.0%
ACACTTGGGGCATGTTTGGT+TGG + chr2_4:513187-513206 None:intergenic 50.0%
AGGGATGCTGCATTGTCACT+TGG - chr2_4:513334-513353 Msa0307550:CDS 50.0%
TGGGGAAGATATATCCGAGG+AGG - chr2_4:513366-513385 Msa0307550:CDS 50.0%
CACTTAGCACCAAGTAGGGA+GGG + chr2_4:513443-513462 None:intergenic 50.0%
AAGAAGAGAGTGACGCCACG+TGG + chr2_4:508438-508457 None:intergenic 55.0%
AAGACGAACGATTCCGACGG+CGG + chr2_4:508621-508640 None:intergenic 55.0%
GGAGCAACACTTGCTCAACC+AGG - chr2_4:508884-508903 Msa0307550:intron 55.0%
! ATGTAGCCGACTCCACTTCG+TGG - chr2_4:509569-509588 Msa0307550:intron 55.0%
! TGTAGCCGACTCCACTTCGT+GGG - chr2_4:509570-509589 Msa0307550:intron 55.0%
! TGCAGCACTGGAAGGAATCC+AGG - chr2_4:510225-510244 Msa0307550:intron 55.0%
! CGATCTGAAGCTGCTGCTAG+AGG - chr2_4:511753-511772 Msa0307550:intron 55.0%
! CTGTGAGTGCTGTTGAAGGG+TGG - chr2_4:511796-511815 Msa0307550:intron 55.0%
GGTATGGATGGCATTGCTGC+TGG - chr2_4:512903-512922 Msa0307550:intron 55.0%
ATGGATGGCATTGCTGCTGG+GGG - chr2_4:512906-512925 Msa0307550:intron 55.0%
TCGCAGATGGACCGTCAATC+AGG - chr2_4:512929-512948 Msa0307550:intron 55.0%
CCACTTAGCACCAAGTAGGG+AGG + chr2_4:513444-513463 None:intergenic 55.0%
!! CCTCCCTACTTGGTGCTAAG+TGG - chr2_4:513441-513460 Msa0307550:CDS 55.0%
CAGAACCAGAGCGATGGCCA+TGG - chr2_4:508331-508350 Msa0307550:three_prime_UTR 60.0%
CATAGCCATGGCCATCGCTC+TGG + chr2_4:508339-508358 None:intergenic 60.0%
AAGAGAGTGACGCCACGTGG+CGG + chr2_4:508435-508454 None:intergenic 60.0%
TCCGACCCGCGAGAAACATG+TGG - chr2_4:508678-508697 Msa0307550:CDS 60.0%
GCCACATGTTTCTCGCGGGT+CGG + chr2_4:508682-508701 None:intergenic 60.0%
GACCCGCGAGAAACATGTGG+CGG - chr2_4:508681-508700 Msa0307550:CDS 60.0%
AGGCCGCCACATGTTTCTCG+CGG + chr2_4:508687-508706 None:intergenic 60.0%
!! CGGTGCCGATGTTAGCACCA+AGG - chr2_4:508774-508793 Msa0307550:CDS 60.0%
! GGCCCCCATTAGTGGACGAT+TGG - chr2_4:509217-509236 Msa0307550:CDS 60.0%
! GCTGCTGATGCAGCACTGGA+AGG - chr2_4:510217-510236 Msa0307550:intron 60.0%
CTCCACCAACTACCGCCACG+TGG - chr2_4:508420-508439 Msa0307550:three_prime_UTR 65.0%
TGACGCCACGTGGCGGTAGT+TGG + chr2_4:508428-508447 None:intergenic 65.0%
AACGATTCCGACGGCGGCAG+GGG + chr2_4:508615-508634 None:intergenic 65.0%
GAACGATTCCGACGGCGGCA+GGG + chr2_4:508616-508635 None:intergenic 65.0%
! TCGTCTTTCGGGTCCGCACG+CGG - chr2_4:508634-508653 Msa0307550:three_prime_UTR 65.0%
TCCGCACGCGGTGTCTATCG+CGG - chr2_4:508646-508665 Msa0307550:exon 65.0%
GGCCGCCACATGTTTCTCGC+GGG + chr2_4:508686-508705 None:intergenic 65.0%
