Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0314090 | XP_024632143.1 | 97.315 | 298 | 8 | 0 | 1 | 298 | 185 | 482 | 0.0 | 612 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0314090 | sp|F4HZX7|OFUT8_ARATH | 69.932 | 296 | 88 | 1 | 1 | 296 | 316 | 610 | 6.19e-145 | 423 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0108160 | Msa0314090 | 0.803067 | 4.160944e-49 | -8.615850e-47 |
| Msa0193730 | Msa0314090 | 0.969885 | 8.758667e-131 | -8.615850e-47 |
| Msa0199960 | Msa0314090 | 0.811843 | 5.715916e-51 | -8.615850e-47 |
| Msa0243600 | Msa0314090 | 0.820343 | 7.212938e-53 | -8.615850e-47 |
| Msa0282220 | Msa0314090 | 0.813313 | 2.726610e-51 | -8.615850e-47 |
| Msa0314090 | Msa0337540 | 0.823747 | 1.172454e-53 | -8.615850e-47 |
| Msa0314090 | Msa0548620 | 0.832258 | 1.047653e-55 | -8.615850e-47 |
| Msa0314090 | Msa0629600 | 0.827384 | 1.612176e-54 | -8.615850e-47 |
| Msa0314090 | Msa0644980 | 0.808982 | 2.369626e-50 | -8.615850e-47 |
| Msa0314090 | Msa0667370 | 0.831189 | 1.921747e-55 | -8.615850e-47 |
| Msa0314090 | Msa0684500 | 0.808680 | 2.749108e-50 | -8.615850e-47 |
| Msa0314090 | Msa1436420 | 0.802116 | 6.536706e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0314090 | MtrunA17_Chr2g0284071 | 97.315 | 298 | 8 | 0 | 1 | 298 | 346 | 643 | 0.0 | 612 |
| Msa0314090 | MtrunA17_Chr4g0075311 | 59.866 | 299 | 116 | 3 | 1 | 296 | 295 | 592 | 6.06e-123 | 364 |
| Msa0314090 | MtrunA17_Chr5g0448581 | 38.127 | 299 | 143 | 6 | 1 | 297 | 243 | 501 | 6.71e-64 | 211 |
| Msa0314090 | MtrunA17_Chr3g0132951 | 37.209 | 301 | 166 | 10 | 1 | 296 | 234 | 516 | 1.73e-60 | 200 |
| Msa0314090 | MtrunA17_Chr1g0160781 | 37.838 | 296 | 154 | 6 | 2 | 295 | 279 | 546 | 6.67e-60 | 199 |
| Msa0314090 | MtrunA17_Chr4g0043911 | 37.458 | 299 | 157 | 7 | 2 | 298 | 280 | 550 | 1.41e-58 | 196 |
| Msa0314090 | MtrunA17_Chr5g0399311 | 39.098 | 266 | 123 | 6 | 1 | 266 | 250 | 476 | 1.49e-58 | 195 |
| Msa0314090 | MtrunA17_Chr4g0056061 | 35.452 | 299 | 150 | 7 | 1 | 297 | 234 | 491 | 1.02e-57 | 193 |
| Msa0314090 | MtrunA17_Chr5g0412251 | 37.874 | 301 | 164 | 10 | 1 | 296 | 220 | 502 | 7.61e-57 | 190 |
| Msa0314090 | MtrunA17_Chr3g0143821 | 38.346 | 266 | 126 | 5 | 1 | 266 | 236 | 463 | 1.07e-56 | 191 |
| Msa0314090 | MtrunA17_Chr3g0077321 | 36.455 | 299 | 160 | 7 | 1 | 297 | 276 | 546 | 4.35e-56 | 190 |
