AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0178940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0178940 MtrunA17_Chr1g0208171 96.552 145 5 0 1 145 1 145 8.26e-99 280
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0178940 AT4G34190.1 56.849 146 60 2 3 145 1 146 1.01e-47 151

Find 58 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACTTGGATTCATCCAATTA+AGG 0.253614 1_4:-66383656 None:intergenic
AAGAATAGGTAGAGATAATA+AGG 0.255478 1_4:+66381510 Msa0178940:five_prime_UTR
GGTAGAGATAATAAGGAAAA+AGG 0.272630 1_4:+66381517 Msa0178940:five_prime_UTR
TGCTCGCATCTTATCGAAAC+TGG 0.316015 1_4:-66382739 None:intergenic
ATTACTGTTGAAATTACTTC+TGG 0.319891 1_4:+66382832 Msa0178940:CDS
GCAGGAACCAAAGTTGGTTT+AGG 0.337277 1_4:-66381791 None:intergenic
ATGGGAATGGTTTGGATGTA+TGG 0.340421 1_4:+66382773 Msa0178940:CDS
TGATCCGGTGCAATCATAAA+AGG 0.356228 1_4:+66382695 Msa0178940:CDS
GGAAATTGAGCAGAGGTTGC+AGG 0.362163 1_4:-66381770 None:intergenic
ACAGTTGCCTTGGCCGTAAC+AGG 0.365155 1_4:+66383428 Msa0178940:CDS
TCAATTTCCTAAACCAACTT+TGG 0.392958 1_4:+66381784 Msa0178940:CDS
GTAAATTCTGTAGTTTCAAA+TGG 0.416774 1_4:+66383534 Msa0178940:three_prime_UTR
GCTAGAGCATCCTTTGCAAC+TGG 0.420563 1_4:+66381812 Msa0178940:CDS
GTTGAAATTACTTCTGGAAA+GGG 0.425412 1_4:+66382838 Msa0178940:CDS
ATCAGTTCTCTGAGGCTGAC+TGG 0.425625 1_4:-66383484 None:intergenic
CACCAAGGATGGGAATGGTT+TGG 0.434352 1_4:+66382765 Msa0178940:CDS
TCTCTTTCTGTCTCTCTTCG+TGG 0.434411 1_4:+66381609 Msa0178940:CDS
GTTTGGATGTATGGCTTGGC+CGG 0.436498 1_4:+66382782 Msa0178940:CDS
AGAGAACTGATTAAATATTC+AGG 0.439616 1_4:+66383496 Msa0178940:exon
CATCCGTTGTTCAAAAGAAT+AGG 0.464135 1_4:+66381496 Msa0178940:five_prime_UTR
AGAAGTAATTTCAACAGTAA+TGG 0.474215 1_4:-66382830 None:intergenic
ATCCAAACCATTCCCATCCT+TGG 0.477285 1_4:-66382767 None:intergenic
GCTCTAGCAGGAACCAAAGT+TGG 0.477360 1_4:-66381797 None:intergenic
CTTGGCCGGGTAGCCATGGT+TGG 0.479318 1_4:+66382796 Msa0178940:CDS
AATTAGAAAAGTTACTTAGT+GGG 0.486476 1_4:-66381838 None:intergenic
TGCGAGCAAAACACCAAGGA+TGG 0.496748 1_4:+66382754 Msa0178940:CDS
GACACCCACCAGTCCTGTTA+CGG 0.499084 1_4:-66383441 None:intergenic
TGCCTTGGCCGTAACAGGAC+TGG 0.500300 1_4:+66383433 Msa0178940:CDS
TGTTGAAATTACTTCTGGAA+AGG 0.500335 1_4:+66382837 Msa0178940:CDS
TCCACTGCCTACAGTTGCCT+TGG 0.503726 1_4:+66383418 Msa0178940:CDS
CACCAGTCCTGTTACGGCCA+AGG 0.507970 1_4:-66383435 None:intergenic
GAAATTGAGCAGAGGTTGCA+GGG 0.522794 1_4:-66381769 None:intergenic
TTGACTTGTCTATAGTGATC+CGG 0.529839 1_4:+66382680 Msa0178940:intron
AATGGTTTGGATGTATGGCT+TGG 0.533407 1_4:+66382778 Msa0178940:CDS
TTTGGATGTATGGCTTGGCC+GGG 0.539562 1_4:+66382783 Msa0178940:CDS
GTTGCAAAGGATGCTCTAGC+AGG 0.542909 1_4:-66381809 None:intergenic
CAAAACCAACCATGGCTACC+CGG 0.549263 1_4:-66382801 None:intergenic
AACTGATTAAATATTCAGGC+TGG 0.550822 1_4:+66383500 Msa0178940:exon
AGAGACAGAAAGAGAAGCAG+AGG 0.554751 1_4:-66381601 None:intergenic
GCCAAGGCAACTGTAGGCAG+TGG 0.574143 1_4:-66383419 None:intergenic
ATTAGAAAAGTTACTTAGTG+GGG 0.581454 1_4:-66381837 None:intergenic
CAAAACACCAAGGATGGGAA+TGG 0.585365 1_4:+66382760 Msa0178940:CDS
CTTGGCCGTAACAGGACTGG+TGG 0.598603 1_4:+66383436 Msa0178940:CDS
ATGGCTTGGCCGGGTAGCCA+TGG 0.601341 1_4:+66382792 Msa0178940:CDS
TAGTGGGGAACCAGTTGCAA+AGG 0.603632 1_4:-66381822 None:intergenic
TGGTTTAGGAAATTGAGCAG+AGG 0.606409 1_4:-66381777 None:intergenic