GGCTGCTGCTGATGCAGCAC+TGG - chr2_4:510213-510232 Msa0307550:intron 65.0%
TTGCTGCTGGGGGTCGCAGA+TGG - chr2_4:512916-512935 Msa0307550:intron 65.0%
CGCCACGTGGCGGTAGTTGG+TGG + chr2_4:508425-508444 None:intergenic 70.0%
ACGATTCCGACGGCGGCAGG+GGG + chr2_4:508614-508633 None:intergenic 70.0%
CGAACGATTCCGACGGCGGC+AGG + chr2_4:508617-508636 None:intergenic 70.0%
CCCGCGATAGACACCGCGTG+CGG + chr2_4:508650-508669 None:intergenic 70.0%
CCGCACGCGGTGTCTATCGC+GGG - chr2_4:508647-508666 Msa0307550:exon 70.0%
! GGCGGCAGGGGGACCGCCTA+AGG + chr2_4:508603-508622 None:intergenic 80.0%
! GGCGGTCCCCCTGCCGCCGT+CGG - chr2_4:508605-508624 Msa0307550:three_prime_UTR 85.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 508302 513791 508302 ID=Msa0307550;Name=Msa0307550
chr2_4 mRNA 508302 513791 508302 ID=Msa0307550-mRNA-1;Parent=Msa0307550;Name=Msa0307550-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.42|0.62|1|0.57|0.62|8|362|505
chr2_4 exon 508302 508858 508302 ID=Msa0307550-mRNA-1:exon:275;Parent=Msa0307550-mRNA-1
chr2_4 exon 509143 509373 509143 ID=Msa0307550-mRNA-1:exon:274;Parent=Msa0307550-mRNA-1
chr2_4 exon 510296 510342 510296 ID=Msa0307550-mRNA-1:exon:273;Parent=Msa0307550-mRNA-1
chr2_4 exon 510810 510948 510810 ID=Msa0307550-mRNA-1:exon:272;Parent=Msa0307550-mRNA-1
chr2_4 exon 511226 511285 511226 ID=Msa0307550-mRNA-1:exon:271;Parent=Msa0307550-mRNA-1
chr2_4 exon 511478 511681 511478 ID=Msa0307550-mRNA-1:exon:270;Parent=Msa0307550-mRNA-1
chr2_4 exon 511883 511968 511883 ID=Msa0307550-mRNA-1:exon:269;Parent=Msa0307550-mRNA-1
chr2_4 exon 513236 513791 513236 ID=Msa0307550-mRNA-1:exon:268;Parent=Msa0307550-mRNA-1
chr2_4 CDS 513236 513791 513236 ID=Msa0307550-mRNA-1:cds;Parent=Msa0307550-mRNA-1
chr2_4 CDS 511883 511968 511883 ID=Msa0307550-mRNA-1:cds;Parent=Msa0307550-mRNA-1
chr2_4 CDS 511478 511681 511478 ID=Msa0307550-mRNA-1:cds;Parent=Msa0307550-mRNA-1
chr2_4 CDS 511226 511285 511226 ID=Msa0307550-mRNA-1:cds;Parent=Msa0307550-mRNA-1
chr2_4 CDS 510810 510948 510810 ID=Msa0307550-mRNA-1:cds;Parent=Msa0307550-mRNA-1
chr2_4 CDS 510296 510342 510296 ID=Msa0307550-mRNA-1:cds;Parent=Msa0307550-mRNA-1
chr2_4 CDS 509143 509373 509143 ID=Msa0307550-mRNA-1:cds;Parent=Msa0307550-mRNA-1
chr2_4 CDS 508664 508858 508664 ID=Msa0307550-mRNA-1:cds;Parent=Msa0307550-mRNA-1
chr2_4 three_prime_UTR 508302 508663 508302 ID=Msa0307550-mRNA-1:three_prime_utr;Parent=Msa0307550-mRNA-1
Gene Sequence

