Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0142230 | sp|Q9FNL7|PTR3_ARATH | 61.897 | 580 | 209 | 4 | 6 | 576 | 6 | 582 | 0.0 | 719 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0142230 | A0A072VH07 | 97.074 | 581 | 17 | 0 | 1 | 581 | 3 | 583 | 0.0 | 1157 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009610 | Msa0142230 | 0.809344 | 1.981918e-50 | -8.615850e-47 |
| Msa0021460 | Msa0142230 | 0.894578 | 2.162301e-75 | -8.615850e-47 |
| Msa0033340 | Msa0142230 | 0.839477 | 1.547554e-57 | -8.615850e-47 |
| Msa0109970 | Msa0142230 | 0.950215 | 2.606340e-108 | -8.615850e-47 |
| Msa0109990 | Msa0142230 | 0.893006 | 9.386499e-75 | -8.615850e-47 |
| Msa0137330 | Msa0142230 | 0.805490 | 1.301989e-49 | -8.615850e-47 |
| Msa0142230 | Msa0156170 | 0.952171 | 4.300368e-110 | -8.615850e-47 |
| Msa0142230 | Msa0156190 | 0.920302 | 1.520323e-87 | -8.615850e-47 |
| Msa0142230 | Msa0193010 | 0.865551 | 5.439190e-65 | -8.615850e-47 |
| Msa0142230 | Msa0203070 | 0.841532 | 4.487950e-58 | -8.615850e-47 |
| Msa0142230 | Msa0232860 | 0.801435 | 9.014822e-49 | -8.615850e-47 |
| Msa0142230 | Msa0235190 | 0.848905 | 4.549599e-60 | -8.615850e-47 |
| Msa0142230 | Msa0273570 | 0.827150 | 1.834256e-54 | -8.615850e-47 |
| Msa0142230 | Msa0273580 | 0.805192 | 1.502741e-49 | -8.615850e-47 |
| Msa0142230 | Msa0284810 | 0.847707 | 9.753333e-60 | -8.615850e-47 |
| Msa0142230 | Msa0313780 | 0.812463 | 4.186528e-51 | -8.615850e-47 |
| Msa0142230 | Msa0313790 | 0.805289 | 1.434706e-49 | -8.615850e-47 |
| Msa0142230 | Msa0313920 | 0.812216 | 4.740317e-51 | -8.615850e-47 |
| Msa0142230 | Msa0323550 | 0.847513 | 1.102488e-59 | -8.615850e-47 |
| Msa0142230 | Msa0331430 | 0.824033 | 1.005132e-53 | -8.615850e-47 |
| Msa0142230 | Msa0452410 | 0.802423 | 5.649535e-49 | -8.615850e-47 |
| Msa0142230 | Msa0458700 | 0.823980 | 1.034108e-53 | -8.615850e-47 |
| Msa0142230 | Msa0533290 | 0.801828 | 7.489885e-49 | -8.615850e-47 |
| Msa0142230 | Msa0533430 | 0.841660 | 4.154015e-58 | -8.615850e-47 |
| Msa0142230 | Msa0580610 | 0.833029 | 6.742688e-56 | -8.615850e-47 |
| Msa0142230 | Msa0584130 | 0.812814 | 3.508879e-51 | -8.615850e-47 |
| Msa0142230 | Msa0629850 | 0.809407 | 1.920956e-50 | -8.615850e-47 |
| Msa0142230 | Msa0629930 | 0.811937 | 5.452874e-51 | -8.615850e-47 |
| Msa0142230 | Msa0629940 | 0.840457 | 8.595475e-58 | -8.615850e-47 |
| Msa0142230 | Msa0696800 | 0.819645 | 1.041619e-52 | -8.615850e-47 |
| Msa0142230 | Msa0702870 | 0.802421 | 5.656193e-49 | -8.615850e-47 |
| Msa0142230 | Msa0754180 | 0.830526 | 2.794874e-55 | -8.615850e-47 |
| Msa0142230 | Msa0784580 | 0.826563 | 2.533046e-54 | -8.615850e-47 |
| Msa0142230 | Msa0808180 | 0.802348 | 5.855215e-49 | -8.615850e-47 |
| Msa0142230 | Msa0818010 | 0.853635 | 2.097117e-61 | -8.615850e-47 |
| Msa0142230 | Msa0818030 | 0.850156 | 2.036719e-60 | -8.615850e-47 |
| Msa0142230 | Msa0858360 | 0.823556 | 1.299723e-53 | -8.615850e-47 |
| Msa0142230 | Msa0884920 | 0.804485 | 2.111581e-49 | -8.615850e-47 |
| Msa0142230 | Msa0884980 | 0.800271 | 1.558348e-48 | -8.615850e-47 |
| Msa0142230 | Msa0940090 | 0.822861 | 1.888996e-53 | -8.615850e-47 |
| Msa0142230 | Msa1006250 | 0.835239 | 1.883973e-56 | -8.615850e-47 |
| Msa0142230 | Msa1006400 | 0.805418 | 1.347584e-49 | -8.615850e-47 |
| Msa0142230 | Msa1009190 | 0.810111 | 1.356058e-50 | -8.615850e-47 |
| Msa0142230 | Msa1009270 | 0.814297 | 1.654850e-51 | -8.615850e-47 |
| Msa0142230 | Msa1027240 | 0.820469 | 6.748945e-53 | -8.615850e-47 |
| Msa0142230 | Msa1048490 | 0.825353 | 4.908606e-54 | -8.615850e-47 |
| Msa0142230 | Msa1048610 | 0.806145 | 9.482174e-50 | -8.615850e-47 |
| Msa0142230 | Msa1050480 | 0.827664 | 1.380392e-54 | -8.615850e-47 |
| Msa0142230 | Msa1050490 | 0.806797 | 6.910158e-50 | -8.615850e-47 |
| Msa0142230 | Msa1198090 | 0.839190 | 1.837248e-57 | -8.615850e-47 |
| Msa0142230 | Msa1232130 | 0.812740 | 3.641682e-51 | -8.615850e-47 |
| Msa0142230 | Msa1238130 | 0.804849 | 1.772949e-49 | -8.615850e-47 |
| Msa0142230 | Msa1289540 | 0.800666 | 1.295155e-48 | -8.615850e-47 |
| Msa0142230 | Msa1406600 | 0.889219 | 2.946741e-73 | -8.615850e-47 |
| Msa0142230 | Msa1444370 | 0.823072 | 1.686099e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0142230 | MtrunA17_Chr1g0166741 | 97.074 | 581 | 17 | 0 | 1 | 581 | 3 | 583 | 0.0 | 1157 |
| Msa0142230 | MtrunA17_Chr1g0166791 | 81.100 | 582 | 100 | 2 | 1 | 575 | 3 | 581 | 0.0 | 983 |
| Msa0142230 | MtrunA17_Chr1g0166771 | 89.630 | 540 | 56 | 0 | 39 | 578 | 5 | 544 | 0.0 | 976 |
| Msa0142230 | MtrunA17_Chr1g0187241 | 68.581 | 592 | 173 | 5 | 1 | 581 | 1 | 590 | 0.0 | 853 |
| Msa0142230 | MtrunA17_Chr1g0166711 | 71.575 | 584 | 158 | 2 | 1 | 577 | 1 | 583 | 0.0 | 843 |
| Msa0142230 | MtrunA17_Chr7g0261811 | 56.995 | 579 | 238 | 4 | 8 | 577 | 10 | 586 | 0.0 | 699 |
| Msa0142230 | MtrunA17_Chr7g0261791 | 57.313 | 588 | 238 | 5 | 2 | 579 | 6 | 590 | 0.0 | 697 |
| Msa0142230 | MtrunA17_Chr7g0261881 | 56.747 | 578 | 239 | 4 | 8 | 576 | 10 | 585 | 0.0 | 695 |
| Msa0142230 | MtrunA17_Chr7g0261771 | 55.938 | 581 | 245 | 5 | 8 | 579 | 14 | 592 | 0.0 | 691 |
| Msa0142230 | MtrunA17_Chr1g0166731 | 72.281 | 469 | 122 | 2 | 111 | 572 | 8 | 475 | 0.0 | 669 |
| Msa0142230 | MtrunA17_Chr7g0261851 | 55.932 | 590 | 249 | 4 | 1 | 581 | 4 | 591 | 0.0 | 667 |
| Msa0142230 | MtrunA17_Chr7g0261661 | 55.672 | 476 | 200 | 5 | 113 | 579 | 1 | 474 | 0.0 | 550 |
| Msa0142230 | MtrunA17_Chr3g0114501 | 47.703 | 566 | 282 | 5 | 8 | 563 | 5 | 566 | 0.0 | 535 |
| Msa0142230 | MtrunA17_Chr7g0261751 | 51.800 | 500 | 194 | 6 | 8 | 462 | 14 | 511 | 0.0 | 528 |
| Msa0142230 | MtrunA17_Chr8g0375291 | 42.655 | 565 | 305 | 4 | 2 | 550 | 13 | 574 | 8.92e-169 | 492 |
| Msa0142230 | MtrunA17_Chr8g0375311 | 42.032 | 571 | 312 | 4 | 1 | 555 | 12 | 579 | 3.90e-168 | 490 |
| Msa0142230 | MtrunA17_Chr3g0104011 | 42.757 | 573 | 309 | 7 | 1 | 561 | 1 | 566 | 5.28e-163 | 476 |
| Msa0142230 | MtrunA17_Chr7g0241741 | 41.696 | 566 | 314 | 5 | 10 | 564 | 7 | 567 | 5.05e-159 | 466 |
| Msa0142230 | MtrunA17_Chr8g0375351 | 39.478 | 575 | 321 | 6 | 1 | 555 | 12 | 579 | 3.59e-157 | 462 |
| Msa0142230 | MtrunA17_Chr4g0005901 | 41.725 | 568 | 311 | 6 | 2 | 558 | 13 | 571 | 2.30e-156 | 460 |
| Msa0142230 | MtrunA17_Chr8g0375341 | 38.704 | 571 | 331 | 4 | 1 | 555 | 12 | 579 | 1.81e-155 | 458 |
| Msa0142230 | MtrunA17_Chr8g0375321 | 39.716 | 564 | 317 | 5 | 8 | 555 | 20 | 576 | 1.81e-153 | 452 |
| Msa0142230 | MtrunA17_Chr8g0375331 | 40.426 | 564 | 313 | 5 | 8 | 555 | 7 | 563 | 1.21e-152 | 450 |
| Msa0142230 | MtrunA17_Chr7g0261731 | 59.763 | 338 | 133 | 2 | 8 | 344 | 14 | 349 | 3.75e-152 | 441 |
| Msa0142230 | MtrunA17_Chr7g0240381 | 40.603 | 564 | 317 | 10 | 9 | 567 | 13 | 563 | 8.65e-145 | 431 |
| Msa0142230 | MtrunA17_Chr3g0112671 | 39.568 | 556 | 322 | 9 | 8 | 559 | 16 | 561 | 9.66e-143 | 425 |
| Msa0142230 | MtrunA17_Chr8g0375361 | 38.220 | 573 | 336 | 4 | 1 | 558 | 12 | 581 | 3.25e-142 | 424 |
| Msa0142230 | MtrunA17_Chr3g0112611 | 38.929 | 560 | 322 | 8 | 8 | 555 | 15 | 566 | 3.25e-142 | 424 |
| Msa0142230 | MtrunA17_Chr4g0008651 | 38.121 | 564 | 333 | 9 | 9 | 563 | 18 | 574 | 4.09e-136 | 409 |
| Msa0142230 | MtrunA17_Chr3g0142091 | 38.368 | 576 | 339 | 8 | 2 | 569 | 3 | 570 | 3.07e-135 | 406 |
| Msa0142230 | MtrunA17_Chr3g0142101 | 37.255 | 561 | 336 | 8 | 2 | 555 | 12 | 563 | 9.89e-135 | 405 |
| Msa0142230 | MtrunA17_Chr3g0077151 | 38.298 | 564 | 298 | 9 | 11 | 558 | 14 | 543 | 5.89e-130 | 391 |
| Msa0142230 | MtrunA17_Chr4g0014871 | 37.230 | 556 | 315 | 8 | 13 | 556 | 18 | 551 | 4.03e-127 | 384 |
| Msa0142230 | MtrunA17_Chr4g0014841 | 37.814 | 558 | 310 | 8 | 11 | 556 | 15 | 547 | 1.12e-126 | 383 |