GCGAGCAAAACACCAAGGAT+GGG 0.611407 1_4:+66382755 Msa0178940:CDS
TGATGAGTCAGAGATATGAA+TGG 0.612820 1_4:+66381462 Msa0178940:five_prime_UTR
GTTACGGCCAAGGCAACTGT+AGG 0.623177 1_4:-66383425 None:intergenic
GGCCACTGCAAAACCAACCA+TGG 0.623933 1_4:-66382809 None:intergenic
TTCTGGAAAGGGACTCCTAG+AGG 0.632552 1_4:+66382849 Msa0178940:CDS
GAACAACGGATGATGAAACA+TGG 0.633626 1_4:-66381485 None:intergenic
ATAACTTACTTCGTCAACCA+TGG 0.636574 1_4:+66381560 Msa0178940:exon
TTGAGCTTGAGCAAGTGCCA+TGG 0.644960 1_4:-66381577 None:intergenic
TTGGCCGTAACAGGACTGGT+GGG 0.657190 1_4:+66383437 Msa0178940:CDS
AATATTTAATCAGTTCTCTG+AGG 0.658496 1_4:-66383492 None:intergenic
CTGACTCATCAACGCTAACG+TGG 0.669926 1_4:-66381450 None:intergenic
AAGATGCGAGCAAAACACCA+AGG 0.726429 1_4:+66382750 Msa0178940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATTATTAATTTTTTAA+AGG + chr1_4:66381873-66381892 Msa0178940:intron 0.0%
!!! TATTATTATTAATTTTTTAA+AGG + chr1_4:66381873-66381892 Msa0178940:intron 0.0%
!! TCTCAAAAAAAAAAAAAAAA+TGG - chr1_4:66381661-66381680 None:intergenic 10.0%
!! ATAAAAAATAAATGATCTAT+AGG + chr1_4:66382084-66382103 Msa0178940:intron 10.0%
!! TCTCAAAAAAAAAAAAAAAA+TGG - chr1_4:66381661-66381680 None:intergenic 10.0%
!! ATAAAAAATAAATGATCTAT+AGG + chr1_4:66382084-66382103 Msa0178940:intron 10.0%
!! AAAAAAAAAAAAATGGAACA+GGG - chr1_4:66381654-66381673 None:intergenic 15.0%
!! AAAAAAAAAAAAAATGGAAC+AGG - chr1_4:66381655-66381674 None:intergenic 15.0%
!!! TTTTCTTGTAATATTATTCT+TGG + chr1_4:66383591-66383610 Msa0178940:three_prime_UTR 15.0%
!!! CATTAATCATGTTAAATTTT+TGG + chr1_4:66383630-66383649 Msa0178940:three_prime_UTR 15.0%
!! AAAAAAAAAAAAATGGAACA+GGG - chr1_4:66381654-66381673 None:intergenic 15.0%
!! AAAAAAAAAAAAAATGGAAC+AGG - chr1_4:66381655-66381674 None:intergenic 15.0%
!!! TTTTCTTGTAATATTATTCT+TGG + chr1_4:66383591-66383610 Msa0178940:three_prime_UTR 15.0%
!!! CATTAATCATGTTAAATTTT+TGG + chr1_4:66383630-66383649 Msa0178940:three_prime_UTR 15.0%
!! AAAAAAAAAAAATGGAACAG+GGG - chr1_4:66381653-66381672 None:intergenic 20.0%
!! AATTAGAAAAGTTACTTAGT+GGG - chr1_4:66381841-66381860 None:intergenic 20.0%
!! TCTAAAAGCCAATATAATAT+CGG - chr1_4:66381952-66381971 None:intergenic 20.0%
!!! AATTTCATTTTGTAGTATGA+GGG + chr1_4:66381971-66381990 Msa0178940:intron 20.0%
!!! AATTAAAATGAGTGTCATTT+AGG - chr1_4:66382404-66382423 None:intergenic 20.0%
!!! AAATGACACTCATTTTAATT+CGG + chr1_4:66382404-66382423 Msa0178940:intron 20.0%
!! TTATTCTTGGTAAAAAGAAT+TGG + chr1_4:66383604-66383623 Msa0178940:three_prime_UTR 20.0%
!! AAAAAAAAAAAATGGAACAG+GGG - chr1_4:66381653-66381672 None:intergenic 20.0%
!! AATTAGAAAAGTTACTTAGT+GGG - chr1_4:66381841-66381860 None:intergenic 20.0%
!! TCTAAAAGCCAATATAATAT+CGG - chr1_4:66381952-66381971 None:intergenic 20.0%
!!! AATTTCATTTTGTAGTATGA+GGG + chr1_4:66381971-66381990 Msa0178940:intron 20.0%
!!! AATTAAAATGAGTGTCATTT+AGG - chr1_4:66382404-66382423 None:intergenic 20.0%
!!! AAATGACACTCATTTTAATT+CGG + chr1_4:66382404-66382423 Msa0178940:intron 20.0%
!! TTATTCTTGGTAAAAAGAAT+TGG + chr1_4:66383604-66383623 Msa0178940:three_prime_UTR 20.0%
! AAGAATAGGTAGAGATAATA+AGG + chr1_4:66381510-66381529 Msa0178940:five_prime_UTR 25.0%
! ATTAGAAAAGTTACTTAGTG+GGG - chr1_4:66381840-66381859 None:intergenic 25.0%
! GAATTAGAAAAGTTACTTAG+TGG - chr1_4:66381842-66381861 None:intergenic 25.0%
