Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0307550 | XP_013460842.1 | 88.214 | 543 | 12 | 4 | 15 | 505 | 1 | 543 | 0.0 | 953 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0307550 | sp|Q8KPU2|MNME_SYNE7 | 45.969 | 459 | 198 | 10 | 93 | 505 | 8 | 462 | 1.82e-125 | 377 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0037820 | Msa0307550 | 0.800008 | 1.762591e-48 | -8.615850e-47 |
Msa0084680 | Msa0307550 | 0.812953 | 3.270094e-51 | -8.615850e-47 |
Msa0140290 | Msa0307550 | 0.812214 | 4.745571e-51 | -8.615850e-47 |
Msa0171920 | Msa0307550 | 0.826894 | 2.111845e-54 | -8.615850e-47 |
Msa0178940 | Msa0307550 | 0.816671 | 4.902875e-52 | -8.615850e-47 |
Msa0242290 | Msa0307550 | 0.826667 | 2.391866e-54 | -8.615850e-47 |
Msa0265580 | Msa0307550 | 0.811610 | 6.422230e-51 | -8.615850e-47 |
Msa0307550 | Msa0380650 | 0.808449 | 3.080086e-50 | -8.615850e-47 |
Msa0307550 | Msa0430290 | 0.806803 | 6.888278e-50 | -8.615850e-47 |
Msa0307550 | Msa0432720 | 0.807205 | 5.663296e-50 | -8.615850e-47 |
Msa0307550 | Msa0525270 | 0.803934 | 2.750091e-49 | -8.615850e-47 |
Msa0307550 | Msa0525280 | 0.802899 | 4.505761e-49 | -8.615850e-47 |
Msa0307550 | Msa0583740 | 0.802589 | 5.223153e-49 | -8.615850e-47 |
Msa0307550 | Msa1165810 | 0.800719 | 1.263309e-48 | -8.615850e-47 |
Msa0307550 | Msa1177240 | 0.805588 | 1.241773e-49 | -8.615850e-47 |
Msa0307550 | Msa1317030 | 0.803166 | 3.969149e-49 | -8.615850e-47 |
Msa0307550 | Msa1354090 | 0.808564 | 2.911384e-50 | -8.615850e-47 |
Msa0307550 | Msa1394900 | 0.807459 | 5.002387e-50 | -8.615850e-47 |
Msa0307550 | Msa1434660 | 0.806445 | 8.196339e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0307550 | MtrunA17_Chr3g0115501 | 88.214 | 543 | 12 | 4 | 15 | 505 | 1 | 543 | 0.0 | 953 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0307550 | AT1G78010.1 | 62.333 | 523 | 132 | 9 | 44 | 505 | 42 | 560 | 0.0 | 615 |
Msa0307550 | AT3G12080.1 | 48.611 | 72 | 36 | 1 | 283 | 353 | 371 | 442 | 3.06e-11 | 66.2 |
Msa0307550 | AT3G12080.2 | 48.611 | 72 | 36 | 1 | 283 | 353 | 371 | 442 | 3.24e-11 | 66.2 |
Find 136 sgRNAs with CRISPR-Local
Find 363 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAATCTTGTAAAACTCTATC+TGG | 0.183603 | 2_4:-508591 | Msa0307550:three_prime_UTR |
GTCGGAATCGTTCGTCTTTC+GGG | 0.204168 | 2_4:-513448 | Msa0307550:CDS |
TCTAGATTTGAATGGGATTA+TGG | 0.220713 | 2_4:-511561 | Msa0307550:CDS |
GGTATGGATGGCATTGCTGC+TGG | 0.224502 | 2_4:-509168 | Msa0307550:CDS |
CGTCGGAATCGTTCGTCTTT+CGG | 0.229533 | 2_4:-513449 | Msa0307550:CDS |
GCTTCTGCAATCTGGATTAC+AGG | 0.317719 | 2_4:-511477 | Msa0307550:intron |
GCTTTAAAATATTAAATTCA+TGG | 0.318731 | 2_4:+508552 | None:intergenic |
GTATGGATGGCATTGCTGCT+GGG | 0.332288 | 2_4:-509167 | Msa0307550:CDS |
TATGACAAGCTTCTGCAATC+TGG | 0.337068 | 2_4:-511485 | Msa0307550:CDS |
TGCAGTATCAAGAAGGGTTA+TGG | 0.339601 | 2_4:+510847 | None:intergenic |
GAAGAAACGGTTGTTGGTTT+TGG | 0.343381 | 2_4:+513675 | None:intergenic |
GAGTAAACGTTCGTCTTTGT+TGG | 0.361695 | 2_4:+513567 | None:intergenic |
TTGTTGACCACAAGGATTAC+CGG | 0.372060 | 2_4:+509330 | None:intergenic |
TTCTTGATACTGCAGGCATC+AGG | 0.393317 | 2_4:-510838 | Msa0307550:CDS |
GAGATTACAATCATCAATAA+AGG | 0.397427 | 2_4:-508795 | Msa0307550:CDS |
GCAATAGTTACTGAAATTGC+TGG | 0.402773 | 2_4:-510917 | Msa0307550:CDS |
ATATTTGGCAAGTTCTGTAT+TGG | 0.403495 | 2_4:-508671 | Msa0307550:CDS |
ATCAGCAGCAGCCACAGATT+TGG | 0.403518 | 2_4:+511868 | None:intergenic |
TGTTGAATACGGTGTCGTTT+TGG | 0.405449 | 2_4:-513353 | Msa0307550:CDS |
GCAGTATCAAGAAGGGTTAT+GGG | 0.421712 | 2_4:+510848 | None:intergenic |
TTATTTGATCATAGTCAAAA+AGG | 0.422549 | 2_4:+508479 | None:intergenic |
GAGGGCAGTCTTAGAGATTG+TGG | 0.422797 | 2_4:-509190 | Msa0307550:CDS |
CTGTAACGACAGGAATCAAC+TGG | 0.423468 | 2_4:-509363 | Msa0307550:intron |
AGGCTTGACTTGCCAACATT+AGG | 0.424454 | 2_4:+511245 | None:intergenic |
GAAGCAAGTATCAACATTAA+CGG | 0.429830 | 2_4:-510875 | Msa0307550:CDS |
CGAACGATTCCGACGGCGGC+AGG | 0.431999 | 2_4:+513457 | None:intergenic |
GCAGCCATTGTAACATCCTT+AGG | 0.432367 | 2_4:-513487 | Msa0307550:CDS |
TAATCTCACAAGTGCTTCCT+TGG | 0.434972 | 2_4:+508811 | None:intergenic |
TTCTTGCAGATAGCAATTGT+TGG | 0.442984 | 2_4:-511272 | Msa0307550:intron |
TATGGATGGCATTGCTGCTG+GGG | 0.443424 | 2_4:-509166 | Msa0307550:CDS |
CTTTGCTCCATGCATTAAGA+AGG | 0.448231 | 2_4:+511225 | None:intergenic |
TCTCAACATCTTGTGACATA+TGG | 0.450538 | 2_4:+511528 | None:intergenic |
CCTCCCTACTTGGTGCTAAG+TGG | 0.454615 | 2_4:-508630 | Msa0307550:three_prime_UTR |
TCGCAGATGGACCGTCAATC+AGG | 0.455562 | 2_4:-509142 | Msa0307550:intron |
CGCCACGTGGCGGTAGTTGG+TGG | 0.456681 | 2_4:+513649 | None:intergenic |
TGCCACCTCTAGATTTGAAT+GGG | 0.457425 | 2_4:-511568 | Msa0307550:CDS |
GACAATGTGAACAACTTGTT+CGG | 0.471067 | 2_4:-508835 | Msa0307550:CDS |
AGGTGCTGATTTAATTATCA+TGG | 0.471586 | 2_4:-510298 | Msa0307550:CDS |
ATTCATGGAGGTACGTGTAC+TGG | 0.472495 | 2_4:+508567 | None:intergenic |
AATAAAGGAAGAACTACCTA+TGG | 0.476692 | 2_4:-508780 | Msa0307550:CDS |
TCCCATTCAGTCTCTGCACA+AGG | 0.479917 | 2_4:+509294 | None:intergenic |
TTTGTCTAGAAGTACACTTT+CGG | 0.482745 | 2_4:+508388 | None:intergenic |
AATACAGTTCCCTCCCTACT+TGG | 0.491522 | 2_4:-508640 | Msa0307550:three_prime_UTR |
AACGATTCCGACGGCGGCAG+GGG | 0.497132 | 2_4:+513459 | None:intergenic |
CAACAAGAGCAGATAGCAAA+AGG | 0.499136 | 2_4:-513763 | Msa0307550:CDS |
ACTAGTCATGTTGTTGAATA+CGG | 0.499306 | 2_4:-513364 | Msa0307550:CDS |
TAAGTCTTGTAATCCTTGAC+TGG | 0.500007 | 2_4:+509215 | None:intergenic |
CATAGCCATGGCCATCGCTC+TGG | 0.500566 | 2_4:+513735 | None:intergenic |