| Msa0142230 | MtrunA17_Chr4g0014791 | 38.669 | 556 | 304 | 8 | 13 | 556 | 17 | 547 | 1.90e-126 | 382 |
| Msa0142230 | MtrunA17_Chr4g0014781 | 37.477 | 555 | 314 | 8 | 13 | 556 | 17 | 549 | 3.38e-126 | 382 |
| Msa0142230 | MtrunA17_Chr5g0399061 | 36.411 | 574 | 340 | 7 | 17 | 574 | 19 | 583 | 3.17e-125 | 380 |
| Msa0142230 | MtrunA17_Chr5g0399071 | 38.287 | 572 | 331 | 7 | 17 | 569 | 17 | 585 | 1.41e-124 | 379 |
| Msa0142230 | MtrunA17_Chr4g0014801 | 38.018 | 555 | 311 | 8 | 13 | 556 | 17 | 549 | 1.51e-124 | 378 |
| Msa0142230 | MtrunA17_Chr5g0400371 | 34.813 | 563 | 352 | 4 | 9 | 557 | 96 | 657 | 2.05e-124 | 381 |
| Msa0142230 | MtrunA17_Chr1g0213711 | 34.347 | 559 | 358 | 5 | 5 | 557 | 1 | 556 | 1.49e-122 | 374 |
| Msa0142230 | MtrunA17_Chr5g0422881 | 35.315 | 555 | 340 | 7 | 19 | 558 | 14 | 564 | 1.12e-121 | 371 |
| Msa0142230 | MtrunA17_Chr7g0255621 | 34.912 | 570 | 344 | 7 | 2 | 555 | 4 | 562 | 1.54e-121 | 371 |
| Msa0142230 | MtrunA17_Chr4g0056431 | 38.640 | 559 | 324 | 5 | 17 | 558 | 17 | 573 | 3.06e-121 | 370 |
| Msa0142230 | MtrunA17_Chr4g0054891 | 34.111 | 557 | 357 | 4 | 8 | 555 | 93 | 648 | 5.39e-121 | 372 |
| Msa0142230 | MtrunA17_Chr7g0255601 | 33.838 | 594 | 373 | 6 | 1 | 578 | 3 | 592 | 8.05e-120 | 367 |
| Msa0142230 | MtrunA17_Chr5g0439381 | 37.634 | 558 | 329 | 6 | 13 | 563 | 16 | 561 | 9.71e-119 | 363 |
| Msa0142230 | MtrunA17_Chr7g0218851 | 34.470 | 557 | 356 | 5 | 18 | 567 | 39 | 593 | 2.28e-118 | 363 |
| Msa0142230 | MtrunA17_Chr7g0214461 | 33.945 | 545 | 351 | 5 | 29 | 567 | 82 | 623 | 2.62e-118 | 364 |
| Msa0142230 | MtrunA17_Chr7g0217461 | 34.164 | 562 | 350 | 5 | 11 | 555 | 10 | 568 | 2.83e-118 | 362 |
| Msa0142230 | MtrunA17_Chr4g0063591 | 38.204 | 568 | 326 | 6 | 1 | 555 | 1 | 556 | 2.02e-116 | 357 |
| Msa0142230 | MtrunA17_Chr8g0353031 | 37.681 | 552 | 299 | 8 | 26 | 555 | 19 | 547 | 3.12e-116 | 357 |
| Msa0142230 | MtrunA17_Chr7g0255611 | 34.261 | 575 | 352 | 9 | 1 | 555 | 3 | 571 | 4.34e-115 | 355 |
| Msa0142230 | MtrunA17_Chr2g0284701 | 34.615 | 572 | 350 | 7 | 13 | 560 | 19 | 590 | 2.53e-111 | 345 |
| Msa0142230 | MtrunA17_Chr7g0214731 | 32.997 | 594 | 378 | 8 | 6 | 579 | 40 | 633 | 2.21e-109 | 341 |
| Msa0142230 | MtrunA17_Chr5g0415791 | 33.972 | 574 | 348 | 6 | 25 | 575 | 29 | 594 | 3.18e-108 | 337 |
| Msa0142230 | MtrunA17_Chr4g0011041 | 32.337 | 569 | 365 | 8 | 2 | 555 | 15 | 578 | 1.31e-107 | 335 |
| Msa0142230 | MtrunA17_Chr5g0415961 | 34.155 | 568 | 349 | 7 | 13 | 560 | 12 | 574 | 9.17e-105 | 327 |
| Msa0142230 | MtrunA17_Chr2g0276751 | 32.014 | 581 | 377 | 8 | 1 | 576 | 14 | 581 | 1.45e-102 | 322 |
| Msa0142230 | MtrunA17_Chr3g0133341 | 33.149 | 543 | 344 | 6 | 24 | 555 | 13 | 547 | 1.88e-100 | 316 |
| Msa0142230 | MtrunA17_Chr4g0011471 | 33.583 | 533 | 338 | 5 | 36 | 555 | 27 | 556 | 8.55e-100 | 314 |
| Msa0142230 | MtrunA17_Chr8g0362711 | 32.689 | 569 | 351 | 7 | 14 | 559 | 13 | 572 | 3.99e-99 | 312 |
| Msa0142230 | MtrunA17_Chr4g0060001 | 32.253 | 586 | 369 | 10 | 1 | 562 | 1 | 582 | 1.58e-95 | 304 |
| Msa0142230 | MtrunA17_Chr4g0014861 | 36.905 | 420 | 245 | 5 | 148 | 556 | 16 | 426 | 1.44e-93 | 293 |
| Msa0142230 | MtrunA17_Chr3g0082631 | 35.091 | 493 | 255 | 8 | 109 | 569 | 11 | 470 | 2.57e-93 | 294 |
| Msa0142230 | MtrunA17_Chr7g0271221 | 31.059 | 557 | 372 | 6 | 12 | 564 | 4 | 552 | 2.85e-93 | 297 |
| Msa0142230 | MtrunA17_Chr7g0240271 | 30.651 | 584 | 388 | 6 | 8 | 576 | 7 | 588 | 5.12e-93 | 297 |
| Msa0142230 | MtrunA17_Chr8g0379971 | 33.841 | 591 | 343 | 13 | 13 | 560 | 8 | 593 | 2.68e-92 | 295 |
| Msa0142230 | MtrunA17_Chr1g0193391 | 30.139 | 574 | 382 | 9 | 6 | 572 | 1 | 562 | 9.38e-92 | 294 |
| Msa0142230 | MtrunA17_Chr4g0059991 | 32.847 | 548 | 342 | 8 | 30 | 555 | 27 | 570 | 3.85e-90 | 290 |
| Msa0142230 | MtrunA17_Chr4g0059981 | 30.066 | 602 | 370 | 7 | 5 | 567 | 1 | 590 | 5.49e-90 | 290 |
| Msa0142230 | MtrunA17_Chr8g0362781 | 30.490 | 551 | 363 | 5 | 24 | 555 | 29 | 578 | 1.34e-89 | 288 |
| Msa0142230 | MtrunA17_Chr4g0059971 | 31.826 | 553 | 346 | 8 | 30 | 558 | 39 | 584 | 1.63e-89 | 288 |
| Msa0142230 | MtrunA17_Chr7g0240281 | 33.452 | 562 | 356 | 9 | 12 | 556 | 10 | 570 | 8.49e-89 | 286 |
| Msa0142230 | MtrunA17_Chr8g0390331 | 29.604 | 581 | 381 | 8 | 19 | 581 | 9 | 579 | 1.30e-86 | 280 |
| Msa0142230 | MtrunA17_Chr4g0069581 | 31.215 | 535 | 358 | 5 | 42 | 572 | 3 | 531 | 3.00e-85 | 276 |
| Msa0142230 | MtrunA17_Chr1g0157601 | 31.330 | 549 | 341 | 11 | 29 | 555 | 19 | 553 | 5.38e-85 | 275 |
| Msa0142230 | MtrunA17_Chr8g0362801 | 32.762 | 467 | 295 | 6 | 113 | 562 | 1 | 465 | 4.29e-82 | 265 |
| Msa0142230 | MtrunA17_Chr8g0379991 | 30.998 | 571 | 333 | 10 | 46 | 560 | 1 | 566 | 4.99e-80 | 262 |
| Msa0142230 | MtrunA17_Chr6g0451841 | 30.466 | 558 | 328 | 12 | 32 | 560 | 12 | 538 | 2.39e-79 | 259 |
| Msa0142230 | MtrunA17_Chr1g0147631 | 30.072 | 552 | 353 | 9 | 25 | 555 | 25 | 564 | 3.14e-77 | 255 |
| Msa0142230 | MtrunA17_Chr1g0157611 | 29.277 | 567 | 369 | 10 | 24 | 570 | 15 | 569 | 1.11e-75 | 251 |
| Msa0142230 | MtrunA17_Chr2g0331471 | 31.023 | 577 | 356 | 15 | 25 | 574 | 88 | 649 | 1.88e-74 | 251 |
| Msa0142230 | MtrunA17_Chr4g0003761 | 29.359 | 562 | 370 | 12 | 29 | 572 | 34 | 586 | 5.31e-74 | 247 |
| Msa0142230 | MtrunA17_Chr7g0235521 | 32.826 | 460 | 292 | 6 | 113 | 557 | 1 | 458 | 3.15e-73 | 242 |
| Msa0142230 | MtrunA17_Chr1g0157621 | 29.848 | 526 | 344 | 10 | 46 | 555 | 1 | 517 | 1.95e-72 | 242 |
| Msa0142230 | MtrunA17_Chr7g0240181 | 32.826 | 460 | 292 | 6 | 113 | 557 | 1 | 458 | 3.35e-72 | 239 |
| Msa0142230 | MtrunA17_Chr7g0240211 | 32.826 | 460 | 292 | 6 | 113 | 557 | 1 | 458 | 3.46e-72 | 239 |
| Msa0142230 | MtrunA17_Chr2g0331511 | 29.696 | 559 | 348 | 15 | 25 | 555 | 21 | 562 | 3.86e-72 | 243 |
| Msa0142230 | MtrunA17_Chr2g0331521 | 26.117 | 582 | 392 | 10 | 25 | 579 | 22 | 592 | 4.99e-72 | 242 |
| Msa0142230 | MtrunA17_Chr7g0240131 | 32.609 | 460 | 293 | 6 | 113 | 557 | 1 | 458 | 6.77e-72 | 238 |
| Msa0142230 | MtrunA17_Chr2g0331481 | 31.023 | 577 | 355 | 16 | 25 | 574 | 26 | 586 | 1.10e-71 | 242 |
| Msa0142230 | MtrunA17_Chr2g0325951 | 26.799 | 556 | 381 | 7 | 13 | 555 | 2 | 544 | 7.71e-71 | 237 |
| Msa0142230 | MtrunA17_Chr3g0142111 | 36.482 | 307 | 191 | 2 | 2 | 307 | 23 | 326 | 8.39e-69 | 226 |
| Msa0142230 | MtrunA17_Chr7g0261721 | 51.152 | 217 | 95 | 3 | 372 | 581 | 8 | 220 | 1.55e-68 | 221 |
| Msa0142230 | MtrunA17_Chr7g0240151 | 31.739 | 460 | 279 | 7 | 113 | 557 | 1 | 440 | 1.36e-66 | 224 |
| Msa0142230 | MtrunA17_Chr5g0415841 | 30.803 | 461 | 296 | 8 | 113 | 555 | 1 | 456 | 2.02e-66 | 223 |
| Msa0142230 | MtrunA17_Chr2g0326211 | 27.599 | 558 | 374 | 10 | 13 | 555 | 2 | 544 | 2.41e-66 | 225 |
| Msa0142230 | MtrunA17_Chr2g0325961 | 27.886 | 563 | 367 | 10 | 13 | 555 | 2 | 545 | 4.93e-66 | 224 |
| Msa0142230 | MtrunA17_Chr2g0331461 | 28.943 | 577 | 374 | 14 | 25 | 578 | 26 | 589 | 2.37e-62 | 217 |
| Msa0142230 | MtrunA17_Chr1g0177591 | 28.312 | 551 | 357 | 15 | 25 | 560 | 42 | 569 | 2.56e-62 | 215 |
| Msa0142230 | MtrunA17_Chr7g0234381 | 31.556 | 450 | 272 | 7 | 110 | 555 | 1 | 418 | 1.07e-60 | 207 |
| Msa0142230 | MtrunA17_Chr3g0112631 | 37.500 | 272 | 157 | 5 | 300 | 559 | 3 | 273 | 1.40e-60 | 202 |
| Msa0142230 | MtrunA17_Chr7g0234151 | 31.333 | 450 | 273 | 7 | 110 | 555 | 1 | 418 | 6.97e-58 | 199 |
| Msa0142230 | MtrunA17_Chr7g0234181 | 31.448 | 442 | 273 | 7 | 115 | 555 | 1 | 413 | 5.68e-56 | 194 |
| Msa0142230 | MtrunA17_Chr1g0166721 | 63.846 | 130 | 42 | 1 | 1 | 130 | 1 | 125 | 3.76e-53 | 178 |
| Msa0142230 | MtrunA17_Chr1g0177611 | 29.314 | 423 | 275 | 10 | 151 | 560 | 29 | 440 | 4.72e-53 | 187 |
| Msa0142230 | MtrunA17_Chr3g0142121 | 37.354 | 257 | 157 | 4 | 301 | 555 | 11 | 265 | 1.27e-50 | 176 |
