AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0037820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037820 MtrunA17_Chr1g0212371 89.181 342 21 3 1 332 1 336 0.0 556
Msa0037820 MtrunA17_Chr8g0378941 38.251 183 97 5 132 311 172 341 1.27e-32 124
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037820 AT2G31840.1 71.489 235 64 2 93 324 109 343 6.29e-113 332
Msa0037820 AT2G31840.2 71.489 235 64 2 93 324 109 343 6.29e-113 332
Msa0037820 AT4G28590.1 39.106 179 91 7 139 313 158 322 5.82e-34 127

Find 99 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAATCTTCATTTACAAAT+TGG 0.236557 1_1:-67001832 Msa0037820:three_prime_UTR
TTTCTCAAACCCCACTTTAC+AGG 0.236764 1_1:-67005146 Msa0037820:CDS
GCAGCCTTCATGTCTTTAAT+AGG 0.271223 1_1:+67004668 None:intergenic
TCAGCATCTTGAGGCCAATT+AGG 0.323877 1_1:+67004830 None:intergenic
GACTAACATTTCAGATTTCC+AGG 0.330126 1_1:-67002127 Msa0037820:CDS
GGTTGATGGTGATAACTATC+AGG 0.342335 1_1:-67001676 Msa0037820:three_prime_UTR
GCCTCAAGATGCTGATGGTT+GGG 0.347115 1_1:-67004822 Msa0037820:CDS
GAAGTTATCTTTACTAAAGC+AGG 0.362361 1_1:-67002355 Msa0037820:CDS
TGATTGAACTCTTGTTAGTT+TGG 0.367683 1_1:+67005114 None:intergenic
TTGTCCACAATCGTTATAGA+AGG 0.369198 1_1:-67004598 Msa0037820:intron
TCACTCAAATCTGATGGTTC+TGG 0.371232 1_1:-67005094 Msa0037820:CDS
CACAATGACAATATGCTAGA+TGG 0.376514 1_1:+67002014 None:intergenic
ATCATATTGTATGCAGTCAA+TGG 0.378354 1_1:+67001961 None:intergenic
GCTTTAGTAAAGATAACTTC+TGG 0.387977 1_1:+67002358 None:intergenic
ATGGAAATACTTCAGCGATA+TGG 0.392411 1_1:+67002033 None:intergenic
GTTGTAAAGAGAAAATGAAT+TGG 0.401953 1_1:+67005192 None:intergenic
TCACCTTAGGCTTGGCTTGG+TGG 0.403474 1_1:-67001881 Msa0037820:three_prime_UTR
TTGTAAAGAGAAAATGAATT+GGG 0.405487 1_1:+67005193 None:intergenic
CACCTTAGGCTTGGCTTGGT+GGG 0.414387 1_1:-67001880 Msa0037820:three_prime_UTR
TTTACAACAAACTCTTCAAC+CGG 0.424293 1_1:-67005177 Msa0037820:CDS
ATTAAAGATAGCAATATTCA+AGG 0.430847 1_1:+67001591 None:intergenic
TCTTCAAGAGTCATAACATA+AGG 0.432780 1_1:+67004992 None:intergenic
GGCTGCCTAGTGTTCTCTGC+TGG 0.433044 1_1:+67005280 None:intergenic
GTTAGTCAAACACGATGGTT+TGG 0.445608 1_1:+67002143 None:intergenic
TGGAAGAGGAGGATCCTAAT+TGG 0.447524 1_1:-67004844 Msa0037820:CDS
TAGGCAGCCTCCTCCGACCA+TGG 0.454179 1_1:-67005266 Msa0037820:exon
CTTTAGTAAAGATAACTTCT+GGG 0.455068 1_1:+67002359 None:intergenic
TCAGAACACTGGATTGTCAA+TGG 0.456395 1_1:+67002086 None:intergenic
AGAAGGCTGTGCATATCATA+TGG 0.459941 1_1:-67002577 Msa0037820:CDS
AGACATGAAGGCTGCTGAAT+GGG 0.460094 1_1:-67004660 Msa0037820:CDS
TGGACTCACTTAAGATTAGC+AGG 0.463057 1_1:-67001746 Msa0037820:three_prime_UTR
TAAAGTGGGGTTTGAGAAAA+GGG 0.468151 1_1:+67005150 None:intergenic
CCATCACCTTAGGCTTGGCT+TGG 0.469449 1_1:-67001884 Msa0037820:three_prime_UTR
GTAAAGTGGGGTTTGAGAAA+AGG 0.470216 1_1:+67005149 None:intergenic
CCTCAAGATGCTGATGGTTG+GGG 0.471802 1_1:-67004821 Msa0037820:CDS
GGTTTGAGAAAAGGGTCTTC+CGG 0.471829 1_1:+67005158 None:intergenic
GAATCATTAACCTGTAAAGT+GGG 0.479361 1_1:+67005136 None:intergenic
CTGCAAGAAATTCATGCAAT+GGG 0.479855 1_1:-67001931 Msa0037820:three_prime_UTR
GGAATCATTAACCTGTAAAG+TGG 0.480863 1_1:+67005135 None:intergenic
ATTGTGGACAAGAATAATCA+AGG 0.499873 1_1:+67004610 None:intergenic
CTTCAAGAGTCATAACATAA+GGG 0.503004 1_1:+67004993 None:intergenic
AAGACATGAAGGCTGCTGAA+TGG 0.504100 1_1:-67004661 Msa0037820:CDS
AGAAACCAGCAGAGAACACT+AGG 0.506216 1_1:-67005285 Msa0037820:five_prime_UTR
TTACCAACTTGTTGTGGAAG+AGG 0.507121 1_1:-67004858 Msa0037820:CDS
GATGGTTGGGGATTCAGCCT+TGG 0.507224 1_1:-67004809 Msa0037820:CDS
