Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313790 | PNX95886.1 | 83.976 | 337 | 52 | 2 | 1 | 337 | 1 | 335 | 0.0 | 569 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313790 | sp|Q9FJ47|SAG12_ARATH | 48.182 | 330 | 162 | 6 | 15 | 337 | 19 | 346 | 2.43e-107 | 320 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014790 | Msa0313790 | 0.805384 | 1.369836e-49 | -8.615850e-47 |
| Msa0021460 | Msa0313790 | 0.804046 | 2.606578e-49 | -8.615850e-47 |
| Msa0109970 | Msa0313790 | 0.803083 | 4.127962e-49 | -8.615850e-47 |
| Msa0109990 | Msa0313790 | 0.820015 | 8.574057e-53 | -8.615850e-47 |
| Msa0142230 | Msa0313790 | 0.805289 | 1.434706e-49 | -8.615850e-47 |
| Msa0156170 | Msa0313790 | 0.803981 | 2.689321e-49 | -8.615850e-47 |
| Msa0211670 | Msa0313790 | 0.824971 | 6.042977e-54 | -8.615850e-47 |
| Msa0232860 | Msa0313790 | 0.808413 | 3.136060e-50 | -8.615850e-47 |
| Msa0273560 | Msa0313790 | 0.841638 | 4.209908e-58 | -8.615850e-47 |
| Msa0313790 | Msa0456370 | 0.813960 | 1.964622e-51 | -8.615850e-47 |
| Msa0313790 | Msa0481320 | 0.824037 | 1.002836e-53 | -8.615850e-47 |
| Msa0313790 | Msa0752580 | 0.826812 | 2.208426e-54 | -8.615850e-47 |
| Msa0313790 | Msa0754180 | 0.815993 | 6.952669e-52 | -8.615850e-47 |
| Msa0313790 | Msa0754500 | 0.821092 | 4.850982e-53 | -8.615850e-47 |
| Msa0313790 | Msa0818030 | 0.806537 | 7.839810e-50 | -8.615850e-47 |
| Msa0313790 | Msa0830900 | 0.817879 | 2.622243e-52 | -8.615850e-47 |
| Msa0313790 | Msa1008340 | 0.809723 | 1.643428e-50 | -8.615850e-47 |
| Msa0313790 | Msa1049950 | 0.802956 | 4.386566e-49 | -8.615850e-47 |
| Msa0313790 | Msa1139240 | 0.807703 | 4.441287e-50 | -8.615850e-47 |
| Msa0313790 | Msa1238130 | 0.829989 | 3.779120e-55 | -8.615850e-47 |
| Msa0313790 | Msa1285820 | 0.807116 | 5.915839e-50 | -8.615850e-47 |
| Msa0313790 | Msa1405650 | 0.800708 | 1.269510e-48 | -8.615850e-47 |
| Msa0313790 | Msa1406600 | 0.818814 | 1.610455e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313790 | MtrunA17_Chr2g0283671 | 85.217 | 230 | 32 | 2 | 108 | 337 | 1 | 228 | 3.63e-135 | 383 |
| Msa0313790 | MtrunA17_Chr4g0060251 | 53.372 | 341 | 151 | 6 | 1 | 336 | 7 | 344 | 4.52e-124 | 360 |
| Msa0313790 | MtrunA17_Chr5g0405751 | 54.006 | 337 | 146 | 6 | 4 | 336 | 12 | 343 | 6.91e-124 | 359 |
| Msa0313790 | MtrunA17_Chr4g0041061 | 55.521 | 326 | 136 | 7 | 16 | 336 | 23 | 344 | 1.89e-123 | 358 |
| Msa0313790 | MtrunA17_Chr4g0041081 | 54.908 | 326 | 138 | 7 | 16 | 336 | 23 | 344 | 3.25e-123 | 357 |
| Msa0313790 | MtrunA17_Chr4g0040881 | 55.521 | 326 | 136 | 7 | 16 | 336 | 23 | 344 | 8.78e-123 | 356 |
| Msa0313790 | MtrunA17_Chr4g0024411 | 53.846 | 325 | 142 | 6 | 16 | 336 | 22 | 342 | 4.38e-118 | 344 |
| Msa0313790 | MtrunA17_Chr2g0315491 | 51.613 | 341 | 150 | 6 | 1 | 336 | 10 | 340 | 1.05e-115 | 338 |
| Msa0313790 | MtrunA17_Chr4g0041471 | 45.994 | 337 | 175 | 7 | 3 | 335 | 7 | 340 | 5.09e-108 | 318 |
| Msa0313790 | MtrunA17_Chr4g0041521 | 49.689 | 322 | 151 | 7 | 19 | 336 | 25 | 339 | 1.97e-104 | 310 |
| Msa0313790 | MtrunA17_Chr4g0041481 | 49.068 | 322 | 153 | 7 | 19 | 336 | 25 | 339 | 4.09e-104 | 308 |
| Msa0313790 | MtrunA17_Chr2g0311471 | 48.851 | 348 | 159 | 10 | 1 | 334 | 1 | 343 | 3.22e-100 | 299 |
| Msa0313790 | MtrunA17_Chr7g0248391 | 47.436 | 312 | 152 | 3 | 28 | 337 | 37 | 338 | 6.98e-100 | 298 |
| Msa0313790 | MtrunA17_Chr1g0208261 | 48.896 | 317 | 152 | 7 | 25 | 335 | 82 | 394 | 5.38e-97 | 296 |
| Msa0313790 | MtrunA17_Chr2g0311381 | 46.240 | 359 | 163 | 13 | 1 | 337 | 1 | 351 | 9.54e-97 | 290 |
| Msa0313790 | MtrunA17_Chr2g0283661 | 82.911 | 158 | 27 | 0 | 1 | 158 | 1 | 158 | 1.04e-96 | 287 |
| Msa0313790 | MtrunA17_Chr2g0283661 | 68.103 | 116 | 37 | 0 | 222 | 337 | 157 | 272 | 1.40e-50 | 169 |
| Msa0313790 | MtrunA17_Chr4g0040851 | 44.186 | 344 | 173 | 8 | 3 | 337 | 27 | 360 | 1.88e-95 | 287 |
| Msa0313790 | MtrunA17_Chr7g0248811 | 45.045 | 333 | 169 | 6 | 9 | 337 | 14 | 336 | 2.74e-95 | 286 |
| Msa0313790 | MtrunA17_Chr3g0144281 | 45.397 | 315 | 163 | 7 | 25 | 336 | 39 | 347 | 2.74e-93 | 281 |
| Msa0313790 | MtrunA17_Chr3g0116551 | 42.353 | 340 | 188 | 7 | 1 | 335 | 7 | 343 | 1.13e-92 | 280 |
| Msa0313790 | MtrunA17_Chr3g0134231 | 44.012 | 334 | 176 | 8 | 10 | 335 | 30 | 360 | 5.41e-92 | 282 |
| Msa0313790 | MtrunA17_Chr2g0319991 | 43.711 | 318 | 170 | 5 | 27 | 337 | 29 | 344 | 5.70e-92 | 278 |
| Msa0313790 | MtrunA17_Chr4g0053311 | 41.716 | 338 | 188 | 7 | 4 | 335 | 6 | 340 | 2.54e-90 | 274 |
| Msa0313790 | MtrunA17_Chr2g0325121 | 42.442 | 344 | 180 | 8 | 1 | 335 | 1 | 335 | 3.74e-90 | 273 |
| Msa0313790 | MtrunA17_Chr3g0142071 | 46.580 | 307 | 158 | 5 | 34 | 336 | 51 | 355 | 9.26e-90 | 276 |
| Msa0313790 | MtrunA17_Chr4g0058081 | 43.323 | 337 | 180 | 9 | 5 | 335 | 11 | 342 | 1.08e-88 | 270 |
| Msa0313790 | MtrunA17_Chr2g0311391 | 42.632 | 380 | 165 | 15 | 1 | 336 | 1 | 371 | 3.37e-87 | 266 |
