Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0273560 | PNX95886.1 | 83.976 | 337 | 52 | 2 | 1 | 337 | 1 | 335 | 0.0 | 569 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0273560 | sp|Q9FJ47|SAG12_ARATH | 48.182 | 330 | 162 | 6 | 15 | 337 | 19 | 346 | 2.65e-107 | 320 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0273560 | A0A2K3MYP3 | 83.976 | 337 | 52 | 2 | 1 | 337 | 1 | 335 | 0.0 | 569 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0109990 | Msa0273560 | 0.801739 | 7.812181e-49 | -8.615850e-47 |
| Msa0153440 | Msa0273560 | 0.808759 | 2.644715e-50 | -8.615850e-47 |
| Msa0156170 | Msa0273560 | 0.801318 | 9.526334e-49 | -8.615850e-47 |
| Msa0193010 | Msa0273560 | 0.804267 | 2.344827e-49 | -8.615850e-47 |
| Msa0193760 | Msa0273560 | 0.802466 | 5.537260e-49 | -8.615850e-47 |
| Msa0211670 | Msa0273560 | 0.819540 | 1.100723e-52 | -8.615850e-47 |
| Msa0232860 | Msa0273560 | 0.811017 | 8.639300e-51 | -8.615850e-47 |
| Msa0235190 | Msa0273560 | 0.828193 | 1.029758e-54 | -8.615850e-47 |
| Msa0254190 | Msa0273560 | 0.825150 | 5.482812e-54 | -8.615850e-47 |
| Msa0273560 | Msa0273570 | 0.865485 | 5.706575e-65 | -8.615850e-47 |
| Msa0273560 | Msa0273580 | 0.829135 | 6.098727e-55 | -8.615850e-47 |
| Msa0273560 | Msa0313780 | 0.807148 | 5.823667e-50 | -8.615850e-47 |
| Msa0273560 | Msa0313790 | 0.841638 | 4.209908e-58 | -8.615850e-47 |
| Msa0273560 | Msa0323550 | 0.803096 | 4.102327e-49 | -8.615850e-47 |
| Msa0273560 | Msa0363980 | 0.803064 | 4.166061e-49 | -8.615850e-47 |
| Msa0273560 | Msa0389050 | 0.800624 | 1.320521e-48 | -8.615850e-47 |
| Msa0273560 | Msa0389310 | 0.806314 | 8.738012e-50 | -8.615850e-47 |
| Msa0273560 | Msa0409820 | 0.805993 | 1.020922e-49 | -8.615850e-47 |
| Msa0273560 | Msa0458700 | 0.806613 | 7.553727e-50 | -8.615850e-47 |
| Msa0273560 | Msa0580610 | 0.821274 | 4.406287e-53 | -8.615850e-47 |
| Msa0273560 | Msa0629880 | 0.828402 | 9.169609e-55 | -8.615850e-47 |
| Msa0273560 | Msa0629890 | 0.819886 | 9.176050e-53 | -8.615850e-47 |
| Msa0273560 | Msa0722930 | 0.802049 | 6.747150e-49 | -8.615850e-47 |
| Msa0273560 | Msa0752580 | 0.840241 | 9.789978e-58 | -8.615850e-47 |
| Msa0273560 | Msa0754180 | 0.839997 | 1.133270e-57 | -8.615850e-47 |
| Msa0273560 | Msa0754500 | 0.831594 | 1.527786e-55 | -8.615850e-47 |
| Msa0273560 | Msa0775580 | 0.800240 | 1.581460e-48 | -8.615850e-47 |
| Msa0273560 | Msa0784580 | 0.821626 | 3.652412e-53 | -8.615850e-47 |
| Msa0273560 | Msa0818010 | 0.806852 | 6.725704e-50 | -8.615850e-47 |
| Msa0273560 | Msa0818030 | 0.817232 | 3.670000e-52 | -8.615850e-47 |
| Msa0273560 | Msa0830900 | 0.831004 | 2.133435e-55 | -8.615850e-47 |
| Msa0273560 | Msa0858360 | 0.800258 | 1.568416e-48 | -8.615850e-47 |
| Msa0273560 | Msa0883370 | 0.801983 | 6.959591e-49 | -8.615850e-47 |
| Msa0273560 | Msa1006250 | 0.804073 | 2.572695e-49 | -8.615850e-47 |
| Msa0273560 | Msa1006680 | 0.809429 | 1.900472e-50 | -8.615850e-47 |
| Msa0273560 | Msa1008340 | 0.807954 | 3.926268e-50 | -8.615850e-47 |
| Msa0273560 | Msa1027240 | 0.809832 | 1.556810e-50 | -8.615850e-47 |
| Msa0273560 | Msa1048610 | 0.804848 | 1.774185e-49 | -8.615850e-47 |
| Msa0273560 | Msa1049950 | 0.815977 | 7.011501e-52 | -8.615850e-47 |
| Msa0273560 | Msa1050490 | 0.801378 | 9.261568e-49 | -8.615850e-47 |
| Msa0273560 | Msa1139240 | 0.822970 | 1.780819e-53 | -8.615850e-47 |
| Msa0273560 | Msa1195750 | 0.806409 | 8.342489e-50 | -8.615850e-47 |
| Msa0273560 | Msa1258280 | 0.800350 | 1.501692e-48 | -8.615850e-47 |
| Msa0273560 | Msa1272960 | 0.815289 | 9.978885e-52 | -8.615850e-47 |
| Msa0273560 | Msa1279850 | 0.803426 | 3.506348e-49 | -8.615850e-47 |
| Msa0273560 | Msa1279860 | 0.816941 | 4.265987e-52 | -8.615850e-47 |
| Msa0273560 | Msa1384320 | 0.807729 | 4.385161e-50 | -8.615850e-47 |
| Msa0273560 | Msa1405400 | 0.811946 | 5.427006e-51 | -8.615850e-47 |
| Msa0273560 | Msa1406600 | 0.801479 | 8.829487e-49 | -8.615850e-47 |
| Msa0273560 | Msa1444370 | 0.813600 | 2.358353e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0273560 | MtrunA17_Chr2g0283671 | 85.217 | 230 | 32 | 2 | 108 | 337 | 1 | 228 | 2.03e-135 | 384 |
| Msa0273560 | MtrunA17_Chr4g0060251 | 53.372 | 341 | 151 | 6 | 1 | 336 | 7 | 344 | 3.02e-124 | 360 |
| Msa0273560 | MtrunA17_Chr5g0405751 | 54.006 | 337 | 146 | 6 | 4 | 336 | 12 | 343 | 4.61e-124 | 360 |
| Msa0273560 | MtrunA17_Chr4g0041061 | 55.521 | 326 | 136 | 7 | 16 | 336 | 23 | 344 | 1.25e-123 | 358 |
| Msa0273560 | MtrunA17_Chr4g0041081 | 54.908 | 326 | 138 | 7 | 16 | 336 | 23 | 344 | 2.20e-123 | 358 |
| Msa0273560 | MtrunA17_Chr4g0040881 | 55.521 | 326 | 136 | 7 | 16 | 336 | 23 | 344 | 5.87e-123 | 357 |
| Msa0273560 | MtrunA17_Chr4g0024411 | 53.846 | 325 | 142 | 6 | 16 | 336 | 22 | 342 | 2.93e-118 | 345 |
| Msa0273560 | MtrunA17_Chr2g0315491 | 51.462 | 342 | 149 | 6 | 1 | 336 | 10 | 340 | 3.27e-115 | 337 |
| Msa0273560 | MtrunA17_Chr4g0041471 | 45.536 | 336 | 178 | 5 | 3 | 335 | 7 | 340 | 9.56e-108 | 318 |
| Msa0273560 | MtrunA17_Chr4g0041521 | 49.689 | 322 | 151 | 7 | 19 | 336 | 25 | 339 | 4.41e-104 | 308 |
| Msa0273560 | MtrunA17_Chr4g0041481 | 49.068 | 322 | 153 | 7 | 19 | 336 | 25 | 339 | 9.24e-104 | 308 |