!! GAATTTCATTTTGTAGTATG+AGG + chr1_4:66381970-66381989 Msa0178940:intron 25.0%
!! GTAATTAGTAGTACTACTTT+TGG + chr1_4:66382024-66382043 Msa0178940:intron 25.0%
!!! AATGACACTCATTTTAATTC+GGG + chr1_4:66382405-66382424 Msa0178940:intron 25.0%
! TATTATACTATAGCATCGTT+TGG + chr1_4:66382444-66382463 Msa0178940:intron 25.0%
! TAATCTTATACAATAAGACG+CGG + chr1_4:66382476-66382495 Msa0178940:intron 25.0%
!! AGATTAACTTCATAGTCTTA+GGG - chr1_4:66382552-66382571 None:intergenic 25.0%
! TAGATTAACTTCATAGTCTT+AGG - chr1_4:66382553-66382572 None:intergenic 25.0%
! TTGTTGAAATAAGATTCGTT+AGG + chr1_4:66382643-66382662 Msa0178940:intron 25.0%
! AGAAGTAATTTCAACAGTAA+TGG - chr1_4:66382833-66382852 None:intergenic 25.0%
! ATTACTGTTGAAATTACTTC+TGG + chr1_4:66382832-66382851 Msa0178940:CDS 25.0%
!! TCCATCAAATGATTGATAAT+TGG + chr1_4:66382973-66382992 Msa0178940:intron 25.0%
! AAACGTAATAAAGTTCGTTA+CGG - chr1_4:66383271-66383290 None:intergenic 25.0%
! AATATTTAATCAGTTCTCTG+AGG - chr1_4:66383495-66383514 None:intergenic 25.0%
! AGAGAACTGATTAAATATTC+AGG + chr1_4:66383496-66383515 Msa0178940:exon 25.0%
! GTAAATTCTGTAGTTTCAAA+TGG + chr1_4:66383534-66383553 Msa0178940:three_prime_UTR 25.0%
!!! AAATTTTTGGAAGCCTTAAT+TGG + chr1_4:66383643-66383662 Msa0178940:three_prime_UTR 25.0%
!!! ACAAAAAATAAGCATTGACT+TGG - chr1_4:66383675-66383694 None:intergenic 25.0%
! AAGAATAGGTAGAGATAATA+AGG + chr1_4:66381510-66381529 Msa0178940:five_prime_UTR 25.0%
! ATTAGAAAAGTTACTTAGTG+GGG - chr1_4:66381840-66381859 None:intergenic 25.0%
! GAATTAGAAAAGTTACTTAG+TGG - chr1_4:66381842-66381861 None:intergenic 25.0%
!! GAATTTCATTTTGTAGTATG+AGG + chr1_4:66381970-66381989 Msa0178940:intron 25.0%
!! GTAATTAGTAGTACTACTTT+TGG + chr1_4:66382024-66382043 Msa0178940:intron 25.0%
!!! AATGACACTCATTTTAATTC+GGG + chr1_4:66382405-66382424 Msa0178940:intron 25.0%
! TATTATACTATAGCATCGTT+TGG + chr1_4:66382444-66382463 Msa0178940:intron 25.0%
! TAATCTTATACAATAAGACG+CGG + chr1_4:66382476-66382495 Msa0178940:intron 25.0%
!! AGATTAACTTCATAGTCTTA+GGG - chr1_4:66382552-66382571 None:intergenic 25.0%
! TAGATTAACTTCATAGTCTT+AGG - chr1_4:66382553-66382572 None:intergenic 25.0%
! TTGTTGAAATAAGATTCGTT+AGG + chr1_4:66382643-66382662 Msa0178940:intron 25.0%
! AGAAGTAATTTCAACAGTAA+TGG - chr1_4:66382833-66382852 None:intergenic 25.0%
! ATTACTGTTGAAATTACTTC+TGG + chr1_4:66382832-66382851 Msa0178940:CDS 25.0%
!! TCCATCAAATGATTGATAAT+TGG + chr1_4:66382973-66382992 Msa0178940:intron 25.0%
! AAACGTAATAAAGTTCGTTA+CGG - chr1_4:66383271-66383290 None:intergenic 25.0%
! AATATTTAATCAGTTCTCTG+AGG - chr1_4:66383495-66383514 None:intergenic 25.0%
! AGAGAACTGATTAAATATTC+AGG + chr1_4:66383496-66383515 Msa0178940:exon 25.0%
! GTAAATTCTGTAGTTTCAAA+TGG + chr1_4:66383534-66383553 Msa0178940:three_prime_UTR 25.0%
!!! AAATTTTTGGAAGCCTTAAT+TGG + chr1_4:66383643-66383662 Msa0178940:three_prime_UTR 25.0%
!!! ACAAAAAATAAGCATTGACT+TGG - chr1_4:66383675-66383694 None:intergenic 25.0%
! CTACCTATTCTTTTGAACAA+CGG - chr1_4:66381502-66381521 None:intergenic 30.0%
GGTAGAGATAATAAGGAAAA+AGG + chr1_4:66381517-66381536 Msa0178940:five_prime_UTR 30.0%
ATTGAGTGCTACAATAGAAA+TGG - chr1_4:66381697-66381716 None:intergenic 30.0%
TCAATTTCCTAAACCAACTT+TGG + chr1_4:66381784-66381803 Msa0178940:CDS 30.0%
GTAGACTACCGATATTATAT+TGG + chr1_4:66381941-66381960 Msa0178940:intron 30.0%