| Msa0313790 | MtrunA17_Chr1g0153011 | 42.727 | 330 | 166 | 8 | 10 | 335 | 31 | 341 | 1.66e-82 | 257 |
| Msa0313790 | MtrunA17_Chr2g0283901 | 43.034 | 323 | 173 | 7 | 20 | 336 | 38 | 355 | 1.00e-78 | 248 |
| Msa0313790 | MtrunA17_Chr1g0156161 | 48.333 | 240 | 116 | 5 | 99 | 334 | 26 | 261 | 1.18e-72 | 226 |
| Msa0313790 | MtrunA17_Chr2g0283741 | 38.344 | 326 | 187 | 8 | 18 | 335 | 38 | 357 | 7.26e-71 | 225 |
| Msa0313790 | MtrunA17_Chr8g0379151 | 38.810 | 353 | 192 | 12 | 1 | 336 | 27 | 372 | 1.89e-68 | 219 |
| Msa0313790 | MtrunA17_Chr0c27g0493921 | 40.854 | 328 | 168 | 13 | 20 | 337 | 38 | 349 | 1.87e-66 | 213 |
| Msa0313790 | MtrunA17_Chr4g0035551 | 35.556 | 360 | 191 | 12 | 3 | 333 | 6 | 353 | 2.40e-64 | 207 |
| Msa0313790 | MtrunA17_Chr4g0070441 | 41.176 | 306 | 158 | 11 | 20 | 315 | 38 | 331 | 8.78e-63 | 203 |
| Msa0313790 | MtrunA17_Chr1g0155781 | 37.576 | 330 | 173 | 12 | 25 | 333 | 40 | 357 | 7.99e-61 | 198 |
| Msa0313790 | MtrunA17_Chr2g0311091 | 51.630 | 184 | 76 | 2 | 1 | 171 | 1 | 184 | 6.96e-59 | 187 |
| Msa0313790 | MtrunA17_Chr1g0199131 | 37.539 | 317 | 167 | 13 | 36 | 333 | 59 | 363 | 1.24e-56 | 188 |
| Msa0313790 | MtrunA17_Chr4g0036731 | 33.333 | 321 | 173 | 11 | 18 | 333 | 33 | 317 | 4.35e-44 | 154 |
| Msa0313790 | MtrunA17_Chr7g0248421 | 48.052 | 154 | 74 | 2 | 145 | 296 | 57 | 206 | 1.55e-42 | 146 |
| Msa0313790 | MtrunA17_Chr4g0036281 | 31.481 | 324 | 179 | 10 | 18 | 333 | 33 | 321 | 3.08e-42 | 149 |
| Msa0313790 | MtrunA17_Chr4g0037291 | 31.481 | 324 | 179 | 10 | 18 | 333 | 74 | 362 | 7.59e-42 | 149 |
| Msa0313790 | MtrunA17_Chr2g0283751 | 34.630 | 257 | 150 | 8 | 18 | 265 | 38 | 285 | 4.38e-41 | 145 |
| Msa0313790 | MtrunA17_Chr7g0248371 | 54.639 | 97 | 44 | 0 | 239 | 335 | 34 | 130 | 2.38e-32 | 118 |
| Msa0313790 | MtrunA17_Chr1g0156771 | 46.154 | 117 | 59 | 3 | 99 | 211 | 32 | 148 | 2.18e-28 | 108 |
| Msa0313790 | MtrunA17_Chr7g0271041 | 30.492 | 305 | 176 | 13 | 50 | 328 | 36 | 330 | 2.91e-28 | 112 |
| Msa0313790 | MtrunA17_Chr7g0271031 | 29.268 | 328 | 193 | 15 | 38 | 336 | 67 | 384 | 8.61e-28 | 112 |
| Msa0313790 | MtrunA17_Chr1g0167291 | 52.041 | 98 | 43 | 2 | 1 | 94 | 1 | 98 | 6.91e-27 | 102 |
| Msa0313790 | MtrunA17_Chr7g0248661 | 56.757 | 74 | 32 | 0 | 262 | 335 | 2 | 75 | 5.07e-24 | 93.6 |
| Msa0313790 | MtrunA17_Chr1g0147901 | 50.538 | 93 | 39 | 4 | 4 | 90 | 3 | 94 | 1.28e-19 | 84.0 |
| Msa0313790 | MtrunA17_Chr4g0011011 | 52.778 | 72 | 30 | 2 | 4 | 71 | 3 | 74 | 7.23e-18 | 77.4 |
| Msa0313790 | MtrunA17_Chr8g0379671 | 37.692 | 130 | 69 | 6 | 162 | 288 | 23 | 143 | 2.11e-17 | 78.6 |
| Msa0313790 | MtrunA17_Chr1g0156701 | 38.318 | 107 | 51 | 3 | 1 | 93 | 1 | 106 | 2.13e-17 | 77.4 |
| Msa0313790 | MtrunA17_Chr1g0156691 | 37.755 | 98 | 46 | 3 | 1 | 84 | 1 | 97 | 3.61e-16 | 73.2 |
| Msa0313790 | MtrunA17_Chr3g0120601 | 26.442 | 208 | 129 | 8 | 125 | 314 | 4 | 205 | 3.08e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313790 | AT2G34080.1 | 52.187 | 343 | 151 | 7 | 3 | 335 | 4 | 343 | 2.87e-123 | 358 |
| Msa0313790 | AT2G27420.1 | 50.292 | 342 | 160 | 6 | 4 | 335 | 5 | 346 | 9.48e-114 | 334 |
| Msa0313790 | AT3G49340.1 | 49.853 | 339 | 158 | 6 | 3 | 335 | 7 | 339 | 3.65e-113 | 332 |
| Msa0313790 | AT1G29090.1 | 51.562 | 320 | 145 | 7 | 23 | 335 | 37 | 353 | 1.37e-110 | 326 |
| Msa0313790 | AT1G29080.1 | 49.288 | 351 | 155 | 8 | 1 | 335 | 1 | 344 | 2.44e-110 | 325 |
| Msa0313790 | AT5G45890.1 | 48.182 | 330 | 162 | 6 | 15 | 337 | 19 | 346 | 2.47e-108 | 320 |
| Msa0313790 | AT3G19390.1 | 43.440 | 343 | 175 | 5 | 3 | 336 | 13 | 345 | 5.70e-97 | 295 |
| Msa0313790 | AT4G35350.1 | 45.376 | 346 | 171 | 9 | 3 | 336 | 13 | 352 | 1.06e-96 | 291 |
| Msa0313790 | AT4G23520.1 | 44.886 | 352 | 173 | 8 | 1 | 335 | 1 | 348 | 1.27e-95 | 288 |
| Msa0313790 | AT1G20850.1 | 46.667 | 315 | 161 | 7 | 25 | 336 | 43 | 353 | 1.53e-95 | 288 |
| Msa0313790 | AT3G48340.1 | 45.882 | 340 | 172 | 10 | 3 | 335 | 8 | 342 | 5.35e-95 | 286 |
| Msa0313790 | AT1G29110.1 | 47.678 | 323 | 145 | 10 | 23 | 337 | 28 | 334 | 6.82e-95 | 285 |
| Msa0313790 | AT5G43060.1 | 46.372 | 317 | 158 | 7 | 25 | 335 | 42 | 352 | 2.66e-93 | 286 |
| Msa0313790 | AT5G50260.1 | 44.575 | 341 | 177 | 8 | 3 | 335 | 5 | 341 | 3.73e-93 | 282 |
| Msa0313790 | AT1G47128.1 | 43.492 | 315 | 169 | 7 | 25 | 335 | 42 | 351 | 2.38e-90 | 278 |
| Msa0313790 | AT1G09850.1 | 46.452 | 310 | 158 | 6 | 29 | 335 | 28 | 332 | 2.52e-89 | 275 |
| Msa0313790 | AT4G11310.1 | 39.944 | 358 | 176 | 7 | 3 | 335 | 8 | 351 | 6.32e-88 | 268 |
| Msa0313790 | AT3G19400.1 | 43.354 | 316 | 172 | 5 | 25 | 336 | 36 | 348 | 1.53e-87 | 268 |
| Msa0313790 | AT4G36880.1 | 42.857 | 329 | 175 | 8 | 18 | 335 | 34 | 360 | 2.01e-87 | 268 |
| Msa0313790 | AT3G48350.1 | 42.012 | 338 | 189 | 6 | 4 | 336 | 8 | 343 | 4.25e-87 | 266 |
| Msa0313790 | AT4G11320.2 | 42.038 | 314 | 158 | 5 | 34 | 335 | 57 | 358 | 3.87e-85 | 261 |
| Msa0313790 | AT4G11320.1 | 42.038 | 314 | 158 | 5 | 34 | 335 | 57 | 358 | 3.87e-85 | 261 |