| Msa0273560 | MtrunA17_Chr7g0248391 | 47.436 | 312 | 152 | 3 | 28 | 337 | 37 | 338 | 4.77e-100 | 298 |
| Msa0273560 | MtrunA17_Chr2g0311471 | 48.563 | 348 | 160 | 10 | 1 | 334 | 1 | 343 | 1.12e-99 | 298 |
| Msa0273560 | MtrunA17_Chr2g0283661 | 83.544 | 158 | 26 | 0 | 1 | 158 | 1 | 158 | 2.39e-97 | 289 |
| Msa0273560 | MtrunA17_Chr2g0283661 | 68.103 | 116 | 37 | 0 | 222 | 337 | 157 | 272 | 1.40e-50 | 169 |
| Msa0273560 | MtrunA17_Chr1g0208261 | 48.896 | 317 | 152 | 7 | 25 | 335 | 82 | 394 | 5.55e-97 | 296 |
| Msa0273560 | MtrunA17_Chr2g0311381 | 46.240 | 359 | 163 | 13 | 1 | 337 | 1 | 351 | 6.25e-97 | 291 |
| Msa0273560 | MtrunA17_Chr4g0040851 | 44.477 | 344 | 172 | 8 | 3 | 337 | 27 | 360 | 5.81e-96 | 288 |
| Msa0273560 | MtrunA17_Chr7g0248811 | 44.611 | 334 | 169 | 6 | 9 | 337 | 14 | 336 | 6.67e-95 | 285 |
| Msa0273560 | MtrunA17_Chr3g0144281 | 45.397 | 315 | 163 | 7 | 25 | 336 | 39 | 347 | 3.05e-93 | 281 |
| Msa0273560 | MtrunA17_Chr3g0116551 | 42.059 | 340 | 189 | 7 | 1 | 335 | 7 | 343 | 3.20e-92 | 279 |
| Msa0273560 | MtrunA17_Chr3g0134231 | 44.012 | 334 | 176 | 8 | 10 | 335 | 30 | 360 | 3.83e-92 | 283 |
| Msa0273560 | MtrunA17_Chr2g0319991 | 43.711 | 318 | 170 | 5 | 27 | 337 | 29 | 344 | 6.21e-92 | 278 |
| Msa0273560 | MtrunA17_Chr2g0325121 | 42.733 | 344 | 179 | 8 | 1 | 335 | 1 | 335 | 1.73e-90 | 274 |
| Msa0273560 | MtrunA17_Chr4g0053311 | 41.420 | 338 | 189 | 7 | 4 | 335 | 6 | 340 | 8.11e-90 | 273 |
| Msa0273560 | MtrunA17_Chr3g0142071 | 46.580 | 307 | 158 | 5 | 34 | 336 | 51 | 355 | 8.22e-90 | 276 |
| Msa0273560 | MtrunA17_Chr4g0058081 | 43.323 | 337 | 180 | 9 | 5 | 335 | 11 | 342 | 1.06e-88 | 270 |
| Msa0273560 | MtrunA17_Chr2g0311391 | 42.632 | 380 | 165 | 15 | 1 | 336 | 1 | 371 | 2.00e-87 | 267 |
| Msa0273560 | MtrunA17_Chr1g0153011 | 42.424 | 330 | 167 | 8 | 10 | 335 | 31 | 341 | 5.54e-82 | 256 |
| Msa0273560 | MtrunA17_Chr2g0283901 | 43.344 | 323 | 172 | 8 | 20 | 336 | 38 | 355 | 2.10e-78 | 248 |
| Msa0273560 | MtrunA17_Chr1g0156161 | 48.333 | 240 | 116 | 5 | 99 | 334 | 26 | 261 | 9.41e-73 | 226 |
| Msa0273560 | MtrunA17_Chr2g0283741 | 38.344 | 326 | 187 | 8 | 18 | 335 | 38 | 357 | 6.11e-71 | 225 |
| Msa0273560 | MtrunA17_Chr8g0379151 | 39.093 | 353 | 191 | 12 | 1 | 336 | 27 | 372 | 4.29e-69 | 220 |
| Msa0273560 | MtrunA17_Chr0c27g0493921 | 40.798 | 326 | 171 | 13 | 20 | 337 | 38 | 349 | 1.74e-66 | 213 |
| Msa0273560 | MtrunA17_Chr4g0035551 | 35.556 | 360 | 191 | 12 | 3 | 333 | 6 | 353 | 3.17e-64 | 207 |
| Msa0273560 | MtrunA17_Chr4g0070441 | 41.118 | 304 | 161 | 11 | 20 | 315 | 38 | 331 | 8.14e-63 | 203 |
| Msa0273560 | MtrunA17_Chr1g0155781 | 37.576 | 330 | 173 | 12 | 25 | 333 | 40 | 357 | 1.25e-60 | 198 |
| Msa0273560 | MtrunA17_Chr2g0311091 | 51.087 | 184 | 77 | 2 | 1 | 171 | 1 | 184 | 1.98e-58 | 186 |
| Msa0273560 | MtrunA17_Chr1g0199131 | 37.855 | 317 | 166 | 13 | 36 | 333 | 59 | 363 | 4.01e-57 | 189 |
| Msa0273560 | MtrunA17_Chr4g0036731 | 33.333 | 321 | 173 | 11 | 18 | 333 | 33 | 317 | 5.72e-44 | 154 |
| Msa0273560 | MtrunA17_Chr7g0248421 | 48.052 | 154 | 74 | 2 | 145 | 296 | 57 | 206 | 1.57e-42 | 146 |
| Msa0273560 | MtrunA17_Chr4g0036281 | 31.481 | 324 | 179 | 10 | 18 | 333 | 33 | 321 | 4.00e-42 | 149 |
| Msa0273560 | MtrunA17_Chr4g0037291 | 31.481 | 324 | 179 | 10 | 18 | 333 | 74 | 362 | 9.97e-42 | 149 |
| Msa0273560 | MtrunA17_Chr2g0283751 | 34.630 | 257 | 150 | 8 | 18 | 265 | 38 | 285 | 4.11e-41 | 145 |
| Msa0273560 | MtrunA17_Chr7g0248371 | 54.639 | 97 | 44 | 0 | 239 | 335 | 34 | 130 | 2.38e-32 | 118 |
| Msa0273560 | MtrunA17_Chr1g0156771 | 46.154 | 117 | 59 | 3 | 99 | 211 | 32 | 148 | 1.85e-28 | 108 |
| Msa0273560 | MtrunA17_Chr7g0271041 | 30.164 | 305 | 177 | 13 | 50 | 328 | 36 | 330 | 8.76e-28 | 111 |
| Msa0273560 | MtrunA17_Chr7g0271031 | 29.268 | 328 | 193 | 15 | 38 | 336 | 67 | 384 | 1.38e-27 | 111 |
| Msa0273560 | MtrunA17_Chr1g0167291 | 52.041 | 98 | 43 | 2 | 1 | 94 | 1 | 98 | 6.91e-27 | 102 |
| Msa0273560 | MtrunA17_Chr7g0248661 | 56.757 | 74 | 32 | 0 | 262 | 335 | 2 | 75 | 5.07e-24 | 93.6 |
| Msa0273560 | MtrunA17_Chr1g0147901 | 50.538 | 93 | 39 | 4 | 4 | 90 | 3 | 94 | 1.28e-19 | 84.0 |
| Msa0273560 | MtrunA17_Chr4g0011011 | 52.778 | 72 | 30 | 2 | 4 | 71 | 3 | 74 | 7.23e-18 | 77.4 |
| Msa0273560 | MtrunA17_Chr8g0379671 | 37.692 | 130 | 69 | 6 | 162 | 288 | 23 | 143 | 1.91e-17 | 79.0 |
| Msa0273560 | MtrunA17_Chr1g0156701 | 38.318 | 107 | 51 | 3 | 1 | 93 | 1 | 106 | 2.13e-17 | 77.4 |
| Msa0273560 | MtrunA17_Chr1g0156691 | 37.755 | 98 | 46 | 3 | 1 | 84 | 1 | 97 | 3.61e-16 | 73.2 |
| Msa0273560 | MtrunA17_Chr3g0120601 | 27.404 | 208 | 127 | 8 | 125 | 314 | 4 | 205 | 2.42e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0273560 | AT2G34080.1 | 52.187 | 343 | 151 | 7 | 3 | 335 | 4 | 343 | 2.87e-123 | 358 |
| Msa0273560 | AT2G27420.1 | 50.292 | 342 | 160 | 6 | 4 | 335 | 5 | 346 | 1.42e-113 | 333 |
| Msa0273560 | AT3G49340.1 | 49.853 | 339 | 158 | 6 | 3 | 335 | 7 | 339 | 5.96e-113 | 332 |
| Msa0273560 | AT1G29090.1 | 51.562 | 320 | 145 | 7 | 23 | 335 | 37 | 353 | 1.17e-110 | 326 |
| Msa0273560 | AT1G29080.1 | 49.003 | 351 | 156 | 8 | 1 | 335 | 1 | 344 | 1.04e-109 | 323 |