GGAAGCCATCACCTTAGGCT+TGG 0.510056 1_1:-67001889 Msa0037820:three_prime_UTR
AAGGCTCTATCTGAGGTTGA+TGG 0.511695 1_1:-67001690 Msa0037820:three_prime_UTR
AGTTGCTGCACTTAAAGTAT+CGG 0.515906 1_1:-67002386 Msa0037820:CDS
TTATCATCTTGCCACACTAT+CGG 0.517607 1_1:+67004701 None:intergenic
TCTACAACTTCTTGAACTTG+AGG 0.519587 1_1:+67004923 None:intergenic
TAATGATTACCAACTTGTTG+TGG 0.520440 1_1:-67004864 Msa0037820:CDS
ACTGCAAGAAATTCATGCAA+TGG 0.520767 1_1:-67001932 Msa0037820:three_prime_UTR
ATCATCAACATCATCGTCCT+CGG 0.534011 1_1:+67004730 None:intergenic
GCCTAAGGTGATGGCTTCCA+CGG 0.534560 1_1:+67001893 None:intergenic
AACACGATGGTTTGGCTCCA+CGG 0.534700 1_1:+67002151 None:intergenic
ACCGTGGAAGCCATCACCTT+AGG 0.543507 1_1:-67001894 Msa0037820:three_prime_UTR
GGCCTCAAGATGCTGATGGT+TGG 0.550479 1_1:-67004823 Msa0037820:CDS
CAAACCTTCTATAACGATTG+TGG 0.550589 1_1:+67004594 None:intergenic
TTTATTACTTACTCTTGGTG+AGG 0.554532 1_1:+67002541 None:intergenic
TTGAGTGCCATGGTCGGAGG+AGG 0.555658 1_1:+67005259 None:intergenic
AACCCACCAAGCCAAGCCTA+AGG 0.559832 1_1:+67001878 None:intergenic
TCAAATCTGATGGTTCTGGT+TGG 0.565426 1_1:-67005090 Msa0037820:CDS
TTATTACTTACTCTTGGTGA+GGG 0.566848 1_1:+67002542 None:intergenic
GTTCAATCACTCAAATCTGA+TGG 0.569587 1_1:-67005100 Msa0037820:CDS
CCTCCTCTTCCACAACAAGT+TGG 0.573358 1_1:+67004855 None:intergenic
CCAAGCCAAGCCTAAGGTGA+TGG 0.576268 1_1:+67001884 None:intergenic
GTTGATGGTGATAACTATCA+GGG 0.576344 1_1:-67001675 Msa0037820:three_prime_UTR
GGATTGTCAATGGTAAAAGA+AGG 0.585441 1_1:+67002096 None:intergenic
GTAATCTGTGTGCATCAAGA+AGG 0.587847 1_1:-67001709 Msa0037820:three_prime_UTR
TCGTCCTATTAAAGACATGA+AGG 0.589532 1_1:-67004672 Msa0037820:CDS
GGCAAATTGAGTGCCATGGT+CGG 0.590720 1_1:+67005253 None:intergenic
CCAACTTGTTGTGGAAGAGG+AGG 0.593627 1_1:-67004855 Msa0037820:CDS
AATTCGAGAAGAACTAGAGA+AGG 0.595768 1_1:-67002594 Msa0037820:CDS
AAGTTATCTTTACTAAAGCA+GGG 0.597570 1_1:-67002354 Msa0037820:CDS
GGTTCTGGTTGGAAGAGAAG+AGG 0.600482 1_1:-67005079 Msa0037820:CDS
AATTGGCCTCAAGATGCTGA+TGG 0.603896 1_1:-67004827 Msa0037820:CDS
CATGAAGGCTGCTGAATGGG+AGG 0.605185 1_1:-67004657 Msa0037820:CDS
CTCTTGAAGAGAGACAAGAA+TGG 0.610446 1_1:-67004979 Msa0037820:CDS
ATATGTTTCATTGATGACAG+TGG 0.611526 1_1:+67005232 None:intergenic
GACTCACTTAAGATTAGCAG+GGG 0.614621 1_1:-67001744 Msa0037820:three_prime_UTR
GGAAGATAATGATGATGCCG+AGG 0.624630 1_1:-67004747 Msa0037820:CDS
AGTACATATACTATTTGCAG+TGG 0.627400 1_1:-67001766 Msa0037820:three_prime_UTR
AAATTGAGTGCCATGGTCGG+AGG 0.630316 1_1:+67005256 None:intergenic
TCATTGTGTAAAATATGCAA+AGG 0.631384 1_1:-67001999 Msa0037820:three_prime_UTR
GGACTCACTTAAGATTAGCA+GGG 0.632089 1_1:-67001745 Msa0037820:three_prime_UTR
AATCATTAACCTGTAAAGTG+GGG 0.632642 1_1:+67005137 None:intergenic
CCCCAACCATCAGCATCTTG+AGG 0.632853 1_1:+67004821 None:intergenic
CAGATCAAATACCTTTATCA+CGG 0.634112 1_1:+67002320 None:intergenic
TTGTGGACAAGAATAATCAA+GGG 0.634415 1_1:+67004611 None:intergenic
CATCAAGAAGGCTCTATCTG+AGG 0.636786 1_1:-67001697 Msa0037820:three_prime_UTR
TGATAGCGACGATGAAGATG+AGG 0.647162 1_1:-67005032 Msa0037820:CDS
GGCTGTTTGATGTGTGACCG+TGG 0.652769 1_1:-67001910 Msa0037820:three_prime_UTR
CAATTCGCAGTGCAGATGAG+TGG 0.653894 1_1:-67002200 Msa0037820:CDS
CAGTGGCAAATTGAGTGCCA+TGG 0.668004 1_1:+67005249 None:intergenic
GAAATGTTAGTCAAACACGA+TGG 0.698534 1_1:+67002138 None:intergenic
ATGATGATAAGCCGATAGTG+TGG 0.713878 1_1:-67004712 Msa0037820:CDS
GTACTTTCTAAATATGCACA+AGG 0.714903 1_1:+67001784 None:intergenic
TTGATGGTGATAACTATCAG+GGG 0.719299 1_1:-67001674 Msa0037820:three_prime_UTR