| Msa0313790 | AT1G06260.1 | 43.976 | 332 | 168 | 9 | 15 | 335 | 17 | 341 | 1.12e-83 | 257 |
| Msa0313790 | AT3G43960.1 | 43.849 | 317 | 168 | 7 | 25 | 335 | 33 | 345 | 1.92e-81 | 252 |
| Msa0313790 | AT5G60360.1 | 42.769 | 325 | 166 | 12 | 20 | 337 | 46 | 357 | 1.16e-69 | 221 |
| Msa0313790 | AT5G60360.2 | 42.462 | 325 | 166 | 13 | 20 | 337 | 46 | 356 | 5.06e-67 | 214 |
| Msa0313790 | AT4G35350.2 | 43.011 | 279 | 142 | 8 | 1 | 267 | 11 | 284 | 3.94e-66 | 210 |
| Msa0313790 | AT4G39090.1 | 38.462 | 312 | 164 | 9 | 39 | 333 | 57 | 357 | 1.95e-65 | 211 |
| Msa0313790 | AT5G60360.3 | 42.574 | 303 | 158 | 10 | 20 | 315 | 46 | 339 | 2.82e-65 | 210 |
| Msa0313790 | AT3G45310.1 | 39.577 | 331 | 164 | 12 | 22 | 337 | 48 | 357 | 1.37e-62 | 203 |
| Msa0313790 | AT2G21430.1 | 38.462 | 312 | 164 | 10 | 39 | 333 | 54 | 354 | 6.29e-62 | 202 |
| Msa0313790 | AT3G45310.2 | 39.275 | 331 | 164 | 13 | 22 | 337 | 48 | 356 | 4.05e-60 | 197 |
| Msa0313790 | AT3G19400.2 | 41.949 | 236 | 132 | 3 | 25 | 257 | 36 | 269 | 2.02e-59 | 193 |
| Msa0313790 | AT4G16190.1 | 38.636 | 308 | 161 | 10 | 39 | 328 | 61 | 358 | 3.25e-58 | 192 |
| Msa0313790 | AT3G54940.2 | 38.053 | 339 | 168 | 16 | 18 | 333 | 40 | 359 | 8.93e-57 | 188 |
| Msa0313790 | AT3G48350.2 | 38.235 | 272 | 161 | 6 | 4 | 270 | 8 | 277 | 3.42e-55 | 182 |
| Msa0313790 | AT3G54940.3 | 37.826 | 230 | 124 | 8 | 36 | 253 | 54 | 276 | 5.29e-41 | 145 |
| Msa0313790 | AT1G02305.1 | 30.405 | 296 | 166 | 11 | 62 | 328 | 49 | 333 | 7.14e-30 | 117 |
| Msa0313790 | AT4G01610.1 | 30.892 | 314 | 172 | 14 | 47 | 328 | 30 | 330 | 1.01e-29 | 117 |
| Msa0313790 | AT4G01610.2 | 30.255 | 314 | 174 | 14 | 47 | 328 | 30 | 330 | 9.59e-28 | 111 |
| Msa0313790 | AT1G02300.1 | 32.381 | 210 | 116 | 8 | 140 | 328 | 146 | 350 | 1.84e-22 | 97.4 |
| Msa0313790 | AT2G22160.1 | 41.667 | 96 | 45 | 4 | 49 | 140 | 10 | 98 | 1.18e-13 | 66.6 |
Find 76 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTCATTTGATCATTTAAT+TGG | 0.228760 | 2_4:+9241041 | None:intergenic |
| TTGTTGGAATATCATCATTC+AGG | 0.284103 | 2_4:+9242112 | None:intergenic |
| AAGCGAAGAGCTTCATTAAA+AGG | 0.287022 | 2_4:+9240610 | None:intergenic |
| TACATGGGAGGGGTTTATTC+AGG | 0.303096 | 2_4:-9240899 | Msa0313790:CDS |
| ATTGGTTGATTAAGAATTCT+TGG | 0.312011 | 2_4:-9240805 | Msa0313790:CDS |
| TTAAATCAGAGTATGGATTT+AGG | 0.312768 | 2_4:+9242226 | None:intergenic |
| CAGCAATGGATGATAAAATA+TGG | 0.313356 | 2_4:-9242360 | Msa0313790:CDS |
| TCACTAGTTAAATCAGAGTA+TGG | 0.325666 | 2_4:+9242219 | None:intergenic |
| GAGTTTATTGCTTCACATAC+TGG | 0.326687 | 2_4:-9242195 | Msa0313790:CDS |
| GAATTCTTGGGGTAAAGGTT+GGG | 0.335985 | 2_4:-9240792 | Msa0313790:CDS |
| GACAGTGTTCTTGACATGAT+TGG | 0.347406 | 2_4:+9242408 | None:intergenic |
| GCAGCAACGGCATGGTTAAA+TGG | 0.348206 | 2_4:+9240863 | None:intergenic |
| AGAATTCTTGGGGTAAAGGT+TGG | 0.362686 | 2_4:-9240793 | Msa0313790:CDS |
| TTGGTTGATTAAGAATTCTT+GGG | 0.374775 | 2_4:-9240804 | Msa0313790:CDS |
| GGGGTGTGGTGGAGGTTATA+TGG | 0.378728 | 2_4:-9241149 | Msa0313790:CDS |
| ATTAAGAATTCTTGGGGTAA+AGG | 0.390430 | 2_4:-9240797 | Msa0313790:CDS |
| TGCTTCACTAACAATACCTT+GGG | 0.396154 | 2_4:+9241099 | None:intergenic |
| CTCATTATCTGAGCAACAAT+TGG | 0.401955 | 2_4:-9241194 | Msa0313790:CDS |
| TGTTTGCATGATTATCTTGT+GGG | 0.419752 | 2_4:-9242442 | Msa0313790:CDS |
| TCAGCCGTGGCTGCTGTAGA+AGG | 0.422625 | 2_4:-9241247 | Msa0313790:CDS |
| TGTCTCCAATCAAAATTTGT+TGG | 0.429280 | 2_4:+9242096 | None:intergenic |
| TAGTAGTTGTTGTTCATCAT+TGG | 0.437687 | 2_4:+9240982 | None:intergenic |
| AATTCTTGGGGTAAAGGTTG+GGG | 0.440306 | 2_4:-9240791 | Msa0313790:CDS |
| ACAGTGTTCTTGACATGATT+GGG | 0.450300 | 2_4:+9242409 | None:intergenic |
| GGTAAAGGTTGGGGTGAAGA+AGG | 0.468643 | 2_4:-9240782 | Msa0313790:CDS |
| CAAAACATGGGGTGTGGTGG+AGG | 0.469183 | 2_4:-9241157 | Msa0313790:CDS |
| AATATCATCATTCAGGTTGA+AGG | 0.470988 | 2_4:+9242119 | None:intergenic |
| ACATCAATGCCAACGGATAC+CGG | 0.473186 | 2_4:+9240941 | None:intergenic |
| TACTGCAACTGACCTCATCT+TGG | 0.480728 | 2_4:+9242143 | None:intergenic |
| AATGTGTTGTAGGATGTTGC+TGG | 0.485970 | 2_4:-9241276 | Msa0313790:intron |
| GCCGTTGCTGCAGTTGGTTA+CGG | 0.486751 | 2_4:-9240851 | Msa0313790:CDS |
| AACCATGCCGTTGCTGCAGT+TGG | 0.486936 | 2_4:-9240857 | Msa0313790:CDS |
| AGTTGTTGTTCATCATTGGC+AGG | 0.488374 | 2_4:+9240986 | None:intergenic |
| CTGCTTCACTAACAATACCT+TGG | 0.494538 | 2_4:+9241098 | None:intergenic |
| AGGCTACATGAAAGTGTTGA+GGG | 0.498958 | 2_4:-9240762 | Msa0313790:CDS |
| TATAGTTACCACAACTGCCT+TGG | 0.504428 | 2_4:+9242046 | None:intergenic |
| TGGTTAAATGGTTGTCCACA+TGG | 0.507427 | 2_4:+9240875 | None:intergenic |
| CTGTTTGCATGATTATCTTG+TGG | 0.513337 | 2_4:-9242443 | Msa0313790:CDS |
| ATAGAGAATTTCAACAATGC+TGG | 0.520071 | 2_4:-9242270 | Msa0313790:CDS |
| GTCTGACTAACTCCTTGGTA+TGG | 0.521450 | 2_4:+9241070 | None:intergenic |