| Msa0273560 | AT5G45890.1 | 48.182 | 330 | 162 | 6 | 15 | 337 | 19 | 346 | 2.69e-108 | 320 |
| Msa0273560 | AT3G19390.1 | 43.440 | 343 | 175 | 5 | 3 | 336 | 13 | 345 | 6.63e-97 | 295 |
| Msa0273560 | AT4G35350.1 | 45.058 | 344 | 175 | 8 | 3 | 336 | 13 | 352 | 1.15e-96 | 290 |
| Msa0273560 | AT4G23520.1 | 44.886 | 352 | 173 | 8 | 1 | 335 | 1 | 348 | 7.14e-96 | 288 |
| Msa0273560 | AT1G20850.1 | 46.667 | 315 | 161 | 7 | 25 | 336 | 43 | 353 | 1.60e-95 | 288 |
| Msa0273560 | AT1G29110.1 | 47.988 | 323 | 144 | 10 | 23 | 337 | 28 | 334 | 2.04e-95 | 286 |
| Msa0273560 | AT3G48340.1 | 45.882 | 340 | 172 | 10 | 3 | 335 | 8 | 342 | 4.65e-95 | 286 |
| Msa0273560 | AT5G43060.1 | 46.372 | 317 | 158 | 7 | 25 | 335 | 42 | 352 | 4.14e-93 | 285 |
| Msa0273560 | AT5G50260.1 | 44.282 | 341 | 178 | 8 | 3 | 335 | 5 | 341 | 1.15e-92 | 281 |
| Msa0273560 | AT1G47128.1 | 43.175 | 315 | 170 | 7 | 25 | 335 | 42 | 351 | 7.79e-90 | 276 |
| Msa0273560 | AT1G09850.1 | 46.452 | 310 | 158 | 6 | 29 | 335 | 28 | 332 | 2.75e-89 | 275 |
| Msa0273560 | AT3G19400.1 | 42.722 | 316 | 174 | 5 | 25 | 336 | 36 | 348 | 9.68e-88 | 268 |
| Msa0273560 | AT4G11310.1 | 39.944 | 358 | 176 | 7 | 3 | 335 | 8 | 351 | 1.41e-87 | 268 |
| Msa0273560 | AT4G36880.1 | 42.857 | 329 | 175 | 8 | 18 | 335 | 34 | 360 | 2.14e-87 | 268 |
| Msa0273560 | AT3G48350.1 | 42.012 | 338 | 189 | 6 | 4 | 336 | 8 | 343 | 4.07e-87 | 266 |
| Msa0273560 | AT4G11320.2 | 42.038 | 314 | 158 | 5 | 34 | 335 | 57 | 358 | 8.71e-85 | 261 |
| Msa0273560 | AT4G11320.1 | 42.038 | 314 | 158 | 5 | 34 | 335 | 57 | 358 | 8.71e-85 | 261 |
| Msa0273560 | AT1G06260.1 | 43.976 | 332 | 168 | 9 | 15 | 335 | 17 | 341 | 1.15e-83 | 257 |
| Msa0273560 | AT3G43960.1 | 43.533 | 317 | 169 | 7 | 25 | 335 | 33 | 345 | 7.16e-81 | 251 |
| Msa0273560 | AT5G60360.1 | 42.769 | 325 | 166 | 12 | 20 | 337 | 46 | 357 | 1.16e-69 | 221 |
| Msa0273560 | AT5G60360.2 | 42.462 | 325 | 166 | 13 | 20 | 337 | 46 | 356 | 5.06e-67 | 214 |
| Msa0273560 | AT4G35350.2 | 42.599 | 277 | 146 | 7 | 1 | 267 | 11 | 284 | 4.99e-66 | 210 |
| Msa0273560 | AT5G60360.3 | 42.574 | 303 | 158 | 10 | 20 | 315 | 46 | 339 | 2.82e-65 | 210 |
| Msa0273560 | AT4G39090.1 | 38.141 | 312 | 165 | 9 | 39 | 333 | 57 | 357 | 9.26e-65 | 209 |
| Msa0273560 | AT3G45310.1 | 40.308 | 325 | 170 | 12 | 22 | 337 | 48 | 357 | 1.67e-62 | 203 |
| Msa0273560 | AT2G21430.1 | 38.141 | 312 | 165 | 10 | 39 | 333 | 54 | 354 | 2.97e-61 | 200 |
| Msa0273560 | AT3G45310.2 | 40.000 | 325 | 170 | 13 | 22 | 337 | 48 | 356 | 4.97e-60 | 197 |
| Msa0273560 | AT3G19400.2 | 41.102 | 236 | 134 | 3 | 25 | 257 | 36 | 269 | 1.42e-59 | 193 |
| Msa0273560 | AT4G16190.1 | 38.636 | 308 | 161 | 10 | 39 | 328 | 61 | 358 | 7.15e-58 | 191 |
| Msa0273560 | AT3G54940.2 | 38.053 | 339 | 168 | 16 | 18 | 333 | 40 | 359 | 9.73e-57 | 188 |
| Msa0273560 | AT3G48350.2 | 38.235 | 272 | 161 | 6 | 4 | 270 | 8 | 277 | 3.38e-55 | 182 |
| Msa0273560 | AT3G54940.3 | 37.826 | 230 | 124 | 8 | 36 | 253 | 54 | 276 | 5.41e-41 | 145 |
| Msa0273560 | AT1G02305.1 | 30.405 | 296 | 166 | 11 | 62 | 328 | 49 | 333 | 7.98e-30 | 117 |
| Msa0273560 | AT4G01610.1 | 30.892 | 314 | 172 | 14 | 47 | 328 | 30 | 330 | 1.06e-29 | 117 |
| Msa0273560 | AT4G01610.2 | 30.255 | 314 | 174 | 14 | 47 | 328 | 30 | 330 | 1.03e-27 | 111 |
| Msa0273560 | AT1G02300.1 | 32.381 | 210 | 116 | 8 | 140 | 328 | 146 | 350 | 2.13e-22 | 97.1 |
| Msa0273560 | AT2G22160.1 | 40.625 | 96 | 46 | 4 | 49 | 140 | 10 | 98 | 3.59e-13 | 65.5 |
Find 71 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTCATTTGATCATTTAAT+TGG | 0.228760 | 2_3:-5146743 | None:intergenic |
| TTGTTGGAATATCATCATTC+AGG | 0.284103 | 2_3:-5145672 | None:intergenic |
| AAGCGAAGAGCTTCATTAAA+AGG | 0.287022 | 2_3:-5147182 | None:intergenic |
| CAACAATGGATGATAAAATA+TGG | 0.298916 | 2_3:+5145424 | Msa0273560:CDS |
| TACATGGGAGGGGTTTATTC+AGG | 0.303096 | 2_3:+5146885 | Msa0273560:CDS |
| ATTGGTTGATTAAGAATTCT+TGG | 0.312011 | 2_3:+5146979 | Msa0273560:CDS |
| TTAAATCAGAGTATGGATTT+AGG | 0.312768 | 2_3:-5145558 | None:intergenic |
| TCACTAGTTAAATCAGAGTA+TGG | 0.325666 | 2_3:-5145565 | None:intergenic |
| GAGTTTATTGCTTCACATAC+TGG | 0.326687 | 2_3:+5145589 | Msa0273560:CDS |
| GAATTCTTGGGGTAAAGGTT+GGG | 0.335985 | 2_3:+5146992 | Msa0273560:CDS |
| GACAGTGTTCTTGACATGAT+TGG | 0.347406 | 2_3:-5145376 | None:intergenic |
| GCAGCAACGGCATGGTTAAA+TGG | 0.348206 | 2_3:-5146921 | None:intergenic |
| AGAATTCTTGGGGTAAAGGT+TGG | 0.362686 | 2_3:+5146991 | Msa0273560:CDS |
| TTGGTTGATTAAGAATTCTT+GGG | 0.374775 | 2_3:+5146980 | Msa0273560:CDS |
| GGGGTGTGGTGGAGGTTATA+TGG | 0.378728 | 2_3:+5146635 | Msa0273560:CDS |
| ATTAAGAATTCTTGGGGTAA+AGG | 0.390430 | 2_3:+5146987 | Msa0273560:CDS |
| TGCTTCACTAACAATACCTT+GGG | 0.396154 | 2_3:-5146685 | None:intergenic |
| CTCATTATCTGAGCAACAAT+TGG | 0.401955 | 2_3:+5146590 | Msa0273560:CDS |
| TGTTTGCATGATTATCTTGT+GGG | 0.419752 | 2_3:+5145342 | Msa0273560:CDS |
| TCAGCCGTGGCTGCTGTAGA+AGG | 0.422625 | 2_3:+5146537 | Msa0273560:CDS |
| TGTCTCCAATCAAAATTTGT+TGG | 0.429280 | 2_3:-5145688 | None:intergenic |