| Msa0314090 | MtrunA17_Chr5g0424241 | 37.705 | 305 | 153 | 9 | 1 | 297 | 286 | 561 | 1.19e-55 | 189 |
| Msa0314090 | MtrunA17_Chr3g0123521 | 36.093 | 302 | 153 | 11 | 1 | 296 | 281 | 548 | 1.97e-53 | 182 |
| Msa0314090 | MtrunA17_Chr4g0042711 | 36.513 | 304 | 148 | 8 | 1 | 296 | 224 | 490 | 6.92e-49 | 169 |
| Msa0314090 | MtrunA17_Chr5g0417871 | 36.304 | 303 | 152 | 7 | 1 | 297 | 212 | 479 | 4.83e-47 | 164 |
| Msa0314090 | MtrunA17_Chr3g0132371 | 36.000 | 250 | 123 | 5 | 1 | 250 | 265 | 477 | 1.15e-44 | 159 |
| Msa0314090 | MtrunA17_Chr6g0455571 | 35.448 | 268 | 136 | 7 | 1 | 267 | 243 | 474 | 1.73e-44 | 158 |
| Msa0314090 | MtrunA17_Chr5g0426591 | 36.220 | 254 | 125 | 6 | 1 | 254 | 238 | 454 | 2.73e-44 | 157 |
| Msa0314090 | MtrunA17_Chr3g0129981 | 33.013 | 312 | 155 | 10 | 1 | 295 | 237 | 511 | 1.57e-42 | 152 |
| Msa0314090 | MtrunA17_Chr4g0061781 | 35.688 | 269 | 132 | 8 | 2 | 267 | 245 | 475 | 6.23e-42 | 151 |
| Msa0314090 | MtrunA17_Chr2g0307971 | 36.330 | 267 | 129 | 8 | 4 | 267 | 246 | 474 | 1.14e-41 | 150 |
| Msa0314090 | MtrunA17_Chr4g0008451 | 30.645 | 310 | 160 | 10 | 1 | 297 | 356 | 623 | 1.03e-38 | 144 |
| Msa0314090 | MtrunA17_Chr5g0436321 | 29.032 | 310 | 165 | 9 | 1 | 297 | 285 | 552 | 5.36e-37 | 138 |
| Msa0314090 | MtrunA17_Chr1g0204121 | 31.104 | 299 | 153 | 10 | 6 | 296 | 222 | 475 | 1.21e-34 | 131 |
| Msa0314090 | MtrunA17_Chr4g0070551 | 28.664 | 307 | 168 | 10 | 1 | 296 | 352 | 618 | 1.08e-31 | 124 |
| Msa0314090 | MtrunA17_Chr4g0010511 | 30.201 | 298 | 168 | 9 | 1 | 295 | 356 | 616 | 4.36e-31 | 122 |
| Msa0314090 | MtrunA17_Chr3g0087291 | 30.897 | 301 | 162 | 12 | 1 | 295 | 296 | 556 | 1.65e-28 | 114 |
| Msa0314090 | MtrunA17_Chr1g0204141 | 29.836 | 305 | 156 | 12 | 4 | 296 | 220 | 478 | 3.17e-28 | 113 |
| Msa0314090 | MtrunA17_Chr7g0240241 | 44.538 | 119 | 58 | 2 | 68 | 183 | 8 | 121 | 4.03e-24 | 95.1 |
| Msa0314090 | MtrunA17_Chr4g0003561 | 33.133 | 166 | 98 | 6 | 68 | 232 | 235 | 388 | 4.67e-17 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0314090 | AT1G29200.3 | 69.932 | 296 | 88 | 1 | 1 | 296 | 126 | 420 | 7.01e-148 | 422 |
| Msa0314090 | AT1G29200.4 | 69.932 | 296 | 88 | 1 | 1 | 296 | 200 | 494 | 2.26e-147 | 423 |
| Msa0314090 | AT1G29200.1 | 69.932 | 296 | 88 | 1 | 1 | 296 | 200 | 494 | 2.26e-147 | 423 |
| Msa0314090 | AT1G29200.2 | 69.932 | 296 | 88 | 1 | 1 | 296 | 316 | 610 | 6.29e-146 | 423 |