TCAAGAAGTTGTAGACACCG+AGG 0.738091 1_1:-67004915 Msa0037820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGATAAAAAAACAATAGTTT+TGG + chr1_1:67002319-67002338 None:intergenic 15.0%
!!! TAAGAAAAGATTCTTTTTTT+AGG - chr1_1:67003552-67003571 Msa0037820:intron 15.0%
!!! AATGTTTTTATTTATCTTAC+TGG - chr1_1:67005274-67005293 Msa0037820:five_prime_UTR 15.0%
!! TTGTAAAGAGAAAATGAATT+GGG + chr1_1:67001649-67001668 None:intergenic 20.0%
!! TACAATACAAAACAAAAAGA+AGG - chr1_1:67002071-67002090 Msa0037820:exon 20.0%
!! TGTAATGTAAGAAGTTAAAA+AGG + chr1_1:67002451-67002470 None:intergenic 20.0%
!! AGTTATTGTAGAGTATATTT+AGG - chr1_1:67002777-67002796 Msa0037820:intron 20.0%
!! TGTGATATAAGAAGAAAAAA+AGG + chr1_1:67003699-67003718 None:intergenic 20.0%
!! AACTAAACTAAATCAAGAAA+AGG + chr1_1:67003731-67003750 None:intergenic 20.0%
!! TAGAATACAATGCATATATA+TGG - chr1_1:67003838-67003857 Msa0037820:intron 20.0%
!!! TCATTGTATCTTTTTTGAAA+TGG - chr1_1:67004031-67004050 Msa0037820:intron 20.0%
!!! CATTGTATCTTTTTTGAAAT+GGG - chr1_1:67004032-67004051 Msa0037820:intron 20.0%
!!! ACATTTTCACTTTTATTCTT+AGG - chr1_1:67004205-67004224 Msa0037820:intron 20.0%
!!! CTTTTACTGAATTTTGTATT+TGG + chr1_1:67004548-67004567 None:intergenic 20.0%
!! ATGAATCTTCATTTACAAAT+TGG - chr1_1:67005007-67005026 Msa0037820:CDS 20.0%
!! ATTAAAGATAGCAATATTCA+AGG + chr1_1:67005251-67005270 None:intergenic 20.0%
! GTTGTAAAGAGAAAATGAAT+TGG + chr1_1:67001650-67001669 None:intergenic 25.0%
!!! TTATCTTGTTTTAGTTGAAG+TGG - chr1_1:67002343-67002362 Msa0037820:CDS 25.0%
! GTTAGTCGATTATCAATTAA+TGG - chr1_1:67002380-67002399 Msa0037820:CDS 25.0%
!! TTATCTACCTCTATTTTACT+AGG - chr1_1:67003332-67003351 Msa0037820:intron 25.0%
!! CTAAGCTAAAAATATGGTTT+TGG + chr1_1:67003443-67003462 None:intergenic 25.0%
! AACAAGCTAAGCTAAAAATA+TGG + chr1_1:67003449-67003468 None:intergenic 25.0%
!! TCTTTTCTTATATATGAGAC+CGG + chr1_1:67003542-67003561 None:intergenic 25.0%
!! ACAATGTTGTTTGTTCTTAT+AGG - chr1_1:67003586-67003605 Msa0037820:intron 25.0%
!! ATGTATGATACGATTTTCAA+TGG - chr1_1:67003627-67003646 Msa0037820:intron 25.0%
! TAAAAGTGAAAATGTTAGAC+AGG + chr1_1:67004200-67004219 None:intergenic 25.0%
! ATGACTTTATTACTTACTCT+TGG + chr1_1:67004306-67004325 None:intergenic 25.0%
!! TATAATGATATGAAAGTGTG+TGG - chr1_1:67004402-67004421 Msa0037820:intron 25.0%
! CTTTAGTAAAGATAACTTCT+GGG + chr1_1:67004483-67004502 None:intergenic 25.0%
! AAGTTATCTTTACTAAAGCA+GGG - chr1_1:67004485-67004504 Msa0037820:intron 25.0%
!! AAGATTTTATACCGTGATAA+AGG - chr1_1:67004508-67004527 Msa0037820:intron 25.0%
! TCATTGTGTAAAATATGCAA+AGG - chr1_1:67004840-67004859 Msa0037820:CDS 25.0%
! ACTGGAAAACAAAGAAAAAT+TGG - chr1_1:67005292-67005311 Msa0037820:five_prime_UTR 25.0%
! ATATGTTTCATTGATGACAG+TGG + chr1_1:67001610-67001629 None:intergenic 30.0%
TTTACAACAAACTCTTCAAC+CGG - chr1_1:67001662-67001681 Msa0037820:three_prime_UTR 30.0%
AATCATTAACCTGTAAAGTG+GGG + chr1_1:67001705-67001724 None:intergenic 30.0%
GAATCATTAACCTGTAAAGT+GGG + chr1_1:67001706-67001725 None:intergenic 30.0%
TGATTGAACTCTTGTTAGTT+TGG + chr1_1:67001728-67001747 None:intergenic 30.0%
!! ACATAAGGGTCATTTTGTTT+CGG + chr1_1:67001835-67001854 None:intergenic 30.0%
CTTCAAGAGTCATAACATAA+GGG + chr1_1:67001849-67001868 None:intergenic 30.0%
TCTTCAAGAGTCATAACATA+AGG + chr1_1:67001850-67001869 None:intergenic 30.0%
AAGAAAAATCAGACAGGTTA+TGG - chr1_1:67001885-67001904 Msa0037820:three_prime_UTR 30.0%
! CATTTTCTTCTTCTTTTCCT+CGG + chr1_1:67001944-67001963 None:intergenic 30.0%
!! TAATGATTACCAACTTGTTG+TGG - chr1_1:67001975-67001994 Msa0037820:three_prime_UTR 30.0%