AATCTTGTAAAACTCTATCT+GGG | 0.502514 | 2_4:-508590 | Msa0307550:three_prime_UTR |
CTATCTCAGGCTGAAAATGT+TGG | 0.502988 | 2_4:-511905 | Msa0307550:CDS |
ATGCCACCTCTAGATTTGAA+TGG | 0.505081 | 2_4:-511569 | Msa0307550:CDS |
TGGTCGTCTGGATCTATCTC+AGG | 0.507597 | 2_4:-511918 | Msa0307550:CDS |
CCGCACGCGGTGTCTATCGC+GGG | 0.507948 | 2_4:-513424 | Msa0307550:CDS |
TGACGCCACGTGGCGGTAGT+TGG | 0.510315 | 2_4:+513646 | None:intergenic |
AGTCTTAGAGATTGTGGGTA+TGG | 0.511281 | 2_4:-509184 | Msa0307550:CDS |
TGGAGTGAAGAAACGGTTGT+TGG | 0.515841 | 2_4:+513669 | None:intergenic |
AGCCTTGTGCAGAGACTGAA+TGG | 0.517001 | 2_4:-509296 | Msa0307550:CDS |
AAACTGATTGATTTGAGGGT+GGG | 0.517457 | 2_4:+508420 | None:intergenic |
AGGGATGCTGCATTGTCACT+TGG | 0.519129 | 2_4:-508737 | Msa0307550:CDS |
ATGATATCATACCTGATTGA+CGG | 0.519741 | 2_4:+509131 | None:intergenic |
GAACGATTCCGACGGCGGCA+GGG | 0.524304 | 2_4:+513458 | None:intergenic |
TTGTCACTTGGACAGATAAG+TGG | 0.525014 | 2_4:-508725 | Msa0307550:CDS |
TTTGGATTCCGATGGAAATG+TGG | 0.527027 | 2_4:-513335 | Msa0307550:CDS |
TTAGAGATTGTGGGTATGGA+TGG | 0.532667 | 2_4:-509180 | Msa0307550:CDS |
GTTGTTGAACTTCAATGTCA+TGG | 0.533379 | 2_4:-513256 | Msa0307550:CDS |
TATTCAACAACATGACTAGT+AGG | 0.533705 | 2_4:+513367 | None:intergenic |
TGTTGAGAATGCATTGGAAA+CGG | 0.536515 | 2_4:-511513 | Msa0307550:CDS |
ATAACCCTTCTTGATACTGC+AGG | 0.539605 | 2_4:-510845 | Msa0307550:CDS |
CGATCTGAAGCTGCTGCTAG+AGG | 0.542217 | 2_4:-510318 | Msa0307550:CDS |
ACATGTGCTGTAACCAGTCA+AGG | 0.542704 | 2_4:-509228 | Msa0307550:CDS |
TCCGCACGCGGTGTCTATCG+CGG | 0.544538 | 2_4:-513425 | Msa0307550:CDS |
AAAACCACTTAGCACCAAGT+AGG | 0.549300 | 2_4:+508626 | None:intergenic |
TGTCACTTGGACAGATAAGT+GGG | 0.555119 | 2_4:-508724 | Msa0307550:CDS |
ATTGTTGGCCGTCCTAATGT+TGG | 0.555329 | 2_4:-511257 | Msa0307550:CDS |
AGGGCAGTCTTAGAGATTGT+GGG | 0.556340 | 2_4:-509189 | Msa0307550:CDS |
AAAATAGTTATACATAGCAC+TGG | 0.557988 | 2_4:+508456 | None:intergenic |
AAACCACTTAGCACCAAGTA+GGG | 0.559204 | 2_4:+508627 | None:intergenic |
GCCACATGTTTCTCGCGGGT+CGG | 0.564172 | 2_4:+513392 | None:intergenic |
TGTTGACCACAAGGATTACC+GGG | 0.564759 | 2_4:+509331 | None:intergenic |
AGTCAAGCCTTCTTAATGCA+TGG | 0.572156 | 2_4:-511232 | Msa0307550:CDS |
ATGGATGGCATTGCTGCTGG+GGG | 0.572959 | 2_4:-509165 | Msa0307550:CDS |
AAAACTGATTGATTTGAGGG+TGG | 0.573382 | 2_4:+508419 | None:intergenic |
TGATGCCTGCAGTATCAAGA+AGG | 0.577067 | 2_4:+510840 | None:intergenic |
TCGTCTTTCGGGTCCGCACG+CGG | 0.577355 | 2_4:-513437 | Msa0307550:CDS |
TATATTTGATAAAACCTCCT+CGG | 0.579088 | 2_4:+508691 | None:intergenic |
GCCTTGTGCAGAGACTGAAT+GGG | 0.579349 | 2_4:-509295 | Msa0307550:CDS |
TTGTTGAACTTCAATGTCAT+GGG | 0.580501 | 2_4:-513255 | Msa0307550:CDS |
AAGGATTACAAGACTTAGAG+AGG | 0.583392 | 2_4:-509209 | Msa0307550:CDS |
CACTTAGCACCAAGTAGGGA+GGG | 0.593522 | 2_4:+508631 | None:intergenic |
ATCAACTGGATCTTCAACCC+CGG | 0.594015 | 2_4:-509349 | Msa0307550:CDS |
TAGTTGGTGGAGTGAAGAAA+CGG | 0.597002 | 2_4:+513662 | None:intergenic |
GGCCGCCACATGTTTCTCGC+GGG | 0.600817 | 2_4:+513388 | None:intergenic |
ACAAGATGTTGAGAATGCAT+TGG | 0.601302 | 2_4:-511519 | Msa0307550:CDS |
CAGAACCAGAGCGATGGCCA+TGG | 0.602088 | 2_4:-513740 | Msa0307550:CDS |
ACGATTCCGACGGCGGCAGG+GGG | 0.602863 | 2_4:+513460 | None:intergenic |
AATCTATCTTGTTGACCACA+AGG | 0.604604 | 2_4:+509322 | None:intergenic |
TCTTGATACTGCAGGCATCA+GGG | 0.606241 | 2_4:-510837 | Msa0307550:CDS |
CTCATCGACCACATTTCCAT+CGG | 0.611268 | 2_4:+513327 | None:intergenic |
TACAATAAAACTGATCCCCA+CGG | 0.611719 | 2_4:+508530 | None:intergenic |
AGGCCGCCACATGTTTCTCG+CGG | 0.615162 | 2_4:+513387 | None:intergenic |
ATAATCCCATTCAAATCTAG+AGG | 0.615783 | 2_4:+511563 | None:intergenic |
CGATGGAAATGTGGTCGATG+AGG | 0.618613 | 2_4:-513326 | Msa0307550:CDS |
TCCGACCCGCGAGAAACATG+TGG | 0.624515 | 2_4:-513393 | Msa0307550:CDS |
CAGTATCAAGAAGGGTTATG+GGG | 0.625181 | 2_4:+510849 | None:intergenic |
AAGACGAACGATTCCGACGG+CGG | 0.629919 | 2_4:+513453 | None:intergenic |
TGAACAACTTGTTCGGACCA+AGG | 0.630361 | 2_4:-508828 | Msa0307550:CDS |
CCACTTAGCACCAAGTAGGG+AGG | 0.630943 | 2_4:+508630 | None:intergenic |
TACGACCTTGGTGCTAACAT+CGG | 0.633093 | 2_4:+513292 | None:intergenic |
TCTTCACGAGTATACGACCT+TGG | 0.636759 | 2_4:+513280 | None:intergenic |
ATCCCATTCAAATCTAGAGG+TGG | 0.637267 | 2_4:+511566 | None:intergenic |
TTGACTTGCCAACATTAGGA+CGG | 0.637499 | 2_4:+511249 | None:intergenic |
TTCAACCCCGGTAATCCTTG+TGG | 0.639182 | 2_4:-509337 | Msa0307550:CDS |
CAGGGACACTGATGACATTG+TGG | 0.639357 | 2_4:-510819 | Msa0307550:CDS |
GCAGAGACTGAATGGGACAA+AGG | 0.640900 | 2_4:-509288 | Msa0307550:CDS |
GATGCCTGCAGTATCAAGAA+GGG | 0.640954 | 2_4:+510841 | None:intergenic |
AAAAGGCAGAACCAGAGCGA+TGG | 0.651136 | 2_4:-513746 | Msa0307550:CDS |
ACCGCCTAAGGATGTTACAA+TGG | 0.656047 | 2_4:+513483 | None:intergenic |
AGGATTACAAGACTTAGAGA+GGG | 0.656413 | 2_4:-509208 | Msa0307550:CDS |
TTAAAATATTAAATTCATGG+AGG | 0.661998 | 2_4:+508555 | None:intergenic |
CGAAAGACGAACGATTCCGA+CGG | 0.662368 | 2_4:+513450 | None:intergenic |
TGTGGTCGATGAGGTTATAG+CGG | 0.663930 | 2_4:-513317 | Msa0307550:CDS |
GCGGAAAGAAGACATAGCCA+TGG | 0.667622 | 2_4:+513723 | None:intergenic |
CCCGCGATAGACACCGCGTG+CGG | 0.668512 | 2_4:+513424 | None:intergenic |
AAGAAGAGAGTGACGCCACG+TGG | 0.671207 | 2_4:+513636 | None:intergenic |
GTATGTGACGAAATATAATG+CGG | 0.675794 | 2_4:+513704 | None:intergenic |
AAGTGGGGAAGATATATCCG+AGG | 0.686406 | 2_4:-508708 | Msa0307550:CDS |
GCCATTGTAACATCCTTAGG+CGG | 0.688294 | 2_4:-513484 | Msa0307550:CDS |