| GGTTTGTATTATATATCTGA+AGG | 0.526943 | 2_4:+9241120 | None:intergenic |
| GGTTACGGTGTAAGTGAAGA+TGG | 0.532156 | 2_4:-9240836 | Msa0313790:CDS |
| GTGAAGATGGAACTAAGTAT+TGG | 0.533019 | 2_4:-9240823 | Msa0313790:CDS |
| GGACAAAACATGGGGTGTGG+TGG | 0.537239 | 2_4:-9241160 | Msa0313790:CDS |
| ACCGTAACCAACTGCAGCAA+CGG | 0.545610 | 2_4:+9240850 | None:intergenic |
| ATGTCGTCTGACTAACTCCT+TGG | 0.546971 | 2_4:+9241065 | None:intergenic |
| TGCAACTGACCTCATCTTGG+AGG | 0.547643 | 2_4:+9242146 | None:intergenic |
| CAACAATTGGTTGACTGTGA+TGG | 0.554299 | 2_4:-9241181 | Msa0313790:CDS |
| ATGTGTTGTAGGATGTTGCT+GGG | 0.555048 | 2_4:-9241275 | Msa0313790:intron |
| GTTAAAGACCAAGGCAGTTG+TGG | 0.558254 | 2_4:-9242054 | Msa0313790:intron |
| ACTGCCTTGGTCTTTAACAT+CGG | 0.570004 | 2_4:+9242059 | None:intergenic |
| GGTGTTGTGAAAATCAAGAC+TGG | 0.581120 | 2_4:-9241226 | Msa0313790:CDS |
| ATATCATCATTCAGGTTGAA+GGG | 0.586071 | 2_4:+9242120 | None:intergenic |
| TGGTTGATTAAGAATTCTTG+GGG | 0.586376 | 2_4:-9240803 | Msa0313790:CDS |
| TTGTTGAAGCACATCAGCAA+TGG | 0.588741 | 2_4:-9242374 | Msa0313790:CDS |
| TGACTGTGATGGACAAAACA+TGG | 0.589670 | 2_4:-9241170 | Msa0313790:CDS |
| AACCAACTGCAGCAACGGCA+TGG | 0.593202 | 2_4:+9240855 | None:intergenic |
| ATGAAAGTGTTGAGGGAAAG+TGG | 0.597344 | 2_4:-9240755 | Msa0313790:CDS |
| ACAAGCAGTAGCACAACAGC+CGG | 0.607451 | 2_4:-9240960 | Msa0313790:CDS |
| GACTGTGATGGACAAAACAT+GGG | 0.608932 | 2_4:-9241169 | Msa0313790:CDS |
| AACACCTTCTACAGCAGCCA+CGG | 0.614533 | 2_4:+9241243 | None:intergenic |
| AAGGCTACATGAAAGTGTTG+AGG | 0.614540 | 2_4:-9240763 | Msa0313790:CDS |
| AACTTTCATCCTCCAAGATG+AGG | 0.620589 | 2_4:-9242155 | Msa0313790:CDS |
| GGTAACAAGAGTTACAAGCT+TGG | 0.620609 | 2_4:-9242249 | Msa0313790:CDS |
| GCACAACAGCCGGTATCCGT+TGG | 0.621605 | 2_4:-9240950 | Msa0313790:CDS |
| GTATCCGTTGGCATTGATGT+CGG | 0.626778 | 2_4:-9240938 | Msa0313790:CDS |
| GGGGTTTATTCAGGACCATG+TGG | 0.637962 | 2_4:-9240890 | Msa0313790:CDS |
| GATGGACAAAACATGGGGTG+TGG | 0.639515 | 2_4:-9241163 | Msa0313790:CDS |
| GGTGAACCTCGAGGTCATTG+TGG | 0.640065 | 2_4:-9240734 | Msa0313790:CDS |
| ATCACCGACATCAATGCCAA+CGG | 0.654937 | 2_4:+9240934 | None:intergenic |
| GAAGCAGATTATCCATACCA+AGG | 0.673721 | 2_4:-9241082 | Msa0313790:CDS |
| GTTACCGATGTTAAAGACCA+AGG | 0.675798 | 2_4:-9242063 | Msa0313790:CDS |
| AGATATATAATACAAACCCA+AGG | 0.685448 | 2_4:-9241115 | Msa0313790:CDS |
| AGGGAAAGTGGTGAACCTCG+AGG | 0.717507 | 2_4:-9240743 | Msa0313790:CDS |
| GCAATGCCACAATGACCTCG+AGG | 0.730880 | 2_4:+9240728 | None:intergenic |
| ACTGTGATGGACAAAACATG+GGG | 0.749382 | 2_4:-9241168 | Msa0313790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGTGATATAAAATAAAA+TGG | + | chr2_4:9241260-9241279 | None:intergenic | 10.0% |
| !!! | TTAGAAAAATATATGAATTT+TGG | + | chr2_4:9241458-9241477 | None:intergenic | 10.0% |
| !!! | AAAGTTACATTTTTATATTA+AGG | - | chr2_4:9241661-9241680 | Msa0313790:intron | 10.0% |
| !! | ATTCGTATAAAAATATTATA+TGG | + | chr2_4:9242410-9242429 | None:intergenic | 10.0% |
| !!! | TTTTGTGATATAAAATAAAA+TGG | + | chr2_4:9241260-9241279 | None:intergenic | 10.0% |
| !!! | TTAGAAAAATATATGAATTT+TGG | + | chr2_4:9241458-9241477 | None:intergenic | 10.0% |
| !!! | AAAGTTACATTTTTATATTA+AGG | - | chr2_4:9241661-9241680 | Msa0313790:intron | 10.0% |
| !! | ATTCGTATAAAAATATTATA+TGG | + | chr2_4:9242410-9242429 | None:intergenic | 10.0% |
| !!! | AATAAGAAACTTCATTTTTT+GGG | + | chr2_4:9240628-9240647 | None:intergenic | 15.0% |
| !!! | TATTTTTTAATTAGTCATCT+TGG | - | chr2_4:9241093-9241112 | Msa0313790:CDS | 15.0% |
| !! | TGATATAAAATAAAATGGAA+TGG | + | chr2_4:9241255-9241274 | None:intergenic | 15.0% |
| !! | GTATAAAAATATTATATGGT+GGG | + | chr2_4:9242406-9242425 | None:intergenic | 15.0% |
| !!! | AATAAGAAACTTCATTTTTT+GGG | + | chr2_4:9240628-9240647 | None:intergenic | 15.0% |
| !!! | TATTTTTTAATTAGTCATCT+TGG | - | chr2_4:9241093-9241112 | Msa0313790:CDS | 15.0% |
| !! | TGATATAAAATAAAATGGAA+TGG | + | chr2_4:9241255-9241274 | None:intergenic | 15.0% |
| !! | GTATAAAAATATTATATGGT+GGG | + | chr2_4:9242406-9242425 | None:intergenic | 15.0% |
| !!! | AAGATAATGTTTTGTGAAAA+AGG | + | chr2_4:9240581-9240600 | None:intergenic | 20.0% |
| !!! | ATAAGAAACTTCATTTTTTG+GGG | + | chr2_4:9240627-9240646 | None:intergenic | 20.0% |
| !!! | CAATAAGAAACTTCATTTTT+TGG | + | chr2_4:9240629-9240648 | None:intergenic | 20.0% |
| !!! | ATATTCCAACAAATTTTGAT+TGG | - | chr2_4:9240991-9241010 | Msa0313790:CDS | 20.0% |
| !! | TAAAATAAAATGGAATGGAA+TGG | + | chr2_4:9241250-9241269 | None:intergenic | 20.0% |
| !! | GAATATCGAAAAGATATTTA+AGG | - | chr2_4:9241550-9241569 | Msa0313790:intron | 20.0% |
| !!! | ATGTCATTTGATCATTTAAT+TGG | + | chr2_4:9242054-9242073 | None:intergenic | 20.0% |
| !! | CGTATAAAAATATTATATGG+TGG | + | chr2_4:9242407-9242426 | None:intergenic | 20.0% |
| !!! | AAGATAATGTTTTGTGAAAA+AGG | + | chr2_4:9240581-9240600 | None:intergenic | 20.0% |