TTGTGGACAAGAATAATCAA+GGG + chr1_1:67002231-67002250 None:intergenic 30.0%
ATTGTGGACAAGAATAATCA+AGG + chr1_1:67002232-67002251 None:intergenic 30.0%
! TTATCAATTAATGGCCGTTT+TGG - chr1_1:67002389-67002408 Msa0037820:CDS 30.0%
!! TGACTGAGTTGTTTGTTATT+TGG - chr1_1:67002419-67002438 Msa0037820:CDS 30.0%
TTTCCACCTGTTTATATACA+TGG - chr1_1:67002607-67002626 Msa0037820:CDS 30.0%
TTCCACCTGTTTATATACAT+GGG - chr1_1:67002608-67002627 Msa0037820:CDS 30.0%
!! AATTTTAGCACTCACATAAG+AGG - chr1_1:67002705-67002724 Msa0037820:intron 30.0%
GTACTAGCTGTCATATAATT+AGG - chr1_1:67002737-67002756 Msa0037820:intron 30.0%
! AGCATATACCTTTTCATACA+TGG - chr1_1:67002871-67002890 Msa0037820:intron 30.0%
CTGAAAACCATAGTTCTTTA+AGG + chr1_1:67002938-67002957 None:intergenic 30.0%
TCAAGTCATCAACATAAACT+AGG + chr1_1:67003021-67003040 None:intergenic 30.0%
!!! GGTGTCTTGAAGTATTTTTT+GGG - chr1_1:67003118-67003137 Msa0037820:intron 30.0%
!!! TTAGCTTGTTTTAGTCTAAG+TGG - chr1_1:67003459-67003478 Msa0037820:intron 30.0%
! ACGATTTTCAATGGTCATTT+TGG - chr1_1:67003636-67003655 Msa0037820:intron 30.0%
! TTCTGAGAGAATAAGAGATT+TGG - chr1_1:67003809-67003828 Msa0037820:intron 30.0%
ATGGATTTCTATCATGATTC+AGG - chr1_1:67003857-67003876 Msa0037820:intron 30.0%
! AATGTTAGACAGGATTGTTT+TGG + chr1_1:67004190-67004209 None:intergenic 30.0%
!!! CGAATTTTTTCATTGTCCTT+TGG + chr1_1:67004231-67004250 None:intergenic 30.0%
TTATTACTTACTCTTGGTGA+GGG + chr1_1:67004300-67004319 None:intergenic 30.0%
TTTATTACTTACTCTTGGTG+AGG + chr1_1:67004301-67004320 None:intergenic 30.0%
AAGTCATACAATCATTCCTT+TGG - chr1_1:67004319-67004338 Msa0037820:intron 30.0%
GATAAAATAGCTGAAACCAA+AGG + chr1_1:67004338-67004357 None:intergenic 30.0%
!! CAGCTATTTTATCACAAAGT+TGG - chr1_1:67004345-67004364 Msa0037820:intron 30.0%
GCTTTAGTAAAGATAACTTC+TGG + chr1_1:67004484-67004503 None:intergenic 30.0%
GAAGTTATCTTTACTAAAGC+AGG - chr1_1:67004484-67004503 Msa0037820:intron 30.0%
CAGATCAAATACCTTTATCA+CGG + chr1_1:67004522-67004541 None:intergenic 30.0%
GATGGAGACGAATAAATAAA+TGG + chr1_1:67004584-67004603 None:intergenic 30.0%
! TAAAAGAAGGAATGTTTTCC+TGG + chr1_1:67004733-67004752 None:intergenic 30.0%
!! TCTTCAATTTTTCAGAACAC+TGG + chr1_1:67004767-67004786 None:intergenic 30.0%
ATCATATTGTATGCAGTCAA+TGG + chr1_1:67004881-67004900 None:intergenic 30.0%
!! TTGGTGGGTTAAAAGAAAAA+TGG - chr1_1:67004974-67004993 Msa0037820:CDS 30.0%
GTACTTTCTAAATATGCACA+AGG + chr1_1:67005058-67005077 None:intergenic 30.0%
AGTACATATACTATTTGCAG+TGG - chr1_1:67005073-67005092 Msa0037820:CDS 30.0%
TAAAGTGGGGTTTGAGAAAA+GGG + chr1_1:67001692-67001711 None:intergenic 35.0%
GGAATCATTAACCTGTAAAG+TGG + chr1_1:67001707-67001726 None:intergenic 35.0%
GTTCAATCACTCAAATCTGA+TGG - chr1_1:67001739-67001758 Msa0037820:three_prime_UTR 35.0%
ATGGAGAAGAAAAATCAGAC+AGG - chr1_1:67001879-67001898 Msa0037820:three_prime_UTR 35.0%
TCTACAACTTCTTGAACTTG+AGG + chr1_1:67001919-67001938 None:intergenic 35.0%
TTATCATCTTGCCACACTAT+CGG + chr1_1:67002141-67002160 None:intergenic 35.0%
TCGTCCTATTAAAGACATGA+AGG - chr1_1:67002167-67002186 Msa0037820:CDS 35.0%
TTGTCCACAATCGTTATAGA+AGG - chr1_1:67002241-67002260 Msa0037820:intron 35.0%
CAAACCTTCTATAACGATTG+TGG + chr1_1:67002248-67002267 None:intergenic 35.0%
!! AGTTGTTTGTTATTTGGAGC+TGG - chr1_1:67002425-67002444 Msa0037820:intron 35.0%
TTCAGACAGAATTAGAGATC+TGG - chr1_1:67002559-67002578 Msa0037820:CDS 35.0%
ATAAACAGGTGGAAATCAAC+AGG + chr1_1:67002602-67002621 None:intergenic 35.0%
AGTCTCCCATGTATATAAAC+AGG + chr1_1:67002616-67002635 None:intergenic 35.0%