| Msa0314090 | AT1G62330.1 | 56.811 | 301 | 125 | 2 | 1 | 297 | 352 | 651 | 2.61e-123 | 367 |
| Msa0314090 | AT1G11990.2 | 56.721 | 305 | 122 | 2 | 1 | 295 | 306 | 610 | 2.44e-109 | 330 |
| Msa0314090 | AT1G11990.1 | 55.932 | 295 | 103 | 2 | 1 | 295 | 321 | 588 | 1.03e-103 | 315 |
| Msa0314090 | AT2G01480.1 | 37.793 | 299 | 156 | 6 | 2 | 298 | 284 | 554 | 1.28e-61 | 205 |
| Msa0314090 | AT4G38390.1 | 38.951 | 267 | 125 | 5 | 1 | 267 | 249 | 477 | 2.65e-59 | 198 |
| Msa0314090 | AT1G14970.3 | 37.124 | 299 | 158 | 6 | 2 | 298 | 139 | 409 | 3.76e-59 | 194 |
| Msa0314090 | AT1G14970.2 | 37.124 | 299 | 158 | 6 | 2 | 298 | 165 | 435 | 6.44e-59 | 195 |
| Msa0314090 | AT1G14970.1 | 37.124 | 299 | 158 | 6 | 2 | 298 | 285 | 555 | 6.96e-58 | 195 |
| Msa0314090 | AT4G16650.2 | 37.970 | 266 | 126 | 6 | 1 | 266 | 248 | 474 | 3.86e-57 | 192 |
| Msa0314090 | AT4G16650.1 | 37.970 | 266 | 126 | 6 | 1 | 266 | 248 | 474 | 3.86e-57 | 192 |
| Msa0314090 | AT1G20550.1 | 37.500 | 264 | 127 | 5 | 3 | 266 | 235 | 460 | 9.48e-57 | 192 |
| Msa0314090 | AT5G65470.1 | 36.242 | 298 | 173 | 9 | 1 | 295 | 219 | 502 | 4.01e-55 | 186 |
| Msa0314090 | AT2G01480.2 | 39.147 | 258 | 130 | 4 | 2 | 259 | 284 | 514 | 1.19e-54 | 186 |
| Msa0314090 | AT1G76270.1 | 36.090 | 266 | 132 | 5 | 1 | 266 | 230 | 457 | 2.20e-54 | 186 |
| Msa0314090 | AT4G24530.1 | 37.248 | 298 | 170 | 9 | 1 | 296 | 235 | 517 | 4.18e-54 | 184 |
| Msa0314090 | AT3G26370.1 | 34.768 | 302 | 157 | 10 | 1 | 296 | 289 | 556 | 8.01e-53 | 181 |
| Msa0314090 | AT1G35510.1 | 33.779 | 299 | 168 | 7 | 1 | 297 | 288 | 558 | 3.36e-50 | 174 |
| Msa0314090 | AT1G38065.2 | 35.082 | 305 | 163 | 8 | 1 | 298 | 155 | 431 | 1.74e-48 | 168 |
| Msa0314090 | AT1G38065.1 | 35.082 | 305 | 163 | 8 | 1 | 298 | 165 | 441 | 2.22e-48 | 168 |
| Msa0314090 | AT1G14020.1 | 35.621 | 306 | 148 | 10 | 1 | 296 | 218 | 484 | 1.09e-47 | 166 |
| Msa0314090 | AT1G38131.1 | 35.082 | 305 | 163 | 8 | 1 | 298 | 284 | 560 | 1.63e-47 | 167 |
| Msa0314090 | AT2G03280.1 | 38.113 | 265 | 125 | 7 | 4 | 266 | 218 | 445 | 5.00e-47 | 164 |
| Msa0314090 | AT2G03280.2 | 38.113 | 265 | 125 | 7 | 4 | 266 | 245 | 472 | 1.07e-46 | 164 |
| Msa0314090 | AT5G15740.1 | 35.821 | 268 | 133 | 7 | 1 | 266 | 234 | 464 | 6.40e-45 | 159 |
| Msa0314090 | AT3G02250.1 | 35.075 | 268 | 135 | 7 | 1 | 266 | 234 | 464 | 2.16e-43 | 155 |
| Msa0314090 | AT5G64600.1 | 33.858 | 254 | 128 | 6 | 1 | 252 | 240 | 455 | 6.92e-40 | 146 |