| !!! | ATAAGAAACTTCATTTTTTG+GGG | + | chr2_4:9240627-9240646 | None:intergenic | 20.0% |
| !!! | CAATAAGAAACTTCATTTTT+TGG | + | chr2_4:9240629-9240648 | None:intergenic | 20.0% |
| !!! | ATATTCCAACAAATTTTGAT+TGG | - | chr2_4:9240991-9241010 | Msa0313790:CDS | 20.0% |
| !! | TAAAATAAAATGGAATGGAA+TGG | + | chr2_4:9241250-9241269 | None:intergenic | 20.0% |
| !! | GAATATCGAAAAGATATTTA+AGG | - | chr2_4:9241550-9241569 | Msa0313790:intron | 20.0% |
| !!! | ATGTCATTTGATCATTTAAT+TGG | + | chr2_4:9242054-9242073 | None:intergenic | 20.0% |
| !! | CGTATAAAAATATTATATGG+TGG | + | chr2_4:9242407-9242426 | None:intergenic | 20.0% |
| !!! | TAAGAAACTTCATTTTTTGG+GGG | + | chr2_4:9240626-9240645 | None:intergenic | 25.0% |
| ! | TTAAATCAGAGTATGGATTT+AGG | + | chr2_4:9240869-9240888 | None:intergenic | 25.0% |
| ! | TATGCTTCATTAAAAGTTCT+CGG | + | chr2_4:9241295-9241314 | None:intergenic | 25.0% |
| ! | GCATTATTGATGTGTTTATA+TGG | + | chr2_4:9241334-9241353 | None:intergenic | 25.0% |
| !! | AATATCTTTTCGATATTCGA+TGG | + | chr2_4:9241548-9241567 | None:intergenic | 25.0% |
| ! | GATATTATTCAATGTGTTGT+AGG | - | chr2_4:9241806-9241825 | Msa0313790:intron | 25.0% |
| ! | GGTTTGTATTATATATCTGA+AGG | + | chr2_4:9241975-9241994 | None:intergenic | 25.0% |
| ! | AGATATATAATACAAACCCA+AGG | - | chr2_4:9241977-9241996 | Msa0313790:intron | 25.0% |
| !! | TGATGATTTTAGACATTACA+TGG | - | chr2_4:9242177-9242196 | Msa0313790:CDS | 25.0% |
| !! | GATGATTTTAGACATTACAT+GGG | - | chr2_4:9242178-9242197 | Msa0313790:CDS | 25.0% |
| ! | ATTGGTTGATTAAGAATTCT+TGG | - | chr2_4:9242287-9242306 | Msa0313790:CDS | 25.0% |
| ! | TTGGTTGATTAAGAATTCTT+GGG | - | chr2_4:9242288-9242307 | Msa0313790:CDS | 25.0% |
| !!! | TAAGAAACTTCATTTTTTGG+GGG | + | chr2_4:9240626-9240645 | None:intergenic | 25.0% |
| ! | TTAAATCAGAGTATGGATTT+AGG | + | chr2_4:9240869-9240888 | None:intergenic | 25.0% |
| ! | TATGCTTCATTAAAAGTTCT+CGG | + | chr2_4:9241295-9241314 | None:intergenic | 25.0% |
| ! | GCATTATTGATGTGTTTATA+TGG | + | chr2_4:9241334-9241353 | None:intergenic | 25.0% |
| !! | AATATCTTTTCGATATTCGA+TGG | + | chr2_4:9241548-9241567 | None:intergenic | 25.0% |
| ! | GATATTATTCAATGTGTTGT+AGG | - | chr2_4:9241806-9241825 | Msa0313790:intron | 25.0% |
| ! | GGTTTGTATTATATATCTGA+AGG | + | chr2_4:9241975-9241994 | None:intergenic | 25.0% |
| ! | AGATATATAATACAAACCCA+AGG | - | chr2_4:9241977-9241996 | Msa0313790:intron | 25.0% |
| !! | TGATGATTTTAGACATTACA+TGG | - | chr2_4:9242177-9242196 | Msa0313790:CDS | 25.0% |
| !! | GATGATTTTAGACATTACAT+GGG | - | chr2_4:9242178-9242197 | Msa0313790:CDS | 25.0% |
| ! | ATTGGTTGATTAAGAATTCT+TGG | - | chr2_4:9242287-9242306 | Msa0313790:CDS | 25.0% |
| ! | TTGGTTGATTAAGAATTCTT+GGG | - | chr2_4:9242288-9242307 | Msa0313790:CDS | 25.0% |
| !!! | AAGAAACTTCATTTTTTGGG+GGG | + | chr2_4:9240625-9240644 | None:intergenic | 30.0% |
| TGTTTGCATGATTATCTTGT+GGG | - | chr2_4:9240650-9240669 | Msa0313790:three_prime_UTR | 30.0% | |
| CAGCAATGGATGATAAAATA+TGG | - | chr2_4:9240732-9240751 | Msa0313790:CDS | 30.0% | |
| ATAGAGAATTTCAACAATGC+TGG | - | chr2_4:9240822-9240841 | Msa0313790:CDS | 30.0% | |
| TCACTAGTTAAATCAGAGTA+TGG | + | chr2_4:9240876-9240895 | None:intergenic | 30.0% | |
| !! | ATATCATCATTCAGGTTGAA+GGG | + | chr2_4:9240975-9240994 | None:intergenic | 30.0% |
| !! | AATATCATCATTCAGGTTGA+AGG | + | chr2_4:9240976-9240995 | None:intergenic | 30.0% |
| TTGTTGGAATATCATCATTC+AGG | + | chr2_4:9240983-9241002 | None:intergenic | 30.0% | |
| TGTCTCCAATCAAAATTTGT+TGG | + | chr2_4:9240999-9241018 | None:intergenic | 30.0% | |
| !!! | AATTTTGATTGGAGACAACA+AGG | - | chr2_4:9241002-9241021 | Msa0313790:CDS | 30.0% |
| TATTGGAGACTTTGTTAGTT+TGG | + | chr2_4:9241152-9241171 | None:intergenic | 30.0% | |
| AACAAAGTCTCCAATATGTT+TGG | - | chr2_4:9241156-9241175 | Msa0313790:CDS | 30.0% | |
| ! | CTCCAATATGTTTGGATTTT+CGG | - | chr2_4:9241164-9241183 | Msa0313790:CDS | 30.0% |
| TACCGAAAATCCAAACATAT+TGG | + | chr2_4:9241169-9241188 | None:intergenic | 30.0% | |
| ! | TGTTTGGATTTTCGGTATTA+AGG | - | chr2_4:9241172-9241191 | Msa0313790:CDS | 30.0% |
| GATGAATAAAGATAGAAGAC+TGG | + | chr2_4:9241526-9241545 | None:intergenic | 30.0% | |
| TATCTAGCACAAACACTAAT+CGG | + | chr2_4:9241610-9241629 | None:intergenic | 30.0% | |
| !! | TGTAATTTCTAGCCTTAGAT+AGG | + | chr2_4:9241692-9241711 | None:intergenic | 30.0% |
| ! | TAGTAGTTGTTGTTCATCAT+TGG | + | chr2_4:9242113-9242132 | None:intergenic | 30.0% |
| ! | ATTTTAGACATTACATGGGA+GGG | - | chr2_4:9242182-9242201 | Msa0313790:CDS | 30.0% |
| TGGTTGATTAAGAATTCTTG+GGG | - | chr2_4:9242289-9242308 | Msa0313790:CDS | 30.0% | |
| ATTAAGAATTCTTGGGGTAA+AGG | - | chr2_4:9242295-9242314 | Msa0313790:CDS | 30.0% | |
| !!! | AAGAAACTTCATTTTTTGGG+GGG | + | chr2_4:9240625-9240644 | None:intergenic | 30.0% |
| TGTTTGCATGATTATCTTGT+GGG | - | chr2_4:9240650-9240669 | Msa0313790:three_prime_UTR | 30.0% | |