| Msa0142230 | MtrunA17_Chr1g0177631 | 29.147 | 422 | 277 | 9 | 151 | 560 | 29 | 440 | 4.05e-50 | 179 |
| Msa0142230 | MtrunA17_Chr4g0060071 | 33.779 | 299 | 181 | 4 | 270 | 555 | 1 | 295 | 3.35e-47 | 167 |
| Msa0142230 | MtrunA17_Chr7g0261671 | 66.019 | 103 | 35 | 0 | 8 | 110 | 15 | 117 | 4.05e-44 | 152 |
| Msa0142230 | MtrunA17_Chr7g0261831 | 48.718 | 156 | 76 | 3 | 255 | 408 | 1 | 154 | 2.36e-43 | 154 |
| Msa0142230 | MtrunA17_Chr3g0112651 | 42.353 | 170 | 93 | 2 | 111 | 280 | 20 | 184 | 6.19e-38 | 139 |
| Msa0142230 | MtrunA17_Chr1g0147591 | 32.500 | 200 | 119 | 4 | 149 | 338 | 3 | 196 | 2.86e-27 | 109 |
| Msa0142230 | MtrunA17_Chr7g0261821 | 61.194 | 67 | 26 | 0 | 496 | 562 | 1 | 67 | 2.90e-23 | 93.6 |
| Msa0142230 | MtrunA17_Chr4g0014851 | 41.837 | 98 | 57 | 0 | 13 | 110 | 18 | 115 | 4.44e-23 | 96.3 |
| Msa0142230 | MtrunA17_Chr3g0112661 | 41.584 | 101 | 59 | 0 | 10 | 110 | 16 | 116 | 1.00e-21 | 91.7 |
| Msa0142230 | MtrunA17_Chr4g0060061 | 36.364 | 121 | 77 | 0 | 138 | 258 | 8 | 128 | 7.05e-21 | 89.0 |
| Msa0142230 | MtrunA17_Chr8g0362791 | 40.698 | 86 | 51 | 0 | 30 | 115 | 41 | 126 | 1.41e-15 | 73.9 |
| Msa0142230 | MtrunA17_Chr3g0082621 | 47.761 | 67 | 35 | 0 | 44 | 110 | 5 | 71 | 1.07e-14 | 69.7 |
| Msa0142230 | MtrunA17_Chr2g0326221 | 25.439 | 228 | 147 | 5 | 329 | 555 | 15 | 220 | 1.28e-14 | 73.6 |
| Msa0142230 | MtrunA17_Chr4g0060051 | 34.906 | 106 | 66 | 1 | 1 | 106 | 1 | 103 | 1.47e-14 | 70.9 |
| Msa0142230 | MtrunA17_Chr7g0261841 | 53.704 | 54 | 24 | 1 | 113 | 165 | 1 | 54 | 9.88e-13 | 63.9 |
| Msa0142230 | MtrunA17_Chr1g0166761 | 78.947 | 38 | 7 | 1 | 1 | 38 | 3 | 39 | 7.39e-12 | 61.2 |
| Msa0142230 | MtrunA17_Chr7g0240221 | 32.673 | 101 | 66 | 1 | 1 | 99 | 1 | 101 | 3.92e-11 | 60.5 |
| Msa0142230 | MtrunA17_Chr7g0240191 | 32.673 | 101 | 66 | 1 | 1 | 99 | 1 | 101 | 3.92e-11 | 60.5 |
| Msa0142230 | MtrunA17_Chr7g0240161 | 32.673 | 101 | 66 | 1 | 1 | 99 | 1 | 101 | 3.92e-11 | 60.5 |
| Msa0142230 | MtrunA17_Chr7g0240141 | 32.673 | 101 | 66 | 1 | 1 | 99 | 1 | 101 | 4.85e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0142230 | AT5G46050.1 | 61.897 | 580 | 209 | 4 | 6 | 576 | 6 | 582 | 0.0 | 719 |
| Msa0142230 | AT5G46040.1 | 60.348 | 575 | 216 | 4 | 6 | 571 | 6 | 577 | 0.0 | 682 |
| Msa0142230 | AT5G46050.2 | 60.042 | 473 | 177 | 4 | 113 | 576 | 1 | 470 | 0.0 | 559 |
| Msa0142230 | AT2G40460.1 | 48.571 | 560 | 270 | 5 | 10 | 560 | 7 | 557 | 0.0 | 536 |
| Msa0142230 | AT3G54140.1 | 42.708 | 576 | 311 | 6 | 1 | 564 | 1 | 569 | 6.90e-168 | 489 |
| Msa0142230 | AT3G54140.2 | 42.708 | 576 | 311 | 6 | 1 | 564 | 1 | 569 | 6.90e-168 | 489 |
| Msa0142230 | AT5G01180.2 | 41.901 | 568 | 313 | 5 | 10 | 565 | 8 | 570 | 1.39e-158 | 466 |
| Msa0142230 | AT5G01180.3 | 41.901 | 568 | 313 | 5 | 10 | 565 | 8 | 570 | 1.39e-158 | 466 |
| Msa0142230 | AT5G01180.1 | 41.901 | 568 | 313 | 5 | 10 | 565 | 8 | 570 | 1.39e-158 | 466 |
| Msa0142230 | AT2G02040.1 | 39.826 | 575 | 327 | 5 | 1 | 559 | 12 | 583 | 3.37e-158 | 465 |
| Msa0142230 | AT1G62200.1 | 40.917 | 545 | 316 | 2 | 12 | 551 | 37 | 580 | 4.12e-154 | 455 |
| Msa0142230 | AT1G62200.2 | 38.783 | 575 | 317 | 3 | 11 | 551 | 36 | 609 | 1.17e-147 | 439 |
| Msa0142230 | AT1G62200.3 | 38.783 | 575 | 317 | 3 | 11 | 551 | 50 | 623 | 2.63e-147 | 439 |
| Msa0142230 | AT3G53960.1 | 39.965 | 573 | 324 | 8 | 8 | 568 | 18 | 582 | 5.00e-144 | 429 |
| Msa0142230 | AT2G37900.1 | 39.201 | 551 | 322 | 6 | 8 | 553 | 19 | 561 | 8.72e-143 | 426 |
| Msa0142230 | AT2G02020.1 | 38.475 | 564 | 295 | 7 | 1 | 550 | 13 | 538 | 3.87e-139 | 415 |
| Msa0142230 | AT1G12110.1 | 38.600 | 557 | 327 | 5 | 17 | 560 | 17 | 571 | 2.37e-129 | 391 |
| Msa0142230 | AT3G54450.1 | 37.117 | 555 | 313 | 8 | 22 | 558 | 6 | 542 | 3.33e-129 | 390 |
| Msa0142230 | AT2G37900.2 | 39.630 | 487 | 281 | 6 | 72 | 553 | 4 | 482 | 9.42e-124 | 374 |
| Msa0142230 | AT1G32450.1 | 35.450 | 567 | 346 | 7 | 7 | 555 | 17 | 581 | 1.55e-121 | 372 |
| Msa0142230 | AT2G26690.1 | 36.964 | 560 | 332 | 5 | 8 | 555 | 5 | 555 | 2.40e-118 | 363 |
| Msa0142230 | AT1G72140.1 | 35.839 | 572 | 320 | 8 | 2 | 556 | 9 | 550 | 2.53e-118 | 362 |
| Msa0142230 | AT2G02020.2 | 35.106 | 564 | 293 | 9 | 1 | 550 | 13 | 517 | 4.04e-116 | 355 |
| Msa0142230 | AT1G22540.1 | 36.216 | 555 | 323 | 8 | 15 | 558 | 18 | 552 | 5.24e-116 | 356 |
| Msa0142230 | AT4G21680.1 | 34.744 | 567 | 340 | 7 | 11 | 555 | 12 | 570 | 1.29e-114 | 353 |
| Msa0142230 | AT1G68570.1 | 36.832 | 543 | 325 | 5 | 29 | 555 | 25 | 565 | 5.80e-113 | 349 |
| Msa0142230 | AT1G68570.2 | 37.170 | 530 | 315 | 5 | 42 | 555 | 8 | 535 | 1.70e-112 | 347 |
| Msa0142230 | AT1G22550.1 | 35.304 | 575 | 333 | 10 | 2 | 558 | 6 | 559 | 2.38e-112 | 347 |
| Msa0142230 | AT5G19640.1 | 34.186 | 547 | 338 | 8 | 28 | 566 | 60 | 592 | 2.57e-112 | 348 |
| Msa0142230 | AT2G26690.2 | 37.452 | 526 | 308 | 5 | 42 | 555 | 6 | 522 | 4.45e-111 | 343 |
| Msa0142230 | AT1G59740.1 | 33.155 | 561 | 370 | 4 | 9 | 564 | 23 | 583 | 3.35e-110 | 342 |
| Msa0142230 | AT2G26690.3 | 37.645 | 518 | 302 | 5 | 50 | 555 | 2 | 510 | 3.91e-109 | 337 |
| Msa0142230 | AT1G72130.1 | 34.168 | 559 | 322 | 9 | 6 | 556 | 11 | 531 | 1.21e-108 | 336 |
| Msa0142230 | AT3G21670.1 | 35.616 | 584 | 347 | 6 | 12 | 578 | 11 | 582 | 3.00e-108 | 337 |
| Msa0142230 | AT1G72125.1 | 35.816 | 564 | 331 | 9 | 8 | 558 | 11 | 556 | 6.34e-108 | 335 |
| Msa0142230 | AT1G22570.1 | 36.300 | 573 | 331 | 11 | 2 | 558 | 6 | 560 | 1.21e-107 | 335 |
| Msa0142230 | AT5G13400.1 | 33.916 | 572 | 360 | 7 | 6 | 559 | 41 | 612 | 2.10e-106 | 333 |
| Msa0142230 | AT1G33440.1 | 35.243 | 576 | 352 | 9 | 9 | 570 | 20 | 588 | 1.48e-105 | 330 |
| Msa0142230 | AT1G72120.1 | 35.993 | 564 | 326 | 10 | 8 | 558 | 11 | 552 | 6.60e-105 | 327 |
| Msa0142230 | AT1G69850.1 | 32.186 | 581 | 359 | 6 | 13 | 564 | 11 | 585 | 1.79e-103 | 324 |
| Msa0142230 | AT1G27040.1 | 33.037 | 563 | 364 | 4 | 1 | 555 | 1 | 558 | 2.92e-101 | 318 |
| Msa0142230 | AT1G69870.1 | 33.759 | 548 | 343 | 7 | 24 | 555 | 48 | 591 | 1.26e-100 | 318 |
| Msa0142230 | AT1G27040.2 | 32.916 | 559 | 362 | 4 | 5 | 555 | 1 | 554 | 2.95e-100 | 315 |
| Msa0142230 | AT1G22570.2 | 36.911 | 531 | 302 | 10 | 44 | 558 | 10 | 523 | 5.34e-100 | 313 |
| Msa0142230 | AT1G27040.3 | 32.950 | 522 | 337 | 4 | 42 | 555 | 10 | 526 | 7.95e-93 | 295 |
| Msa0142230 | AT1G18880.1 | 31.993 | 572 | 359 | 9 | 30 | 578 | 22 | 586 | 3.57e-92 | 295 |
| Msa0142230 | AT3G16180.1 | 30.915 | 579 | 370 | 9 | 25 | 581 | 21 | 591 | 3.83e-92 | 295 |
| Msa0142230 | AT5G28470.2 | 30.755 | 556 | 361 | 10 | 22 | 563 | 12 | 557 | 1.37e-89 | 287 |
| Msa0142230 | AT1G52190.1 | 29.242 | 554 | 363 | 10 | 25 | 555 | 19 | 566 | 1.57e-87 | 283 |
| Msa0142230 | AT5G28470.1 | 30.576 | 556 | 360 | 11 | 22 | 563 | 12 | 555 | 5.70e-87 | 281 |
| Msa0142230 | AT5G14940.1 | 30.000 | 560 | 347 | 9 | 25 | 560 | 5 | 543 | 7.20e-87 | 280 |
| Msa0142230 | AT5G62680.1 | 30.364 | 550 | 353 | 8 | 30 | 555 | 46 | 589 | 4.08e-84 | 275 |
| Msa0142230 | AT1G69860.1 | 31.919 | 542 | 353 | 7 | 25 | 558 | 16 | 549 | 4.15e-84 | 273 |
| Msa0142230 | AT1G27080.1 | 32.609 | 552 | 349 | 11 | 21 | 559 | 8 | 549 | 1.00e-83 | 273 |
| Msa0142230 | AT3G45700.1 | 32.156 | 538 | 340 | 11 | 26 | 558 | 15 | 532 | 4.20e-83 | 270 |
| Msa0142230 | AT3G25260.1 | 31.978 | 541 | 330 | 10 | 17 | 555 | 11 | 515 | 5.33e-83 | 269 |
| Msa0142230 | AT3G45710.1 | 30.880 | 557 | 360 | 9 | 11 | 558 | 4 | 544 | 5.29e-81 | 265 |
| Msa0142230 | AT3G47960.1 | 30.909 | 550 | 348 | 9 | 30 | 555 | 64 | 605 | 8.66e-81 | 266 |
| Msa0142230 | AT3G45650.1 | 30.688 | 567 | 355 | 9 | 6 | 558 | 1 | 543 | 2.63e-80 | 263 |
| Msa0142230 | AT5G62730.1 | 29.577 | 568 | 358 | 7 | 13 | 560 | 42 | 587 | 2.80e-80 | 264 |