AAATGTTGGAAAACTGATTG+CGG | 0.689769 | 2_4:-511891 | Msa0307550:CDS |
GACCCGCGAGAAACATGTGG+CGG | 0.697263 | 2_4:-513390 | Msa0307550:CDS |
CGGTGCCGATGTTAGCACCA+AGG | 0.700325 | 2_4:-513297 | Msa0307550:CDS |
CTCCACCAACTACCGCCACG+TGG | 0.700533 | 2_4:-513651 | Msa0307550:CDS |
TGGGGAAGATATATCCGAGG+AGG | 0.703973 | 2_4:-508705 | Msa0307550:CDS |
AAGAGAGTGACGCCACGTGG+CGG | 0.706225 | 2_4:+513639 | None:intergenic |
TGTTGAGTTTGCAACAACGT+CGG | 0.713642 | 2_4:+513516 | None:intergenic |
GTCACTTGGACAGATAAGTG+GGG | 0.732820 | 2_4:-508723 | Msa0307550:CDS |
GTTGACCACAAGGATTACCG+GGG | 0.737939 | 2_4:+509332 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ACTATTTTTATATAAGTTAT+AGG | + | chr2_4:509737-509756 | None:intergenic | 10.0% |
!! | TAACTTATATAAAAATAGTT+TGG | - | chr2_4:509738-509757 | Msa0307550:intron | 10.0% |
!!! | ATTATTTTCATATAAGTTTT+AGG | + | chr2_4:509865-509884 | None:intergenic | 10.0% |
!! | ATATATGTTAATATGTATAA+TGG | - | chr2_4:510062-510081 | Msa0307550:intron | 10.0% |
!!! | AAAATTCACTTATAATTTTA+AGG | + | chr2_4:511942-511961 | None:intergenic | 10.0% |
!!! | TAAAAATTTGCTATATTTTT+AGG | - | chr2_4:512253-512272 | Msa0307550:intron | 10.0% |
!!! | AAAAATTTGCTATATTTTTA+GGG | - | chr2_4:512254-512273 | Msa0307550:intron | 10.0% |
!! | CTTTATCAAATTATTAAATA+GGG | + | chr2_4:512297-512316 | None:intergenic | 10.0% |
!! | TCTTTATCAAATTATTAAAT+AGG | + | chr2_4:512298-512317 | None:intergenic | 10.0% |
!!! | AAATATAACATTTTCTTATA+TGG | - | chr2_4:512321-512340 | Msa0307550:intron | 10.0% |
!! | TCATATTAAGATTAATAAGA+GGG | + | chr2_4:510777-510796 | None:intergenic | 15.0% |
!! | TTCATATTAAGATTAATAAG+AGG | + | chr2_4:510778-510797 | None:intergenic | 15.0% |
!! | AGTAAATAAGTAAAGTAATT+GGG | + | chr2_4:510877-510896 | None:intergenic | 15.0% |
!! | TAGTAAATAAGTAAAGTAAT+TGG | + | chr2_4:510878-510897 | None:intergenic | 15.0% |
!!! | TTTACTTCATTATTTTATGA+TGG | - | chr2_4:510967-510986 | Msa0307550:intron | 15.0% |
!!! | ATTATTTTATGATGGTTAAT+TGG | - | chr2_4:510975-510994 | Msa0307550:intron | 15.0% |
!!! | GTGATTTTATAATAAGTAAA+TGG | - | chr2_4:511347-511366 | Msa0307550:intron | 15.0% |
!!! | AAAGCTGAATATTTTTATAT+AGG | - | chr2_4:511498-511517 | Msa0307550:CDS | 15.0% |
!! | ACCAAAAAAAAAAAAAGAAA+TGG | - | chr2_4:511565-511584 | Msa0307550:CDS | 15.0% |
!!! | TCCATTTCTTTTTTTTTTTT+TGG | + | chr2_4:511569-511588 | None:intergenic | 15.0% |
!! | ACATTAATATGAACATAAAT+TGG | + | chr2_4:512046-512065 | None:intergenic | 15.0% |
!!! | AATTTTTTAACCTTTTCATT+GGG | - | chr2_4:512998-513017 | Msa0307550:intron | 15.0% |
!! | TTAAAATATTAAATTCATGG+AGG | + | chr2_4:513519-513538 | None:intergenic | 15.0% |
!!! | GCTTTAAAATATTAAATTCA+TGG | + | chr2_4:513522-513541 | None:intergenic | 15.0% |
!! | TTAATAACAATTAACATACC+TGG | + | chr2_4:508905-508924 | None:intergenic | 20.0% |
!! | TGTTGTATAATATTCAAACA+TGG | - | chr2_4:509608-509627 | Msa0307550:intron | 20.0% |
!! | ATTAAATTGTTTACCGAAAA+AGG | - | chr2_4:509838-509857 | Msa0307550:intron | 20.0% |
!! | ATTATAAAATCACAGTTGAT+GGG | + | chr2_4:511340-511359 | None:intergenic | 20.0% |
!! | TATTATAAAATCACAGTTGA+TGG | + | chr2_4:511341-511360 | None:intergenic | 20.0% |
!! | TGACTATAACTGAAATAAAA+CGG | - | chr2_4:511410-511429 | Msa0307550:intron | 20.0% |
!!! | TAGTTCTCAATTTTTTGAAA+TGG | - | chr2_4:511529-511548 | Msa0307550:CDS | 20.0% |
!!! | AAATAAGATTAGTTAGATAC+AGG | - | chr2_4:511604-511623 | Msa0307550:CDS | 20.0% |
!!! | AATAAGATTAGTTAGATACA+GGG | - | chr2_4:511605-511624 | Msa0307550:CDS | 20.0% |
!! | AAATGGAATAAAGATAATTG+TGG | + | chr2_4:511873-511892 | None:intergenic | 20.0% |
!! | TCTTGTTCATGATATTTAAT+AGG | - | chr2_4:511898-511917 | Msa0307550:CDS | 20.0% |
!! | CTTGTTCATGATATTTAATA+GGG | - | chr2_4:511899-511918 | Msa0307550:CDS | 20.0% |
!!! | AACTTTTTCGTTTTGTTTTT+TGG | - | chr2_4:512010-512029 | Msa0307550:intron | 20.0% |
!! | ATTTCTTGAACATAGTAATA+TGG | + | chr2_4:512169-512188 | None:intergenic | 20.0% |
!!! | AAACAAAATGAAATTTTGTG+AGG | - | chr2_4:512194-512213 | Msa0307550:intron | 20.0% |
!! | TTAGTCCCTAAAAAATAAAA+CGG | + | chr2_4:512231-512250 | None:intergenic | 20.0% |
!!! | TGTAAAATCTTTAGTGTTTT+TGG | + | chr2_4:512580-512599 | None:intergenic | 20.0% |
!!! | TTTTTTATTGTCTTACAACA+TGG | + | chr2_4:512655-512674 | None:intergenic | 20.0% |
!!! | CAATTTTTTAACCTTTTCAT+TGG | - | chr2_4:512997-513016 | Msa0307550:intron | 20.0% |
!! | TTTATGCTTATTTGTGAAAA+CGG | - | chr2_4:513100-513119 | Msa0307550:intron | 20.0% |
!!! | GAGGTTTTATCAAATATATT+TGG | - | chr2_4:513385-513404 | Msa0307550:CDS | 20.0% |
!!! | AATTTAATATTTTAAAGCCG+TGG | - | chr2_4:513524-513543 | Msa0307550:CDS | 20.0% |
!!! | ATTTAATATTTTAAAGCCGT+GGG | - | chr2_4:513525-513544 | Msa0307550:CDS | 20.0% |
!! | TTATTTGATCATAGTCAAAA+AGG | + | chr2_4:513595-513614 | None:intergenic | 20.0% |
!!! | TGCTATGTATAACTATTTTT+GGG | - | chr2_4:513619-513638 | Msa0307550:CDS | 20.0% |
!! | TAACCTAATCCTTATGTTTT+CGG | - | chr2_4:508922-508941 | Msa0307550:intron | 25.0% |
! | TAAAATAAGCCGAAAACATA+AGG | + | chr2_4:508934-508953 | None:intergenic | 25.0% |
! | TCCAAAAGAAATGACAATAT+AGG | - | chr2_4:509255-509274 | Msa0307550:CDS | 25.0% |
!!! | TCCTATATTGTCATTTCTTT+TGG | + | chr2_4:509259-509278 | None:intergenic | 25.0% |
! | AATCTCTAGATCTTTCTTAA+TGG | + | chr2_4:509486-509505 | None:intergenic | 25.0% |
! | TGTGATATTTGTATTTCCAT+AGG | - | chr2_4:509685-509704 | Msa0307550:intron | 25.0% |
! | AACATAAGCTCTTATCATAT+AGG | + | chr2_4:509807-509826 | None:intergenic | 25.0% |
!!! | ATAAGTTTTAGGTCCTTTTT+CGG | + | chr2_4:509854-509873 | None:intergenic | 25.0% |