| CAGCAATGGATGATAAAATA+TGG | - | chr2_4:9240732-9240751 | Msa0313790:CDS | 30.0% | |
| ATAGAGAATTTCAACAATGC+TGG | - | chr2_4:9240822-9240841 | Msa0313790:CDS | 30.0% | |
| TCACTAGTTAAATCAGAGTA+TGG | + | chr2_4:9240876-9240895 | None:intergenic | 30.0% | |
| !! | ATATCATCATTCAGGTTGAA+GGG | + | chr2_4:9240975-9240994 | None:intergenic | 30.0% |
| !! | AATATCATCATTCAGGTTGA+AGG | + | chr2_4:9240976-9240995 | None:intergenic | 30.0% |
| TTGTTGGAATATCATCATTC+AGG | + | chr2_4:9240983-9241002 | None:intergenic | 30.0% | |
| TGTCTCCAATCAAAATTTGT+TGG | + | chr2_4:9240999-9241018 | None:intergenic | 30.0% | |
| !!! | AATTTTGATTGGAGACAACA+AGG | - | chr2_4:9241002-9241021 | Msa0313790:CDS | 30.0% |
| TATTGGAGACTTTGTTAGTT+TGG | + | chr2_4:9241152-9241171 | None:intergenic | 30.0% | |
| AACAAAGTCTCCAATATGTT+TGG | - | chr2_4:9241156-9241175 | Msa0313790:CDS | 30.0% | |
| ! | CTCCAATATGTTTGGATTTT+CGG | - | chr2_4:9241164-9241183 | Msa0313790:CDS | 30.0% |
| TACCGAAAATCCAAACATAT+TGG | + | chr2_4:9241169-9241188 | None:intergenic | 30.0% | |
| ! | TGTTTGGATTTTCGGTATTA+AGG | - | chr2_4:9241172-9241191 | Msa0313790:CDS | 30.0% |
| GATGAATAAAGATAGAAGAC+TGG | + | chr2_4:9241526-9241545 | None:intergenic | 30.0% | |
| TATCTAGCACAAACACTAAT+CGG | + | chr2_4:9241610-9241629 | None:intergenic | 30.0% | |
| !! | TGTAATTTCTAGCCTTAGAT+AGG | + | chr2_4:9241692-9241711 | None:intergenic | 30.0% |
| ! | TAGTAGTTGTTGTTCATCAT+TGG | + | chr2_4:9242113-9242132 | None:intergenic | 30.0% |
| ! | ATTTTAGACATTACATGGGA+GGG | - | chr2_4:9242182-9242201 | Msa0313790:CDS | 30.0% |
| TGGTTGATTAAGAATTCTTG+GGG | - | chr2_4:9242289-9242308 | Msa0313790:CDS | 30.0% | |
| ATTAAGAATTCTTGGGGTAA+AGG | - | chr2_4:9242295-9242314 | Msa0313790:CDS | 30.0% | |
| CTGTTTGCATGATTATCTTG+TGG | - | chr2_4:9240649-9240668 | Msa0313790:three_prime_UTR | 35.0% | |
| ACAGTGTTCTTGACATGATT+GGG | + | chr2_4:9240686-9240705 | None:intergenic | 35.0% | |
| GAGTTTATTGCTTCACATAC+TGG | - | chr2_4:9240897-9240916 | Msa0313790:CDS | 35.0% | |
| TAATTAGTCATCTTGGAGCA+TGG | - | chr2_4:9241100-9241119 | Msa0313790:CDS | 35.0% | |
| GGTATTAAGGTTGAATGACA+TGG | - | chr2_4:9241185-9241204 | Msa0313790:CDS | 35.0% | |
| AAAAGTTCTCGGAGGATATT+TGG | + | chr2_4:9241284-9241303 | None:intergenic | 35.0% | |
| ATTAAGGAACCACCTATCTA+AGG | - | chr2_4:9241677-9241696 | Msa0313790:intron | 35.0% | |
| !! | AATTTCTAGCCTTAGATAGG+TGG | + | chr2_4:9241689-9241708 | None:intergenic | 35.0% |
| CTCATTATCTGAGCAACAAT+TGG | - | chr2_4:9241898-9241917 | Msa0313790:intron | 35.0% | |
| TGCTTCACTAACAATACCTT+GGG | + | chr2_4:9241996-9242015 | None:intergenic | 35.0% | |
| ! | GATTTTAGACATTACATGGG+AGG | - | chr2_4:9242181-9242200 | Msa0313790:CDS | 35.0% |
| ! | TTTTAGACATTACATGGGAG+GGG | - | chr2_4:9242183-9242202 | Msa0313790:CDS | 35.0% |
| GTGAAGATGGAACTAAGTAT+TGG | - | chr2_4:9242269-9242288 | Msa0313790:CDS | 35.0% | |
| AAGCGAAGAGCTTCATTAAA+AGG | + | chr2_4:9242485-9242504 | None:intergenic | 35.0% | |
| CTGTTTGCATGATTATCTTG+TGG | - | chr2_4:9240649-9240668 | Msa0313790:three_prime_UTR | 35.0% | |
| ACAGTGTTCTTGACATGATT+GGG | + | chr2_4:9240686-9240705 | None:intergenic | 35.0% | |
| GAGTTTATTGCTTCACATAC+TGG | - | chr2_4:9240897-9240916 | Msa0313790:CDS | 35.0% | |
| TAATTAGTCATCTTGGAGCA+TGG | - | chr2_4:9241100-9241119 | Msa0313790:CDS | 35.0% | |
| GGTATTAAGGTTGAATGACA+TGG | - | chr2_4:9241185-9241204 | Msa0313790:CDS | 35.0% | |
| AAAAGTTCTCGGAGGATATT+TGG | + | chr2_4:9241284-9241303 | None:intergenic | 35.0% | |
| ATTAAGGAACCACCTATCTA+AGG | - | chr2_4:9241677-9241696 | Msa0313790:intron | 35.0% | |
| !! | AATTTCTAGCCTTAGATAGG+TGG | + | chr2_4:9241689-9241708 | None:intergenic | 35.0% |
| CTCATTATCTGAGCAACAAT+TGG | - | chr2_4:9241898-9241917 | Msa0313790:intron | 35.0% | |
| TGCTTCACTAACAATACCTT+GGG | + | chr2_4:9241996-9242015 | None:intergenic | 35.0% | |
| ! | GATTTTAGACATTACATGGG+AGG | - | chr2_4:9242181-9242200 | Msa0313790:CDS | 35.0% |
| ! | TTTTAGACATTACATGGGAG+GGG | - | chr2_4:9242183-9242202 | Msa0313790:CDS | 35.0% |
| GTGAAGATGGAACTAAGTAT+TGG | - | chr2_4:9242269-9242288 | Msa0313790:CDS | 35.0% | |
| AAGCGAAGAGCTTCATTAAA+AGG | + | chr2_4:9242485-9242504 | None:intergenic | 35.0% | |
| GACAGTGTTCTTGACATGAT+TGG | + | chr2_4:9240687-9240706 | None:intergenic | 40.0% | |
| TTGTTGAAGCACATCAGCAA+TGG | - | chr2_4:9240718-9240737 | Msa0313790:CDS | 40.0% | |
| GGTAACAAGAGTTACAAGCT+TGG | - | chr2_4:9240843-9240862 | Msa0313790:CDS | 40.0% | |
| AACTTTCATCCTCCAAGATG+AGG | - | chr2_4:9240937-9240956 | Msa0313790:CDS | 40.0% | |
| GTTACCGATGTTAAAGACCA+AGG | - | chr2_4:9241029-9241048 | Msa0313790:CDS | 40.0% | |
| ! | ACTGCCTTGGTCTTTAACAT+CGG | + | chr2_4:9241036-9241055 | None:intergenic | 40.0% |
| TATAGTTACCACAACTGCCT+TGG | + | chr2_4:9241049-9241068 | None:intergenic | 40.0% | |
| GCTTCATTAAAAGTTCTCGG+AGG | + | chr2_4:9241292-9241311 | None:intergenic | 40.0% | |
| GCACAAACACTAATCGGATT+AGG | + | chr2_4:9241604-9241623 | None:intergenic | 40.0% | |