TATACATGGGAGACTATTAG+CGG - chr1_1:67002621-67002640 Msa0037820:intron 35.0%
CACTCACATAAGAGGTAATT+AGG - chr1_1:67002713-67002732 Msa0037820:intron 35.0%
AGAGTATATTTAGGCCTAGA+TGG - chr1_1:67002786-67002805 Msa0037820:intron 35.0%
CTCTGATACCATGTATGAAA+AGG + chr1_1:67002882-67002901 None:intergenic 35.0%
GAACAAGGAGTAGTCAAAAT+AGG + chr1_1:67002965-67002984 None:intergenic 35.0%
CTTGCAATATCACACAATTG+TGG - chr1_1:67002994-67003013 Msa0037820:intron 35.0%
GAAATGATCCAGTAGCTATA+TGG - chr1_1:67003050-67003069 Msa0037820:intron 35.0%
TTCACTTTCCATATAGCTAC+TGG + chr1_1:67003061-67003080 None:intergenic 35.0%
! GAACACACGTTTTCATAAGA+AGG - chr1_1:67003090-67003109 Msa0037820:intron 35.0%
! ACGTTTTCATAAGAAGGACT+TGG - chr1_1:67003096-67003115 Msa0037820:intron 35.0%
! CGTTTTCATAAGAAGGACTT+GGG - chr1_1:67003097-67003116 Msa0037820:intron 35.0%
!!! GGGTGTCTTGAAGTATTTTT+TGG - chr1_1:67003117-67003136 Msa0037820:intron 35.0%
!!! GTATTTTTTGGGTGTCAAAG+TGG - chr1_1:67003129-67003148 Msa0037820:intron 35.0%
AAAGATACCAATAGCATTCC+TGG + chr1_1:67003155-67003174 None:intergenic 35.0%
AGCTTATGATTCTGCTTCAT+AGG + chr1_1:67003250-67003269 None:intergenic 35.0%
TTCTTATATATGAGACCGGA+GGG + chr1_1:67003538-67003557 None:intergenic 35.0%
TTTCTTATATATGAGACCGG+AGG + chr1_1:67003539-67003558 None:intergenic 35.0%
CTCACTTTGCACACATAAAA+AGG + chr1_1:67003767-67003786 None:intergenic 35.0%
AAGTAAAATTGAACACCACC+AGG + chr1_1:67004060-67004079 None:intergenic 35.0%
ATCACTACTATAGCCAAATG+CGG + chr1_1:67004106-67004125 None:intergenic 35.0%
GCTTGACTGTAAACATGATA+TGG + chr1_1:67004163-67004182 None:intergenic 35.0%
! CACTTTTATTCTTAGGCCAA+AGG - chr1_1:67004212-67004231 Msa0037820:intron 35.0%
AATTCGAGAAGAACTAGAGA+AGG - chr1_1:67004245-67004264 Msa0037820:intron 35.0%
AGTTGCTGCACTTAAAGTAT+CGG - chr1_1:67004453-67004472 Msa0037820:intron 35.0%
GACCATGACGAATTTCTATT+TGG - chr1_1:67004605-67004624 Msa0037820:CDS 35.0%
CACCAAATAGAAATTCGTCA+TGG + chr1_1:67004610-67004629 None:intergenic 35.0%
CATGACGAATTTCTATTTGG+TGG - chr1_1:67004608-67004627 Msa0037820:CDS 35.0%
AGATGAGTGGTCAAAAATCA+TGG - chr1_1:67004652-67004671 Msa0037820:CDS 35.0%
!!! ATGGCATTTTTTTACTACCG+TGG - chr1_1:67004671-67004690 Msa0037820:CDS 35.0%
GAAATGTTAGTCAAACACGA+TGG + chr1_1:67004704-67004723 None:intergenic 35.0%
GACTAACATTTCAGATTTCC+AGG - chr1_1:67004712-67004731 Msa0037820:CDS 35.0%
GGATTGTCAATGGTAAAAGA+AGG + chr1_1:67004746-67004765 None:intergenic 35.0%
ATGGAAATACTTCAGCGATA+TGG + chr1_1:67004809-67004828 None:intergenic 35.0%
CACAATGACAATATGCTAGA+TGG + chr1_1:67004828-67004847 None:intergenic 35.0%
ACTGCAAGAAATTCATGCAA+TGG - chr1_1:67004907-67004926 Msa0037820:CDS 35.0%
CTGCAAGAAATTCATGCAAT+GGG - chr1_1:67004908-67004927 Msa0037820:CDS 35.0%
!! GTTGATGGTGATAACTATCA+GGG - chr1_1:67005164-67005183 Msa0037820:CDS 35.0%
!! TTGATGGTGATAACTATCAG+GGG - chr1_1:67005165-67005184 Msa0037820:CDS 35.0%
GTAAAGTGGGGTTTGAGAAA+AGG + chr1_1:67001693-67001712 None:intergenic 40.0%
TTTCTCAAACCCCACTTTAC+AGG - chr1_1:67001693-67001712 Msa0037820:three_prime_UTR 40.0%
TCACTCAAATCTGATGGTTC+TGG - chr1_1:67001745-67001764 Msa0037820:three_prime_UTR 40.0%
!! TCAAATCTGATGGTTCTGGT+TGG - chr1_1:67001749-67001768 Msa0037820:three_prime_UTR 40.0%
CTCTTGAAGAGAGACAAGAA+TGG - chr1_1:67001860-67001879 Msa0037820:three_prime_UTR 40.0%
!! TTACCAACTTGTTGTGGAAG+AGG - chr1_1:67001981-67002000 Msa0037820:three_prime_UTR 40.0%
TCTTGTCGAAAAACTGTCCA+AGG + chr1_1:67002050-67002069 None:intergenic 40.0%
ATCATCAACATCATCGTCCT+CGG + chr1_1:67002112-67002131 None:intergenic 40.0%