!!! | TAGTTTATTGGTTTCATCTA+TGG | - | chr2_4:510330-510349 | Msa0307550:intron | 25.0% |
!!! | AGTTTATTGGTTTCATCTAT+GGG | - | chr2_4:510331-510350 | Msa0307550:intron | 25.0% |
! | TGAAAAAGTTGTTATCTTCT+TGG | - | chr2_4:510385-510404 | Msa0307550:intron | 25.0% |
! | TTAACCAAAACAATTCTATG+TGG | - | chr2_4:510710-510729 | Msa0307550:intron | 25.0% |
! | TAACCAAAACAATTCTATGT+GGG | - | chr2_4:510711-510730 | Msa0307550:intron | 25.0% |
!! | TGAATCTTTAGTATTAGCTT+TGG | - | chr2_4:510925-510944 | Msa0307550:CDS | 25.0% |
! | TGAACTCCACAATTTATTTA+AGG | - | chr2_4:511002-511021 | Msa0307550:intron | 25.0% |
! | GAACTCCACAATTTATTTAA+GGG | - | chr2_4:511003-511022 | Msa0307550:intron | 25.0% |
! | AACTCCACAATTTATTTAAG+GGG | - | chr2_4:511004-511023 | Msa0307550:intron | 25.0% |
!!! | TTTTTTTTTTTTGGTTACCC+AGG | + | chr2_4:511560-511579 | None:intergenic | 25.0% |
!!! | CTAATCTTATTTGATTTTCC+AGG | + | chr2_4:511596-511615 | None:intergenic | 25.0% |
! | AAATACTGCTTAATCAAATC+AGG | + | chr2_4:511643-511662 | None:intergenic | 25.0% |
! | TTTGATTAAGCAGTATTTAG+AGG | - | chr2_4:511645-511664 | Msa0307550:CDS | 25.0% |
! | TTAGTCCCTAAAAAATAAAG+CGG | - | chr2_4:511966-511985 | Msa0307550:intron | 25.0% |
!!! | TTTTGTTTTTTGGTCCTTAA+TGG | - | chr2_4:512020-512039 | Msa0307550:intron | 25.0% |
! | ATAGTAATATGGACATACAA+AGG | + | chr2_4:512158-512177 | None:intergenic | 25.0% |
!!! | AACATCCCGTTTTATTTTTT+AGG | - | chr2_4:512222-512241 | Msa0307550:intron | 25.0% |
!!! | ACATCCCGTTTTATTTTTTA+GGG | - | chr2_4:512223-512242 | Msa0307550:intron | 25.0% |
! | TAGTCCCTAAAAAATAAAAC+GGG | + | chr2_4:512230-512249 | None:intergenic | 25.0% |
!!! | ATTTGCTATATTTTTAGGGA+AGG | - | chr2_4:512258-512277 | Msa0307550:intron | 25.0% |
! | TCTTTATGTTGACATTAAAC+TGG | - | chr2_4:512610-512629 | Msa0307550:intron | 25.0% |
! | ACATGGTAGAAAATAACATT+AGG | + | chr2_4:512638-512657 | None:intergenic | 25.0% |
! | AATCAGGTATGATATCATAT+TGG | - | chr2_4:512945-512964 | Msa0307550:intron | 25.0% |
! | AAACTCAAACTAGATGTAAA+AGG | - | chr2_4:513073-513092 | Msa0307550:intron | 25.0% |
! | TTATGCTTATTTGTGAAAAC+GGG | - | chr2_4:513101-513120 | Msa0307550:intron | 25.0% |
! | GAGATTACAATCATCAATAA+AGG | - | chr2_4:513276-513295 | Msa0307550:CDS | 25.0% |
!!! | ATTTTTGGACAATTGATTTG+AGG | - | chr2_4:513314-513333 | Msa0307550:CDS | 25.0% |
!!! | TTTTTGGACAATTGATTTGA+GGG | - | chr2_4:513315-513334 | Msa0307550:CDS | 25.0% |
! | TATATTTGATAAAACCTCCT+CGG | + | chr2_4:513383-513402 | None:intergenic | 25.0% |
! | AATCTTGTAAAACTCTATCT+GGG | - | chr2_4:513481-513500 | Msa0307550:CDS | 25.0% |
!!! | TTTAATATTTTAAAGCCGTG+GGG | - | chr2_4:513526-513545 | Msa0307550:CDS | 25.0% |
! | AAAATAGTTATACATAGCAC+TGG | + | chr2_4:513618-513637 | None:intergenic | 25.0% |
!! | GTGCTATGTATAACTATTTT+TGG | - | chr2_4:513618-513637 | Msa0307550:CDS | 25.0% |
!!! | TATGTATAACTATTTTTGGG+AGG | - | chr2_4:513622-513641 | Msa0307550:CDS | 25.0% |
!!! | ACAAAAACTGATTGATTTGA+GGG | + | chr2_4:513658-513677 | None:intergenic | 25.0% |
GTATGTGACGAAATATAATG+CGG | + | chr2_4:508370-508389 | None:intergenic | 30.0% | |
TATTCAACAACATGACTAGT+AGG | + | chr2_4:508707-508726 | None:intergenic | 30.0% | |
ACTAGTCATGTTGTTGAATA+CGG | - | chr2_4:508707-508726 | Msa0307550:CDS | 30.0% | |
TTGTTGAACTTCAATGTCAT+GGG | - | chr2_4:508816-508835 | Msa0307550:CDS | 30.0% | |
AAGCTGTTTATTCAAAAGCT+AGG | - | chr2_4:509079-509098 | Msa0307550:intron | 30.0% | |
! | AGTTTTGCTCTGACTTTAAT+TGG | - | chr2_4:509195-509214 | Msa0307550:CDS | 30.0% |
! | GTTTTGCTCTGACTTTAATT+GGG | - | chr2_4:509196-509215 | Msa0307550:CDS | 30.0% |
!! | TGTCATTTCTTTTGGAAACT+CGG | + | chr2_4:509251-509270 | None:intergenic | 30.0% |
!!! | CCATTTTGATTTTCTACGAT+AGG | + | chr2_4:509345-509364 | None:intergenic | 30.0% |
CCTATCGTAGAAAATCAAAA+TGG | - | chr2_4:509342-509361 | Msa0307550:CDS | 30.0% | |
ATCGTAGAAAATCAAAATGG+AGG | - | chr2_4:509345-509364 | Msa0307550:CDS | 30.0% | |
AAATCAAAATGGAGGAAACT+CGG | - | chr2_4:509353-509372 | Msa0307550:CDS | 30.0% | |
AAGCTATACTAGATAACCTA+TGG | + | chr2_4:509704-509723 | None:intergenic | 30.0% | |
TCATTTAACAAGGTCTTCTT+TGG | + | chr2_4:509976-509995 | None:intergenic | 30.0% | |
AACGAAGCTTTCATTTAACA+AGG | + | chr2_4:509986-510005 | None:intergenic | 30.0% | |
! | TAATGGAGTACATTGCTATT+TGG | - | chr2_4:510079-510098 | Msa0307550:intron | 30.0% |
AAATGTTGGAAAACTGATTG+CGG | - | chr2_4:510180-510199 | Msa0307550:intron | 30.0% | |
AGATGTCAGACTTAGTTTAT+TGG | - | chr2_4:510318-510337 | Msa0307550:CDS | 30.0% | |
ATAATCCCATTCAAATCTAG+AGG | + | chr2_4:510511-510530 | None:intergenic | 30.0% | |
TCTAGATTTGAATGGGATTA+TGG | - | chr2_4:510510-510529 | Msa0307550:intron | 30.0% | |
TACACCCCTTAAATAAATTG+TGG | + | chr2_4:511011-511030 | None:intergenic | 30.0% | |
TAGTAGATGTTTGTGTGTTT+GGG | - | chr2_4:511033-511052 | Msa0307550:intron | 30.0% | |
TCCATAGTTAGTAATCATCT+TGG | - | chr2_4:511066-511085 | Msa0307550:intron | 30.0% | |
GAAGCAAGTATCAACATTAA+CGG | - | chr2_4:511196-511215 | Msa0307550:intron | 30.0% | |
GATGACATTGTGGAAAAAAT+TGG | - | chr2_4:511262-511281 | Msa0307550:CDS | 30.0% | |
!!! | TTTTTTGAAATGGAAACTCC+TGG | - | chr2_4:511539-511558 | Msa0307550:CDS | 30.0% |
!!! | TTTTTGAAATGGAAACTCCT+GGG | - | chr2_4:511540-511559 | Msa0307550:CDS | 30.0% |
AAAAAAGAAATGGAAACTCC+TGG | - | chr2_4:511575-511594 | Msa0307550:CDS | 30.0% | |
TTAAAGTAGCAAAACACTGA+TGG | + | chr2_4:511690-511709 | None:intergenic | 30.0% | |
ATTAAGAGGATACATACATG+TGG | + | chr2_4:511723-511742 | None:intergenic | 30.0% | |
CATGTATGTATCCTCTTAAT+AGG | - | chr2_4:511723-511742 | Msa0307550:intron | 30.0% | |