GTACTACTAATTACAAGCAA+AGG - chr1_4:66382018-66382037 None:intergenic 30.0%
!! TGCAGATTTTGCTATAGAAT+GGG - chr1_4:66382115-66382134 None:intergenic 30.0%
!! ATGCAGATTTTGCTATAGAA+TGG - chr1_4:66382116-66382135 None:intergenic 30.0%
!!! ATGACTGAGTTCTTTGTTTT+TGG + chr1_4:66382318-66382337 Msa0178940:intron 30.0%
! AATTCGGGTTTATTCACATT+TGG + chr1_4:66382420-66382439 Msa0178940:intron 30.0%
! GATTAACTTCATAGTCTTAG+GGG - chr1_4:66382551-66382570 None:intergenic 30.0%
! TGTTGAAATTACTTCTGGAA+AGG + chr1_4:66382837-66382856 Msa0178940:CDS 30.0%
! GTTGAAATTACTTCTGGAAA+GGG + chr1_4:66382838-66382857 Msa0178940:CDS 30.0%
GTAACTCAAAGTTTACGTTA+TGG - chr1_4:66382887-66382906 None:intergenic 30.0%
GCCAATTATCAATCATTTGA+TGG - chr1_4:66382977-66382996 None:intergenic 30.0%
!! ACATTTGAGTTTTGGCAAAT+GGG - chr1_4:66383024-66383043 None:intergenic 30.0%
!! AACATTTGAGTTTTGGCAAA+TGG - chr1_4:66383025-66383044 None:intergenic 30.0%
!! CAAAGCAAACATTTGAGTTT+TGG - chr1_4:66383032-66383051 None:intergenic 30.0%
CAAAACTCAAATGTTTGCTT+TGG + chr1_4:66383030-66383049 Msa0178940:intron 30.0%
!!! TTGGTATTTTAGCTGCAATA+TGG + chr1_4:66383049-66383068 Msa0178940:intron 30.0%
CACTATAAAGTAAAGGAGAA+AGG - chr1_4:66383082-66383101 None:intergenic 30.0%
CCATACACACTATAAAGTAA+AGG - chr1_4:66383089-66383108 None:intergenic 30.0%
CCTTTACTTTATAGTGTGTA+TGG + chr1_4:66383086-66383105 Msa0178940:intron 30.0%
! GATCTTTTAAGCTATTGAGT+TGG + chr1_4:66383145-66383164 Msa0178940:intron 30.0%
!! ACTTTGATTTTGCAGAACTT+TGG + chr1_4:66383386-66383405 Msa0178940:intron 30.0%
AACTGATTAAATATTCAGGC+TGG + chr1_4:66383500-66383519 Msa0178940:exon 30.0%
! CTACCTATTCTTTTGAACAA+CGG - chr1_4:66381502-66381521 None:intergenic 30.0%
GGTAGAGATAATAAGGAAAA+AGG + chr1_4:66381517-66381536 Msa0178940:five_prime_UTR 30.0%
ATTGAGTGCTACAATAGAAA+TGG - chr1_4:66381697-66381716 None:intergenic 30.0%
TCAATTTCCTAAACCAACTT+TGG + chr1_4:66381784-66381803 Msa0178940:CDS 30.0%
GTAGACTACCGATATTATAT+TGG + chr1_4:66381941-66381960 Msa0178940:intron 30.0%
GTACTACTAATTACAAGCAA+AGG - chr1_4:66382018-66382037 None:intergenic 30.0%
!! TGCAGATTTTGCTATAGAAT+GGG - chr1_4:66382115-66382134 None:intergenic 30.0%
!! ATGCAGATTTTGCTATAGAA+TGG - chr1_4:66382116-66382135 None:intergenic 30.0%
!!! ATGACTGAGTTCTTTGTTTT+TGG + chr1_4:66382318-66382337 Msa0178940:intron 30.0%
! AATTCGGGTTTATTCACATT+TGG + chr1_4:66382420-66382439 Msa0178940:intron 30.0%
! GATTAACTTCATAGTCTTAG+GGG - chr1_4:66382551-66382570 None:intergenic 30.0%
! TGTTGAAATTACTTCTGGAA+AGG + chr1_4:66382837-66382856 Msa0178940:CDS 30.0%
! GTTGAAATTACTTCTGGAAA+GGG + chr1_4:66382838-66382857 Msa0178940:CDS 30.0%
GTAACTCAAAGTTTACGTTA+TGG - chr1_4:66382887-66382906 None:intergenic 30.0%
GCCAATTATCAATCATTTGA+TGG - chr1_4:66382977-66382996 None:intergenic 30.0%
!! ACATTTGAGTTTTGGCAAAT+GGG - chr1_4:66383024-66383043 None:intergenic 30.0%
!! AACATTTGAGTTTTGGCAAA+TGG - chr1_4:66383025-66383044 None:intergenic 30.0%
!! CAAAGCAAACATTTGAGTTT+TGG - chr1_4:66383032-66383051 None:intergenic 30.0%
CAAAACTCAAATGTTTGCTT+TGG + chr1_4:66383030-66383049 Msa0178940:intron 30.0%
!!! TTGGTATTTTAGCTGCAATA+TGG + chr1_4:66383049-66383068 Msa0178940:intron 30.0%
CACTATAAAGTAAAGGAGAA+AGG - chr1_4:66383082-66383101 None:intergenic 30.0%
CCATACACACTATAAAGTAA+AGG - chr1_4:66383089-66383108 None:intergenic 30.0%