| Msa0142230 | AT3G45680.1 | 31.550 | 542 | 344 | 11 | 26 | 558 | 19 | 542 | 6.50e-80 | 262 |
| Msa0142230 | AT1G72130.2 | 32.723 | 437 | 260 | 7 | 128 | 556 | 3 | 413 | 3.45e-78 | 253 |
| Msa0142230 | AT1G72130.3 | 32.723 | 437 | 260 | 7 | 128 | 556 | 3 | 413 | 3.45e-78 | 253 |
| Msa0142230 | AT3G01350.1 | 29.668 | 573 | 351 | 11 | 24 | 563 | 3 | 556 | 1.99e-77 | 256 |
| Msa0142230 | AT3G45660.1 | 31.115 | 556 | 343 | 10 | 18 | 558 | 12 | 542 | 1.33e-76 | 253 |
| Msa0142230 | AT3G45660.3 | 31.115 | 556 | 343 | 10 | 18 | 558 | 12 | 542 | 1.33e-76 | 253 |
| Msa0142230 | AT3G45660.2 | 30.935 | 556 | 344 | 10 | 18 | 558 | 33 | 563 | 2.64e-76 | 253 |
| Msa0142230 | AT3G45650.2 | 29.680 | 593 | 353 | 11 | 6 | 558 | 1 | 569 | 1.53e-75 | 251 |
| Msa0142230 | AT1G27080.2 | 32.752 | 516 | 324 | 11 | 57 | 559 | 2 | 507 | 1.62e-75 | 249 |
| Msa0142230 | AT5G62730.2 | 29.562 | 548 | 344 | 7 | 33 | 560 | 3 | 528 | 6.46e-75 | 248 |
| Msa0142230 | AT3G45720.1 | 30.127 | 551 | 357 | 11 | 17 | 558 | 9 | 540 | 1.25e-73 | 245 |
| Msa0142230 | AT3G25280.1 | 30.092 | 545 | 341 | 8 | 17 | 555 | 11 | 521 | 1.64e-71 | 239 |
| Msa0142230 | AT3G45690.1 | 30.669 | 538 | 313 | 16 | 26 | 558 | 17 | 499 | 2.67e-70 | 235 |
| Msa0142230 | AT5G11570.1 | 24.772 | 549 | 333 | 13 | 13 | 555 | 2 | 476 | 5.10e-47 | 172 |
| Msa0142230 | AT2G38100.2 | 23.938 | 518 | 342 | 13 | 55 | 555 | 2 | 484 | 4.21e-34 | 136 |
| Msa0142230 | AT2G38100.1 | 23.938 | 518 | 342 | 13 | 55 | 555 | 18 | 500 | 7.77e-34 | 135 |
| Msa0142230 | AT2G38100.3 | 23.938 | 518 | 342 | 13 | 55 | 555 | 24 | 506 | 1.11e-33 | 135 |
Find 117 sgRNAs with CRISPR-Local
Find 301 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAGGCTCTTCATGCTTTC+TGG | 0.007486 | 1_4:+1103479 | None:intergenic |
| TCCTTAGCTTAATCCCTATT+TGG | 0.099616 | 1_4:-1103922 | Msa0142230:CDS |
| TTTGAAAGAATTGCTTATTT+TGG | 0.103448 | 1_4:-1107863 | Msa0142230:CDS |
| ATCAATTTGTGTCTATAAAA+AGG | 0.166876 | 1_4:+1104654 | None:intergenic |
| CTAAGCTCATATAATTCTTT+AGG | 0.174512 | 1_4:+1104552 | None:intergenic |
| TTCTGCCTTTGTTTATTTAT+CGG | 0.205483 | 1_4:-1107678 | Msa0142230:intron |
| GCTACCACAATTTATACTTA+TGG | 0.212994 | 1_4:-1103558 | Msa0142230:CDS |
| ACATCCATTTCATTGCATTT+AGG | 0.225385 | 1_4:+1104990 | None:intergenic |
| GATGGAACTATTGATCTTAA+AGG | 0.228746 | 1_4:-1108593 | Msa0142230:CDS |
| TATAGACACAAATTGATTAA+AGG | 0.242682 | 1_4:-1104648 | Msa0142230:CDS |
| AGCAATGTAAGCACCTAATA+TGG | 0.250872 | 1_4:+1107736 | None:intergenic |
| ATAAATGTAGCAACCCAAAT+AGG | 0.258960 | 1_4:+1103908 | None:intergenic |
| CATTGCATTTAGGTGGCTTT+AGG | 0.269165 | 1_4:+1105000 | None:intergenic |
| ACCTTAGCCATGCTAATAAA+TGG | 0.270706 | 1_4:+1104621 | None:intergenic |
| AGTTCCATTGGCAACTTAAA+AGG | 0.275512 | 1_4:-1103824 | Msa0142230:CDS |
| CTACCACAATTTATACTTAT+GGG | 0.281391 | 1_4:-1103557 | Msa0142230:CDS |
| TAAGCTCATATAATTCTTTA+GGG | 0.288071 | 1_4:+1104553 | None:intergenic |
| AATATCAATCATCACATTCT+TGG | 0.288996 | 1_4:-1104685 | Msa0142230:CDS |
| AGCAAAATGAATATGCTTAA+TGG | 0.290175 | 1_4:+1103578 | None:intergenic |
| CCTTAGCTTAATCCCTATTT+GGG | 0.304195 | 1_4:-1103921 | Msa0142230:CDS |
| CTTCCAACAATGTCAACAAT+TGG | 0.331479 | 1_4:-1107781 | Msa0142230:CDS |
| AGAATTATATGAGCTTAGTT+TGG | 0.337781 | 1_4:-1104547 | Msa0142230:CDS |
| TGTCCACACATGCCTTATTA+AGG | 0.344783 | 1_4:+1104011 | None:intergenic |
| GGTTATGCTCTTCCAACTCT+TGG | 0.345107 | 1_4:-1104714 | Msa0142230:CDS |
| ATACAAAGAAAGGCAAATTC+AGG | 0.349133 | 1_4:-1104518 | Msa0142230:CDS |
| ATAGACACAAATTGATTAAA+GGG | 0.352216 | 1_4:-1104647 | Msa0142230:CDS |
| AGGTCATTGTGGCAGCTATA+AGG | 0.378262 | 1_4:-1104602 | Msa0142230:CDS |
| GATTAAGCTAAGGATTTGTT+TGG | 0.378471 | 1_4:+1103931 | None:intergenic |
| TGTAATACCTCTAGGATTCT+TGG | 0.388690 | 1_4:+1103706 | None:intergenic |
| ATGCTCATCTTGGACGCTAT+TGG | 0.389843 | 1_4:-1107712 | Msa0142230:CDS |
| GTACATGCAGTTAAACTTGC+TGG | 0.397071 | 1_4:+1103797 | None:intergenic |
| GCCACCTAAATGCAATGAAA+TGG | 0.401237 | 1_4:-1104994 | Msa0142230:CDS |
| TCATTAACTACTACTGGAAT+TGG | 0.402950 | 1_4:-1103446 | Msa0142230:CDS |
| AGCTTTCCAACCACCTGTCT+TGG | 0.404551 | 1_4:+1108553 | None:intergenic |
| TCATACTCATTAACTACTAC+TGG | 0.407310 | 1_4:-1103452 | Msa0142230:CDS |
| CATGTGCAGGTTCCTTAATA+AGG | 0.410062 | 1_4:-1104023 | Msa0142230:intron |
| TATAATTCTTTAGGGTCATC+AGG | 0.411938 | 1_4:+1104561 | None:intergenic |
| TACATTGCTGATGCTCATCT+TGG | 0.413401 | 1_4:-1107722 | Msa0142230:CDS |
| GATAATGTGGGTTGGAGTCT+TGG | 0.413650 | 1_4:-1104735 | Msa0142230:CDS |
| TAGGGTCAAAATCGTCAAAC+TGG | 0.418534 | 1_4:+1104853 | None:intergenic |
| AGCACCAATGGTTGAAATGT+TGG | 0.423208 | 1_4:+1104878 | None:intergenic |
| TAAATGTAGCAACCCAAATA+GGG | 0.425848 | 1_4:+1103909 | None:intergenic |
| AACCCAATTGTTGACATTGT+TGG | 0.426281 | 1_4:+1107778 | None:intergenic |
| GCACCAATGGTTGAAATGTT+GGG | 0.430608 | 1_4:+1104879 | None:intergenic |
| AAAGCTTGCTCATTTCTTGT+TGG | 0.433680 | 1_4:-1108536 | Msa0142230:intron |
| TACATTATAGCAGTGGGAAC+AGG | 0.437007 | 1_4:-1104912 | Msa0142230:CDS |
| TTAAGCTCTCATTCTTGAAC+TGG | 0.438372 | 1_4:-1104818 | Msa0142230:CDS |
| GCAATGGAAGAAGGCATGAT+TGG | 0.445717 | 1_4:-1108632 | Msa0142230:CDS |
| CATTTAGGTGGCTTTAGGCT+TGG | 0.447260 | 1_4:+1105005 | None:intergenic |
| ACCCTACACTCATTCTTTGA+AGG | 0.448501 | 1_4:+1103681 | None:intergenic |
| TTATACTACTCTTTGATGAA+TGG | 0.448798 | 1_4:-1103145 | Msa0142230:three_prime_UTR |
| AAGTCTATGTCTTTCAATCA+TGG | 0.461265 | 1_4:+1103625 | None:intergenic |
| AATGGTTGAAATGTTGGGTT+TGG | 0.467028 | 1_4:+1104884 | None:intergenic |
| AGAGTTAGAAACTTCAGCTC+TGG | 0.470177 | 1_4:+1103244 | None:intergenic |
| TTCCAACAATGTCAACAATT+GGG | 0.470599 | 1_4:-1107780 | Msa0142230:CDS |
| ACTACTCTTTGATGAATGGC+GGG | 0.473874 | 1_4:-1103141 | Msa0142230:three_prime_UTR |
| GCAATGTAAGCACCTAATAT+GGG | 0.476307 | 1_4:+1107737 | None:intergenic |
| GGAAATGAGTACACAAAAGA+TGG | 0.476556 | 1_4:-1108611 | Msa0142230:CDS |
| TTGGAAGAGTATACAAAGAA+AGG | 0.482322 | 1_4:-1104528 | Msa0142230:CDS |
| TAGGTGGCTTTAGGCTTGGT+AGG | 0.485426 | 1_4:+1105009 | None:intergenic |
| AAACCCAACATTTCAACCAT+TGG | 0.488482 | 1_4:-1104882 | Msa0142230:CDS |
| AATATTATGGCAATGGAAGA+AGG | 0.492661 | 1_4:-1108641 | None:intergenic |
| TCCATTTATTAGCATGGCTA+AGG | 0.503717 | 1_4:-1104622 | Msa0142230:CDS |
| TGAAGGAGTGTAATACCTCT+AGG | 0.507089 | 1_4:+1103698 | None:intergenic |
| AGCTCTCATTCTTGAACTGG+TGG | 0.510746 | 1_4:-1104815 | Msa0142230:CDS |
| AGGGAGTCCATTTATTAGCA+TGG | 0.513040 | 1_4:-1104628 | Msa0142230:CDS |
| CCAGAAAGCATGAAGAGCCT+TGG | 0.517929 | 1_4:-1103479 | Msa0142230:CDS |
| GTCAAACTGGTCAGCACCAA+TGG | 0.520660 | 1_4:+1104866 | None:intergenic |
| ATTTGAGCAATCATTGCACT+TGG | 0.524066 | 1_4:+1103884 | None:intergenic |
| CCCAAATAGGGATTAAGCTA+AGG | 0.524217 | 1_4:+1103921 | None:intergenic |
| AACAATGTCAACAATTGGGT+TGG | 0.530864 | 1_4:-1107776 | Msa0142230:CDS |
| TCAATCATCACATTCTTGGC+AGG | 0.532239 | 1_4:-1104681 | Msa0142230:CDS |
| TCCATTTCATTGCATTTAGG+TGG | 0.533894 | 1_4:+1104993 | None:intergenic |
| AGTTTACATACAAGATAATG+TGG | 0.535856 | 1_4:-1104748 | Msa0142230:CDS |
| GTTCAAGTACTAGTAATGAA+TGG | 0.536165 | 1_4:-1103985 | Msa0142230:CDS |
| ACAATTTATACTTATGGGAG+TGG | 0.538565 | 1_4:-1103552 | Msa0142230:CDS |
| TCCTTCAAAGAATGAGTGTA+GGG | 0.550595 | 1_4:-1103682 | Msa0142230:CDS |
| TACTACTCTTTGATGAATGG+CGG | 0.556611 | 1_4:-1103142 | Msa0142230:three_prime_UTR |
| ACTACTCTTAACAGTTCCAT+TGG | 0.557087 | 1_4:-1103836 | Msa0142230:CDS |
| AGGTGGCTTTAGGCTTGGTA+GGG | 0.557140 | 1_4:+1105010 | None:intergenic |
| ACTGAGAAACATGGTGGTCG+AGG | 0.558387 | 1_4:-1103380 | Msa0142230:CDS |