| TAGTAGTTGTTGTTCATCAT+TGG | 0.437687 | 2_3:-5146802 | None:intergenic |
| AATTCTTGGGGTAAAGGTTG+GGG | 0.440306 | 2_3:+5146993 | Msa0273560:CDS |
| ACAGTGTTCTTGACATGATT+GGG | 0.450300 | 2_3:-5145375 | None:intergenic |
| GGTAAAGGTTGGGGTGAAGA+AGG | 0.468643 | 2_3:+5147002 | Msa0273560:CDS |
| AATATCATCATTCAGGTTGA+AGG | 0.470988 | 2_3:-5145665 | None:intergenic |
| ACATCAATGCCAACGGATAC+CGG | 0.473186 | 2_3:-5146843 | None:intergenic |
| TACTGCAACTGACCTCATCT+TGG | 0.480728 | 2_3:-5145641 | None:intergenic |
| AGTTGTTGTTCATCATTGGC+AGG | 0.483362 | 2_3:-5146798 | None:intergenic |
| AATGTGTTGTAGGATGTTGC+TGG | 0.485970 | 2_3:+5146508 | Msa0273560:intron |
| GCCGTTGCTGCAGTTGGTTA+CGG | 0.486751 | 2_3:+5146933 | Msa0273560:CDS |
| AACCATGCCGTTGCTGCAGT+TGG | 0.486936 | 2_3:+5146927 | Msa0273560:CDS |
| CTGCTTCACTAACAATACCT+TGG | 0.494538 | 2_3:-5146686 | None:intergenic |
| AGGCTACATGAAAGTGTTGA+GGG | 0.498958 | 2_3:+5147022 | Msa0273560:CDS |
| TATAGTTACCACAACTGCCT+TGG | 0.504428 | 2_3:-5145738 | None:intergenic |
| TGGTTAAATGGTTGTCCACA+TGG | 0.507427 | 2_3:-5146909 | None:intergenic |
| CTGTTTGCATGATTATCTTG+TGG | 0.513337 | 2_3:+5145341 | Msa0273560:CDS |
| ATAGAGAATTTCAACAATGC+TGG | 0.520071 | 2_3:+5145514 | Msa0273560:CDS |
| GTCTGACTAACTCCTTGGTA+TGG | 0.521450 | 2_3:-5146714 | None:intergenic |
| GGTTTGTATTATATATCTGA+AGG | 0.526943 | 2_3:-5146664 | None:intergenic |
| GGTTACGGTGTAAGTGAAGA+TGG | 0.532156 | 2_3:+5146948 | Msa0273560:CDS |
| GTGAAGATGGAACTAAGTAT+TGG | 0.533019 | 2_3:+5146961 | Msa0273560:CDS |
| CAACAATTGGTTGACTGTGA+TGG | 0.536654 | 2_3:+5146603 | Msa0273560:CDS |
| ACCGTAACCAACTGCAGCAA+CGG | 0.545610 | 2_3:-5146934 | None:intergenic |
| ATGTCGTCTGACTAACTCCT+TGG | 0.546971 | 2_3:-5146719 | None:intergenic |
| TGCAACTGACCTCATCTTGG+AGG | 0.547643 | 2_3:-5145638 | None:intergenic |
| ATGTGTTGTAGGATGTTGCT+GGG | 0.555048 | 2_3:+5146509 | Msa0273560:intron |
| GTTAAAGACCAAGGCAGTTG+TGG | 0.558254 | 2_3:+5145730 | Msa0273560:CDS |
| ACTGCCTTGGTCTTTAACAT+CGG | 0.570004 | 2_3:-5145725 | None:intergenic |
| TCATCTTGGAGGATGAAAGT+TGG | 0.571474 | 2_3:-5145627 | None:intergenic |
| GGTGTTGTGAAAATCAAGAC+TGG | 0.581120 | 2_3:+5146558 | Msa0273560:CDS |
| ATATCATCATTCAGGTTGAA+GGG | 0.586071 | 2_3:-5145664 | None:intergenic |
| TGGTTGATTAAGAATTCTTG+GGG | 0.586376 | 2_3:+5146981 | Msa0273560:CDS |
| AACCAACTGCAGCAACGGCA+TGG | 0.593202 | 2_3:-5146929 | None:intergenic |
| ATGAAAGTGTTGAGGGAAAG+TGG | 0.597344 | 2_3:+5147029 | Msa0273560:CDS |
| ACAAGCAGTAGCACAACAGC+CGG | 0.607451 | 2_3:+5146824 | Msa0273560:CDS |
| AACACCTTCTACAGCAGCCA+CGG | 0.614533 | 2_3:-5146541 | None:intergenic |
| AAGGCTACATGAAAGTGTTG+AGG | 0.614540 | 2_3:+5147021 | Msa0273560:CDS |
| AACTTTCATCCTCCAAGATG+AGG | 0.620589 | 2_3:+5145629 | Msa0273560:CDS |
| GGTAACAAGAGTTACAAGCT+TGG | 0.620609 | 2_3:+5145535 | Msa0273560:CDS |
| GCACAACAGCCGGTATCCGT+TGG | 0.621605 | 2_3:+5146834 | Msa0273560:CDS |
| TTGTTGAAGCACATCAACAA+TGG | 0.624010 | 2_3:+5145410 | Msa0273560:CDS |
| GTATCCGTTGGCATTGATGT+CGG | 0.626778 | 2_3:+5146846 | Msa0273560:CDS |
| GGGGTTTATTCAGGACCATG+TGG | 0.637962 | 2_3:+5146894 | Msa0273560:CDS |
| GGTGAACCTCGAGGTCATTG+TGG | 0.640065 | 2_3:+5147050 | Msa0273560:CDS |
| ATCACCGACATCAATGCCAA+CGG | 0.654937 | 2_3:-5146850 | None:intergenic |
| GAAGCAGATTATCCATACCA+AGG | 0.673721 | 2_3:+5146702 | Msa0273560:CDS |
| GTTACCGATGTTAAAGACCA+AGG | 0.675798 | 2_3:+5145721 | Msa0273560:CDS |
| AGATATATAATACAAACCCA+AGG | 0.685448 | 2_3:+5146669 | Msa0273560:CDS |
| AGGGAAAGTGGTGAACCTCG+AGG | 0.717507 | 2_3:+5147041 | Msa0273560:CDS |
| GCAATGCCACAATGACCTCG+AGG | 0.728441 | 2_3:-5147056 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGTGATATAAAATAAAA+TGG | - | chr2_3:5145952-5145971 | None:intergenic | 10.0% |
| !!! | TTAGAAAAATATATGAATTT+TGG | - | chr2_3:5146150-5146169 | None:intergenic | 10.0% |
| !!! | AAAGTTACATTTTTATATTA+AGG | + | chr2_3:5146353-5146372 | Msa0273560:intron | 10.0% |
| !! | ATTCGTATAAAAATATTATA+TGG | - | chr2_3:5147102-5147121 | None:intergenic | 10.0% |
| !!! | TTTTGTGATATAAAATAAAA+TGG | - | chr2_3:5145952-5145971 | None:intergenic | 10.0% |
| !!! | TTAGAAAAATATATGAATTT+TGG | - | chr2_3:5146150-5146169 | None:intergenic | 10.0% |
| !!! | AAAGTTACATTTTTATATTA+AGG | + | chr2_3:5146353-5146372 | Msa0273560:intron | 10.0% |
| !! | ATTCGTATAAAAATATTATA+TGG | - | chr2_3:5147102-5147121 | None:intergenic | 10.0% |
| !!! | AATAAGAAACTTCATTTTTT+GGG | - | chr2_3:5145320-5145339 | None:intergenic | 15.0% |
| !!! | TATTTTTTAATTAGTCATCT+TGG | + | chr2_3:5145785-5145804 | Msa0273560:intron | 15.0% |
| !! | TGATATAAAATAAAATGGAA+TGG | - | chr2_3:5145947-5145966 | None:intergenic | 15.0% |
| !! | GTATAAAAATATTATATGGT+GGG | - | chr2_3:5147098-5147117 | None:intergenic | 15.0% |
| !!! | AATAAGAAACTTCATTTTTT+GGG | - | chr2_3:5145320-5145339 | None:intergenic | 15.0% |
| !!! | TATTTTTTAATTAGTCATCT+TGG | + | chr2_3:5145785-5145804 | Msa0273560:intron | 15.0% |
| !! | TGATATAAAATAAAATGGAA+TGG | - | chr2_3:5145947-5145966 | None:intergenic | 15.0% |
| !! | GTATAAAAATATTATATGGT+GGG | - | chr2_3:5147098-5147117 | None:intergenic | 15.0% |