CCTTTACTTTATAGTGTGTA+TGG + chr1_4:66383086-66383105 Msa0178940:intron 30.0%
! GATCTTTTAAGCTATTGAGT+TGG + chr1_4:66383145-66383164 Msa0178940:intron 30.0%
!! ACTTTGATTTTGCAGAACTT+TGG + chr1_4:66383386-66383405 Msa0178940:intron 30.0%
AACTGATTAAATATTCAGGC+TGG + chr1_4:66383500-66383519 Msa0178940:exon 30.0%
TGATGAGTCAGAGATATGAA+TGG + chr1_4:66381462-66381481 Msa0178940:five_prime_UTR 35.0%
CATCCGTTGTTCAAAAGAAT+AGG + chr1_4:66381496-66381515 Msa0178940:five_prime_UTR 35.0%
ATAACTTACTTCGTCAACCA+TGG + chr1_4:66381560-66381579 Msa0178940:exon 35.0%
CTACAATAGAAATGGAACAG+GGG - chr1_4:66381689-66381708 None:intergenic 35.0%
GCTACAATAGAAATGGAACA+GGG - chr1_4:66381690-66381709 None:intergenic 35.0%
TGCTACAATAGAAATGGAAC+AGG - chr1_4:66381691-66381710 None:intergenic 35.0%
! TTTGAAGCAACTGTGAGAAA+TGG + chr1_4:66382228-66382247 Msa0178940:intron 35.0%
GCAATGATATTGAATAGAGG+AGG - chr1_4:66382359-66382378 None:intergenic 35.0%
CAGGCAATGATATTGAATAG+AGG - chr1_4:66382362-66382381 None:intergenic 35.0%
GTTAATCTATGATGCCAGTT+AGG + chr1_4:66382564-66382583 Msa0178940:intron 35.0%
GAAAAGCTATGATGCTAGTT+AGG + chr1_4:66382595-66382614 Msa0178940:intron 35.0%
!! TTGACTTGTCTATAGTGATC+CGG + chr1_4:66382680-66382699 Msa0178940:intron 35.0%
! ACTTCCTTTTATGATTGCAC+CGG - chr1_4:66382702-66382721 None:intergenic 35.0%
!! ATTTGAGTTTTGGCAAATGG+GGG - chr1_4:66383022-66383041 None:intergenic 35.0%
!! CATTTGAGTTTTGGCAAATG+GGG - chr1_4:66383023-66383042 None:intergenic 35.0%
!! GAGTTGGTGTAGTGATATAT+AGG + chr1_4:66383161-66383180 Msa0178940:intron 35.0%
GACTTGGATTCATCCAATTA+AGG - chr1_4:66383659-66383678 None:intergenic 35.0%
TGATGAGTCAGAGATATGAA+TGG + chr1_4:66381462-66381481 Msa0178940:five_prime_UTR 35.0%
CATCCGTTGTTCAAAAGAAT+AGG + chr1_4:66381496-66381515 Msa0178940:five_prime_UTR 35.0%
ATAACTTACTTCGTCAACCA+TGG + chr1_4:66381560-66381579 Msa0178940:exon 35.0%
CTACAATAGAAATGGAACAG+GGG - chr1_4:66381689-66381708 None:intergenic 35.0%
GCTACAATAGAAATGGAACA+GGG - chr1_4:66381690-66381709 None:intergenic 35.0%
TGCTACAATAGAAATGGAAC+AGG - chr1_4:66381691-66381710 None:intergenic 35.0%
! TTTGAAGCAACTGTGAGAAA+TGG + chr1_4:66382228-66382247 Msa0178940:intron 35.0%
GCAATGATATTGAATAGAGG+AGG - chr1_4:66382359-66382378 None:intergenic 35.0%
CAGGCAATGATATTGAATAG+AGG - chr1_4:66382362-66382381 None:intergenic 35.0%
GTTAATCTATGATGCCAGTT+AGG + chr1_4:66382564-66382583 Msa0178940:intron 35.0%
GAAAAGCTATGATGCTAGTT+AGG + chr1_4:66382595-66382614 Msa0178940:intron 35.0%
!! TTGACTTGTCTATAGTGATC+CGG + chr1_4:66382680-66382699 Msa0178940:intron 35.0%
! ACTTCCTTTTATGATTGCAC+CGG - chr1_4:66382702-66382721 None:intergenic 35.0%
!! ATTTGAGTTTTGGCAAATGG+GGG - chr1_4:66383022-66383041 None:intergenic 35.0%
!! CATTTGAGTTTTGGCAAATG+GGG - chr1_4:66383023-66383042 None:intergenic 35.0%
!! GAGTTGGTGTAGTGATATAT+AGG + chr1_4:66383161-66383180 Msa0178940:intron 35.0%
GACTTGGATTCATCCAATTA+AGG - chr1_4:66383659-66383678 None:intergenic 35.0%
GAACAACGGATGATGAAACA+TGG - chr1_4:66381488-66381507 None:intergenic 40.0%
AACAGGGGATTGAGAGTAAT+GGG - chr1_4:66381638-66381657 None:intergenic 40.0%
TGGTTTAGGAAATTGAGCAG+AGG - chr1_4:66381780-66381799 None:intergenic 40.0%
! ATCATTGCCTGCTTAGTTCT+TGG + chr1_4:66382371-66382390 Msa0178940:intron 40.0%
ATTGTTGCCAAGAACTAAGC+AGG - chr1_4:66382381-66382400 None:intergenic 40.0%
! CTTTTCTTGCAATGCCTAAC+TGG - chr1_4:66382581-66382600 None:intergenic 40.0%