!! | AGGTGCTGATTTAATTATCA+TGG | - | chr2_4:511773-511792 | Msa0307550:intron | 30.0% |
AAGACATCAAACTTCTTGAA+AGG | - | chr2_4:511826-511845 | Msa0307550:intron | 30.0% | |
!! | TCATGAACAAGAGTACTAAA+TGG | + | chr2_4:511890-511909 | None:intergenic | 30.0% |
TAGTCCCTAAAAAATAAAGC+GGG | - | chr2_4:511967-511986 | Msa0307550:intron | 30.0% | |
TGAACATAAATTGGCCATTA+AGG | + | chr2_4:512037-512056 | None:intergenic | 30.0% | |
CATAATAGATGGACATACAA+AGG | + | chr2_4:512130-512149 | None:intergenic | 30.0% | |
CAAAGGTTGAACATAATAGA+TGG | + | chr2_4:512141-512160 | None:intergenic | 30.0% | |
!! | TTACTTTTGTAGTGACGAAA+GGG | + | chr2_4:512433-512452 | None:intergenic | 30.0% |
!! | TTTACTTTTGTAGTGACGAA+AGG | + | chr2_4:512434-512453 | None:intergenic | 30.0% |
AAATAGAGAGATCAACTACA+TGG | - | chr2_4:512467-512486 | Msa0307550:intron | 30.0% | |
TTTAATCTTTCTGTAACGAC+AGG | - | chr2_4:512698-512717 | Msa0307550:intron | 30.0% | |
ATGATATCATACCTGATTGA+CGG | + | chr2_4:512943-512962 | None:intergenic | 30.0% | |
! | ATTGATTCTTCCCAATGAAA+AGG | + | chr2_4:513011-513030 | None:intergenic | 30.0% |
TTCATTGGGAAGAATCAATT+AGG | - | chr2_4:513012-513031 | Msa0307550:intron | 30.0% | |
TTTACCAAAACATAGATTCG+TGG | + | chr2_4:513056-513075 | None:intergenic | 30.0% | |
ATGGAAAATAGCAACATAAC+TGG | - | chr2_4:513127-513146 | Msa0307550:intron | 30.0% | |
AATAAAGGAAGAACTACCTA+TGG | - | chr2_4:513291-513310 | Msa0307550:CDS | 30.0% | |
! | AAGAACTACCTATGGATTTT+TGG | - | chr2_4:513299-513318 | Msa0307550:CDS | 30.0% |
TCAATTGTCCAAAAATCCAT+AGG | + | chr2_4:513310-513329 | None:intergenic | 30.0% | |
ATATTTGGCAAGTTCTGTAT+TGG | - | chr2_4:513400-513419 | Msa0307550:CDS | 30.0% | |
CAATCTTGTAAAACTCTATC+TGG | - | chr2_4:513480-513499 | Msa0307550:CDS | 30.0% | |
!! | CACAAAAACTGATTGATTTG+AGG | + | chr2_4:513659-513678 | None:intergenic | 30.0% |
! | TTTGTCTAGAAGTACACTTT+CGG | + | chr2_4:513686-513705 | None:intergenic | 30.0% |
GTTGTTGAACTTCAATGTCA+TGG | - | chr2_4:508815-508834 | Msa0307550:CDS | 35.0% | |
! | CTTAGGATTTGTTTAGAAGC+TGG | - | chr2_4:508863-508882 | Msa0307550:intron | 35.0% |
AAGCCGAAAACATAAGGATT+AGG | + | chr2_4:508928-508947 | None:intergenic | 35.0% | |
! | GTGCTTTTCTTAAGGTCTTT+AGG | - | chr2_4:509122-509141 | Msa0307550:intron | 35.0% |
GTGCTAACAATTCATGTGTT+AGG | - | chr2_4:509159-509178 | Msa0307550:CDS | 35.0% | |
AGAAGACCTGTAGATTCTAT+AGG | - | chr2_4:509400-509419 | Msa0307550:intron | 35.0% | |
CTTCTACCTATAGAATCTAC+AGG | + | chr2_4:509409-509428 | None:intergenic | 35.0% | |
AGGTAGAAGAGTAAATCAGA+TGG | - | chr2_4:509420-509439 | Msa0307550:intron | 35.0% | |
TAGAAGAGTAAATCAGATGG+AGG | - | chr2_4:509423-509442 | Msa0307550:intron | 35.0% | |
AGAAGAGTAAATCAGATGGA+GGG | - | chr2_4:509424-509443 | Msa0307550:intron | 35.0% | |
! | CCTTATAGTTTTTGCATCCA+GGG | + | chr2_4:509459-509478 | None:intergenic | 35.0% |
CCTGGATGCAAAAACTATAA+GGG | - | chr2_4:509457-509476 | Msa0307550:intron | 35.0% | |
ACATTTACGTGCGTATTAAG+TGG | - | chr2_4:510029-510048 | Msa0307550:intron | 35.0% | |
!! | GATTTGCGTTTTGTTCTTTC+AGG | - | chr2_4:510103-510122 | Msa0307550:intron | 35.0% |
! | ACTCTTCGTGCTTTTCTAAA+TGG | - | chr2_4:510133-510152 | Msa0307550:intron | 35.0% |
AAGTTGTTATCTTCTTGGAC+AGG | - | chr2_4:510390-510409 | Msa0307550:intron | 35.0% | |
AGTTGTTATCTTCTTGGACA+GGG | - | chr2_4:510391-510410 | Msa0307550:intron | 35.0% | |
TCTCAACATCTTGTGACATA+TGG | + | chr2_4:510546-510565 | None:intergenic | 35.0% | |
ACAAGATGTTGAGAATGCAT+TGG | - | chr2_4:510552-510571 | Msa0307550:intron | 35.0% | |
TGTTGAGAATGCATTGGAAA+CGG | - | chr2_4:510558-510577 | Msa0307550:intron | 35.0% | |
CAATCTGGATTACAGGTATA+TGG | - | chr2_4:510601-510620 | Msa0307550:intron | 35.0% | |
! | AGACCCACATAGAATTGTTT+TGG | + | chr2_4:510717-510736 | None:intergenic | 35.0% |
TTCTTGCAGATAGCAATTGT+TGG | - | chr2_4:510799-510818 | Msa0307550:intron | 35.0% | |
CTAGTAGATGTTTGTGTGTT+TGG | - | chr2_4:511032-511051 | Msa0307550:intron | 35.0% | |
GCCAAGATGATTACTAACTA+TGG | + | chr2_4:511070-511089 | None:intergenic | 35.0% | |
GCAATAGTTACTGAAATTGC+TGG | - | chr2_4:511154-511173 | Msa0307550:intron | 35.0% | |
TACAGTACAGATTACAGAGA+AGG | + | chr2_4:511297-511316 | None:intergenic | 35.0% | |
!! | AAGCAGTATTTAGAGGTATC+TGG | - | chr2_4:511652-511671 | Msa0307550:CDS | 35.0% |
TACATACATGTGGAGCAATA+TGG | + | chr2_4:511713-511732 | None:intergenic | 35.0% | |
TAATTGTGGCAAAACCTTAG+CGG | + | chr2_4:511859-511878 | None:intergenic | 35.0% | |
AGTCCCTAAAAAATAAAGCG+GGG | - | chr2_4:511968-511987 | Msa0307550:intron | 35.0% | |
!!! | ATCCCCCGCTTTATTTTTTA+GGG | + | chr2_4:511974-511993 | None:intergenic | 35.0% |
CAAAACGAAAAAGTTATGCG+AGG | + | chr2_4:512005-512024 | None:intergenic | 35.0% | |
CAAAGGTTGAACAAAGTAGA+TGG | + | chr2_4:512113-512132 | None:intergenic | 35.0% | |
AATCTATCTTGTTGACCACA+AGG | + | chr2_4:512752-512771 | None:intergenic | 35.0% | |
! | TAAGTCTTGTAATCCTTGAC+TGG | + | chr2_4:512859-512878 | None:intergenic | 35.0% |
AAGGATTACAAGACTTAGAG+AGG | - | chr2_4:512862-512881 | Msa0307550:intron | 35.0% | |
AGGATTACAAGACTTAGAGA+GGG | - | chr2_4:512863-512882 | Msa0307550:intron | 35.0% | |
AAACATAGATTCGTGGTAAC+AGG | + | chr2_4:513049-513068 | None:intergenic | 35.0% | |
! | GTTACCACGAATCTATGTTT+TGG | - | chr2_4:513049-513068 | Msa0307550:intron | 35.0% |
TATTTGTGAAAACGGGTAGA+TGG | - | chr2_4:513108-513127 | Msa0307550:intron | 35.0% | |
TGTCAAACAGATCAACACTT+GGG | + | chr2_4:513201-513220 | None:intergenic | 35.0% | |
! | GACAATGTGAACAACTTGTT+CGG | - | chr2_4:513236-513255 | Msa0307550:CDS | 35.0% |