| !!! | AAGATAATGTTTTGTGAAAA+AGG | - | chr2_3:5145273-5145292 | None:intergenic | 20.0% |
| !!! | ATAAGAAACTTCATTTTTTG+GGG | - | chr2_3:5145319-5145338 | None:intergenic | 20.0% |
| !!! | CAATAAGAAACTTCATTTTT+TGG | - | chr2_3:5145321-5145340 | None:intergenic | 20.0% |
| !!! | ATATTCCAACAAATTTTGAT+TGG | + | chr2_3:5145683-5145702 | Msa0273560:CDS | 20.0% |
| !! | TAAAATAAAATGGAATGGAA+TGG | - | chr2_3:5145942-5145961 | None:intergenic | 20.0% |
| !! | GAATATCGAAAAGATATTTA+AGG | + | chr2_3:5146242-5146261 | Msa0273560:intron | 20.0% |
| !!! | ATGTCATTTGATCATTTAAT+TGG | - | chr2_3:5146746-5146765 | None:intergenic | 20.0% |
| !! | CGTATAAAAATATTATATGG+TGG | - | chr2_3:5147099-5147118 | None:intergenic | 20.0% |
| !!! | AAGATAATGTTTTGTGAAAA+AGG | - | chr2_3:5145273-5145292 | None:intergenic | 20.0% |
| !!! | ATAAGAAACTTCATTTTTTG+GGG | - | chr2_3:5145319-5145338 | None:intergenic | 20.0% |
| !!! | CAATAAGAAACTTCATTTTT+TGG | - | chr2_3:5145321-5145340 | None:intergenic | 20.0% |
| !!! | ATATTCCAACAAATTTTGAT+TGG | + | chr2_3:5145683-5145702 | Msa0273560:CDS | 20.0% |
| !! | TAAAATAAAATGGAATGGAA+TGG | - | chr2_3:5145942-5145961 | None:intergenic | 20.0% |
| !! | GAATATCGAAAAGATATTTA+AGG | + | chr2_3:5146242-5146261 | Msa0273560:intron | 20.0% |
| !!! | ATGTCATTTGATCATTTAAT+TGG | - | chr2_3:5146746-5146765 | None:intergenic | 20.0% |
| !! | CGTATAAAAATATTATATGG+TGG | - | chr2_3:5147099-5147118 | None:intergenic | 20.0% |
| !!! | TAAGAAACTTCATTTTTTGG+GGG | - | chr2_3:5145318-5145337 | None:intergenic | 25.0% |
| ! | CAACAATGGATGATAAAATA+TGG | + | chr2_3:5145424-5145443 | Msa0273560:CDS | 25.0% |
| ! | TTAAATCAGAGTATGGATTT+AGG | - | chr2_3:5145561-5145580 | None:intergenic | 25.0% |
| ! | TATGCTTCATTAAAAGTTCT+CGG | - | chr2_3:5145987-5146006 | None:intergenic | 25.0% |
| ! | GCATTATTGATGTGTTTATA+TGG | - | chr2_3:5146026-5146045 | None:intergenic | 25.0% |
| !! | AATATCTTTTCGATATTCGA+TGG | - | chr2_3:5146240-5146259 | None:intergenic | 25.0% |
| ! | GATATTATTCAATGTGTTGT+AGG | + | chr2_3:5146498-5146517 | Msa0273560:intron | 25.0% |
| ! | GGTTTGTATTATATATCTGA+AGG | - | chr2_3:5146667-5146686 | None:intergenic | 25.0% |
| ! | AGATATATAATACAAACCCA+AGG | + | chr2_3:5146669-5146688 | Msa0273560:CDS | 25.0% |
| !! | TGATGATTTTAGACATTACA+TGG | + | chr2_3:5146869-5146888 | Msa0273560:CDS | 25.0% |
| !! | GATGATTTTAGACATTACAT+GGG | + | chr2_3:5146870-5146889 | Msa0273560:CDS | 25.0% |
| ! | ATTGGTTGATTAAGAATTCT+TGG | + | chr2_3:5146979-5146998 | Msa0273560:CDS | 25.0% |
| ! | TTGGTTGATTAAGAATTCTT+GGG | + | chr2_3:5146980-5146999 | Msa0273560:CDS | 25.0% |
| !!! | TAAGAAACTTCATTTTTTGG+GGG | - | chr2_3:5145318-5145337 | None:intergenic | 25.0% |
| ! | CAACAATGGATGATAAAATA+TGG | + | chr2_3:5145424-5145443 | Msa0273560:CDS | 25.0% |
| ! | TTAAATCAGAGTATGGATTT+AGG | - | chr2_3:5145561-5145580 | None:intergenic | 25.0% |
| ! | TATGCTTCATTAAAAGTTCT+CGG | - | chr2_3:5145987-5146006 | None:intergenic | 25.0% |
| ! | GCATTATTGATGTGTTTATA+TGG | - | chr2_3:5146026-5146045 | None:intergenic | 25.0% |
| !! | AATATCTTTTCGATATTCGA+TGG | - | chr2_3:5146240-5146259 | None:intergenic | 25.0% |
| ! | GATATTATTCAATGTGTTGT+AGG | + | chr2_3:5146498-5146517 | Msa0273560:intron | 25.0% |
| ! | GGTTTGTATTATATATCTGA+AGG | - | chr2_3:5146667-5146686 | None:intergenic | 25.0% |
| ! | AGATATATAATACAAACCCA+AGG | + | chr2_3:5146669-5146688 | Msa0273560:CDS | 25.0% |
| !! | TGATGATTTTAGACATTACA+TGG | + | chr2_3:5146869-5146888 | Msa0273560:CDS | 25.0% |
| !! | GATGATTTTAGACATTACAT+GGG | + | chr2_3:5146870-5146889 | Msa0273560:CDS | 25.0% |
| ! | ATTGGTTGATTAAGAATTCT+TGG | + | chr2_3:5146979-5146998 | Msa0273560:CDS | 25.0% |
| ! | TTGGTTGATTAAGAATTCTT+GGG | + | chr2_3:5146980-5146999 | Msa0273560:CDS | 25.0% |
| !!! | AAGAAACTTCATTTTTTGGG+GGG | - | chr2_3:5145317-5145336 | None:intergenic | 30.0% |
| TGTTTGCATGATTATCTTGT+GGG | + | chr2_3:5145342-5145361 | Msa0273560:CDS | 30.0% | |
| ATAGAGAATTTCAACAATGC+TGG | + | chr2_3:5145514-5145533 | Msa0273560:CDS | 30.0% | |
| TCACTAGTTAAATCAGAGTA+TGG | - | chr2_3:5145568-5145587 | None:intergenic | 30.0% | |
| !! | ATATCATCATTCAGGTTGAA+GGG | - | chr2_3:5145667-5145686 | None:intergenic | 30.0% |
| !! | AATATCATCATTCAGGTTGA+AGG | - | chr2_3:5145668-5145687 | None:intergenic | 30.0% |
| TTGTTGGAATATCATCATTC+AGG | - | chr2_3:5145675-5145694 | None:intergenic | 30.0% | |
| TGTCTCCAATCAAAATTTGT+TGG | - | chr2_3:5145691-5145710 | None:intergenic | 30.0% | |
| !!! | AATTTTGATTGGAGACAACA+AGG | + | chr2_3:5145694-5145713 | Msa0273560:CDS | 30.0% |
| TATTGGAGACTTTGTTAGTT+TGG | - | chr2_3:5145844-5145863 | None:intergenic | 30.0% | |
| AACAAAGTCTCCAATATGTT+TGG | + | chr2_3:5145848-5145867 | Msa0273560:intron | 30.0% | |
| ! | CTCCAATATGTTTGGATTTT+CGG | + | chr2_3:5145856-5145875 | Msa0273560:intron | 30.0% |
| TACCGAAAATCCAAACATAT+TGG | - | chr2_3:5145861-5145880 | None:intergenic | 30.0% | |
| ! | TGTTTGGATTTTCGGTATAA+AGG | + | chr2_3:5145864-5145883 | Msa0273560:intron | 30.0% |
| GATGAATAAAGATAGAAGAC+TGG | - | chr2_3:5146218-5146237 | None:intergenic | 30.0% | |
| TATCTAGCACAAACACTAAT+CGG | - | chr2_3:5146302-5146321 | None:intergenic | 30.0% | |