CTATGATGCTAGTTAGGCTT+CGG + chr1_4:66382601-66382620 Msa0178940:intron 40.0%
TATGATGCTAGTTAGGCTTC+GGG + chr1_4:66382602-66382621 Msa0178940:intron 40.0%
TGATCCGGTGCAATCATAAA+AGG + chr1_4:66382695-66382714 Msa0178940:CDS 40.0%
! ATGGGAATGGTTTGGATGTA+TGG + chr1_4:66382773-66382792 Msa0178940:CDS 40.0%
! AATGGTTTGGATGTATGGCT+TGG + chr1_4:66382778-66382797 Msa0178940:CDS 40.0%
AAGAGAGGTTGAGATGAGTA+AGG - chr1_4:66383307-66383326 None:intergenic 40.0%
GCTAAACTGAGTGATAAGAG+AGG - chr1_4:66383322-66383341 None:intergenic 40.0%
GAACAACGGATGATGAAACA+TGG - chr1_4:66381488-66381507 None:intergenic 40.0%
AACAGGGGATTGAGAGTAAT+GGG - chr1_4:66381638-66381657 None:intergenic 40.0%
TGGTTTAGGAAATTGAGCAG+AGG - chr1_4:66381780-66381799 None:intergenic 40.0%
! ATCATTGCCTGCTTAGTTCT+TGG + chr1_4:66382371-66382390 Msa0178940:intron 40.0%
ATTGTTGCCAAGAACTAAGC+AGG - chr1_4:66382381-66382400 None:intergenic 40.0%
! CTTTTCTTGCAATGCCTAAC+TGG - chr1_4:66382581-66382600 None:intergenic 40.0%
CTATGATGCTAGTTAGGCTT+CGG + chr1_4:66382601-66382620 Msa0178940:intron 40.0%
TATGATGCTAGTTAGGCTTC+GGG + chr1_4:66382602-66382621 Msa0178940:intron 40.0%
TGATCCGGTGCAATCATAAA+AGG + chr1_4:66382695-66382714 Msa0178940:CDS 40.0%
! ATGGGAATGGTTTGGATGTA+TGG + chr1_4:66382773-66382792 Msa0178940:CDS 40.0%
! AATGGTTTGGATGTATGGCT+TGG + chr1_4:66382778-66382797 Msa0178940:CDS 40.0%
AAGAGAGGTTGAGATGAGTA+AGG - chr1_4:66383307-66383326 None:intergenic 40.0%
GCTAAACTGAGTGATAAGAG+AGG - chr1_4:66383322-66383341 None:intergenic 40.0%
AGAGACAGAAAGAGAAGCAG+AGG - chr1_4:66381604-66381623 None:intergenic 45.0%
TCTCTTTCTGTCTCTCTTCG+TGG + chr1_4:66381609-66381628 Msa0178940:CDS 45.0%
GAACAGGGGATTGAGAGTAA+TGG - chr1_4:66381639-66381658 None:intergenic 45.0%
GAAATTGAGCAGAGGTTGCA+GGG - chr1_4:66381772-66381791 None:intergenic 45.0%
! GCAGGAACCAAAGTTGGTTT+AGG - chr1_4:66381794-66381813 None:intergenic 45.0%
GAAGCAACTGTGAGAAATGG+TGG + chr1_4:66382231-66382250 Msa0178940:intron 45.0%
ATGATGCTAGTTAGGCTTCG+GGG + chr1_4:66382603-66382622 Msa0178940:intron 45.0%
TGCTCGCATCTTATCGAAAC+TGG - chr1_4:66382742-66382761 None:intergenic 45.0%
AAGATGCGAGCAAAACACCA+AGG + chr1_4:66382750-66382769 Msa0178940:CDS 45.0%
CAAAACACCAAGGATGGGAA+TGG + chr1_4:66382760-66382779 Msa0178940:CDS 45.0%
ATCCAAACCATTCCCATCCT+TGG - chr1_4:66382770-66382789 None:intergenic 45.0%
TGGTGCGCAATATTACCTCT+AGG - chr1_4:66382867-66382886 None:intergenic 45.0%
CGTTGAAACTTGCACTCACT+TGG - chr1_4:66383240-66383259 None:intergenic 45.0%
AGAGACAGAAAGAGAAGCAG+AGG - chr1_4:66381604-66381623 None:intergenic 45.0%
TCTCTTTCTGTCTCTCTTCG+TGG + chr1_4:66381609-66381628 Msa0178940:CDS 45.0%
GAACAGGGGATTGAGAGTAA+TGG - chr1_4:66381639-66381658 None:intergenic 45.0%
GAAATTGAGCAGAGGTTGCA+GGG - chr1_4:66381772-66381791 None:intergenic 45.0%
! GCAGGAACCAAAGTTGGTTT+AGG - chr1_4:66381794-66381813 None:intergenic 45.0%
GAAGCAACTGTGAGAAATGG+TGG + chr1_4:66382231-66382250 Msa0178940:intron 45.0%
ATGATGCTAGTTAGGCTTCG+GGG + chr1_4:66382603-66382622 Msa0178940:intron 45.0%
TGCTCGCATCTTATCGAAAC+TGG - chr1_4:66382742-66382761 None:intergenic 45.0%
AAGATGCGAGCAAAACACCA+AGG + chr1_4:66382750-66382769 Msa0178940:CDS 45.0%
CAAAACACCAAGGATGGGAA+TGG + chr1_4:66382760-66382779 Msa0178940:CDS 45.0%
ATCCAAACCATTCCCATCCT+TGG - chr1_4:66382770-66382789 None:intergenic 45.0%