ATGATGATAAGCCGATAGTG+TGG - chr1_1:67002127-67002146 Msa0037820:CDS 40.0%
GCAGCCTTCATGTCTTTAAT+AGG + chr1_1:67002174-67002193 None:intergenic 40.0%
TGCTTGAGTAAGTAGCTGAA+TGG - chr1_1:67002285-67002304 Msa0037820:intron 40.0%
TCAGTCAGAGTTCTCCAAAA+CGG + chr1_1:67002406-67002425 None:intergenic 40.0%
CACACGCACGAGAAAATATT+CGG + chr1_1:67002507-67002526 None:intergenic 40.0%
CTCCCATGTATATAAACAGG+TGG + chr1_1:67002613-67002632 None:intergenic 40.0%
! GAGACTATTAGCGGACAATT+AGG - chr1_1:67002630-67002649 Msa0037820:intron 40.0%
AGCGGACAATTAGGTGTATT+TGG - chr1_1:67002639-67002658 Msa0037820:intron 40.0%
CCTAGATGGAGTGATGTATT+CGG - chr1_1:67002800-67002819 Msa0037820:intron 40.0%
CTAGATGGAGTGATGTATTC+GGG - chr1_1:67002801-67002820 Msa0037820:intron 40.0%
TAGATGGAGTGATGTATTCG+GGG - chr1_1:67002802-67002821 Msa0037820:intron 40.0%
TTTGGAAAACCAACACCTAG+GGG + chr1_1:67002905-67002924 None:intergenic 40.0%
GTTTGGAAAACCAACACCTA+GGG + chr1_1:67002906-67002925 None:intergenic 40.0%
AGTTTGGAAAACCAACACCT+AGG + chr1_1:67002907-67002926 None:intergenic 40.0%
TCTGCTGCCTTAAAGAACTA+TGG - chr1_1:67002928-67002947 Msa0037820:intron 40.0%
TGCAAGTTGCAACATGAACA+AGG + chr1_1:67002980-67002999 None:intergenic 40.0%
!! GTTGATGACTTGATTGTCTC+AGG - chr1_1:67003028-67003047 Msa0037820:intron 40.0%
! ATGACATCGAGAGCACATTT+GGG + chr1_1:67003187-67003206 None:intergenic 40.0%
! AATGACATCGAGAGCACATT+TGG + chr1_1:67003188-67003207 None:intergenic 40.0%
TCGATGTCATTCTTGAGACT+GGG - chr1_1:67003197-67003216 Msa0037820:intron 40.0%
ATTCTTGAGACTGGGATTCT+AGG - chr1_1:67003205-67003224 Msa0037820:intron 40.0%
ATTGTCAATGTCGTTCAGGT+TGG + chr1_1:67003300-67003319 None:intergenic 40.0%
ACCTGAACGACATTGACAAT+TGG - chr1_1:67003300-67003319 Msa0037820:intron 40.0%
ACCAATTGTCAATGTCGTTC+AGG + chr1_1:67003304-67003323 None:intergenic 40.0%
GCTCTAGCCTAGTAAAATAG+AGG + chr1_1:67003342-67003361 None:intergenic 40.0%
ATTCATGCAACAACCGACAA+TGG - chr1_1:67003390-67003409 Msa0037820:intron 40.0%
AACCGACAATGGATCATTGA+AGG - chr1_1:67003401-67003420 Msa0037820:intron 40.0%
AGCCTTCAATGATCCATTGT+CGG + chr1_1:67003406-67003425 None:intergenic 40.0%
ATGGATCATTGAAGGCTGAA+TGG - chr1_1:67003409-67003428 Msa0037820:intron 40.0%
CTAAGTGGCTGAATGCTAAT+TGG - chr1_1:67003474-67003493 Msa0037820:intron 40.0%
TTGAAACTATCTACTCCCTC+CGG - chr1_1:67003520-67003539 Msa0037820:intron 40.0%
GCTACAACTAGCAATCTACT+CGG + chr1_1:67003673-67003692 None:intergenic 40.0%
AGTAGATTGCTAGTTGTAGC+TGG - chr1_1:67003673-67003692 Msa0037820:intron 40.0%
CATGTATACACACAGGTTCT+TGG + chr1_1:67003885-67003904 None:intergenic 40.0%
AGTCTCTCATGTATACACAC+AGG + chr1_1:67003892-67003911 None:intergenic 40.0%
!!! TCTTTTTTGAAATGGGCTCC+TGG - chr1_1:67004039-67004058 Msa0037820:intron 40.0%
GCGGAAGTTATTTGCACATA+AGG + chr1_1:67004087-67004106 None:intergenic 40.0%
GTGCAAATAACTTCCGCATT+TGG - chr1_1:67004090-67004109 Msa0037820:intron 40.0%
AGAAGGCTGTGCATATCATA+TGG - chr1_1:67004262-67004281 Msa0037820:intron 40.0%
AGAAATTCGTCATGGTCAGA+TGG + chr1_1:67004602-67004621 None:intergenic 40.0%
GTTAGTCAAACACGATGGTT+TGG + chr1_1:67004699-67004718 None:intergenic 40.0%
TCAGAACACTGGATTGTCAA+TGG + chr1_1:67004756-67004775 None:intergenic 40.0%
TGGACTCACTTAAGATTAGC+AGG - chr1_1:67005093-67005112 Msa0037820:CDS 40.0%
GGACTCACTTAAGATTAGCA+GGG - chr1_1:67005094-67005113 Msa0037820:CDS 40.0%
GACTCACTTAAGATTAGCAG+GGG - chr1_1:67005095-67005114 Msa0037820:CDS 40.0%
GTAATCTGTGTGCATCAAGA+AGG - chr1_1:67005130-67005149 Msa0037820:CDS 40.0%
!! GGTTGATGGTGATAACTATC+AGG - chr1_1:67005163-67005182 Msa0037820:CDS 40.0%