| !! | TGTAATTTCTAGCCTTAGAT+AGG | - | chr2_3:5146384-5146403 | None:intergenic | 30.0% |
| ! | TAGTAGTTGTTGTTCATCAT+TGG | - | chr2_3:5146805-5146824 | None:intergenic | 30.0% |
| ! | ATTTTAGACATTACATGGGA+GGG | + | chr2_3:5146874-5146893 | Msa0273560:CDS | 30.0% |
| TGGTTGATTAAGAATTCTTG+GGG | + | chr2_3:5146981-5147000 | Msa0273560:CDS | 30.0% | |
| ATTAAGAATTCTTGGGGTAA+AGG | + | chr2_3:5146987-5147006 | Msa0273560:CDS | 30.0% | |
| !!! | AAGAAACTTCATTTTTTGGG+GGG | - | chr2_3:5145317-5145336 | None:intergenic | 30.0% |
| TGTTTGCATGATTATCTTGT+GGG | + | chr2_3:5145342-5145361 | Msa0273560:CDS | 30.0% | |
| ATAGAGAATTTCAACAATGC+TGG | + | chr2_3:5145514-5145533 | Msa0273560:CDS | 30.0% | |
| TCACTAGTTAAATCAGAGTA+TGG | - | chr2_3:5145568-5145587 | None:intergenic | 30.0% | |
| !! | ATATCATCATTCAGGTTGAA+GGG | - | chr2_3:5145667-5145686 | None:intergenic | 30.0% |
| !! | AATATCATCATTCAGGTTGA+AGG | - | chr2_3:5145668-5145687 | None:intergenic | 30.0% |
| TTGTTGGAATATCATCATTC+AGG | - | chr2_3:5145675-5145694 | None:intergenic | 30.0% | |
| TGTCTCCAATCAAAATTTGT+TGG | - | chr2_3:5145691-5145710 | None:intergenic | 30.0% | |
| !!! | AATTTTGATTGGAGACAACA+AGG | + | chr2_3:5145694-5145713 | Msa0273560:CDS | 30.0% |
| TATTGGAGACTTTGTTAGTT+TGG | - | chr2_3:5145844-5145863 | None:intergenic | 30.0% | |
| AACAAAGTCTCCAATATGTT+TGG | + | chr2_3:5145848-5145867 | Msa0273560:intron | 30.0% | |
| ! | CTCCAATATGTTTGGATTTT+CGG | + | chr2_3:5145856-5145875 | Msa0273560:intron | 30.0% |
| TACCGAAAATCCAAACATAT+TGG | - | chr2_3:5145861-5145880 | None:intergenic | 30.0% | |
| ! | TGTTTGGATTTTCGGTATAA+AGG | + | chr2_3:5145864-5145883 | Msa0273560:intron | 30.0% |
| GATGAATAAAGATAGAAGAC+TGG | - | chr2_3:5146218-5146237 | None:intergenic | 30.0% | |
| TATCTAGCACAAACACTAAT+CGG | - | chr2_3:5146302-5146321 | None:intergenic | 30.0% | |
| !! | TGTAATTTCTAGCCTTAGAT+AGG | - | chr2_3:5146384-5146403 | None:intergenic | 30.0% |
| ! | TAGTAGTTGTTGTTCATCAT+TGG | - | chr2_3:5146805-5146824 | None:intergenic | 30.0% |
| ! | ATTTTAGACATTACATGGGA+GGG | + | chr2_3:5146874-5146893 | Msa0273560:CDS | 30.0% |
| TGGTTGATTAAGAATTCTTG+GGG | + | chr2_3:5146981-5147000 | Msa0273560:CDS | 30.0% | |
| ATTAAGAATTCTTGGGGTAA+AGG | + | chr2_3:5146987-5147006 | Msa0273560:CDS | 30.0% | |
| CTGTTTGCATGATTATCTTG+TGG | + | chr2_3:5145341-5145360 | Msa0273560:CDS | 35.0% | |
| ACAGTGTTCTTGACATGATT+GGG | - | chr2_3:5145378-5145397 | None:intergenic | 35.0% | |
| TTGTTGAAGCACATCAACAA+TGG | + | chr2_3:5145410-5145429 | Msa0273560:CDS | 35.0% | |
| GAGTTTATTGCTTCACATAC+TGG | + | chr2_3:5145589-5145608 | Msa0273560:CDS | 35.0% | |
| TAATTAGTCATCTTGGAGCA+TGG | + | chr2_3:5145792-5145811 | Msa0273560:intron | 35.0% | |
| GGTATAAAGGTTGAATGACA+TGG | + | chr2_3:5145877-5145896 | Msa0273560:intron | 35.0% | |
| AAAAGTTCTCGGAGGATATT+TGG | - | chr2_3:5145976-5145995 | None:intergenic | 35.0% | |
| ATTAAGGAACCACCTATCTA+AGG | + | chr2_3:5146369-5146388 | Msa0273560:intron | 35.0% | |
| !! | AATTTCTAGCCTTAGATAGG+TGG | - | chr2_3:5146381-5146400 | None:intergenic | 35.0% |
| CTCATTATCTGAGCAACAAT+TGG | + | chr2_3:5146590-5146609 | Msa0273560:CDS | 35.0% | |
| ! | TGACTGTGATGGAAAAAACA+TGG | + | chr2_3:5146614-5146633 | Msa0273560:CDS | 35.0% |
| ! | GACTGTGATGGAAAAAACAT+GGG | + | chr2_3:5146615-5146634 | Msa0273560:CDS | 35.0% |
| ! | ACTGTGATGGAAAAAACATG+GGG | + | chr2_3:5146616-5146635 | Msa0273560:CDS | 35.0% |
| TGCTTCACTAACAATACCTT+GGG | - | chr2_3:5146688-5146707 | None:intergenic | 35.0% | |
| ! | GATTTTAGACATTACATGGG+AGG | + | chr2_3:5146873-5146892 | Msa0273560:CDS | 35.0% |
| ! | TTTTAGACATTACATGGGAG+GGG | + | chr2_3:5146875-5146894 | Msa0273560:CDS | 35.0% |
| GTGAAGATGGAACTAAGTAT+TGG | + | chr2_3:5146961-5146980 | Msa0273560:CDS | 35.0% | |
| AAGCGAAGAGCTTCATTAAA+AGG | - | chr2_3:5147185-5147204 | None:intergenic | 35.0% | |
| CTGTTTGCATGATTATCTTG+TGG | + | chr2_3:5145341-5145360 | Msa0273560:CDS | 35.0% | |
| ACAGTGTTCTTGACATGATT+GGG | - | chr2_3:5145378-5145397 | None:intergenic | 35.0% | |
| TTGTTGAAGCACATCAACAA+TGG | + | chr2_3:5145410-5145429 | Msa0273560:CDS | 35.0% | |
| GAGTTTATTGCTTCACATAC+TGG | + | chr2_3:5145589-5145608 | Msa0273560:CDS | 35.0% | |
| TAATTAGTCATCTTGGAGCA+TGG | + | chr2_3:5145792-5145811 | Msa0273560:intron | 35.0% | |
| GGTATAAAGGTTGAATGACA+TGG | + | chr2_3:5145877-5145896 | Msa0273560:intron | 35.0% | |
| AAAAGTTCTCGGAGGATATT+TGG | - | chr2_3:5145976-5145995 | None:intergenic | 35.0% | |
| ATTAAGGAACCACCTATCTA+AGG | + | chr2_3:5146369-5146388 | Msa0273560:intron | 35.0% | |
| !! | AATTTCTAGCCTTAGATAGG+TGG | - | chr2_3:5146381-5146400 | None:intergenic | 35.0% |
| CTCATTATCTGAGCAACAAT+TGG | + | chr2_3:5146590-5146609 | Msa0273560:CDS | 35.0% | |
| ! | TGACTGTGATGGAAAAAACA+TGG | + | chr2_3:5146614-5146633 | Msa0273560:CDS | 35.0% |
| ! | GACTGTGATGGAAAAAACAT+GGG | + | chr2_3:5146615-5146634 | Msa0273560:CDS | 35.0% |
| ! | ACTGTGATGGAAAAAACATG+GGG | + | chr2_3:5146616-5146635 | Msa0273560:CDS | 35.0% |
| TGCTTCACTAACAATACCTT+GGG | - | chr2_3:5146688-5146707 | None:intergenic | 35.0% | |
| ! | GATTTTAGACATTACATGGG+AGG | + | chr2_3:5146873-5146892 | Msa0273560:CDS | 35.0% |