TGGTGCGCAATATTACCTCT+AGG - chr1_4:66382867-66382886 None:intergenic 45.0%
CGTTGAAACTTGCACTCACT+TGG - chr1_4:66383240-66383259 None:intergenic 45.0%
CTGACTCATCAACGCTAACG+TGG - chr1_4:66381453-66381472 None:intergenic 50.0%
TTGAGCTTGAGCAAGTGCCA+TGG - chr1_4:66381580-66381599 None:intergenic 50.0%
GGAAATTGAGCAGAGGTTGC+AGG - chr1_4:66381773-66381792 None:intergenic 50.0%
GCTCTAGCAGGAACCAAAGT+TGG - chr1_4:66381800-66381819 None:intergenic 50.0%
GTTGCAAAGGATGCTCTAGC+AGG - chr1_4:66381812-66381831 None:intergenic 50.0%
! GCTAGAGCATCCTTTGCAAC+TGG + chr1_4:66381812-66381831 Msa0178940:CDS 50.0%
TAGTGGGGAACCAGTTGCAA+AGG - chr1_4:66381825-66381844 None:intergenic 50.0%
GCTCACAAGCTTCACTTGCT+CGG - chr1_4:66382201-66382220 None:intergenic 50.0%
TGCGAGCAAAACACCAAGGA+TGG + chr1_4:66382754-66382773 Msa0178940:CDS 50.0%
GCGAGCAAAACACCAAGGAT+GGG + chr1_4:66382755-66382774 Msa0178940:CDS 50.0%
CACCAAGGATGGGAATGGTT+TGG + chr1_4:66382765-66382784 Msa0178940:CDS 50.0%
! GTTTGGATGTATGGCTTGGC+CGG + chr1_4:66382782-66382801 Msa0178940:CDS 50.0%
! TTTGGATGTATGGCTTGGCC+GGG + chr1_4:66382783-66382802 Msa0178940:CDS 50.0%
CAAAACCAACCATGGCTACC+CGG - chr1_4:66382804-66382823 None:intergenic 50.0%
!!! AGCCATGGTTGGTTTTGCAG+TGG + chr1_4:66382807-66382826 Msa0178940:CDS 50.0%
! TTCTGGAAAGGGACTCCTAG+AGG + chr1_4:66382849-66382868 Msa0178940:CDS 50.0%
!! ATCAGTTCTCTGAGGCTGAC+TGG - chr1_4:66383487-66383506 None:intergenic 50.0%
CTGACTCATCAACGCTAACG+TGG - chr1_4:66381453-66381472 None:intergenic 50.0%
TTGAGCTTGAGCAAGTGCCA+TGG - chr1_4:66381580-66381599 None:intergenic 50.0%
GGAAATTGAGCAGAGGTTGC+AGG - chr1_4:66381773-66381792 None:intergenic 50.0%
GCTCTAGCAGGAACCAAAGT+TGG - chr1_4:66381800-66381819 None:intergenic 50.0%
GTTGCAAAGGATGCTCTAGC+AGG - chr1_4:66381812-66381831 None:intergenic 50.0%
! GCTAGAGCATCCTTTGCAAC+TGG + chr1_4:66381812-66381831 Msa0178940:CDS 50.0%
TAGTGGGGAACCAGTTGCAA+AGG - chr1_4:66381825-66381844 None:intergenic 50.0%
GCTCACAAGCTTCACTTGCT+CGG - chr1_4:66382201-66382220 None:intergenic 50.0%
TGCGAGCAAAACACCAAGGA+TGG + chr1_4:66382754-66382773 Msa0178940:CDS 50.0%
GCGAGCAAAACACCAAGGAT+GGG + chr1_4:66382755-66382774 Msa0178940:CDS 50.0%
CACCAAGGATGGGAATGGTT+TGG + chr1_4:66382765-66382784 Msa0178940:CDS 50.0%
! GTTTGGATGTATGGCTTGGC+CGG + chr1_4:66382782-66382801 Msa0178940:CDS 50.0%
! TTTGGATGTATGGCTTGGCC+GGG + chr1_4:66382783-66382802 Msa0178940:CDS 50.0%
CAAAACCAACCATGGCTACC+CGG - chr1_4:66382804-66382823 None:intergenic 50.0%
!!! AGCCATGGTTGGTTTTGCAG+TGG + chr1_4:66382807-66382826 Msa0178940:CDS 50.0%
! TTCTGGAAAGGGACTCCTAG+AGG + chr1_4:66382849-66382868 Msa0178940:CDS 50.0%
!! ATCAGTTCTCTGAGGCTGAC+TGG - chr1_4:66383487-66383506 None:intergenic 50.0%
TGCTAGTTAGGCTTCGGGGA+AGG + chr1_4:66382607-66382626 Msa0178940:intron 55.0%
TAGTTAGGCTTCGGGGAAGG+TGG + chr1_4:66382610-66382629 Msa0178940:intron 55.0%
GGCCACTGCAAAACCAACCA+TGG - chr1_4:66382812-66382831 None:intergenic 55.0%
TCCACTGCCTACAGTTGCCT+TGG + chr1_4:66383418-66383437 Msa0178940:CDS 55.0%
GTTACGGCCAAGGCAACTGT+AGG - chr1_4:66383428-66383447 None:intergenic 55.0%
ACAGTTGCCTTGGCCGTAAC+AGG + chr1_4:66383428-66383447 Msa0178940:CDS 55.0%
! TTGGCCGTAACAGGACTGGT+GGG + chr1_4:66383437-66383456 Msa0178940:CDS 55.0%
GACACCCACCAGTCCTGTTA+CGG - chr1_4:66383444-66383463 None:intergenic 55.0%