| ATTATAGCAGTGGGAACAGG+TGG | 0.564517 | 1_4:-1104909 | Msa0142230:CDS |
| GATATTGCAAGTCCAAGAGT+TGG | 0.565057 | 1_4:+1104702 | None:intergenic |
| CAACTATCATTATCACTATG+TGG | 0.583350 | 1_4:+1103651 | None:intergenic |
| AGAAACATGGTGGTCGAGGG+TGG | 0.584691 | 1_4:-1103376 | Msa0142230:CDS |
| TATGTGTCTACTTACACTAT+CGG | 0.587379 | 1_4:-1105036 | Msa0142230:CDS |
| TCATGTCTACTGCAGTGTAT+GGG | 0.587588 | 1_4:-1107889 | Msa0142230:intron |
| GATTATGTAAGTGATAATCA+TGG | 0.591566 | 1_4:+1103766 | None:intergenic |
| TTCCCACTGCTATAATGTAG+AGG | 0.593891 | 1_4:+1104916 | None:intergenic |
| AATGGATGTTACAAAATGCA+AGG | 0.601334 | 1_4:-1104976 | Msa0142230:CDS |
| AATAAGGCATGTGTGGACAC+TGG | 0.601730 | 1_4:-1104007 | Msa0142230:CDS |
| GTTCCTTAATAAGGCATGTG+TGG | 0.604135 | 1_4:-1104014 | Msa0142230:CDS |
| GCCCTCTACATTATAGCAGT+GGG | 0.606132 | 1_4:-1104918 | Msa0142230:CDS |
| ACATACAAGATAATGTGGGT+TGG | 0.606286 | 1_4:-1104743 | Msa0142230:CDS |
| TGCCCTCTACATTATAGCAG+TGG | 0.606625 | 1_4:-1104919 | Msa0142230:CDS |
| TCAGATCCAAGACAGGTGGT+TGG | 0.608354 | 1_4:-1108559 | Msa0142230:CDS |
| TCTGTTCTCAGATCCAAGAC+AGG | 0.609180 | 1_4:-1108566 | Msa0142230:CDS |
| ATGCACAATAACACAAGTAG+AGG | 0.609944 | 1_4:-1103957 | Msa0142230:CDS |
| TTAATGAGTATGATGTTCCA+AGG | 0.610874 | 1_4:+1103462 | None:intergenic |
| GAACACAAATAGTGTTTGTG+TGG | 0.618107 | 1_4:+1104947 | None:intergenic |
| TGGAAGAGATGACAGTGCCT+TGG | 0.622263 | 1_4:+1107798 | None:intergenic |
| TGAAAGACATAGACTTAGTG+TGG | 0.622321 | 1_4:-1103618 | Msa0142230:CDS |
| TCCCACTGCTATAATGTAGA+GGG | 0.626967 | 1_4:+1104917 | None:intergenic |
| CTACTCTTTGATGAATGGCG+GGG | 0.628050 | 1_4:-1103140 | Msa0142230:three_prime_UTR |
| TAGCATGGCTAAGGTCATTG+TGG | 0.628074 | 1_4:-1104613 | Msa0142230:CDS |
| CTCCTTCAAAGAATGAGTGT+AGG | 0.632299 | 1_4:-1103683 | Msa0142230:CDS |
| CTGAGAAACATGGTGGTCGA+GGG | 0.632880 | 1_4:-1103379 | Msa0142230:CDS |
| GTTTACATACAAGATAATGT+GGG | 0.647812 | 1_4:-1104747 | Msa0142230:CDS |
| ACTCCCATAAGTATAAATTG+TGG | 0.648143 | 1_4:+1103554 | None:intergenic |
| TCACATGTCACTGAGAAACA+TGG | 0.664134 | 1_4:-1103389 | Msa0142230:CDS |
| ACATACCGATAAATAAACAA+AGG | 0.666237 | 1_4:+1107673 | None:intergenic |
| GTTCTCAGATCCAAGACAGG+TGG | 0.678500 | 1_4:-1108563 | Msa0142230:CDS |
| TTGACAAAGAAGCTTCACCA+AGG | 0.708677 | 1_4:-1107815 | Msa0142230:CDS |
| CATGCAGTTAAACTTGCTGG+AGG | 0.715363 | 1_4:+1103800 | None:intergenic |
| AAGTTGACCAAGAATCCTAG+AGG | 0.716009 | 1_4:-1103713 | Msa0142230:CDS |
| TTATAGCAGTGGGAACAGGT+GGG | 0.731594 | 1_4:-1104908 | Msa0142230:CDS |
| CATGTCACTGAGAAACATGG+TGG | 0.747015 | 1_4:-1103386 | Msa0142230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAATTTTAATATATTAA+TGG | - | chr1_4:1104529-1104548 | Msa0142230:CDS | 0.0% |
| !!! | ATAATAATAAATTTAATTTA+TGG | + | chr1_4:1106084-1106103 | None:intergenic | 0.0% |
| !!! | AAAATCTTTTTTTCTTTATA+CGG | + | chr1_4:1104279-1104298 | None:intergenic | 10.0% |
| !!! | CTATATTTTTAAAAGAAAAA+AGG | - | chr1_4:1104342-1104361 | Msa0142230:intron | 10.0% |
| !! | AAAATAATAATGTTAAAGAT+TGG | + | chr1_4:1105413-1105432 | None:intergenic | 10.0% |
| !! | CAAAAAATAATGTTAAAAAT+TGG | + | chr1_4:1105479-1105498 | None:intergenic | 10.0% |
| !! | TTATTATTCAAAATTGAAAT+TGG | + | chr1_4:1106566-1106585 | None:intergenic | 10.0% |
| !!! | TTATAATAATTCATTAGTTT+CGG | - | chr1_4:1106682-1106701 | Msa0142230:intron | 10.0% |
| !!! | GAATCAATATTTTAAAATAA+GGG | + | chr1_4:1107699-1107718 | None:intergenic | 10.0% |
| !!! | AGAATCAATATTTTAAAATA+AGG | + | chr1_4:1107700-1107719 | None:intergenic | 10.0% |
| !! | AATAATTGAACAATATATAC+AGG | + | chr1_4:1103334-1103353 | None:intergenic | 15.0% |
| !! | AAAATATGTTAATTGTACTA+AGG | + | chr1_4:1103357-1103376 | None:intergenic | 15.0% |
| !! | TAAAGATTATAAATAATCCA+CGG | + | chr1_4:1103476-1103495 | None:intergenic | 15.0% |
| !! | ATAAAAAATAAGAGACATTA+TGG | - | chr1_4:1103498-1103517 | Msa0142230:CDS | 15.0% |
| !!! | AAGATAAAATTTTAGATTAG+AGG | + | chr1_4:1103679-1103698 | None:intergenic | 15.0% |
| !! | AATTAACAATTCAATTCAAT+GGG | + | chr1_4:1103830-1103849 | None:intergenic | 15.0% |
| !! | AAATTAACAATTCAATTCAA+TGG | + | chr1_4:1103831-1103850 | None:intergenic | 15.0% |
| !!! | AAATCTTTTTTTCTTTATAC+GGG | + | chr1_4:1104278-1104297 | None:intergenic | 15.0% |
| !! | TTATAAACAAAATATTGTCA+AGG | - | chr1_4:1104571-1104590 | Msa0142230:CDS | 15.0% |
| !!! | TTTATCTTAATTTTATATGC+AGG | + | chr1_4:1104639-1104658 | None:intergenic | 15.0% |
| !! | ATTTAAGAATATGTTTGATA+TGG | + | chr1_4:1105112-1105131 | None:intergenic | 15.0% |
| !!! | CATATTTTAAAGGTAAAAAA+AGG | + | chr1_4:1105210-1105229 | None:intergenic | 15.0% |
| !!! | TTTTTTACCTTTAAAATATG+TGG | - | chr1_4:1105210-1105229 | Msa0142230:intron | 15.0% |
| !!! | AAATTCTCTAAAAAAAGATT+AGG | + | chr1_4:1105385-1105404 | None:intergenic | 15.0% |
| !!! | TGTTACTAATATTTTTTTAG+AGG | - | chr1_4:1105444-1105463 | Msa0142230:intron | 15.0% |
| !! | CAAAAAATATTGTTAAAGAT+TGG | + | chr1_4:1105542-1105561 | None:intergenic | 15.0% |
| !!! | TTTGTTACTATTTTTTTTAG+AGG | - | chr1_4:1105594-1105613 | Msa0142230:intron | 15.0% |
| !! | CAAAAAATATTGTTAAAGAT+TGG | + | chr1_4:1105542-1105561 | None:intergenic | 15.0% |
| !!! | GTTACTAATATTTTTTTTAG+AGG | - | chr1_4:1105658-1105677 | Msa0142230:intron | 15.0% |
| !! | CAAAAAATAATGTTAAAGAT+TGG | + | chr1_4:1105693-1105712 | None:intergenic | 15.0% |
| !! | GTGAAAGTAATAAAATAATA+TGG | - | chr1_4:1105791-1105810 | Msa0142230:intron | 15.0% |
| !! | ATAGATGTACAATATAAAAT+CGG | - | chr1_4:1105885-1105904 | Msa0142230:intron | 15.0% |
| !! | TTCACTAGAAAAATGTTATT+CGG | - | chr1_4:1103276-1103295 | Msa0142230:CDS | 20.0% |
| !! | TTTACCAACAAAGAAAATAA+TGG | - | chr1_4:1103697-1103716 | Msa0142230:CDS | 20.0% |
| !! | AAACTTATCAACAACATATA+AGG | + | chr1_4:1103785-1103804 | None:intergenic | 20.0% |
| !!! | TTTGAAAGAATTGCTTATTT+TGG | - | chr1_4:1103890-1103909 | Msa0142230:CDS | 20.0% |
| !!! | CAAAAGTTCTAATTAAAGAA+GGG | + | chr1_4:1104844-1104863 | None:intergenic | 20.0% |
| !!! | ACAAAAGTTCTAATTAAAGA+AGG | + | chr1_4:1104845-1104864 | None:intergenic | 20.0% |
| !! | TTAAAGATAAATGTGAGTTT+AGG | + | chr1_4:1105036-1105055 | None:intergenic | 20.0% |
| !!! | TCTTACTAATCTTTTTTTAG+AGG | - | chr1_4:1105507-1105526 | Msa0142230:intron | 20.0% |
| !!! | TTCACGTGTTATTTTATAAT+TGG | - | chr1_4:1106014-1106033 | Msa0142230:intron | 20.0% |
| !!! | TTAAAGATTAAGGGTATTTT+TGG | - | chr1_4:1106142-1106161 | Msa0142230:intron | 20.0% |
| !! | GAATAATAACAAACAATGAA+AGG | - | chr1_4:1106577-1106596 | Msa0142230:intron | 20.0% |
| !! | ATCAATTTGTGTCTATAAAA+AGG | + | chr1_4:1107102-1107121 | None:intergenic | 20.0% |
| !! | TATAGACACAAATTGATTAA+AGG | - | chr1_4:1107105-1107124 | Msa0142230:intron | 20.0% |
| !! | ATAGACACAAATTGATTAAA+GGG | - | chr1_4:1107106-1107125 | Msa0142230:intron | 20.0% |
| !! | TAAGCTCATATAATTCTTTA+GGG | + | chr1_4:1107203-1107222 | None:intergenic | 20.0% |
| !!! | AACAATTTCGGCATTTTTTT+CGG | + | chr1_4:1103432-1103451 | None:intergenic | 25.0% |
| ! | AAAAAAATGCCGAAATTGTT+TGG | - | chr1_4:1103432-1103451 | Msa0142230:CDS | 25.0% |
| ! | TTACACTCTATAAGAGTAAA+TGG | + | chr1_4:1103597-1103616 | None:intergenic | 25.0% |
| !! | ATGACCATTATTTTCTTTGT+TGG | + | chr1_4:1103704-1103723 | None:intergenic | 25.0% |
| ! | ATTCAATTCAATGGGTAATA+TGG | + | chr1_4:1103822-1103841 | None:intergenic | 25.0% |
| !! | TTCTGCCTTTGTTTATTTAT+CGG | - | chr1_4:1104075-1104094 | Msa0142230:intron | 25.0% |
| ! | ACATACCGATAAATAAACAA+AGG | + | chr1_4:1104083-1104102 | None:intergenic | 25.0% |
| ! | ATTAAAGAAGGGAAAATAGA+AGG | + | chr1_4:1104833-1104852 | None:intergenic | 25.0% |