| ! | TTTTAGACATTACATGGGAG+GGG | + | chr2_3:5146875-5146894 | Msa0273560:CDS | 35.0% |
| GTGAAGATGGAACTAAGTAT+TGG | + | chr2_3:5146961-5146980 | Msa0273560:CDS | 35.0% | |
| AAGCGAAGAGCTTCATTAAA+AGG | - | chr2_3:5147185-5147204 | None:intergenic | 35.0% | |
| GACAGTGTTCTTGACATGAT+TGG | - | chr2_3:5145379-5145398 | None:intergenic | 40.0% | |
| GGTAACAAGAGTTACAAGCT+TGG | + | chr2_3:5145535-5145554 | Msa0273560:CDS | 40.0% | |
| TCATCTTGGAGGATGAAAGT+TGG | - | chr2_3:5145630-5145649 | None:intergenic | 40.0% | |
| AACTTTCATCCTCCAAGATG+AGG | + | chr2_3:5145629-5145648 | Msa0273560:CDS | 40.0% | |
| GTTACCGATGTTAAAGACCA+AGG | + | chr2_3:5145721-5145740 | Msa0273560:CDS | 40.0% | |
| ! | ACTGCCTTGGTCTTTAACAT+CGG | - | chr2_3:5145728-5145747 | None:intergenic | 40.0% |
| TATAGTTACCACAACTGCCT+TGG | - | chr2_3:5145741-5145760 | None:intergenic | 40.0% | |
| GCTTCATTAAAAGTTCTCGG+AGG | - | chr2_3:5145984-5146003 | None:intergenic | 40.0% | |
| GCACAAACACTAATCGGATT+AGG | - | chr2_3:5146296-5146315 | None:intergenic | 40.0% | |
| AATGTGTTGTAGGATGTTGC+TGG | + | chr2_3:5146508-5146527 | Msa0273560:intron | 40.0% | |
| ATGTGTTGTAGGATGTTGCT+GGG | + | chr2_3:5146509-5146528 | Msa0273560:intron | 40.0% | |
| ! | GGTGTTGTGAAAATCAAGAC+TGG | + | chr2_3:5146558-5146577 | Msa0273560:CDS | 40.0% |
| CAACAATTGGTTGACTGTGA+TGG | + | chr2_3:5146603-5146622 | Msa0273560:CDS | 40.0% | |
| CTGCTTCACTAACAATACCT+TGG | - | chr2_3:5146689-5146708 | None:intergenic | 40.0% | |
| GAAGCAGATTATCCATACCA+AGG | + | chr2_3:5146702-5146721 | Msa0273560:CDS | 40.0% | |
| ! | AGTTGTTGTTCATCATTGGC+AGG | - | chr2_3:5146801-5146820 | None:intergenic | 40.0% |
| TGGTTAAATGGTTGTCCACA+TGG | - | chr2_3:5146912-5146931 | None:intergenic | 40.0% | |
| AGAATTCTTGGGGTAAAGGT+TGG | + | chr2_3:5146991-5147010 | Msa0273560:CDS | 40.0% | |
| GAATTCTTGGGGTAAAGGTT+GGG | + | chr2_3:5146992-5147011 | Msa0273560:CDS | 40.0% | |
| AATTCTTGGGGTAAAGGTTG+GGG | + | chr2_3:5146993-5147012 | Msa0273560:CDS | 40.0% | |
| !! | AAGGCTACATGAAAGTGTTG+AGG | + | chr2_3:5147021-5147040 | Msa0273560:CDS | 40.0% |
| !! | AGGCTACATGAAAGTGTTGA+GGG | + | chr2_3:5147022-5147041 | Msa0273560:CDS | 40.0% |
| !! | ATGAAAGTGTTGAGGGAAAG+TGG | + | chr2_3:5147029-5147048 | Msa0273560:CDS | 40.0% |
| GACAGTGTTCTTGACATGAT+TGG | - | chr2_3:5145379-5145398 | None:intergenic | 40.0% | |
| GGTAACAAGAGTTACAAGCT+TGG | + | chr2_3:5145535-5145554 | Msa0273560:CDS | 40.0% | |
| TCATCTTGGAGGATGAAAGT+TGG | - | chr2_3:5145630-5145649 | None:intergenic | 40.0% | |
| AACTTTCATCCTCCAAGATG+AGG | + | chr2_3:5145629-5145648 | Msa0273560:CDS | 40.0% | |
| GTTACCGATGTTAAAGACCA+AGG | + | chr2_3:5145721-5145740 | Msa0273560:CDS | 40.0% | |
| ! | ACTGCCTTGGTCTTTAACAT+CGG | - | chr2_3:5145728-5145747 | None:intergenic | 40.0% |
| TATAGTTACCACAACTGCCT+TGG | - | chr2_3:5145741-5145760 | None:intergenic | 40.0% | |
| GCTTCATTAAAAGTTCTCGG+AGG | - | chr2_3:5145984-5146003 | None:intergenic | 40.0% | |
| GCACAAACACTAATCGGATT+AGG | - | chr2_3:5146296-5146315 | None:intergenic | 40.0% | |
| AATGTGTTGTAGGATGTTGC+TGG | + | chr2_3:5146508-5146527 | Msa0273560:intron | 40.0% | |
| ATGTGTTGTAGGATGTTGCT+GGG | + | chr2_3:5146509-5146528 | Msa0273560:intron | 40.0% | |
| ! | GGTGTTGTGAAAATCAAGAC+TGG | + | chr2_3:5146558-5146577 | Msa0273560:CDS | 40.0% |
| CAACAATTGGTTGACTGTGA+TGG | + | chr2_3:5146603-5146622 | Msa0273560:CDS | 40.0% | |
| CTGCTTCACTAACAATACCT+TGG | - | chr2_3:5146689-5146708 | None:intergenic | 40.0% | |
| GAAGCAGATTATCCATACCA+AGG | + | chr2_3:5146702-5146721 | Msa0273560:CDS | 40.0% | |
| ! | AGTTGTTGTTCATCATTGGC+AGG | - | chr2_3:5146801-5146820 | None:intergenic | 40.0% |
| TGGTTAAATGGTTGTCCACA+TGG | - | chr2_3:5146912-5146931 | None:intergenic | 40.0% | |
| AGAATTCTTGGGGTAAAGGT+TGG | + | chr2_3:5146991-5147010 | Msa0273560:CDS | 40.0% | |
| GAATTCTTGGGGTAAAGGTT+GGG | + | chr2_3:5146992-5147011 | Msa0273560:CDS | 40.0% | |
| AATTCTTGGGGTAAAGGTTG+GGG | + | chr2_3:5146993-5147012 | Msa0273560:CDS | 40.0% | |
| !! | AAGGCTACATGAAAGTGTTG+AGG | + | chr2_3:5147021-5147040 | Msa0273560:CDS | 40.0% |
| !! | AGGCTACATGAAAGTGTTGA+GGG | + | chr2_3:5147022-5147041 | Msa0273560:CDS | 40.0% |
| !! | ATGAAAGTGTTGAGGGAAAG+TGG | + | chr2_3:5147029-5147048 | Msa0273560:CDS | 40.0% |
| TACTGCAACTGACCTCATCT+TGG | - | chr2_3:5145644-5145663 | None:intergenic | 45.0% | |
| GTTAAAGACCAAGGCAGTTG+TGG | + | chr2_3:5145730-5145749 | Msa0273560:CDS | 45.0% | |
| GATGGAAAAAACATGGGGTG+TGG | + | chr2_3:5146621-5146640 | Msa0273560:CDS | 45.0% | |
| GTCTGACTAACTCCTTGGTA+TGG | - | chr2_3:5146717-5146736 | None:intergenic | 45.0% | |
| ATGTCGTCTGACTAACTCCT+TGG | - | chr2_3:5146722-5146741 | None:intergenic | 45.0% | |
| ACATCAATGCCAACGGATAC+CGG | - | chr2_3:5146846-5146865 | None:intergenic | 45.0% | |
| !! | GTATCCGTTGGCATTGATGT+CGG | + | chr2_3:5146846-5146865 | Msa0273560:CDS | 45.0% |
| ATCACCGACATCAATGCCAA+CGG | - | chr2_3:5146853-5146872 | None:intergenic | 45.0% | |
| TACATGGGAGGGGTTTATTC+AGG | + | chr2_3:5146885-5146904 | Msa0273560:CDS | 45.0% | |
| GGTTACGGTGTAAGTGAAGA+TGG | + | chr2_3:5146948-5146967 | Msa0273560:CDS | 45.0% | |