| Msa0314090 | AT2G37980.1 | 29.677 | 310 | 163 | 10 | 1 | 297 | 350 | 617 | 4.70e-38 | 142 |
| Msa0314090 | AT1G22460.1 | 33.969 | 262 | 123 | 6 | 1 | 257 | 284 | 500 | 5.78e-38 | 141 |
| Msa0314090 | AT3G54100.1 | 30.225 | 311 | 160 | 10 | 1 | 297 | 346 | 613 | 2.73e-37 | 140 |
| Msa0314090 | AT3G07900.1 | 31.457 | 302 | 163 | 10 | 1 | 297 | 312 | 574 | 3.21e-36 | 137 |
| Msa0314090 | AT5G01100.1 | 31.970 | 269 | 144 | 7 | 2 | 268 | 341 | 572 | 1.17e-35 | 135 |
| Msa0314090 | AT5G35570.1 | 29.032 | 310 | 165 | 9 | 1 | 297 | 375 | 642 | 2.72e-34 | 132 |
| Msa0314090 | AT1G04910.1 | 30.033 | 303 | 155 | 10 | 6 | 298 | 222 | 477 | 2.34e-33 | 128 |
| Msa0314090 | AT2G44500.1 | 30.537 | 298 | 167 | 8 | 1 | 295 | 301 | 561 | 5.64e-33 | 127 |
| Msa0314090 | AT5G63390.1 | 30.667 | 300 | 168 | 9 | 1 | 297 | 288 | 550 | 1.63e-30 | 120 |
| Msa0314090 | AT1G52630.2 | 33.043 | 230 | 126 | 10 | 68 | 296 | 146 | 348 | 5.31e-20 | 89.4 |
| Msa0314090 | AT1G52630.1 | 33.478 | 230 | 125 | 10 | 68 | 296 | 234 | 436 | 9.05e-20 | 89.4 |
| Msa0314090 | AT3G03810.2 | 30.366 | 191 | 97 | 5 | 1 | 188 | 225 | 382 | 8.34e-17 | 81.3 |
| Msa0314090 | AT3G03810.1 | 30.366 | 191 | 97 | 5 | 1 | 188 | 225 | 382 | 8.34e-17 | 81.3 |
Find 144 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTGCTGTAAAGAAATTT+TGG | 0.146814 | 2_4:+9656600 | None:intergenic |
| TTGGCTGGTTCTCGTATTTA+TGG | 0.155059 | 2_4:-9655107 | Msa0314090:CDS |
| AAGACCAACTCCTGAATTTA+AGG | 0.157623 | 2_4:-9657973 | Msa0314090:five_prime_UTR |
| CATAAAGATGCCTGCTTATA+TGG | 0.167660 | 2_4:+9657239 | None:intergenic |
| CAACTTTCATCATTGGTATC+TGG | 0.171938 | 2_4:-9653515 | Msa0314090:CDS |
| CTCCAATGGATTTGAGAAAA+AGG | 0.174801 | 2_4:-9655208 | Msa0314090:CDS |
| TTCAAAGTACAATACTATTA+AGG | 0.188155 | 2_4:-9657811 | Msa0314090:five_prime_UTR |
| ATATGGTTCCGTCCATAATT+TGG | 0.206709 | 2_4:+9657256 | None:intergenic |
| CATATAAGCAGGCATCTTTA+TGG | 0.209772 | 2_4:-9657238 | Msa0314090:five_prime_UTR |
| TCCTATGCCTTCTGATATTC+AGG | 0.236744 | 2_4:-9656096 | Msa0314090:intron |
| AATTCAGGAGTTGGTCTTCT+TGG | 0.244745 | 2_4:+9657978 | None:intergenic |
| AGAACTATTGTTCTCATGTT+TGG | 0.257921 | 2_4:-9657762 | Msa0314090:five_prime_UTR |
| AGCAAGAGTCATCCAAATTA+TGG | 0.280319 | 2_4:-9657268 | Msa0314090:five_prime_UTR |
| TGTTCTCATGTTTGGATTGT+TGG | 0.286077 | 2_4:-9657754 | Msa0314090:five_prime_UTR |