>Msa0307550

ACACATCAACAAGAGCAGATAGCAAAAGGCAGAACCAGAGCGATGGCCATGGCTATGTCTTCTTTCCGCATTATATTTCGTCACATACTACACACCAAAACCAACAACCGTTTCTTCACTCCACCAACTACCGCCACGTGGCGTCACTCTCTTCTTTCTTCTCGCATTTCATCTTCAACTAATTACAGTTACAACGTTATCACCAACAAAGACGAACGTTTACTCGAACAAATCGACAACGAAAACAACAACACCGACGTTGTTGCAAACTCAACAACAATTGCAGCCATTGTAACATCCTTAGGCGGTCCCCCTGCCGCCGTCGGAATCGTTCGTCTTTCGGGTCCGCACGCGGTGTCTATCGCGGGTCGAGTTTTCCGACCCGCGAGAAACATGTGGCGGCCTACTAGTCATGTTGTTGAATACGGTGTCGTTTTGGATTCCGATGGAAATGTGGTCGATGAGGTTATAGCGGTGCCGATGTTAGCACCAAGGTCGTATACTCGTGAAGATGTTGTTGAACTTCAATGTCATGGGAATGAAGTGTGTTTGCGTCGAGAGTTTACTCTTCGTGCTTTTCTAAATGGTCGTCTGGATCTATCTCAGGCTGAAAATGTTGGAAAACTGATTGCGGCCAAATCTGGTGGTTTCTCTTCTCTTGTCAGATCATTGAGAAATCAGTGCATTGACTTGCTCACTGAGATTGAAGCTCGTTTAGATTTTGAAGATGAGATGCCACCTCTAGATTTGAATGGGATTATGGATAAAATACACCATATGTCACAAGATGTTGAGAATGCATTGGAAACGGCAAATTATGACAAGCTTCTGCAATCTGGATTACAGATAGCAATTGTTGGCCGTCCTAATGTTGGCAAGTCAAGCCTTCTTAATGCATGGAGCAAAAGTGAGAGAGCAATAGTTACTGAAATTGCTGGAACAACTCGAGATGTGATTGAAGCAAGTATCAACATTAACGGCATCCCCATAACCCTTCTTGATACTGCAGGCATCAGGGACACTGATGACATTGTGGAAAAAATTGAGCGATCTGAAGCTGCTGCTAGAGGTGCTGATTTAATTATCATGGCTGAATCAACTGGATCTTCAACCCCGGTAATCCTTGTGGTCAACAAGATAGATTGTAAGCCTTGTGCAGAGACTGAATGGGACAAAGGAATGCACAGTCACAAAATTTTCAGCAAACAAGTGTTTACATGTGCTGTAACCAGTCAAGGATTACAAGACTTAGAGAGGGCAGTCTTAGAGATTGTGGGTATGGATGGCATTGCTGCTGGGGGTCGCAGATGGACCGTCAATCAGAGACAATGTGAACAACTTGTTCGGACCAAGGAAGCACTTGTGAGATTACAATCATCAATAAAGGAAGAACTACCTATGGATTTTTGGACAATTGATTTGAGGGATGCTGCATTGTCACTTGGACAGATAAGTGGGGAAGATATATCCGAGGAGGTTTTATCAAATATATTTGGCAAGTTCTGTATTGGTAAATAA

Protein sequence

>Msa0307550

THQQEQIAKGRTRAMAMAMSSFRIIFRHILHTKTNNRFFTPPTTATWRHSLLSSRISSSTNYSYNVITNKDERLLEQIDNENNNTDVVANSTTIAAIVTSLGGPPAAVGIVRLSGPHAVSIAGRVFRPARNMWRPTSHVVEYGVVLDSDGNVVDEVIAVPMLAPRSYTREDVVELQCHGNEVCLRREFTLRAFLNGRLDLSQAENVGKLIAAKSGGFSSLVRSLRNQCIDLLTEIEARLDFEDEMPPLDLNGIMDKIHHMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASININGIPITLLDTAGIRDTDDIVEKIERSEAAARGADLIIMAESTGSSTPVILVVNKIDCKPCAETEWDKGMHSHKIFSKQVFTCAVTSQGLQDLERAVLEIVGMDGIAAGGRRWTVNQRQCEQLVRTKEALVRLQSSIKEELPMDFWTIDLRDAALSLGQISGEDISEEVLSNIFGKFCIGK*