| TACTGCAACTGACCTCATCT+TGG | - | chr2_3:5145644-5145663 | None:intergenic | 45.0% | |
| GTTAAAGACCAAGGCAGTTG+TGG | + | chr2_3:5145730-5145749 | Msa0273560:CDS | 45.0% | |
| GATGGAAAAAACATGGGGTG+TGG | + | chr2_3:5146621-5146640 | Msa0273560:CDS | 45.0% | |
| GTCTGACTAACTCCTTGGTA+TGG | - | chr2_3:5146717-5146736 | None:intergenic | 45.0% | |
| ATGTCGTCTGACTAACTCCT+TGG | - | chr2_3:5146722-5146741 | None:intergenic | 45.0% | |
| ACATCAATGCCAACGGATAC+CGG | - | chr2_3:5146846-5146865 | None:intergenic | 45.0% | |
| !! | GTATCCGTTGGCATTGATGT+CGG | + | chr2_3:5146846-5146865 | Msa0273560:CDS | 45.0% |
| ATCACCGACATCAATGCCAA+CGG | - | chr2_3:5146853-5146872 | None:intergenic | 45.0% | |
| TACATGGGAGGGGTTTATTC+AGG | + | chr2_3:5146885-5146904 | Msa0273560:CDS | 45.0% | |
| GGTTACGGTGTAAGTGAAGA+TGG | + | chr2_3:5146948-5146967 | Msa0273560:CDS | 45.0% | |
| TGCAACTGACCTCATCTTGG+AGG | - | chr2_3:5145641-5145660 | None:intergenic | 50.0% | |
| AACACCTTCTACAGCAGCCA+CGG | - | chr2_3:5146544-5146563 | None:intergenic | 50.0% | |
| GGAAAAAACATGGGGTGTGG+TGG | + | chr2_3:5146624-5146643 | Msa0273560:CDS | 50.0% | |
| AAAAACATGGGGTGTGGTGG+AGG | + | chr2_3:5146627-5146646 | Msa0273560:CDS | 50.0% | |
| ACAAGCAGTAGCACAACAGC+CGG | + | chr2_3:5146824-5146843 | Msa0273560:CDS | 50.0% | |
| GGGGTTTATTCAGGACCATG+TGG | + | chr2_3:5146894-5146913 | Msa0273560:CDS | 50.0% | |
| GCAGCAACGGCATGGTTAAA+TGG | - | chr2_3:5146924-5146943 | None:intergenic | 50.0% | |
| ACCGTAACCAACTGCAGCAA+CGG | - | chr2_3:5146937-5146956 | None:intergenic | 50.0% | |
| GGTAAAGGTTGGGGTGAAGA+AGG | + | chr2_3:5147002-5147021 | Msa0273560:CDS | 50.0% | |
| TGCAACTGACCTCATCTTGG+AGG | - | chr2_3:5145641-5145660 | None:intergenic | 50.0% | |
| AACACCTTCTACAGCAGCCA+CGG | - | chr2_3:5146544-5146563 | None:intergenic | 50.0% | |
| GGAAAAAACATGGGGTGTGG+TGG | + | chr2_3:5146624-5146643 | Msa0273560:CDS | 50.0% | |
| AAAAACATGGGGTGTGGTGG+AGG | + | chr2_3:5146627-5146646 | Msa0273560:CDS | 50.0% | |
| ACAAGCAGTAGCACAACAGC+CGG | + | chr2_3:5146824-5146843 | Msa0273560:CDS | 50.0% | |
| GGGGTTTATTCAGGACCATG+TGG | + | chr2_3:5146894-5146913 | Msa0273560:CDS | 50.0% | |
| GCAGCAACGGCATGGTTAAA+TGG | - | chr2_3:5146924-5146943 | None:intergenic | 50.0% | |
| ACCGTAACCAACTGCAGCAA+CGG | - | chr2_3:5146937-5146956 | None:intergenic | 50.0% | |
| GGTAAAGGTTGGGGTGAAGA+AGG | + | chr2_3:5147002-5147021 | Msa0273560:CDS | 50.0% | |
| ! | TTGCTGGGCATTTTCAGCCG+TGG | + | chr2_3:5146524-5146543 | Msa0273560:CDS | 55.0% |
| ! | GGGGTGTGGTGGAGGTTATA+TGG | + | chr2_3:5146635-5146654 | Msa0273560:CDS | 55.0% |
| AACCATGCCGTTGCTGCAGT+TGG | + | chr2_3:5146927-5146946 | Msa0273560:CDS | 55.0% | |
| AACCAACTGCAGCAACGGCA+TGG | - | chr2_3:5146932-5146951 | None:intergenic | 55.0% | |
| GCCGTTGCTGCAGTTGGTTA+CGG | + | chr2_3:5146933-5146952 | Msa0273560:CDS | 55.0% | |
| AGGGAAAGTGGTGAACCTCG+AGG | + | chr2_3:5147041-5147060 | Msa0273560:CDS | 55.0% | |
| GGTGAACCTCGAGGTCATTG+TGG | + | chr2_3:5147050-5147069 | Msa0273560:CDS | 55.0% | |
| GCAATGCCACAATGACCTCG+AGG | - | chr2_3:5147059-5147078 | None:intergenic | 55.0% | |
| ! | TTGCTGGGCATTTTCAGCCG+TGG | + | chr2_3:5146524-5146543 | Msa0273560:CDS | 55.0% |
| ! | GGGGTGTGGTGGAGGTTATA+TGG | + | chr2_3:5146635-5146654 | Msa0273560:CDS | 55.0% |
| AACCATGCCGTTGCTGCAGT+TGG | + | chr2_3:5146927-5146946 | Msa0273560:CDS | 55.0% | |
| AACCAACTGCAGCAACGGCA+TGG | - | chr2_3:5146932-5146951 | None:intergenic | 55.0% | |
| GCCGTTGCTGCAGTTGGTTA+CGG | + | chr2_3:5146933-5146952 | Msa0273560:CDS | 55.0% | |
| AGGGAAAGTGGTGAACCTCG+AGG | + | chr2_3:5147041-5147060 | Msa0273560:CDS | 55.0% | |
| GGTGAACCTCGAGGTCATTG+TGG | + | chr2_3:5147050-5147069 | Msa0273560:CDS | 55.0% | |
| GCAATGCCACAATGACCTCG+AGG | - | chr2_3:5147059-5147078 | None:intergenic | 55.0% | |
| TCAGCCGTGGCTGCTGTAGA+AGG | + | chr2_3:5146537-5146556 | Msa0273560:CDS | 60.0% | |
| GCACAACAGCCGGTATCCGT+TGG | + | chr2_3:5146834-5146853 | Msa0273560:CDS | 60.0% | |
| TCAGCCGTGGCTGCTGTAGA+AGG | + | chr2_3:5146537-5146556 | Msa0273560:CDS | 60.0% | |
| GCACAACAGCCGGTATCCGT+TGG | + | chr2_3:5146834-5146853 | Msa0273560:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 5145266 | 5147240 | 5145266 | ID=Msa0273560;Name=Msa0273560 |
| chr2_3 | mRNA | 5145266 | 5147240 | 5145266 | ID=Msa0273560-mRNA-1;Parent=Msa0273560;Name=Msa0273560-mRNA-1;_AED=0.21;_eAED=0.21;_QI=59|1|1|1|1|1|2|134|337 |
| chr2_3 | exon | 5145266 | 5145751 | 5145266 | ID=Msa0273560-mRNA-1:exon:2503;Parent=Msa0273560-mRNA-1 |
| chr2_3 | exon | 5146520 | 5147240 | 5146520 | ID=Msa0273560-mRNA-1:exon:2504;Parent=Msa0273560-mRNA-1 |
| chr2_3 | five_prime_UTR | 5145266 | 5145324 | 5145266 | ID=Msa0273560-mRNA-1:five_prime_utr;Parent=Msa0273560-mRNA-1 |
| chr2_3 | CDS | 5145325 | 5145751 | 5145325 | ID=Msa0273560-mRNA-1:cds;Parent=Msa0273560-mRNA-1 |
| chr2_3 | CDS | 5146520 | 5147106 | 5146520 | ID=Msa0273560-mRNA-1:cds;Parent=Msa0273560-mRNA-1 |
| chr2_3 | three_prime_UTR | 5147107 | 5147240 | 5147107 | ID=Msa0273560-mRNA-1:three_prime_utr;Parent=Msa0273560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