| !!! | TTATATGTAGCTTTATCAAG+AGG | + | chr1_4:1104884-1104903 | None:intergenic | 25.0% |
| ! | TTACCATAAATAAGTCACAA+GGG | + | chr1_4:1104960-1104979 | None:intergenic | 25.0% |
| ! | ATTACCATAAATAAGTCACA+AGG | + | chr1_4:1104961-1104980 | None:intergenic | 25.0% |
| ! | AATAGCAAAACTTAGTCTAA+CGG | - | chr1_4:1104978-1104997 | Msa0142230:CDS | 25.0% |
| ! | TCTATGTTTAACAACATCAA+AGG | - | chr1_4:1105180-1105199 | Msa0142230:intron | 25.0% |
| !!! | TTTACCTTTAAAATATGTGG+TGG | - | chr1_4:1105213-1105232 | Msa0142230:intron | 25.0% |
| !!! | TTACCTTTAAAATATGTGGT+GGG | - | chr1_4:1105214-1105233 | Msa0142230:intron | 25.0% |
| ! | TACTCATAACTTATATCAAC+AGG | + | chr1_4:1105271-1105290 | None:intergenic | 25.0% |
| !! | GTTTGTTACAATTGATCAAA+GGG | - | chr1_4:1105718-1105737 | Msa0142230:intron | 25.0% |
| !!! | TATGGAAATACTGATTTTTG+TGG | - | chr1_4:1105809-1105828 | Msa0142230:intron | 25.0% |
| !! | AATCTTTGTTGATTGTATTG+AGG | - | chr1_4:1105854-1105873 | Msa0142230:intron | 25.0% |
| !! | ATCTTTGTTGATTGTATTGA+GGG | - | chr1_4:1105855-1105874 | Msa0142230:intron | 25.0% |
| !!! | ATTTTTTTGAGTTTGATCTG+TGG | - | chr1_4:1105944-1105963 | Msa0142230:intron | 25.0% |
| !! | CTATTTGTTACATGTGTTAT+TGG | - | chr1_4:1106104-1106123 | Msa0142230:intron | 25.0% |
| !! | TTTTATGACAAAATGAGATG+TGG | + | chr1_4:1106347-1106366 | None:intergenic | 25.0% |
| ! | GTCTTATATCCTAACAATAA+AGG | + | chr1_4:1106440-1106459 | None:intergenic | 25.0% |
| !! | TGTTAGGATATAAGACTTTT+TGG | - | chr1_4:1106444-1106463 | Msa0142230:intron | 25.0% |
| ! | TAAAACCTATTTGATACATG+TGG | - | chr1_4:1106488-1106507 | Msa0142230:intron | 25.0% |
| ! | AAATACCACATGTATCAAAT+AGG | + | chr1_4:1106496-1106515 | None:intergenic | 25.0% |
| ! | TAACAAACAATGAAAGGATT+AGG | - | chr1_4:1106583-1106602 | Msa0142230:intron | 25.0% |
| ! | TTGCTTAGTAATATTTGACA+AGG | - | chr1_4:1106657-1106676 | Msa0142230:intron | 25.0% |
| !! | AATTCATTAGTTTCGGTTAT+TGG | - | chr1_4:1106689-1106708 | Msa0142230:intron | 25.0% |
| !! | GCTTAAGTGATTTTTCTTTA+GGG | + | chr1_4:1106921-1106940 | None:intergenic | 25.0% |
| !! | AGCTTAAGTGATTTTTCTTT+AGG | + | chr1_4:1106922-1106941 | None:intergenic | 25.0% |
| ! | AGTTTACATACAAGATAATG+TGG | - | chr1_4:1107005-1107024 | Msa0142230:intron | 25.0% |
| ! | GTTTACATACAAGATAATGT+GGG | - | chr1_4:1107006-1107025 | Msa0142230:intron | 25.0% |
| ! | AATATCAATCATCACATTCT+TGG | - | chr1_4:1107068-1107087 | Msa0142230:intron | 25.0% |
| ! | CTAAGCTCATATAATTCTTT+AGG | + | chr1_4:1107204-1107223 | None:intergenic | 25.0% |
| ! | AGAATTATATGAGCTTAGTT+TGG | - | chr1_4:1107206-1107225 | Msa0142230:intron | 25.0% |
| !!! | CTTGATCATTTGATTTTACA+AGG | - | chr1_4:1107308-1107327 | Msa0142230:intron | 25.0% |
| !!! | AAATGGTAGATGTACTTTTT+TGG | + | chr1_4:1107494-1107513 | None:intergenic | 25.0% |
| ! | ATTTAGTGTAATCAAGTATC+AGG | + | chr1_4:1107543-1107562 | None:intergenic | 25.0% |
| !! | AATACCCTTTTCATAAAACA+AGG | - | chr1_4:1107893-1107912 | Msa0142230:intron | 25.0% |
| !!! | AGTTCCTTGTTTTATGAAAA+GGG | + | chr1_4:1107900-1107919 | None:intergenic | 25.0% |
| !!! | TAGTTCCTTGTTTTATGAAA+AGG | + | chr1_4:1107901-1107920 | None:intergenic | 25.0% |
| ! | GATTATGTAAGTGATAATCA+TGG | + | chr1_4:1107990-1108009 | None:intergenic | 25.0% |
| !!! | TAATGGAACTTCATGTTTTT+TGG | + | chr1_4:1108161-1108180 | None:intergenic | 25.0% |
| ! | AGCAAAATGAATATGCTTAA+TGG | + | chr1_4:1108178-1108197 | None:intergenic | 25.0% |
| ! | CTACCACAATTTATACTTAT+GGG | - | chr1_4:1108196-1108215 | Msa0142230:intron | 25.0% |
| !! | TGATTACTACTATGCATTTT+TGG | - | chr1_4:1108429-1108448 | Msa0142230:intron | 25.0% |
| ! | TTATACTACTCTTTGATGAA+TGG | - | chr1_4:1108608-1108627 | Msa0142230:CDS | 25.0% |
| GATGGAACTATTGATCTTAA+AGG | - | chr1_4:1103160-1103179 | Msa0142230:three_prime_UTR | 30.0% | |
| AGGTAGATTAAATTGTACTG+TGG | + | chr1_4:1103314-1103333 | None:intergenic | 30.0% | |
| ATTTGTAAGCAAAAACCTGA+AGG | - | chr1_4:1103550-1103569 | Msa0142230:CDS | 30.0% | |
| TTGATCATCTTAAGCAAAGT+TGG | + | chr1_4:1103740-1103759 | None:intergenic | 30.0% | |
| TTCCAACAATGTCAACAATT+GGG | - | chr1_4:1103973-1103992 | Msa0142230:CDS | 30.0% | |
| ! | GTTTTTATGACTCCCATATT+AGG | - | chr1_4:1104004-1104023 | Msa0142230:CDS | 30.0% |
| AAAGGTCCTCTTATAAAGAT+CGG | + | chr1_4:1104177-1104196 | None:intergenic | 30.0% | |
| ATATTGAAACCCTAAACCAA+TGG | - | chr1_4:1104242-1104261 | Msa0142230:intron | 30.0% | |
| TTATTAACTAGCTGAAAGAC+AGG | - | chr1_4:1104417-1104436 | Msa0142230:intron | 30.0% | |
| ATAGCAAAACTTAGTCTAAC+GGG | - | chr1_4:1104979-1104998 | Msa0142230:CDS | 30.0% | |
| ! | TGTTTTCTACTAAGCACAAA+TGG | - | chr1_4:1105006-1105025 | Msa0142230:CDS | 30.0% |
| TTTGATATGGAAATCCTAAC+AGG | + | chr1_4:1105099-1105118 | None:intergenic | 30.0% | |
| CTAGATATGACATGTGTAAT+GGG | + | chr1_4:1105158-1105177 | None:intergenic | 30.0% | |
| CATTACACATGTCATATCTA+GGG | - | chr1_4:1105157-1105176 | Msa0142230:intron | 30.0% | |
| !! | TATCCCACCACATATTTTAA+AGG | + | chr1_4:1105220-1105239 | None:intergenic | 30.0% |
| TTCCTTGAACAATTGAGTTT+AGG | - | chr1_4:1105241-1105260 | Msa0142230:intron | 30.0% | |
| TTCCTAAACTCAATTGTTCA+AGG | + | chr1_4:1105246-1105265 | None:intergenic | 30.0% | |
| GAGAAGAACATAATTTGAAG+GGG | + | chr1_4:1105295-1105314 | None:intergenic | 30.0% | |
| GGAGAAGAACATAATTTGAA+GGG | + | chr1_4:1105296-1105315 | None:intergenic | 30.0% | |
| AGGAGAAGAACATAATTTGA+AGG | + | chr1_4:1105297-1105316 | None:intergenic | 30.0% | |
| TTCAAATTATGTTCTTCTCC+TGG | - | chr1_4:1105296-1105315 | Msa0142230:intron | 30.0% | |
| TTAATTAGCAATCAGTTTCC+AGG | + | chr1_4:1105317-1105336 | None:intergenic | 30.0% | |
| ! | CGTTTGTTACAATTGATCAA+AGG | - | chr1_4:1105717-1105736 | Msa0142230:intron | 30.0% |
| TTACAATTGATCAAAGGGTA+AGG | - | chr1_4:1105723-1105742 | Msa0142230:intron | 30.0% | |
| GGAAGAGATATGAAAATACT+TGG | - | chr1_4:1105830-1105849 | Msa0142230:intron | 30.0% | |
| ! | TCTTTGTTGATTGTATTGAG+GGG | - | chr1_4:1105856-1105875 | Msa0142230:intron | 30.0% |
| TATGTGTCTACTTACACTAT+CGG | - | chr1_4:1106717-1106736 | Msa0142230:intron | 30.0% | |
| ACATCCATTTCATTGCATTT+AGG | + | chr1_4:1106766-1106785 | None:intergenic | 30.0% | |
| AATGGATGTTACAAAATGCA+AGG | - | chr1_4:1106777-1106796 | Msa0142230:intron | 30.0% | |
| !! | TATAATTCTTTAGGGTCATC+AGG | + | chr1_4:1107195-1107214 | None:intergenic | 30.0% |
| ! | TTGGAAGAGTATACAAAGAA+AGG | - | chr1_4:1107225-1107244 | Msa0142230:intron | 30.0% |
| ATACAAAGAAAGGCAAATTC+AGG | - | chr1_4:1107235-1107254 | Msa0142230:intron | 30.0% | |
| CAACAAACATGAATTTCACT+CGG | + | chr1_4:1107378-1107397 | None:intergenic | 30.0% | |
| ! | TTTGTTGCGTCACTTTAATA+TGG | - | chr1_4:1107391-1107410 | Msa0142230:intron | 30.0% |
| ! | TTGTTGCGTCACTTTAATAT+GGG | - | chr1_4:1107392-1107411 | Msa0142230:intron | 30.0% |
| ACTCAAAATGAAATTCATGC+AGG | + | chr1_4:1107440-1107459 | None:intergenic | 30.0% | |
| GTTCAAGTACTAGTAATGAA+TGG | - | chr1_4:1107768-1107787 | Msa0142230:CDS | 30.0% | |
| ! | GATTAAGCTAAGGATTTGTT+TGG | + | chr1_4:1107825-1107844 | None:intergenic | 30.0% |
| TAAATGTAGCAACCCAAATA+GGG | + | chr1_4:1107847-1107866 | None:intergenic | 30.0% | |
| ATAAATGTAGCAACCCAAAT+AGG | + | chr1_4:1107848-1107867 | None:intergenic | 30.0% | |
| AAGTCTATGTCTTTCAATCA+TGG | + | chr1_4:1108131-1108150 | None:intergenic | 30.0% | |
| GCTACCACAATTTATACTTA+TGG | - | chr1_4:1108195-1108214 | Msa0142230:intron | 30.0% | |
| ACTCCCATAAGTATAAATTG+TGG | + | chr1_4:1108202-1108221 | None:intergenic | 30.0% | |
| ACAATTTATACTTATGGGAG+TGG | - | chr1_4:1108201-1108220 | Msa0142230:intron | 30.0% | |
| TTAATGAGTATGATGTTCCA+AGG | + | chr1_4:1108294-1108313 | None:intergenic | 30.0% | |