| CTTATACATAAACACTTAAA+TGG | 0.305607 | 2_4:+9653135 | None:intergenic |
| ACCATGTAGCAACAAAGTTT+TGG | 0.307426 | 2_4:+9657848 | None:intergenic |
| CCAAAGGATTAGAAAATATA+GGG | 0.308578 | 2_4:-9655581 | Msa0314090:CDS |
| AATAGAGTTGTTCACTTCCT+TGG | 0.320528 | 2_4:-9656143 | Msa0314090:five_prime_UTR |
| AGAACAAGTGCTGCTTCTTC+TGG | 0.322296 | 2_4:+9655167 | None:intergenic |
| TGTTGTTTGCACATGCATTC+TGG | 0.323302 | 2_4:+9653299 | None:intergenic |
| TCAAAGTACAATACTATTAA+GGG | 0.325554 | 2_4:-9657810 | Msa0314090:five_prime_UTR |
| GAATAACAAGAGTTGCATTC+AGG | 0.325705 | 2_4:+9656622 | None:intergenic |
| GAAGCTAAGAAGTAGGTGAT+AGG | 0.331238 | 2_4:+9658136 | None:intergenic |
| GCCTATTCCATGTGTGAGTT+TGG | 0.339200 | 2_4:-9655433 | Msa0314090:CDS |
| CCACTGAACTTGCACCATTC+AGG | 0.347818 | 2_4:-9655013 | Msa0314090:CDS |
| TTGAATGCAGATGGCTGCTT+TGG | 0.348889 | 2_4:-9653591 | Msa0314090:intron |
| GATGATTGATGATAGTATAA+TGG | 0.351363 | 2_4:-9658015 | Msa0314090:five_prime_UTR |
| TCCAAAGGATTAGAAAATAT+AGG | 0.379659 | 2_4:-9655582 | Msa0314090:CDS |
| CTTCATGATCTTTCTTGTTG+TGG | 0.381286 | 2_4:+9655515 | None:intergenic |
| CTTAAGATTTGAAATAGATA+TGG | 0.390557 | 2_4:-9655458 | Msa0314090:CDS |
| GCACTTGTTCTAGCAGGTCT+TGG | 0.391956 | 2_4:-9655155 | Msa0314090:CDS |
| GTTCTCATGTTTGGATTGTT+GGG | 0.392639 | 2_4:-9657753 | Msa0314090:five_prime_UTR |
| AACTTTCATCATTGGTATCT+GGG | 0.393910 | 2_4:-9653514 | Msa0314090:CDS |
| ACAAGAAACTTACATTTACT+TGG | 0.395071 | 2_4:-9655126 | Msa0314090:CDS |
| ATGCATGTGCAAACAACATT+AGG | 0.400899 | 2_4:-9653294 | Msa0314090:exon |
| CTAGCAGCACCCTTAAATTC+AGG | 0.409298 | 2_4:+9657963 | None:intergenic |
| CCCGTCTGAAATAAAATCTC+TGG | 0.415268 | 2_4:-9656355 | Msa0314090:five_prime_UTR |
| GAAACTTACATTTACTTGGC+TGG | 0.416296 | 2_4:-9655122 | Msa0314090:CDS |
| GTACGATCGGCTTCTAAACT+TGG | 0.417488 | 2_4:-9657436 | Msa0314090:five_prime_UTR |
| AAATCATTCAAGTGAGCTTC+AGG | 0.417834 | 2_4:-9657658 | Msa0314090:intron |
| AAAAGTTTATATACCTGGAT+TGG | 0.424503 | 2_4:+9657187 | None:intergenic |
| CCAGTTTGGTGACATATATC+AGG | 0.426949 | 2_4:-9656430 | Msa0314090:five_prime_UTR |
| AATTTCTTTACAGCAATGTA+TGG | 0.429014 | 2_4:-9656596 | Msa0314090:five_prime_UTR |
| GGTGCTGCTAGAGGAATGTT+AGG | 0.433994 | 2_4:-9657951 | Msa0314090:five_prime_UTR |
| GAGGCTAGCCTTGTCTTGTT+CGG | 0.434377 | 2_4:+9653449 | None:intergenic |