TACAATAAAACTGATCCCCA+CGG | + | chr2_4:513544-513563 | None:intergenic | 35.0% | |
TCATAGTCAAAAAGGTCATG+TGG | + | chr2_4:513587-513606 | None:intergenic | 35.0% | |
!! | AAACTGATTGATTTGAGGGT+GGG | + | chr2_4:513654-513673 | None:intergenic | 35.0% |
!! | AAAACTGATTGATTTGAGGG+TGG | + | chr2_4:513655-513674 | None:intergenic | 35.0% |
CAACAAGAGCAGATAGCAAA+AGG | - | chr2_4:508308-508327 | Msa0307550:three_prime_UTR | 40.0% | |
!!! | GAAGAAACGGTTGTTGGTTT+TGG | + | chr2_4:508399-508418 | None:intergenic | 40.0% |
!! | TAGTTGGTGGAGTGAAGAAA+CGG | + | chr2_4:508412-508431 | None:intergenic | 40.0% |
GAGTAAACGTTCGTCTTTGT+TGG | + | chr2_4:508507-508526 | None:intergenic | 40.0% | |
TGTTGAGTTTGCAACAACGT+CGG | + | chr2_4:508558-508577 | None:intergenic | 40.0% | |
!!! | TGTTGAATACGGTGTCGTTT+TGG | - | chr2_4:508718-508737 | Msa0307550:CDS | 40.0% |
TTTGGATTCCGATGGAAATG+TGG | - | chr2_4:508736-508755 | Msa0307550:CDS | 40.0% | |
GCTAGGATTAGAAATGACCT+CGG | - | chr2_4:509096-509115 | Msa0307550:intron | 40.0% | |
ACACATGAATTGTTAGCACC+TGG | + | chr2_4:509158-509177 | None:intergenic | 40.0% | |
!! | TCTTTTGGAAACTCGGTATC+TGG | + | chr2_4:509244-509263 | None:intergenic | 40.0% |
ACGACAACATTAGAGAGAGT+TGG | - | chr2_4:509312-509331 | Msa0307550:CDS | 40.0% | |
CGACAACATTAGAGAGAGTT+GGG | - | chr2_4:509313-509332 | Msa0307550:CDS | 40.0% | |
GACAACATTAGAGAGAGTTG+GGG | - | chr2_4:509314-509333 | Msa0307550:CDS | 40.0% | |
CCCTGGATGCAAAAACTATA+AGG | - | chr2_4:509456-509475 | Msa0307550:intron | 40.0% | |
! | CCCTTATAGTTTTTGCATCC+AGG | + | chr2_4:509460-509479 | None:intergenic | 40.0% |
! | TGCTTTTCTAAATGGTCGTC+TGG | - | chr2_4:510141-510160 | Msa0307550:intron | 40.0% |
CTATCTCAGGCTGAAAATGT+TGG | - | chr2_4:510166-510185 | Msa0307550:intron | 40.0% | |
AAAATTGAGCTAGACATGCC+TGG | + | chr2_4:510246-510265 | None:intergenic | 40.0% | |
TTGGTTTCATCTATGGGTGT+TGG | - | chr2_4:510337-510356 | Msa0307550:intron | 40.0% | |
ATGCCACCTCTAGATTTGAA+TGG | - | chr2_4:510502-510521 | Msa0307550:intron | 40.0% | |
TGCCACCTCTAGATTTGAAT+GGG | - | chr2_4:510503-510522 | Msa0307550:intron | 40.0% | |
ATCCCATTCAAATCTAGAGG+TGG | + | chr2_4:510508-510527 | None:intergenic | 40.0% | |
TATGACAAGCTTCTGCAATC+TGG | - | chr2_4:510586-510605 | Msa0307550:intron | 40.0% | |
ATTTGTCATACAGTGCCCTT+AGG | - | chr2_4:510660-510679 | Msa0307550:intron | 40.0% | |
CTACACCTCTTACAACCTAA+GGG | + | chr2_4:510678-510697 | None:intergenic | 40.0% | |
TCTACACCTCTTACAACCTA+AGG | + | chr2_4:510679-510698 | None:intergenic | 40.0% | |
!! | TTGACTTGCCAACATTAGGA+CGG | + | chr2_4:510825-510844 | None:intergenic | 40.0% |
AGTCAAGCCTTCTTAATGCA+TGG | - | chr2_4:510839-510858 | Msa0307550:CDS | 40.0% | |
CTTTGCTCCATGCATTAAGA+AGG | + | chr2_4:510849-510868 | None:intergenic | 40.0% | |
ATGTTTGTGTGTTTGGGCAA+AGG | - | chr2_4:511039-511058 | Msa0307550:intron | 40.0% | |
TGTTTGTGTGTTTGGGCAAA+GGG | - | chr2_4:511040-511059 | Msa0307550:intron | 40.0% | |
CAGTATCAAGAAGGGTTATG+GGG | + | chr2_4:511225-511244 | None:intergenic | 40.0% | |
GCAGTATCAAGAAGGGTTAT+GGG | + | chr2_4:511226-511245 | None:intergenic | 40.0% | |
TGCAGTATCAAGAAGGGTTA+TGG | + | chr2_4:511227-511246 | None:intergenic | 40.0% | |
ATAACCCTTCTTGATACTGC+AGG | - | chr2_4:511226-511245 | Msa0307550:CDS | 40.0% | |
TAATCTGTACTGTATGCTGC+AGG | - | chr2_4:511303-511322 | Msa0307550:intron | 40.0% | |
ATCGCTCTACACCTATTAAG+AGG | + | chr2_4:511737-511756 | None:intergenic | 40.0% | |
TGAAAGGATTCAATCCGCTA+AGG | - | chr2_4:511842-511861 | Msa0307550:intron | 40.0% | |
GTCCCTAAAAAATAAAGCGG+GGG | - | chr2_4:511969-511988 | Msa0307550:intron | 40.0% | |
!!! | CATCCCCCGCTTTATTTTTT+AGG | + | chr2_4:511975-511994 | None:intergenic | 40.0% |
TATGGAAAGAGACATTCGAG+AGG | - | chr2_4:512339-512358 | Msa0307550:intron | 40.0% | |
TCAAGATAATGCTGCCTAGT+AGG | - | chr2_4:512372-512391 | Msa0307550:intron | 40.0% | |
ATTGAACTAGAAGAGTGGAG+TGG | - | chr2_4:512399-512418 | Msa0307550:intron | 40.0% | |
! | GCATCTAAGTGGCATTTTTG+AGG | + | chr2_4:512510-512529 | None:intergenic | 40.0% |
GTGTAACTCTAGCATCTAAG+TGG | + | chr2_4:512521-512540 | None:intergenic | 40.0% | |
!!! | GTTTTTGGTGCTTATGCTAC+AGG | + | chr2_4:512565-512584 | None:intergenic | 40.0% |
TTGTTGACCACAAGGATTAC+CGG | + | chr2_4:512744-512763 | None:intergenic | 40.0% | |
AGTCTTAGAGATTGTGGGTA+TGG | - | chr2_4:512887-512906 | Msa0307550:intron | 40.0% | |
TTAGAGATTGTGGGTATGGA+TGG | - | chr2_4:512891-512910 | Msa0307550:intron | 40.0% | |
GGAAGAATCAATTAGGCAGT+GGG | - | chr2_4:513019-513038 | Msa0307550:intron | 40.0% | |
GTCAAACAGATCAACACTTG+GGG | + | chr2_4:513200-513219 | None:intergenic | 40.0% | |
GTGTCAAACAGATCAACACT+TGG | + | chr2_4:513202-513221 | None:intergenic | 40.0% | |
TAATCTCACAAGTGCTTCCT+TGG | + | chr2_4:513263-513282 | None:intergenic | 40.0% | |
! | TTGTCACTTGGACAGATAAG+TGG | - | chr2_4:513346-513365 | Msa0307550:CDS | 40.0% |
! | TGTCACTTGGACAGATAAGT+GGG | - | chr2_4:513347-513366 | Msa0307550:CDS | 40.0% |
AAACCACTTAGCACCAAGTA+GGG | + | chr2_4:513447-513466 | None:intergenic | 40.0% | |
AAAACCACTTAGCACCAAGT+AGG | + | chr2_4:513448-513467 | None:intergenic | 40.0% | |
TGGAGTGAAGAAACGGTTGT+TGG | + | chr2_4:508405-508424 | None:intergenic | 45.0% | |
GCAGCCATTGTAACATCCTT+AGG | - | chr2_4:508584-508603 | Msa0307550:three_prime_UTR | 45.0% | |
GCCATTGTAACATCCTTAGG+CGG | - | chr2_4:508587-508606 | Msa0307550:three_prime_UTR | 45.0% | |
ACCGCCTAAGGATGTTACAA+TGG | + | chr2_4:508591-508610 | None:intergenic | 45.0% | |
CTCATCGACCACATTTCCAT+CGG | + | chr2_4:508747-508766 | None:intergenic | 45.0% | |