| TCATACTCATTAACTACTAC+TGG | - | chr1_4:1108301-1108320 | Msa0142230:intron | 30.0% | |
| TCATTAACTACTACTGGAAT+TGG | - | chr1_4:1108307-1108326 | Msa0142230:intron | 30.0% | |
| GGAAATGAGTACACAAAAGA+TGG | - | chr1_4:1103142-1103161 | Msa0142230:three_prime_UTR | 35.0% | |
| ! | AAAGCTTGCTCATTTCTTGT+TGG | - | chr1_4:1103217-1103236 | Msa0142230:CDS | 35.0% |
| TTTCTCTCTCACACACTTTA+TGG | - | chr1_4:1103245-1103264 | Msa0142230:CDS | 35.0% | |
| !!! | GCATTTTTTTCGGTTGAGTT+AGG | + | chr1_4:1103422-1103441 | None:intergenic | 35.0% |
| AAATGCCGAAATTGTTTGGT+CGG | - | chr1_4:1103436-1103455 | Msa0142230:CDS | 35.0% | |
| TATGACCGACCAAACAATTT+CGG | + | chr1_4:1103444-1103463 | None:intergenic | 35.0% | |
| TATTCTCAAATGTCTCCTTC+AGG | + | chr1_4:1103568-1103587 | None:intergenic | 35.0% | |
| ATGATCAAAGCATGCTCATT+AGG | - | chr1_4:1103752-1103771 | Msa0142230:CDS | 35.0% | |
| CTTCCAACAATGTCAACAAT+TGG | - | chr1_4:1103972-1103991 | Msa0142230:CDS | 35.0% | |
| AACCCAATTGTTGACATTGT+TGG | + | chr1_4:1103978-1103997 | None:intergenic | 35.0% | |
| AACAATGTCAACAATTGGGT+TGG | - | chr1_4:1103977-1103996 | Msa0142230:CDS | 35.0% | |
| GCAATGTAAGCACCTAATAT+GGG | + | chr1_4:1104019-1104038 | None:intergenic | 35.0% | |
| AGCAATGTAAGCACCTAATA+TGG | + | chr1_4:1104020-1104039 | None:intergenic | 35.0% | |
| CCTAGATATGACATGTGTAA+TGG | + | chr1_4:1105159-1105178 | None:intergenic | 35.0% | |
| CCATTACACATGTCATATCT+AGG | - | chr1_4:1105156-1105175 | Msa0142230:intron | 35.0% | |
| TGATCTGTGGTTAATAACAG+AGG | - | chr1_4:1105957-1105976 | Msa0142230:intron | 35.0% | |
| GATCTGTGGTTAATAACAGA+GGG | - | chr1_4:1105958-1105977 | Msa0142230:intron | 35.0% | |
| TTAATAACAGAGGGTTAACG+AGG | - | chr1_4:1105967-1105986 | Msa0142230:intron | 35.0% | |
| GTGTAGTTAGAATTTAGACG+TGG | + | chr1_4:1106397-1106416 | None:intergenic | 35.0% | |
| ACACTATATTGTGTGCATGT+TGG | - | chr1_4:1106413-1106432 | Msa0142230:intron | 35.0% | |
| CATGTTGGTCCTTTATTGTT+AGG | - | chr1_4:1106428-1106447 | Msa0142230:intron | 35.0% | |
| ! | ATGAAAGGATTAGGAGTACA+AGG | - | chr1_4:1106592-1106611 | Msa0142230:intron | 35.0% |
| ! | ATTAGTTTCGGTTATTGGCA+GGG | - | chr1_4:1106694-1106713 | Msa0142230:intron | 35.0% |
| TCCATTTCATTGCATTTAGG+TGG | + | chr1_4:1106763-1106782 | None:intergenic | 35.0% | |
| GAACACAAATAGTGTTTGTG+TGG | + | chr1_4:1106809-1106828 | None:intergenic | 35.0% | |
| AATGGTTGAAATGTTGGGTT+TGG | + | chr1_4:1106872-1106891 | None:intergenic | 35.0% | |
| AAACCCAACATTTCAACCAT+TGG | - | chr1_4:1106871-1106890 | Msa0142230:intron | 35.0% | |
| TTAAGCTCTCATTCTTGAAC+TGG | - | chr1_4:1106935-1106954 | Msa0142230:intron | 35.0% | |
| ! | TGGATGTCTTGCATTGTTTT+TGG | - | chr1_4:1106958-1106977 | Msa0142230:intron | 35.0% |
| !! | GGATGTCTTGCATTGTTTTT+GGG | - | chr1_4:1106959-1106978 | Msa0142230:intron | 35.0% |
| ACATACAAGATAATGTGGGT+TGG | - | chr1_4:1107010-1107029 | Msa0142230:intron | 35.0% | |
| TCCATTTATTAGCATGGCTA+AGG | - | chr1_4:1107131-1107150 | Msa0142230:intron | 35.0% | |
| ACCTTAGCCATGCTAATAAA+TGG | + | chr1_4:1107135-1107154 | None:intergenic | 35.0% | |
| TGATCAAGTAAATGCGAGTA+TGG | + | chr1_4:1107296-1107315 | None:intergenic | 35.0% | |
| ! | TGTTGCGTCACTTTAATATG+GGG | - | chr1_4:1107393-1107412 | Msa0142230:intron | 35.0% |
| ! | AGTACATCTACCATTTTGCT+TGG | - | chr1_4:1107498-1107517 | Msa0142230:intron | 35.0% |
| ! | TCTTGTTTGTATACATGTGC+AGG | - | chr1_4:1107717-1107736 | Msa0142230:CDS | 35.0% |
| ATGCACAATAACACAAGTAG+AGG | - | chr1_4:1107796-1107815 | Msa0142230:CDS | 35.0% | |
| TCCTTAGCTTAATCCCTATT+TGG | - | chr1_4:1107831-1107850 | Msa0142230:CDS | 35.0% | |
| CCTTAGCTTAATCCCTATTT+GGG | - | chr1_4:1107832-1107851 | Msa0142230:CDS | 35.0% | |
| ATTTGAGCAATCATTGCACT+TGG | + | chr1_4:1107872-1107891 | None:intergenic | 35.0% | |
| ACTACTCTTAACAGTTCCAT+TGG | - | chr1_4:1107917-1107936 | Msa0142230:intron | 35.0% | |
| AGTTCCATTGGCAACTTAAA+AGG | - | chr1_4:1107929-1107948 | Msa0142230:intron | 35.0% | |
| !! | TGTAATACCTCTAGGATTCT+TGG | + | chr1_4:1108050-1108069 | None:intergenic | 35.0% |
| TCCTTCAAAGAATGAGTGTA+GGG | - | chr1_4:1108071-1108090 | Msa0142230:intron | 35.0% | |
| TGAAAGACATAGACTTAGTG+TGG | - | chr1_4:1108135-1108154 | Msa0142230:intron | 35.0% | |
| !! | ACTTTTAGAGGGTGCAAAAA+TGG | - | chr1_4:1108231-1108250 | Msa0142230:intron | 35.0% |
| TACTACTCTTTGATGAATGG+CGG | - | chr1_4:1108611-1108630 | Msa0142230:CDS | 35.0% | |
| !! | TTTTTCGGTTGAGTTAGGAC+AGG | + | chr1_4:1103417-1103436 | None:intergenic | 40.0% |
| TTCATGTCTACTGCAGTGTA+TGG | - | chr1_4:1103863-1103882 | Msa0142230:CDS | 40.0% | |
| TCATGTCTACTGCAGTGTAT+GGG | - | chr1_4:1103864-1103883 | Msa0142230:CDS | 40.0% | |
| TTGACAAAGAAGCTTCACCA+AGG | - | chr1_4:1103938-1103957 | Msa0142230:CDS | 40.0% | |
| TACATTGCTGATGCTCATCT+TGG | - | chr1_4:1104031-1104050 | Msa0142230:intron | 40.0% | |
| AACCCTCCGATCTTTATAAG+AGG | - | chr1_4:1104168-1104187 | Msa0142230:intron | 40.0% | |
| GTCCTCTTATAAAGATCGGA+GGG | + | chr1_4:1104173-1104192 | None:intergenic | 40.0% | |
| TAAGAGGACCTTTGTAATCC+AGG | - | chr1_4:1104184-1104203 | Msa0142230:intron | 40.0% | |
| AAGAGGACCTTTGTAATCCA+GGG | - | chr1_4:1104185-1104204 | Msa0142230:intron | 40.0% | |
| ATTCTTGCCCTGGATTACAA+AGG | + | chr1_4:1104195-1104214 | None:intergenic | 40.0% | |
| AACAAATTGCATTCTTGCCC+TGG | + | chr1_4:1104205-1104224 | None:intergenic | 40.0% | |
| GGGAAAATAGAAGGAGAAGA+TGG | + | chr1_4:1104824-1104843 | None:intergenic | 40.0% | |
| ATGTCGGAATCTATCTTCCA+CGG | + | chr1_4:1104924-1104943 | None:intergenic | 40.0% | |
| TGGAAGATAGATTCCGACAT+TGG | - | chr1_4:1104924-1104943 | Msa0142230:CDS | 40.0% | |
| GGAAGATAGATTCCGACATT+GGG | - | chr1_4:1104925-1104944 | Msa0142230:CDS | 40.0% | |
| ATAGATTCCGACATTGGGAA+TGG | - | chr1_4:1104930-1104949 | Msa0142230:CDS | 40.0% | |
| CTGCCCTTGTGACTTATTTA+TGG | - | chr1_4:1104954-1104973 | Msa0142230:CDS | 40.0% | |
| ! | ACCTCTTTCAGCACACTTTT+GGG | + | chr1_4:1106182-1106201 | None:intergenic | 40.0% |
| ! | TACCTCTTTCAGCACACTTT+TGG | + | chr1_4:1106183-1106202 | None:intergenic | 40.0% |
| ! | CATTAGTTTCGGTTATTGGC+AGG | - | chr1_4:1106693-1106712 | Msa0142230:intron | 40.0% |
| CATTGCATTTAGGTGGCTTT+AGG | + | chr1_4:1106756-1106775 | None:intergenic | 40.0% | |
| GCCACCTAAATGCAATGAAA+TGG | - | chr1_4:1106759-1106778 | Msa0142230:intron | 40.0% | |
| TCCCACTGCTATAATGTAGA+GGG | + | chr1_4:1106839-1106858 | None:intergenic | 40.0% | |
| TTCCCACTGCTATAATGTAG+AGG | + | chr1_4:1106840-1106859 | None:intergenic | 40.0% | |
| TACATTATAGCAGTGGGAAC+AGG | - | chr1_4:1106841-1106860 | Msa0142230:intron | 40.0% | |
| GCACCAATGGTTGAAATGTT+GGG | + | chr1_4:1106877-1106896 | None:intergenic | 40.0% | |
| AGCACCAATGGTTGAAATGT+TGG | + | chr1_4:1106878-1106897 | None:intergenic | 40.0% | |
| TAGGGTCAAAATCGTCAAAC+TGG | + | chr1_4:1106903-1106922 | None:intergenic | 40.0% | |
| GATATTGCAAGTCCAAGAGT+TGG | + | chr1_4:1107054-1107073 | None:intergenic | 40.0% | |
| TCAATCATCACATTCTTGGC+AGG | - | chr1_4:1107072-1107091 | Msa0142230:intron | 40.0% | |
| AGGGAGTCCATTTATTAGCA+TGG | - | chr1_4:1107125-1107144 | Msa0142230:intron | 40.0% | |
| CAAGTAAATGCGAGTATGGT+AGG | + | chr1_4:1107292-1107311 | None:intergenic | 40.0% | |
| !! | GTGTTTGAAAGAGTGTTCGA+GGG | + | chr1_4:1107340-1107359 | None:intergenic | 40.0% |
| !! | AGTGTTTGAAAGAGTGTTCG+AGG | + | chr1_4:1107341-1107360 | None:intergenic | 40.0% |
| CAGGATATAAGACACGTCTT+CGG | + | chr1_4:1107524-1107543 | None:intergenic | 40.0% | |
| CATGTGCAGGTTCCTTAATA+AGG | - | chr1_4:1107730-1107749 | Msa0142230:CDS | 40.0% | |
| GTTCCTTAATAAGGCATGTG+TGG | - | chr1_4:1107739-1107758 | Msa0142230:CDS | 40.0% | |