| TCTGGGTTCAGAACCTACTA+TGG | 0.437017 | 2_4:-9653497 | Msa0314090:CDS |
| TATATGAGCAAGGACCAATA+TGG | 0.437110 | 2_4:+9658072 | None:intergenic |
| ATGATTGATGATAGTATAAT+GGG | 0.444622 | 2_4:-9658014 | Msa0314090:five_prime_UTR |
| TGCAGAAGCAATTGGTAGCC+AGG | 0.449547 | 2_4:-9656331 | Msa0314090:intron |
| AGGAGGTGAGAATGAGAGAA+AGG | 0.449737 | 2_4:-9655410 | Msa0314090:CDS |
| AACTTCAAGCCTACCGAGAA+AGG | 0.449792 | 2_4:-9655387 | Msa0314090:CDS |
| AATATTCTGAAGGACGATAT+CGG | 0.450509 | 2_4:-9656393 | Msa0314090:five_prime_UTR |
| TGGTAGCCAACTTTCATCAT+TGG | 0.450993 | 2_4:-9653522 | Msa0314090:CDS |
| TCCAAAACTTTGTTGCTACA+TGG | 0.456791 | 2_4:-9657849 | Msa0314090:five_prime_UTR |
| AAGCTAAGAAGTAGGTGATA+GGG | 0.459370 | 2_4:+9658137 | None:intergenic |
| CTTGGATATGCAAATCGACT+TGG | 0.461392 | 2_4:-9656125 | Msa0314090:five_prime_UTR |
| CAAGTTCAGTGGTGGTAAGA+AGG | 0.463528 | 2_4:+9655024 | None:intergenic |
| CCTGATATATGTCACCAAAC+TGG | 0.467370 | 2_4:+9656430 | None:intergenic |
| GCTGCTTCTTCTGGTGTCAA+TGG | 0.469728 | 2_4:+9655176 | None:intergenic |
| AGAGAGGGAAATGCCTTTCT+CGG | 0.470911 | 2_4:+9655374 | None:intergenic |
| TTATAGCTCTATTTCTCCAA+TGG | 0.472089 | 2_4:-9655222 | Msa0314090:intron |
| TTCAAAACCATTCCATCCTA+TGG | 0.473494 | 2_4:+9653406 | None:intergenic |
| TCCAAACTCACACATGGAAT+AGG | 0.475315 | 2_4:+9655432 | None:intergenic |
| CCATTGTTTCTCAGTGATGT+AGG | 0.475397 | 2_4:+9657470 | None:intergenic |
| AGACCAACTCCTGAATTTAA+GGG | 0.477088 | 2_4:-9657972 | Msa0314090:five_prime_UTR |
| TACATCTTAGTCAGTGCAAA+TGG | 0.478144 | 2_4:-9656874 | Msa0314090:five_prime_UTR |
| AATGCTGGCATAAGGAGTTA+TGG | 0.478737 | 2_4:-9653350 | Msa0314090:CDS |
| TATTCCATGTGTGAGTTTGG+AGG | 0.479641 | 2_4:-9655430 | Msa0314090:CDS |
| CAGATACCAATGATGAAAGT+TGG | 0.480381 | 2_4:+9653516 | None:intergenic |
| ATGATCCACCGTCGTGGAAG+AGG | 0.489666 | 2_4:-9657899 | Msa0314090:five_prime_UTR |
| ATGTTAGACACTCAGTTGCT+AGG | 0.493352 | 2_4:-9655547 | Msa0314090:CDS |
| ATTTAAGTGCCTATAGCATA+AGG | 0.493481 | 2_4:-9653163 | Msa0314090:three_prime_UTR |
| CCTTGTCTTGTTCGGCCGCA+AGG | 0.502900 | 2_4:+9653457 | None:intergenic |
| GAAGCAGCACTTGTTCTAGC+AGG | 0.503559 | 2_4:-9655161 | Msa0314090:CDS |
| GCACCCTTAAATTCAGGAGT+TGG | 0.505405 | 2_4:+9657969 | None:intergenic |
| TTCAAGCGCTCAAGAAAGAG+AGG | 0.508750 | 2_4:+9655358 | None:intergenic |