| AATGTGTTGTAGGATGTTGC+TGG | - | chr2_4:9241816-9241835 | Msa0313790:intron | 40.0% | |
| ATGTGTTGTAGGATGTTGCT+GGG | - | chr2_4:9241817-9241836 | Msa0313790:intron | 40.0% | |
| ! | GGTGTTGTGAAAATCAAGAC+TGG | - | chr2_4:9241866-9241885 | Msa0313790:intron | 40.0% |
| CAACAATTGGTTGACTGTGA+TGG | - | chr2_4:9241911-9241930 | Msa0313790:intron | 40.0% | |
| !! | TGACTGTGATGGACAAAACA+TGG | - | chr2_4:9241922-9241941 | Msa0313790:intron | 40.0% |
| !! | GACTGTGATGGACAAAACAT+GGG | - | chr2_4:9241923-9241942 | Msa0313790:intron | 40.0% |
| !! | ACTGTGATGGACAAAACATG+GGG | - | chr2_4:9241924-9241943 | Msa0313790:intron | 40.0% |
| CTGCTTCACTAACAATACCT+TGG | + | chr2_4:9241997-9242016 | None:intergenic | 40.0% | |
| GAAGCAGATTATCCATACCA+AGG | - | chr2_4:9242010-9242029 | Msa0313790:intron | 40.0% | |
| ! | AGTTGTTGTTCATCATTGGC+AGG | + | chr2_4:9242109-9242128 | None:intergenic | 40.0% |
| TGGTTAAATGGTTGTCCACA+TGG | + | chr2_4:9242220-9242239 | None:intergenic | 40.0% | |
| AGAATTCTTGGGGTAAAGGT+TGG | - | chr2_4:9242299-9242318 | Msa0313790:CDS | 40.0% | |
| GAATTCTTGGGGTAAAGGTT+GGG | - | chr2_4:9242300-9242319 | Msa0313790:CDS | 40.0% | |
| AATTCTTGGGGTAAAGGTTG+GGG | - | chr2_4:9242301-9242320 | Msa0313790:CDS | 40.0% | |
| !! | AAGGCTACATGAAAGTGTTG+AGG | - | chr2_4:9242329-9242348 | Msa0313790:CDS | 40.0% |
| !! | AGGCTACATGAAAGTGTTGA+GGG | - | chr2_4:9242330-9242349 | Msa0313790:CDS | 40.0% |
| !! | ATGAAAGTGTTGAGGGAAAG+TGG | - | chr2_4:9242337-9242356 | Msa0313790:CDS | 40.0% |
| GACAGTGTTCTTGACATGAT+TGG | + | chr2_4:9240687-9240706 | None:intergenic | 40.0% | |
| TTGTTGAAGCACATCAGCAA+TGG | - | chr2_4:9240718-9240737 | Msa0313790:CDS | 40.0% | |
| GGTAACAAGAGTTACAAGCT+TGG | - | chr2_4:9240843-9240862 | Msa0313790:CDS | 40.0% | |
| AACTTTCATCCTCCAAGATG+AGG | - | chr2_4:9240937-9240956 | Msa0313790:CDS | 40.0% | |
| GTTACCGATGTTAAAGACCA+AGG | - | chr2_4:9241029-9241048 | Msa0313790:CDS | 40.0% | |
| ! | ACTGCCTTGGTCTTTAACAT+CGG | + | chr2_4:9241036-9241055 | None:intergenic | 40.0% |
| TATAGTTACCACAACTGCCT+TGG | + | chr2_4:9241049-9241068 | None:intergenic | 40.0% | |
| GCTTCATTAAAAGTTCTCGG+AGG | + | chr2_4:9241292-9241311 | None:intergenic | 40.0% | |
| GCACAAACACTAATCGGATT+AGG | + | chr2_4:9241604-9241623 | None:intergenic | 40.0% | |
| AATGTGTTGTAGGATGTTGC+TGG | - | chr2_4:9241816-9241835 | Msa0313790:intron | 40.0% | |
| ATGTGTTGTAGGATGTTGCT+GGG | - | chr2_4:9241817-9241836 | Msa0313790:intron | 40.0% | |
| ! | GGTGTTGTGAAAATCAAGAC+TGG | - | chr2_4:9241866-9241885 | Msa0313790:intron | 40.0% |
| CAACAATTGGTTGACTGTGA+TGG | - | chr2_4:9241911-9241930 | Msa0313790:intron | 40.0% | |
| !! | TGACTGTGATGGACAAAACA+TGG | - | chr2_4:9241922-9241941 | Msa0313790:intron | 40.0% |
| !! | GACTGTGATGGACAAAACAT+GGG | - | chr2_4:9241923-9241942 | Msa0313790:intron | 40.0% |
| !! | ACTGTGATGGACAAAACATG+GGG | - | chr2_4:9241924-9241943 | Msa0313790:intron | 40.0% |
| CTGCTTCACTAACAATACCT+TGG | + | chr2_4:9241997-9242016 | None:intergenic | 40.0% | |
| GAAGCAGATTATCCATACCA+AGG | - | chr2_4:9242010-9242029 | Msa0313790:intron | 40.0% | |
| ! | AGTTGTTGTTCATCATTGGC+AGG | + | chr2_4:9242109-9242128 | None:intergenic | 40.0% |
| TGGTTAAATGGTTGTCCACA+TGG | + | chr2_4:9242220-9242239 | None:intergenic | 40.0% | |
| AGAATTCTTGGGGTAAAGGT+TGG | - | chr2_4:9242299-9242318 | Msa0313790:CDS | 40.0% | |
| GAATTCTTGGGGTAAAGGTT+GGG | - | chr2_4:9242300-9242319 | Msa0313790:CDS | 40.0% | |
| AATTCTTGGGGTAAAGGTTG+GGG | - | chr2_4:9242301-9242320 | Msa0313790:CDS | 40.0% | |
| !! | AAGGCTACATGAAAGTGTTG+AGG | - | chr2_4:9242329-9242348 | Msa0313790:CDS | 40.0% |
| !! | AGGCTACATGAAAGTGTTGA+GGG | - | chr2_4:9242330-9242349 | Msa0313790:CDS | 40.0% |
| !! | ATGAAAGTGTTGAGGGAAAG+TGG | - | chr2_4:9242337-9242356 | Msa0313790:CDS | 40.0% |
| TACTGCAACTGACCTCATCT+TGG | + | chr2_4:9240952-9240971 | None:intergenic | 45.0% | |
| GTTAAAGACCAAGGCAGTTG+TGG | - | chr2_4:9241038-9241057 | Msa0313790:CDS | 45.0% | |
| GTCTGACTAACTCCTTGGTA+TGG | + | chr2_4:9242025-9242044 | None:intergenic | 45.0% | |
| ATGTCGTCTGACTAACTCCT+TGG | + | chr2_4:9242030-9242049 | None:intergenic | 45.0% | |
| ACATCAATGCCAACGGATAC+CGG | + | chr2_4:9242154-9242173 | None:intergenic | 45.0% | |
| !! | GTATCCGTTGGCATTGATGT+CGG | - | chr2_4:9242154-9242173 | Msa0313790:CDS | 45.0% |
| ATCACCGACATCAATGCCAA+CGG | + | chr2_4:9242161-9242180 | None:intergenic | 45.0% | |
| TACATGGGAGGGGTTTATTC+AGG | - | chr2_4:9242193-9242212 | Msa0313790:CDS | 45.0% | |
| GGTTACGGTGTAAGTGAAGA+TGG | - | chr2_4:9242256-9242275 | Msa0313790:CDS | 45.0% | |
| TACTGCAACTGACCTCATCT+TGG | + | chr2_4:9240952-9240971 | None:intergenic | 45.0% | |
| GTTAAAGACCAAGGCAGTTG+TGG | - | chr2_4:9241038-9241057 | Msa0313790:CDS | 45.0% | |
| GTCTGACTAACTCCTTGGTA+TGG | + | chr2_4:9242025-9242044 | None:intergenic | 45.0% | |
| ATGTCGTCTGACTAACTCCT+TGG | + | chr2_4:9242030-9242049 | None:intergenic | 45.0% | |