TGTGGTCGATGAGGTTATAG+CGG | - | chr2_4:508754-508773 | Msa0307550:CDS | 45.0% | |
!! | TACGACCTTGGTGCTAACAT+CGG | + | chr2_4:508782-508801 | None:intergenic | 45.0% |
TCTTCACGAGTATACGACCT+TGG | + | chr2_4:508794-508813 | None:intergenic | 45.0% | |
! | CTTAAGAAAAGCACACTCCG+AGG | + | chr2_4:509116-509135 | None:intergenic | 45.0% |
! | CTCGGAGTGTGCTTTTCTTA+AGG | - | chr2_4:509114-509133 | Msa0307550:intron | 45.0% |
! | TCTTTAGGTTCGAATCCTCC+AGG | - | chr2_4:509137-509156 | Msa0307550:intron | 45.0% |
CATGAATTGTTAGCACCTGG+AGG | + | chr2_4:509155-509174 | None:intergenic | 45.0% | |
TTTAATTGGGCCCCCATTAG+TGG | - | chr2_4:509209-509228 | Msa0307550:CDS | 45.0% | |
TGGTCCAATCGTCCACTAAT+GGG | + | chr2_4:509224-509243 | None:intergenic | 45.0% | |
TGTTATCTTCTTGGACAGGG+TGG | - | chr2_4:510394-510413 | Msa0307550:intron | 45.0% | |
GCTTCTGCAATCTGGATTAC+AGG | - | chr2_4:510594-510613 | Msa0307550:intron | 45.0% | |
ATTGTTGGCCGTCCTAATGT+TGG | - | chr2_4:510814-510833 | Msa0307550:CDS | 45.0% | |
!! | AGGCTTGACTTGCCAACATT+AGG | + | chr2_4:510829-510848 | None:intergenic | 45.0% |
GATGCCTGCAGTATCAAGAA+GGG | + | chr2_4:511233-511252 | None:intergenic | 45.0% | |
TGATGCCTGCAGTATCAAGA+AGG | + | chr2_4:511234-511253 | None:intergenic | 45.0% | |
TTCTTGATACTGCAGGCATC+AGG | - | chr2_4:511233-511252 | Msa0307550:CDS | 45.0% | |
TCTTGATACTGCAGGCATCA+GGG | - | chr2_4:511234-511253 | Msa0307550:CDS | 45.0% | |
! | CAAAACACTGATGGACATGC+AGG | + | chr2_4:511681-511700 | None:intergenic | 45.0% |
GAGACATTCGAGAGGAATGT+TGG | - | chr2_4:512347-512366 | Msa0307550:intron | 45.0% | |
CTAGTTCAATGCTGCCTACT+AGG | + | chr2_4:512389-512408 | None:intergenic | 45.0% | |
! | GCAGCATTGAACTAGAAGAG+TGG | - | chr2_4:512394-512413 | Msa0307550:intron | 45.0% |
CTGTAACGACAGGAATCAAC+TGG | - | chr2_4:512708-512727 | Msa0307550:intron | 45.0% | |
ATCAACTGGATCTTCAACCC+CGG | - | chr2_4:512722-512741 | Msa0307550:intron | 45.0% | |
TGTTGACCACAAGGATTACC+GGG | + | chr2_4:512743-512762 | None:intergenic | 45.0% | |
ACATGTGCTGTAACCAGTCA+AGG | - | chr2_4:512843-512862 | Msa0307550:intron | 45.0% | |
AGGGCAGTCTTAGAGATTGT+GGG | - | chr2_4:512882-512901 | Msa0307550:intron | 45.0% | |
GGGAAGAATCAATTAGGCAG+TGG | - | chr2_4:513018-513037 | Msa0307550:intron | 45.0% | |
ATCAACACTTGGGGCATGTT+TGG | + | chr2_4:513191-513210 | None:intergenic | 45.0% | |
! | TGAACAACTTGTTCGGACCA+AGG | - | chr2_4:513243-513262 | Msa0307550:CDS | 45.0% |
GTCACTTGGACAGATAAGTG+GGG | - | chr2_4:513348-513367 | Msa0307550:CDS | 45.0% | |
AAGTGGGGAAGATATATCCG+AGG | - | chr2_4:513363-513382 | Msa0307550:CDS | 45.0% | |
AATACAGTTCCCTCCCTACT+TGG | - | chr2_4:513431-513450 | Msa0307550:CDS | 45.0% | |
! | ATTCATGGAGGTACGTGTAC+TGG | + | chr2_4:513507-513526 | None:intergenic | 45.0% |
AAAAGGCAGAACCAGAGCGA+TGG | - | chr2_4:508325-508344 | Msa0307550:three_prime_UTR | 50.0% | |
GCGGAAAGAAGACATAGCCA+TGG | + | chr2_4:508351-508370 | None:intergenic | 50.0% | |
CGAAAGACGAACGATTCCGA+CGG | + | chr2_4:508624-508643 | None:intergenic | 50.0% | |
CGTCGGAATCGTTCGTCTTT+CGG | - | chr2_4:508622-508641 | Msa0307550:three_prime_UTR | 50.0% | |
GTCGGAATCGTTCGTCTTTC+GGG | - | chr2_4:508623-508642 | Msa0307550:three_prime_UTR | 50.0% | |
!!! | GGTGTCGTTTTGGATTCCGA+TGG | - | chr2_4:508728-508747 | Msa0307550:CDS | 50.0% |
CGATGGAAATGTGGTCGATG+AGG | - | chr2_4:508745-508764 | Msa0307550:CDS | 50.0% | |
TGTGTTTGCGTCGTGTGCTT+AGG | - | chr2_4:508846-508865 | Msa0307550:intron | 50.0% | |
GTCCAATCGTCCACTAATGG+GGG | + | chr2_4:509222-509241 | None:intergenic | 50.0% | |
GGTCCAATCGTCCACTAATG+GGG | + | chr2_4:509223-509242 | None:intergenic | 50.0% | |
CTGGTCCAATCGTCCACTAA+TGG | + | chr2_4:509225-509244 | None:intergenic | 50.0% | |
ATGGAGGGTAGTCAAATCCC+TGG | - | chr2_4:509439-509458 | Msa0307550:intron | 50.0% | |
CTTATCCCACGAAGTGGAGT+CGG | + | chr2_4:509578-509597 | None:intergenic | 50.0% | |
! | CCAAGTCTTATCCCACGAAG+TGG | + | chr2_4:509584-509603 | None:intergenic | 50.0% |
CCACTTCGTGGGATAAGACT+TGG | - | chr2_4:509581-509600 | Msa0307550:intron | 50.0% | |
TGGTCGTCTGGATCTATCTC+AGG | - | chr2_4:510153-510172 | Msa0307550:intron | 50.0% | |
ACTGATTGCGGCCAAATCTG+TGG | - | chr2_4:510192-510211 | Msa0307550:intron | 50.0% | |
ATCAGCAGCAGCCACAGATT+TGG | + | chr2_4:510206-510225 | None:intergenic | 50.0% | |
! | CAGTGCCCTTAGGTTGTAAG+AGG | - | chr2_4:510670-510689 | Msa0307550:intron | 50.0% |
CAGGGACACTGATGACATTG+TGG | - | chr2_4:511252-511271 | Msa0307550:CDS | 50.0% | |
! | ATGGCTGTGAGTGCTGTTGA+AGG | - | chr2_4:511792-511811 | Msa0307550:intron | 50.0% |
! | TGGCTGTGAGTGCTGTTGAA+GGG | - | chr2_4:511793-511812 | Msa0307550:intron | 50.0% |
CTAGAAGAGTGGAGTGGACA+TGG | - | chr2_4:512405-512424 | Msa0307550:intron | 50.0% | |
TTCAACCCCGGTAATCCTTG+TGG | - | chr2_4:512734-512753 | Msa0307550:intron | 50.0% | |
GTTGACCACAAGGATTACCG+GGG | + | chr2_4:512742-512761 | None:intergenic | 50.0% | |
! | AGCCTTGTGCAGAGACTGAA+TGG | - | chr2_4:512775-512794 | Msa0307550:intron | 50.0% |
GCCTTGTGCAGAGACTGAAT+GGG | - | chr2_4:512776-512795 | Msa0307550:intron | 50.0% | |
TCCCATTCAGTCTCTGCACA+AGG | + | chr2_4:512780-512799 | None:intergenic | 50.0% | |
GCAGAGACTGAATGGGACAA+AGG | - | chr2_4:512783-512802 | Msa0307550:intron | 50.0% | |
GAGGGCAGTCTTAGAGATTG+TGG | - | chr2_4:512881-512900 | Msa0307550:intron | 50.0% | |
GTATGGATGGCATTGCTGCT+GGG | - | chr2_4:512904-512923 | Msa0307550:intron | 50.0% | |
TATGGATGGCATTGCTGCTG+GGG | - | chr2_4:512905-512924 | Msa0307550:intron | 50.0% | |
ACACTTGGGGCATGTTTGGT+TGG | + | chr2_4:513187-513206 | None:intergenic | 50.0% | |