| AAGGTCAGAATGCTGGCATA+AGG | 0.510386 | 2_4:-9653358 | Msa0314090:CDS |
| ATGGTAAGACCTTATGCTAT+AGG | 0.514469 | 2_4:+9653154 | None:intergenic |
| TCATACCTCTGCAAGAGCAC+TGG | 0.517203 | 2_4:+9657410 | None:intergenic |
| TGGAAGTGAAGCTAAGAAGT+AGG | 0.517375 | 2_4:+9658129 | None:intergenic |
| GAATGATTTGAAGCTGCACT+TGG | 0.525414 | 2_4:+9657672 | None:intergenic |
| AGAAAAGTTCAAACCAATCC+AGG | 0.526293 | 2_4:-9657200 | Msa0314090:intron |
| TTGGGACAAACTTCAAAGCA+TGG | 0.532333 | 2_4:+9655632 | None:intergenic |
| AGCCGATCGTACATATGTAC+AGG | 0.533642 | 2_4:+9657447 | None:intergenic |
| TCTCTGGATGCAGAAGCAAT+TGG | 0.533798 | 2_4:-9656339 | Msa0314090:five_prime_UTR |
| GTCTTGTTCGGCCGCAAGGT+AGG | 0.536587 | 2_4:+9653461 | None:intergenic |
| TCTTTACAGCAATGTATGGA+AGG | 0.538127 | 2_4:-9656592 | Msa0314090:five_prime_UTR |
| TGTTAGACACTCAGTTGCTA+GGG | 0.540082 | 2_4:-9655546 | Msa0314090:CDS |
| TGGTCAAGTTTGTTAATGCA+AGG | 0.542542 | 2_4:+9653234 | None:intergenic |
| GAAGCATATATAGATATCCT+AGG | 0.543699 | 2_4:-9653325 | Msa0314090:CDS |
| AGATGAAAATAGAATCAAGA+AGG | 0.543945 | 2_4:+9657721 | None:intergenic |
| TGACAGCGGTTGATTGTCGT+TGG | 0.546207 | 2_4:-9657875 | Msa0314090:five_prime_UTR |
| ATTGGGATAGAGTCTATTGA+AGG | 0.548098 | 2_4:+9655064 | None:intergenic |
| AGGGAAATGCCTTTCTCGGT+AGG | 0.548278 | 2_4:+9655378 | None:intergenic |
| AGCATGACCGCCGCCATAGT+AGG | 0.548625 | 2_4:+9653484 | None:intergenic |
| GATAGTATAATGGGAAAACA+AGG | 0.553391 | 2_4:-9658005 | Msa0314090:five_prime_UTR |
| CTGGCTCTCTATTGATCCAA+AGG | 0.554908 | 2_4:-9655597 | Msa0314090:CDS |
| GAATTTAAGGGTGCTGCTAG+AGG | 0.557595 | 2_4:-9657960 | Msa0314090:five_prime_UTR |
| GGGAAATCTAAGAAAAGTAA+TGG | 0.559667 | 2_4:-9656898 | Msa0314090:five_prime_UTR |
| TTATGGAGGAAACTCAAGAA+TGG | 0.560261 | 2_4:-9655090 | Msa0314090:CDS |
| ATTCTGGAAGGTCAGAATGC+TGG | 0.561057 | 2_4:-9653365 | Msa0314090:CDS |
| AGATGCAGTTCTTGCAAAGG+AGG | 0.569131 | 2_4:-9656213 | Msa0314090:five_prime_UTR |
| TACAGATGCAGTTCTTGCAA+AGG | 0.569727 | 2_4:-9656216 | Msa0314090:five_prime_UTR |
| AATGACACCATAGGATGGAA+TGG | 0.570826 | 2_4:-9653413 | Msa0314090:CDS |
| ATGGACGGAACCATATAAGC+AGG | 0.571410 | 2_4:-9657249 | Msa0314090:five_prime_UTR |
| AAGATTTGAAATAGATATGG+TGG | 0.571650 | 2_4:-9655455 | Msa0314090:CDS |
| TTCAGAACCTACTATGGCGG+CGG | 0.576194 | 2_4:-9653491 | Msa0314090:CDS |