AGAAACCAGCAGAGAACACT+AGG - chr1_1:67001554-67001573 Msa0037820:three_prime_UTR 45.0%
GGTTTGAGAAAAGGGTCTTC+CGG + chr1_1:67001684-67001703 None:intergenic 45.0%
! TGATAGCGACGATGAAGATG+AGG - chr1_1:67001807-67001826 Msa0037820:three_prime_UTR 45.0%
TCAAGAAGTTGTAGACACCG+AGG - chr1_1:67001924-67001943 Msa0037820:three_prime_UTR 45.0%
TGGAAGAGGAGGATCCTAAT+TGG - chr1_1:67001995-67002014 Msa0037820:three_prime_UTR 45.0%
TCAGCATCTTGAGGCCAATT+AGG + chr1_1:67002012-67002031 None:intergenic 45.0%
! AATTGGCCTCAAGATGCTGA+TGG - chr1_1:67002012-67002031 Msa0037820:three_prime_UTR 45.0%
! GGAAGATAATGATGATGCCG+AGG - chr1_1:67002092-67002111 Msa0037820:CDS 45.0%
AAGACATGAAGGCTGCTGAA+TGG - chr1_1:67002178-67002197 Msa0037820:CDS 45.0%
AGACATGAAGGCTGCTGAAT+GGG - chr1_1:67002179-67002198 Msa0037820:CDS 45.0%
CCGAATACATCACTCCATCT+AGG + chr1_1:67002803-67002822 None:intergenic 45.0%
!! CTTTAAGGCAGCAGAGAGTT+TGG + chr1_1:67002923-67002942 None:intergenic 45.0%
AAAGTGGCCAGGAATGCTAT+TGG - chr1_1:67003145-67003164 Msa0037820:intron 45.0%
CTCGATGTCATTCTTGAGAC+TGG - chr1_1:67003196-67003215 Msa0037820:intron 45.0%
CATAGGCACACTAACTGGTT+AGG + chr1_1:67003233-67003252 None:intergenic 45.0%
TGCTTCATAGGCACACTAAC+TGG + chr1_1:67003238-67003257 None:intergenic 45.0%
TCATAAGCTTGCATTAGCCC+AGG - chr1_1:67003261-67003280 Msa0037820:intron 45.0%
CATAAGCTTGCATTAGCCCA+GGG - chr1_1:67003262-67003281 Msa0037820:intron 45.0%
TTGGTCAAGAAAAGGACCCT+GGG + chr1_1:67003281-67003300 None:intergenic 45.0%
!! CGTTCAGGTTGGTCAAGAAA+AGG + chr1_1:67003289-67003308 None:intergenic 45.0%
GGAGGGAGTAGATAGTTTCA+AGG + chr1_1:67003521-67003540 None:intergenic 45.0%
!!! TTTTTGAAATGGGCTCCTGG+TGG - chr1_1:67004042-67004061 Msa0037820:intron 45.0%
CATCAAGAAGGCTCTATCTG+AGG - chr1_1:67005142-67005161 Msa0037820:CDS 45.0%
! AAGGCTCTATCTGAGGTTGA+TGG - chr1_1:67005149-67005168 Msa0037820:CDS 45.0%
! GGGCATCAGCATTTTGTAGT+AGG - chr1_1:67005185-67005204 Msa0037820:CDS 45.0%
!! ATATCATTATAATATATAAT+AGG + chr1_1:67004393-67004412 None:intergenic 5.0%
AAATTGAGTGCCATGGTCGG+AGG + chr1_1:67001586-67001605 None:intergenic 50.0%
GGCAAATTGAGTGCCATGGT+CGG + chr1_1:67001589-67001608 None:intergenic 50.0%
CAGTGGCAAATTGAGTGCCA+TGG + chr1_1:67001593-67001612 None:intergenic 50.0%
! GGTTCTGGTTGGAAGAGAAG+AGG - chr1_1:67001760-67001779 Msa0037820:three_prime_UTR 50.0%
CCTCCTCTTCCACAACAAGT+TGG + chr1_1:67001987-67002006 None:intergenic 50.0%
!! CCAACTTGTTGTGGAAGAGG+AGG - chr1_1:67001984-67002003 Msa0037820:three_prime_UTR 50.0%
GCCTCAAGATGCTGATGGTT+GGG - chr1_1:67002017-67002036 Msa0037820:three_prime_UTR 50.0%
CCTCAAGATGCTGATGGTTG+GGG - chr1_1:67002018-67002037 Msa0037820:three_prime_UTR 50.0%
CGCACGAGAAAATATTCGGC+AGG + chr1_1:67002503-67002522 None:intergenic 50.0%
TACATGGTATCAGAGCCCCT+AGG - chr1_1:67002887-67002906 Msa0037820:intron 50.0%
!! TTTTGGGTGTCAAAGTGGCC+AGG - chr1_1:67003134-67003153 Msa0037820:intron 50.0%
! CATCGAGAGCACATTTGGGT+TGG + chr1_1:67003183-67003202 None:intergenic 50.0%
GTTGGTCAAGAAAAGGACCC+TGG + chr1_1:67003282-67003301 None:intergenic 50.0%
CAATTCGCAGTGCAGATGAG+TGG - chr1_1:67004639-67004658 Msa0037820:CDS 50.0%
! AACACGATGGTTTGGCTCCA+CGG + chr1_1:67004691-67004710 None:intergenic 50.0%
GGCCTCAAGATGCTGATGGT+TGG - chr1_1:67002016-67002035 Msa0037820:three_prime_UTR 55.0%
CCCCAACCATCAGCATCTTG+AGG + chr1_1:67002021-67002040 None:intergenic 55.0%
GATGGTTGGGGATTCAGCCT+TGG - chr1_1:67002030-67002049 Msa0037820:three_prime_UTR 55.0%
CATGAAGGCTGCTGAATGGG+AGG - chr1_1:67002182-67002201 Msa0037820:CDS 55.0%
GTATCAGAGCCCCTAGGTGT+TGG - chr1_1:67002893-67002912 Msa0037820:intron 55.0%