AGGGATGCTGCATTGTCACT+TGG | - | chr2_4:513334-513353 | Msa0307550:CDS | 50.0% | |
TGGGGAAGATATATCCGAGG+AGG | - | chr2_4:513366-513385 | Msa0307550:CDS | 50.0% | |
CACTTAGCACCAAGTAGGGA+GGG | + | chr2_4:513443-513462 | None:intergenic | 50.0% | |
AAGAAGAGAGTGACGCCACG+TGG | + | chr2_4:508438-508457 | None:intergenic | 55.0% | |
AAGACGAACGATTCCGACGG+CGG | + | chr2_4:508621-508640 | None:intergenic | 55.0% | |
GGAGCAACACTTGCTCAACC+AGG | - | chr2_4:508884-508903 | Msa0307550:intron | 55.0% | |
! | ATGTAGCCGACTCCACTTCG+TGG | - | chr2_4:509569-509588 | Msa0307550:intron | 55.0% |
! | TGTAGCCGACTCCACTTCGT+GGG | - | chr2_4:509570-509589 | Msa0307550:intron | 55.0% |
! | TGCAGCACTGGAAGGAATCC+AGG | - | chr2_4:510225-510244 | Msa0307550:intron | 55.0% |
! | CGATCTGAAGCTGCTGCTAG+AGG | - | chr2_4:511753-511772 | Msa0307550:intron | 55.0% |
! | CTGTGAGTGCTGTTGAAGGG+TGG | - | chr2_4:511796-511815 | Msa0307550:intron | 55.0% |
GGTATGGATGGCATTGCTGC+TGG | - | chr2_4:512903-512922 | Msa0307550:intron | 55.0% | |
ATGGATGGCATTGCTGCTGG+GGG | - | chr2_4:512906-512925 | Msa0307550:intron | 55.0% | |
TCGCAGATGGACCGTCAATC+AGG | - | chr2_4:512929-512948 | Msa0307550:intron | 55.0% | |
CCACTTAGCACCAAGTAGGG+AGG | + | chr2_4:513444-513463 | None:intergenic | 55.0% | |
!! | CCTCCCTACTTGGTGCTAAG+TGG | - | chr2_4:513441-513460 | Msa0307550:CDS | 55.0% |
CAGAACCAGAGCGATGGCCA+TGG | - | chr2_4:508331-508350 | Msa0307550:three_prime_UTR | 60.0% | |
CATAGCCATGGCCATCGCTC+TGG | + | chr2_4:508339-508358 | None:intergenic | 60.0% | |
AAGAGAGTGACGCCACGTGG+CGG | + | chr2_4:508435-508454 | None:intergenic | 60.0% | |
TCCGACCCGCGAGAAACATG+TGG | - | chr2_4:508678-508697 | Msa0307550:CDS | 60.0% | |
GCCACATGTTTCTCGCGGGT+CGG | + | chr2_4:508682-508701 | None:intergenic | 60.0% | |
GACCCGCGAGAAACATGTGG+CGG | - | chr2_4:508681-508700 | Msa0307550:CDS | 60.0% | |
AGGCCGCCACATGTTTCTCG+CGG | + | chr2_4:508687-508706 | None:intergenic | 60.0% | |
!! | CGGTGCCGATGTTAGCACCA+AGG | - | chr2_4:508774-508793 | Msa0307550:CDS | 60.0% |
! | GGCCCCCATTAGTGGACGAT+TGG | - | chr2_4:509217-509236 | Msa0307550:CDS | 60.0% |
! | GCTGCTGATGCAGCACTGGA+AGG | - | chr2_4:510217-510236 | Msa0307550:intron | 60.0% |
CTCCACCAACTACCGCCACG+TGG | - | chr2_4:508420-508439 | Msa0307550:three_prime_UTR | 65.0% | |
TGACGCCACGTGGCGGTAGT+TGG | + | chr2_4:508428-508447 | None:intergenic | 65.0% | |
AACGATTCCGACGGCGGCAG+GGG | + | chr2_4:508615-508634 | None:intergenic | 65.0% | |
GAACGATTCCGACGGCGGCA+GGG | + | chr2_4:508616-508635 | None:intergenic | 65.0% | |
! | TCGTCTTTCGGGTCCGCACG+CGG | - | chr2_4:508634-508653 | Msa0307550:three_prime_UTR | 65.0% |
TCCGCACGCGGTGTCTATCG+CGG | - | chr2_4:508646-508665 | Msa0307550:exon | 65.0% | |
GGCCGCCACATGTTTCTCGC+GGG | + | chr2_4:508686-508705 | None:intergenic | 65.0% | |
GGCTGCTGCTGATGCAGCAC+TGG | - | chr2_4:510213-510232 | Msa0307550:intron | 65.0% | |
TTGCTGCTGGGGGTCGCAGA+TGG | - | chr2_4:512916-512935 | Msa0307550:intron | 65.0% | |
CGCCACGTGGCGGTAGTTGG+TGG | + | chr2_4:508425-508444 | None:intergenic | 70.0% | |
ACGATTCCGACGGCGGCAGG+GGG | + | chr2_4:508614-508633 | None:intergenic | 70.0% | |
CGAACGATTCCGACGGCGGC+AGG | + | chr2_4:508617-508636 | None:intergenic | 70.0% | |
CCCGCGATAGACACCGCGTG+CGG | + | chr2_4:508650-508669 | None:intergenic | 70.0% | |
CCGCACGCGGTGTCTATCGC+GGG | - | chr2_4:508647-508666 | Msa0307550:exon | 70.0% | |
! | GGCGGCAGGGGGACCGCCTA+AGG | + | chr2_4:508603-508622 | None:intergenic | 80.0% |
! | GGCGGTCCCCCTGCCGCCGT+CGG | - | chr2_4:508605-508624 | Msa0307550:three_prime_UTR | 85.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_4 | gene | 508302 | 513791 | 508302 | ID=Msa0307550;Name=Msa0307550 |
chr2_4 | mRNA | 508302 | 513791 | 508302 | ID=Msa0307550-mRNA-1;Parent=Msa0307550;Name=Msa0307550-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.42|0.62|1|0.57|0.62|8|362|505 |
chr2_4 | exon | 508302 | 508858 | 508302 | ID=Msa0307550-mRNA-1:exon:275;Parent=Msa0307550-mRNA-1 |
chr2_4 | exon | 509143 | 509373 | 509143 | ID=Msa0307550-mRNA-1:exon:274;Parent=Msa0307550-mRNA-1 |
chr2_4 | exon | 510296 | 510342 | 510296 | ID=Msa0307550-mRNA-1:exon:273;Parent=Msa0307550-mRNA-1 |
chr2_4 | exon | 510810 | 510948 | 510810 | ID=Msa0307550-mRNA-1:exon:272;Parent=Msa0307550-mRNA-1 |
chr2_4 | exon | 511226 | 511285 | 511226 | ID=Msa0307550-mRNA-1:exon:271;Parent=Msa0307550-mRNA-1 |
chr2_4 | exon | 511478 | 511681 | 511478 | ID=Msa0307550-mRNA-1:exon:270;Parent=Msa0307550-mRNA-1 |
chr2_4 | exon | 511883 | 511968 | 511883 | ID=Msa0307550-mRNA-1:exon:269;Parent=Msa0307550-mRNA-1 |
chr2_4 | exon | 513236 | 513791 | 513236 | ID=Msa0307550-mRNA-1:exon:268;Parent=Msa0307550-mRNA-1 |
chr2_4 | CDS | 513236 | 513791 | 513236 | ID=Msa0307550-mRNA-1:cds;Parent=Msa0307550-mRNA-1 |
chr2_4 | CDS | 511883 | 511968 | 511883 | ID=Msa0307550-mRNA-1:cds;Parent=Msa0307550-mRNA-1 |
chr2_4 | CDS | 511478 | 511681 | 511478 | ID=Msa0307550-mRNA-1:cds;Parent=Msa0307550-mRNA-1 |
chr2_4 | CDS | 511226 | 511285 | 511226 | ID=Msa0307550-mRNA-1:cds;Parent=Msa0307550-mRNA-1 |
chr2_4 | CDS | 510810 | 510948 | 510810 | ID=Msa0307550-mRNA-1:cds;Parent=Msa0307550-mRNA-1 |
chr2_4 | CDS | 510296 | 510342 | 510296 | ID=Msa0307550-mRNA-1:cds;Parent=Msa0307550-mRNA-1 |
chr2_4 | CDS | 509143 | 509373 | 509143 | ID=Msa0307550-mRNA-1:cds;Parent=Msa0307550-mRNA-1 |
chr2_4 | CDS | 508664 | 508858 | 508664 | ID=Msa0307550-mRNA-1:cds;Parent=Msa0307550-mRNA-1 |
chr2_4 | three_prime_UTR | 508302 | 508663 | 508302 | ID=Msa0307550-mRNA-1:three_prime_utr;Parent=Msa0307550-mRNA-1 |
Gene Sequence |
Protein sequence |