| ! | TGTCCACACATGCCTTATTA+AGG | + | chr1_4:1107745-1107764 | None:intergenic | 40.0% |
| CCCAAATAGGGATTAAGCTA+AGG | + | chr1_4:1107835-1107854 | None:intergenic | 40.0% | |
| !!! | AGGACCTTTTAAGTTGCCAA+TGG | + | chr1_4:1107936-1107955 | None:intergenic | 40.0% |
| GTACATGCAGTTAAACTTGC+TGG | + | chr1_4:1107959-1107978 | None:intergenic | 40.0% | |
| AAGTTGACCAAGAATCCTAG+AGG | - | chr1_4:1108040-1108059 | Msa0142230:intron | 40.0% | |
| ! | TGAAGGAGTGTAATACCTCT+AGG | + | chr1_4:1108058-1108077 | None:intergenic | 40.0% |
| CTCCTTCAAAGAATGAGTGT+AGG | - | chr1_4:1108070-1108089 | Msa0142230:intron | 40.0% | |
| ACCCTACACTCATTCTTTGA+AGG | + | chr1_4:1108075-1108094 | None:intergenic | 40.0% | |
| TCACATGTCACTGAGAAACA+TGG | - | chr1_4:1108364-1108383 | Msa0142230:intron | 40.0% | |
| AGAGTTAGAAACTTCAGCTC+TGG | + | chr1_4:1108512-1108531 | None:intergenic | 40.0% | |
| ACTACTCTTTGATGAATGGC+GGG | - | chr1_4:1108612-1108631 | Msa0142230:CDS | 40.0% | |
| TCTGTTCTCAGATCCAAGAC+AGG | - | chr1_4:1103187-1103206 | Msa0142230:exon | 45.0% | |
| ATGCTCATCTTGGACGCTAT+TGG | - | chr1_4:1104041-1104060 | Msa0142230:intron | 45.0% | |
| GGTCCTCTTATAAAGATCGG+AGG | + | chr1_4:1104174-1104193 | None:intergenic | 45.0% | |
| !! | ACGCTTTGGCCATTGGTTTA+GGG | + | chr1_4:1104254-1104273 | None:intergenic | 45.0% |
| TTCTTTATACGGGCACGCTT+TGG | + | chr1_4:1104268-1104287 | None:intergenic | 45.0% | |
| TTGACCATGAAAACATGCCG+TGG | - | chr1_4:1104904-1104923 | Msa0142230:CDS | 45.0% | |
| ! | TCTTCCACGGCATGTTTTCA+TGG | + | chr1_4:1104911-1104930 | None:intergenic | 45.0% |
| TTCCAGCATTGCTTCCTGTT+AGG | - | chr1_4:1105082-1105101 | Msa0142230:intron | 45.0% | |
| ATCCTAACAGGAAGCAATGC+TGG | + | chr1_4:1105087-1105106 | None:intergenic | 45.0% | |
| AACGAGGACGATTAGTGACA+TGG | - | chr1_4:1105983-1106002 | Msa0142230:intron | 45.0% | |
| !! | CTTTCAGCACACTTTTGGGT+TGG | + | chr1_4:1106178-1106197 | None:intergenic | 45.0% |
| ! | ACCCAAAAGTGTGCTGAAAG+AGG | - | chr1_4:1106178-1106197 | Msa0142230:intron | 45.0% |
| !! | CATTTAGGTGGCTTTAGGCT+TGG | + | chr1_4:1106751-1106770 | None:intergenic | 45.0% |
| TGCCCTCTACATTATAGCAG+TGG | - | chr1_4:1106834-1106853 | Msa0142230:intron | 45.0% | |
| GCCCTCTACATTATAGCAGT+GGG | - | chr1_4:1106835-1106854 | Msa0142230:intron | 45.0% | |
| ATTATAGCAGTGGGAACAGG+TGG | - | chr1_4:1106844-1106863 | Msa0142230:intron | 45.0% | |
| TTATAGCAGTGGGAACAGGT+GGG | - | chr1_4:1106845-1106864 | Msa0142230:intron | 45.0% | |
| AGCTCTCATTCTTGAACTGG+TGG | - | chr1_4:1106938-1106957 | Msa0142230:intron | 45.0% | |
| !! | GATAATGTGGGTTGGAGTCT+TGG | - | chr1_4:1107018-1107037 | Msa0142230:intron | 45.0% |
| GGTTATGCTCTTCCAACTCT+TGG | - | chr1_4:1107039-1107058 | Msa0142230:intron | 45.0% | |
| TAGCATGGCTAAGGTCATTG+TGG | - | chr1_4:1107140-1107159 | Msa0142230:intron | 45.0% | |
| AGGTCATTGTGGCAGCTATA+AGG | - | chr1_4:1107151-1107170 | Msa0142230:intron | 45.0% | |
| GGGTCCATTCCCAAAATAGT+GGG | - | chr1_4:1107413-1107432 | Msa0142230:intron | 45.0% | |
| !! | AGGTCCCACTATTTTGGGAA+TGG | + | chr1_4:1107420-1107439 | None:intergenic | 45.0% |
| ! | CATGCAGGTCCCACTATTTT+GGG | + | chr1_4:1107425-1107444 | None:intergenic | 45.0% |
| ! | TCATGCAGGTCCCACTATTT+TGG | + | chr1_4:1107426-1107445 | None:intergenic | 45.0% |
| AATAAGGCATGTGTGGACAC+TGG | - | chr1_4:1107746-1107765 | Msa0142230:CDS | 45.0% | |
| !! | CATGCAGTTAAACTTGCTGG+AGG | + | chr1_4:1107956-1107975 | None:intergenic | 45.0% |
| !! | AGTGGCTGAAGCACTTTTAG+AGG | - | chr1_4:1108219-1108238 | Msa0142230:intron | 45.0% |
| !! | GTGGCTGAAGCACTTTTAGA+GGG | - | chr1_4:1108220-1108239 | Msa0142230:intron | 45.0% |
| CATGTCACTGAGAAACATGG+TGG | - | chr1_4:1108367-1108386 | Msa0142230:intron | 45.0% | |
| CTACTCTTTGATGAATGGCG+GGG | - | chr1_4:1108613-1108632 | Msa0142230:CDS | 45.0% | |
| !! | TAATATCTAATAAAATATAA+TGG | - | chr1_4:1103632-1103651 | Msa0142230:CDS | 5.0% |
| !!! | ATTTATCTTTAATTTAATTT+TGG | - | chr1_4:1105044-1105063 | Msa0142230:intron | 5.0% |
| !!! | TTTATCTTTAATTTAATTTT+GGG | - | chr1_4:1105045-1105064 | Msa0142230:intron | 5.0% |
| !!! | AAAAATTTTTTTTTTTTACA+AGG | + | chr1_4:1105565-1105584 | None:intergenic | 5.0% |
| !! | CTTATATTAATAAAATAATA+TGG | - | chr1_4:1105754-1105773 | Msa0142230:intron | 5.0% |
| !! | AAAATTAAAATTAAAGATTA+AGG | - | chr1_4:1106132-1106151 | Msa0142230:intron | 5.0% |
| !! | AAATTAAAATTAAAGATTAA+GGG | - | chr1_4:1106133-1106152 | Msa0142230:intron | 5.0% |
| GTTCTCAGATCCAAGACAGG+TGG | - | chr1_4:1103190-1103209 | Msa0142230:CDS | 50.0% | |
| TCAGATCCAAGACAGGTGGT+TGG | - | chr1_4:1103194-1103213 | Msa0142230:CDS | 50.0% | |
| AGCTTTCCAACCACCTGTCT+TGG | + | chr1_4:1103203-1103222 | None:intergenic | 50.0% | |
| CGGTCATATCGATATGACCG+TGG | - | chr1_4:1103456-1103475 | Msa0142230:CDS | 50.0% | |
| TGGAAGAGATGACAGTGCCT+TGG | + | chr1_4:1103958-1103977 | None:intergenic | 50.0% | |
| !! | CACGCTTTGGCCATTGGTTT+AGG | + | chr1_4:1104255-1104274 | None:intergenic | 50.0% |
| AGTAGAAAGAGCGGACAGAC+GGG | + | chr1_4:1104453-1104472 | None:intergenic | 50.0% | |
| CAGTAGAAAGAGCGGACAGA+CGG | + | chr1_4:1104454-1104473 | None:intergenic | 50.0% | |
| CGTTAGCGCAGTAGAAAGAG+CGG | + | chr1_4:1104462-1104481 | None:intergenic | 50.0% | |
| GGGACACGATTGTTATGTCG+TGG | + | chr1_4:1105138-1105157 | None:intergenic | 50.0% | |
| !! | AGGTGGCTTTAGGCTTGGTA+GGG | + | chr1_4:1106746-1106765 | None:intergenic | 50.0% |
| !! | TAGGTGGCTTTAGGCTTGGT+AGG | + | chr1_4:1106747-1106766 | None:intergenic | 50.0% |
| GTCAAACTGGTCAGCACCAA+TGG | + | chr1_4:1106890-1106909 | None:intergenic | 50.0% | |
| GGGGTCCATTCCCAAAATAG+TGG | - | chr1_4:1107412-1107431 | Msa0142230:intron | 50.0% | |
| ACGTCTTCGGCCAAGCAAAA+TGG | + | chr1_4:1107511-1107530 | None:intergenic | 50.0% | |
| TGACACTAACACGTCGACAC+TGG | + | chr1_4:1107589-1107608 | None:intergenic | 50.0% | |
| CCAAGGCTCTTCATGCTTTC+TGG | + | chr1_4:1108277-1108296 | None:intergenic | 50.0% | |
| ! | CCAGAAAGCATGAAGAGCCT+TGG | - | chr1_4:1108274-1108293 | Msa0142230:intron | 50.0% |
| ACTGAGAAACATGGTGGTCG+AGG | - | chr1_4:1108373-1108392 | Msa0142230:intron | 50.0% | |
| CTGAGAAACATGGTGGTCGA+GGG | - | chr1_4:1108374-1108393 | Msa0142230:intron | 50.0% | |
| GGGCAGACCATTCCCAATGT+CGG | + | chr1_4:1104940-1104959 | None:intergenic | 55.0% | |
| AGAAACATGGTGGTCGAGGG+TGG | - | chr1_4:1108377-1108396 | Msa0142230:intron | 55.0% | |
| TACGGGCACGCTTTGGCCAT+TGG | + | chr1_4:1104261-1104280 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 1103124 | 1108651 | 1103124 | ID=Msa0142230;Name=Msa0142230 |
| chr1_4 | mRNA | 1103124 | 1108651 | 1103124 | ID=Msa0142230-mRNA-1;Parent=Msa0142230;Name=Msa0142230-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0.5|1|1|1|4|66|581 |
| chr1_4 | exon | 1103124 | 1104036 | 1103124 | ID=Msa0142230-mRNA-1:exon:343;Parent=Msa0142230-mRNA-1 |
| chr1_4 | exon | 1104495 | 1105060 | 1104495 | ID=Msa0142230-mRNA-1:exon:342;Parent=Msa0142230-mRNA-1 |
| chr1_4 | exon | 1107679 | 1107896 | 1107679 | ID=Msa0142230-mRNA-1:exon:341;Parent=Msa0142230-mRNA-1 |
| chr1_4 | exon | 1108537 | 1108651 | 1108537 | ID=Msa0142230-mRNA-1:exon:340;Parent=Msa0142230-mRNA-1 |
| chr1_4 | CDS | 1108537 | 1108651 | 1108537 | ID=Msa0142230-mRNA-1:cds;Parent=Msa0142230-mRNA-1 |
| chr1_4 | CDS | 1107679 | 1107896 | 1107679 | ID=Msa0142230-mRNA-1:cds;Parent=Msa0142230-mRNA-1 |
| chr1_4 | CDS | 1104495 | 1105060 | 1104495 | ID=Msa0142230-mRNA-1:cds;Parent=Msa0142230-mRNA-1 |
| chr1_4 | CDS | 1103190 | 1104036 | 1103190 | ID=Msa0142230-mRNA-1:cds;Parent=Msa0142230-mRNA-1 |
| chr1_4 | three_prime_UTR | 1103124 | 1103189 | 1103124 | ID=Msa0142230-mRNA-1:three_prime_utr;Parent=Msa0142230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