TGCTAGTTAGGCTTCGGGGA+AGG + chr1_4:66382607-66382626 Msa0178940:intron 55.0%
TAGTTAGGCTTCGGGGAAGG+TGG + chr1_4:66382610-66382629 Msa0178940:intron 55.0%
GGCCACTGCAAAACCAACCA+TGG - chr1_4:66382812-66382831 None:intergenic 55.0%
TCCACTGCCTACAGTTGCCT+TGG + chr1_4:66383418-66383437 Msa0178940:CDS 55.0%
GTTACGGCCAAGGCAACTGT+AGG - chr1_4:66383428-66383447 None:intergenic 55.0%
ACAGTTGCCTTGGCCGTAAC+AGG + chr1_4:66383428-66383447 Msa0178940:CDS 55.0%
! TTGGCCGTAACAGGACTGGT+GGG + chr1_4:66383437-66383456 Msa0178940:CDS 55.0%
GACACCCACCAGTCCTGTTA+CGG - chr1_4:66383444-66383463 None:intergenic 55.0%
GCCAAGGCAACTGTAGGCAG+TGG - chr1_4:66383422-66383441 None:intergenic 60.0%
TGCCTTGGCCGTAACAGGAC+TGG + chr1_4:66383433-66383452 Msa0178940:CDS 60.0%
CACCAGTCCTGTTACGGCCA+AGG - chr1_4:66383438-66383457 None:intergenic 60.0%
CTTGGCCGTAACAGGACTGG+TGG + chr1_4:66383436-66383455 Msa0178940:CDS 60.0%
GCCAAGGCAACTGTAGGCAG+TGG - chr1_4:66383422-66383441 None:intergenic 60.0%
TGCCTTGGCCGTAACAGGAC+TGG + chr1_4:66383433-66383452 Msa0178940:CDS 60.0%
CACCAGTCCTGTTACGGCCA+AGG - chr1_4:66383438-66383457 None:intergenic 60.0%
CTTGGCCGTAACAGGACTGG+TGG + chr1_4:66383436-66383455 Msa0178940:CDS 60.0%
! ATGGCTTGGCCGGGTAGCCA+TGG + chr1_4:66382792-66382811 Msa0178940:CDS 65.0%
CTTGGCCGGGTAGCCATGGT+TGG + chr1_4:66382796-66382815 Msa0178940:CDS 65.0%
! ATGGCTTGGCCGGGTAGCCA+TGG + chr1_4:66382792-66382811 Msa0178940:CDS 65.0%
CTTGGCCGGGTAGCCATGGT+TGG + chr1_4:66382796-66382815 Msa0178940:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 66381449 66383698 66381449 ID=Msa0178940;Name=Msa0178940
chr1_4 mRNA 66381449 66383698 66381449 ID=Msa0178940-mRNA-1;Parent=Msa0178940;Name=Msa0178940-mRNA-1;_AED=0.02;_eAED=0.02;_QI=130|1|1|1|1|1|4|193|145
chr1_4 exon 66381449 66381630 66381449 ID=Msa0178940-mRNA-1:exon:21654;Parent=Msa0178940-mRNA-1
chr1_4 exon 66381741 66381845 66381741 ID=Msa0178940-mRNA-1:exon:21655;Parent=Msa0178940-mRNA-1
chr1_4 exon 66382695 66382870 66382695 ID=Msa0178940-mRNA-1:exon:21656;Parent=Msa0178940-mRNA-1
chr1_4 exon 66383401 66383698 66383401 ID=Msa0178940-mRNA-1:exon:21657;Parent=Msa0178940-mRNA-1
chr1_4 five_prime_UTR 66381449 66381578 66381449 ID=Msa0178940-mRNA-1:five_prime_utr;Parent=Msa0178940-mRNA-1
chr1_4 CDS 66381579 66381630 66381579 ID=Msa0178940-mRNA-1:cds;Parent=Msa0178940-mRNA-1
chr1_4 CDS 66381741 66381845 66381741 ID=Msa0178940-mRNA-1:cds;Parent=Msa0178940-mRNA-1
chr1_4 CDS 66382695 66382870 66382695 ID=Msa0178940-mRNA-1:cds;Parent=Msa0178940-mRNA-1
chr1_4 CDS 66383401 66383505 66383401 ID=Msa0178940-mRNA-1:cds;Parent=Msa0178940-mRNA-1
chr1_4 three_prime_UTR 66383506 66383698 66383506 ID=Msa0178940-mRNA-1:three_prime_utr;Parent=Msa0178940-mRNA-1
Gene Sequence

>Msa0178940

ATGGCACTTGCTCAAGCTCAAACCTCTGCTTCTCTTTCTGTCTCTCTTCGTGATGCACGTGTTTTCACAACAAGAAACTGCCCTGCAACCTCTGCTCAATTTCCTAAACCAACTTTGGTTCCTGCTAGAGCATCCTTTGCAACTGGTTCCCCACTAATGATCCGGTGCAATCATAAAAGGAAGTTAGCATGCAAAGCAATGCCAGTTTCGATAAGATGCGAGCAAAACACCAAGGATGGGAATGGTTTGGATGTATGGCTTGGCCGGGTAGCCATGGTTGGTTTTGCAGTGGCCATTACTGTTGAAATTACTTCTGGAAAGGGACTCCTAGAGAACTTTGGACTCACAAGTCCACTGCCTACAGTTGCCTTGGCCGTAACAGGACTGGTGGGTGTCTTGACAGCAGTTTTCATCTTCCAGTCAGCCTCAGAGAACTGA

Protein sequence

>Msa0178940

MALAQAQTSASLSVSLRDARVFTTRNCPATSAQFPKPTLVPARASFATGSPLMIRCNHKRKLACKAMPVSIRCEQNTKDGNGLDVWLGRVAMVGFAVAITVEITSGKGLLENFGLTSPLPTVALAVTGLVGVLTAVFIFQSASEN*