| ACATCAATGCCAACGGATAC+CGG | + | chr2_4:9242154-9242173 | None:intergenic | 45.0% | |
| !! | GTATCCGTTGGCATTGATGT+CGG | - | chr2_4:9242154-9242173 | Msa0313790:CDS | 45.0% |
| ATCACCGACATCAATGCCAA+CGG | + | chr2_4:9242161-9242180 | None:intergenic | 45.0% | |
| TACATGGGAGGGGTTTATTC+AGG | - | chr2_4:9242193-9242212 | Msa0313790:CDS | 45.0% | |
| GGTTACGGTGTAAGTGAAGA+TGG | - | chr2_4:9242256-9242275 | Msa0313790:CDS | 45.0% | |
| TGCAACTGACCTCATCTTGG+AGG | + | chr2_4:9240949-9240968 | None:intergenic | 50.0% | |
| AACACCTTCTACAGCAGCCA+CGG | + | chr2_4:9241852-9241871 | None:intergenic | 50.0% | |
| GATGGACAAAACATGGGGTG+TGG | - | chr2_4:9241929-9241948 | Msa0313790:intron | 50.0% | |
| ACAAGCAGTAGCACAACAGC+CGG | - | chr2_4:9242132-9242151 | Msa0313790:CDS | 50.0% | |
| GGGGTTTATTCAGGACCATG+TGG | - | chr2_4:9242202-9242221 | Msa0313790:CDS | 50.0% | |
| GCAGCAACGGCATGGTTAAA+TGG | + | chr2_4:9242232-9242251 | None:intergenic | 50.0% | |
| ACCGTAACCAACTGCAGCAA+CGG | + | chr2_4:9242245-9242264 | None:intergenic | 50.0% | |
| GGTAAAGGTTGGGGTGAAGA+AGG | - | chr2_4:9242310-9242329 | Msa0313790:CDS | 50.0% | |
| TGCAACTGACCTCATCTTGG+AGG | + | chr2_4:9240949-9240968 | None:intergenic | 50.0% | |
| AACACCTTCTACAGCAGCCA+CGG | + | chr2_4:9241852-9241871 | None:intergenic | 50.0% | |
| GATGGACAAAACATGGGGTG+TGG | - | chr2_4:9241929-9241948 | Msa0313790:intron | 50.0% | |
| ACAAGCAGTAGCACAACAGC+CGG | - | chr2_4:9242132-9242151 | Msa0313790:CDS | 50.0% | |
| GGGGTTTATTCAGGACCATG+TGG | - | chr2_4:9242202-9242221 | Msa0313790:CDS | 50.0% | |
| GCAGCAACGGCATGGTTAAA+TGG | + | chr2_4:9242232-9242251 | None:intergenic | 50.0% | |
| ACCGTAACCAACTGCAGCAA+CGG | + | chr2_4:9242245-9242264 | None:intergenic | 50.0% | |
| GGTAAAGGTTGGGGTGAAGA+AGG | - | chr2_4:9242310-9242329 | Msa0313790:CDS | 50.0% | |
| ! | TTGCTGGGCATTTTCAGCCG+TGG | - | chr2_4:9241832-9241851 | Msa0313790:intron | 55.0% |
| GGACAAAACATGGGGTGTGG+TGG | - | chr2_4:9241932-9241951 | Msa0313790:intron | 55.0% | |
| CAAAACATGGGGTGTGGTGG+AGG | - | chr2_4:9241935-9241954 | Msa0313790:intron | 55.0% | |
| ! | GGGGTGTGGTGGAGGTTATA+TGG | - | chr2_4:9241943-9241962 | Msa0313790:intron | 55.0% |
| AACCATGCCGTTGCTGCAGT+TGG | - | chr2_4:9242235-9242254 | Msa0313790:CDS | 55.0% | |
| AACCAACTGCAGCAACGGCA+TGG | + | chr2_4:9242240-9242259 | None:intergenic | 55.0% | |
| GCCGTTGCTGCAGTTGGTTA+CGG | - | chr2_4:9242241-9242260 | Msa0313790:CDS | 55.0% | |
| AGGGAAAGTGGTGAACCTCG+AGG | - | chr2_4:9242349-9242368 | Msa0313790:CDS | 55.0% | |
| GGTGAACCTCGAGGTCATTG+TGG | - | chr2_4:9242358-9242377 | Msa0313790:CDS | 55.0% | |
| GCAATGCCACAATGACCTCG+AGG | + | chr2_4:9242367-9242386 | None:intergenic | 55.0% | |
| ! | TTGCTGGGCATTTTCAGCCG+TGG | - | chr2_4:9241832-9241851 | Msa0313790:intron | 55.0% |
| GGACAAAACATGGGGTGTGG+TGG | - | chr2_4:9241932-9241951 | Msa0313790:intron | 55.0% | |
| CAAAACATGGGGTGTGGTGG+AGG | - | chr2_4:9241935-9241954 | Msa0313790:intron | 55.0% | |
| ! | GGGGTGTGGTGGAGGTTATA+TGG | - | chr2_4:9241943-9241962 | Msa0313790:intron | 55.0% |
| AACCATGCCGTTGCTGCAGT+TGG | - | chr2_4:9242235-9242254 | Msa0313790:CDS | 55.0% | |
| AACCAACTGCAGCAACGGCA+TGG | + | chr2_4:9242240-9242259 | None:intergenic | 55.0% | |
| GCCGTTGCTGCAGTTGGTTA+CGG | - | chr2_4:9242241-9242260 | Msa0313790:CDS | 55.0% | |
| AGGGAAAGTGGTGAACCTCG+AGG | - | chr2_4:9242349-9242368 | Msa0313790:CDS | 55.0% | |
| GGTGAACCTCGAGGTCATTG+TGG | - | chr2_4:9242358-9242377 | Msa0313790:CDS | 55.0% | |
| GCAATGCCACAATGACCTCG+AGG | + | chr2_4:9242367-9242386 | None:intergenic | 55.0% | |
| TCAGCCGTGGCTGCTGTAGA+AGG | - | chr2_4:9241845-9241864 | Msa0313790:intron | 60.0% | |
| GCACAACAGCCGGTATCCGT+TGG | - | chr2_4:9242142-9242161 | Msa0313790:CDS | 60.0% | |
| TCAGCCGTGGCTGCTGTAGA+AGG | - | chr2_4:9241845-9241864 | Msa0313790:intron | 60.0% | |
| GCACAACAGCCGGTATCCGT+TGG | - | chr2_4:9242142-9242161 | Msa0313790:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 9240574 | 9242540 | 9240574 | ID=Msa0313790;Name=Msa0313790 |
| chr2_4 | mRNA | 9240574 | 9242540 | 9240574 | ID=Msa0313790-mRNA-1;Parent=Msa0313790;Name=Msa0313790-mRNA-1;_AED=0.21;_eAED=0.21;_QI=59|1|1|1|1|1|2|126|337 |
| chr2_4 | exon | 9240574 | 9241286 | 9240574 | ID=Msa0313790-mRNA-1:exon:3573;Parent=Msa0313790-mRNA-1 |
| chr2_4 | exon | 9242055 | 9242540 | 9242055 | ID=Msa0313790-mRNA-1:exon:3572;Parent=Msa0313790-mRNA-1 |
| chr2_4 | five_prime_UTR | 9242482 | 9242540 | 9242482 | ID=Msa0313790-mRNA-1:five_prime_utr;Parent=Msa0313790-mRNA-1 |
| chr2_4 | CDS | 9242055 | 9242481 | 9242055 | ID=Msa0313790-mRNA-1:cds;Parent=Msa0313790-mRNA-1 |
| chr2_4 | CDS | 9240700 | 9241286 | 9240700 | ID=Msa0313790-mRNA-1:cds;Parent=Msa0313790-mRNA-1 |
| chr2_4 | three_prime_UTR | 9240574 | 9240699 | 9240574 | ID=Msa0313790-mRNA-1:three_prime_utr;Parent=Msa0313790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