GGCTGTTTGATGTGTGACCG+TGG - chr1_1:67004929-67004948 Msa0037820:CDS 55.0%
ACCGTGGAAGCCATCACCTT+AGG - chr1_1:67004945-67004964 Msa0037820:CDS 55.0%
! GCCTAAGGTGATGGCTTCCA+CGG + chr1_1:67004949-67004968 None:intergenic 55.0%
GGAAGCCATCACCTTAGGCT+TGG - chr1_1:67004950-67004969 Msa0037820:CDS 55.0%
CCAAGCCAAGCCTAAGGTGA+TGG + chr1_1:67004958-67004977 None:intergenic 55.0%
CCATCACCTTAGGCTTGGCT+TGG - chr1_1:67004955-67004974 Msa0037820:CDS 55.0%
!! TCACCTTAGGCTTGGCTTGG+TGG - chr1_1:67004958-67004977 Msa0037820:CDS 55.0%
!! CACCTTAGGCTTGGCTTGGT+GGG - chr1_1:67004959-67004978 Msa0037820:CDS 55.0%
AACCCACCAAGCCAAGCCTA+AGG + chr1_1:67004964-67004983 None:intergenic 55.0%
GGCTGCCTAGTGTTCTCTGC+TGG + chr1_1:67001562-67001581 None:intergenic 60.0%
TTGAGTGCCATGGTCGGAGG+AGG + chr1_1:67001583-67001602 None:intergenic 60.0%
TAGGCAGCCTCCTCCGACCA+TGG - chr1_1:67001573-67001592 Msa0037820:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 67001540 67005321 67001540 ID=Msa0037820;Name=Msa0037820
chr1_1 mRNA 67001540 67005321 67001540 ID=Msa0037820-mRNA-1;Parent=Msa0037820;Name=Msa0037820-mRNA-1;_AED=0.08;_eAED=0.08;_QI=52|1|1|1|1|1|4|546|333
chr1_1 exon 67001540 67002222 67001540 ID=Msa0037820-mRNA-1:exon:21717;Parent=Msa0037820-mRNA-1
chr1_1 exon 67002332 67002443 67002332 ID=Msa0037820-mRNA-1:exon:21716;Parent=Msa0037820-mRNA-1
chr1_1 exon 67002553 67002634 67002553 ID=Msa0037820-mRNA-1:exon:21715;Parent=Msa0037820-mRNA-1
chr1_1 exon 67004599 67005321 67004599 ID=Msa0037820-mRNA-1:exon:21714;Parent=Msa0037820-mRNA-1
chr1_1 five_prime_UTR 67005270 67005321 67005270 ID=Msa0037820-mRNA-1:five_prime_utr;Parent=Msa0037820-mRNA-1
chr1_1 CDS 67004599 67005269 67004599 ID=Msa0037820-mRNA-1:cds;Parent=Msa0037820-mRNA-1
chr1_1 CDS 67002553 67002634 67002553 ID=Msa0037820-mRNA-1:cds;Parent=Msa0037820-mRNA-1
chr1_1 CDS 67002332 67002443 67002332 ID=Msa0037820-mRNA-1:cds;Parent=Msa0037820-mRNA-1
chr1_1 CDS 67002086 67002222 67002086 ID=Msa0037820-mRNA-1:cds;Parent=Msa0037820-mRNA-1
chr1_1 three_prime_UTR 67001540 67002085 67001540 ID=Msa0037820-mRNA-1:three_prime_utr;Parent=Msa0037820-mRNA-1
Gene Sequence

>Msa0037820

ATGGCACTCAATTTGCCACTGTCATCAATGAAACATATAAACTTCAACGAGAAACCCAATTCATTTTCTCTTTACAACAAACTCTTCAACCGGAAGACCCTTTTCTCAAACCCCACTTTACAGGTTAATGATTCCAAACTAACAAGAGTTCAATCACTCAAATCTGATGGTTCTGGTTGGAAGAGAAGAGGTAAAGAATCATACAGTGACAGTGATGATAGCGACGATGAAGATGAGGCACCGAAACAAAATGACCCTTATGTTATGACTCTTGAAGAGAGACAAGAATGGAGAAGAAAAATCAGACAGGTTATGGATAAGAAACCTCAAGTTCAAGAAGTTGTAGACACCGAGGAAAAGAAGAAGAAAATGCAAAAGCTAATTAATGATTACCAACTTGTTGTGGAAGAGGAGGATCCTAATTGGCCTCAAGATGCTGATGGTTGGGGATTCAGCCTTGGACAGTTTTTCGACAAGATTACAATACAAAACAAAAAGAAGGAAGATAATGATGATGCCGAGGACGATGATGTTGATGATGATAAGCCGATAGTGTGGCAAGATGATAATTACATTCGTCCTATTAAAGACATGAAGGCTGCTGAATGGGAGGAAACTGTGTTCAAAGATATTAGTCCCTTGATTATTCTTGTCCACAATCGTTATAGAAGGCCAAAGGACAATGAAAAAATTCGAGAAGAACTAGAGAAGGCTGTGCATATCATATGGAACTGCAGATTACCCTCACCAAGATGTGTGGCACTTGACGCTGTTGTTGAGACTGAACTAGTTGCTGCACTTAAAGTATCGGTTTTCCCAGAAGTTATCTTTACTAAAGCAGGGAAGATTTTATACCGTGATAAAGCAATTCGCAGTGCAGATGAGTGGTCAAAAATCATGGCATTTTTTTACTACCGTGGAGCCAAACCATCGTGTTTGACTAACATTTCAGATTTCCAGGAAAACATTCCTTCTTTTACCATTGACAATCCAGTGTTCTGA

Protein sequence

>Msa0037820

MALNLPLSSMKHINFNEKPNSFSLYNKLFNRKTLFSNPTLQVNDSKLTRVQSLKSDGSGWKRRGKESYSDSDDSDDEDEAPKQNDPYVMTLEERQEWRRKIRQVMDKKPQVQEVVDTEEKKKKMQKLINDYQLVVEEEDPNWPQDADGWGFSLGQFFDKITIQNKKKEDNDDAEDDDVDDDKPIVWQDDNYIRPIKDMKAAEWEETVFKDISPLIILVHNRYRRPKDNEKIREELEKAVHIIWNCRLPSPRCVALDAVVETELVAALKVSVFPEVIFTKAGKILYRDKAIRSADEWSKIMAFFYYRGAKPSCLTNISDFQENIPSFTIDNPVF*