| GATTTGCAATGCTGTGGCTG+TGG | 0.576778 | 2_4:-9656652 | Msa0314090:five_prime_UTR |
| TTTGCTGAGAATGACACCAT+AGG | 0.579883 | 2_4:-9653422 | Msa0314090:CDS |
| GGCCTGTACATATGTACGAT+CGG | 0.580265 | 2_4:-9657449 | Msa0314090:five_prime_UTR |
| CTGAGAATGACACCATAGGA+TGG | 0.581020 | 2_4:-9653418 | Msa0314090:CDS |
| GTCATCCTCTTCCACGACGG+TGG | 0.586872 | 2_4:+9657894 | None:intergenic |
| GGCGTCCAGTGCTCTTGCAG+AGG | 0.591953 | 2_4:-9657415 | Msa0314090:intron |
| GCAATGTATGGAAGGATCCA+AGG | 0.593126 | 2_4:-9656584 | Msa0314090:intron |
| CCTTGCGGCCGAACAAGACA+AGG | 0.594618 | 2_4:-9653457 | Msa0314090:CDS |
| GCTGGTTCTCGTATTTATGG+AGG | 0.596017 | 2_4:-9655104 | Msa0314090:CDS |
| ACCTCCTCCAAACTCACACA+TGG | 0.600087 | 2_4:+9655426 | None:intergenic |
| GTATTTCATAAATATTCTGA+AGG | 0.610405 | 2_4:-9656403 | Msa0314090:five_prime_UTR |
| TCCATGTGTGAGTTTGGAGG+AGG | 0.612318 | 2_4:-9655427 | Msa0314090:CDS |
| TGAATGCAAATATATGAGCA+AGG | 0.612632 | 2_4:+9658062 | None:intergenic |
| CAAGTCGATTTGCATATCCA+AGG | 0.614488 | 2_4:+9656126 | None:intergenic |
| GGACGATATCGGTATTGTGA+AGG | 0.620369 | 2_4:-9656382 | Msa0314090:five_prime_UTR |
| CTTGTGACCTGAATATCAGA+AGG | 0.622679 | 2_4:+9656089 | None:intergenic |
| CACATGCATTCTGGACACCT+AGG | 0.625165 | 2_4:+9653308 | None:intergenic |
| CCTACATCACTGAGAAACAA+TGG | 0.628259 | 2_4:-9657470 | Msa0314090:five_prime_UTR |
| TTGGCTACCAGAGTCAGTCA+TGG | 0.632066 | 2_4:+9653535 | None:intergenic |
| AAAGATCATGAAGCTGCGAA+AGG | 0.634216 | 2_4:-9655505 | Msa0314090:CDS |
| ATCTTAGTCAGTGCAAATGG+TGG | 0.642391 | 2_4:-9656871 | Msa0314090:five_prime_UTR |
| ACCTGAATATCAGAAGGCAT+AGG | 0.644694 | 2_4:+9656095 | None:intergenic |
| AGAGTCATCCAAATTATGGA+CGG | 0.649877 | 2_4:-9657264 | Msa0314090:five_prime_UTR |
| CTATCCCAATGTAGTCACAA+AGG | 0.650613 | 2_4:-9655051 | Msa0314090:CDS |
| TTTGATATAGTCAGCAACGG+TGG | 0.656737 | 2_4:+9656190 | None:intergenic |
| TCAAGCGCTCAAGAAAGAGA+GGG | 0.663510 | 2_4:+9655359 | None:intergenic |
| TGGAGGAAACTCAAGAATGG+AGG | 0.664757 | 2_4:-9655087 | Msa0314090:CDS |
| CAAGCAATGATCCACCGTCG+TGG | 0.665566 | 2_4:-9657905 | Msa0314090:five_prime_UTR |
| CCTGAATGGTGCAAGTTCAG+TGG | 0.684419 | 2_4:+9655013 | None:intergenic |
| ATAGTATAATGGGAAAACAA+GGG | 0.688885 | 2_4:-9658004 | Msa0314090:five_prime_UTR |
| GCTGTCATCCTCTTCCACGA+CGG | 0.692206 | 2_4:+9657891 | None:intergenic |
| AATACAGATTTGCAATGCTG+TGG | 0.698209 | 2_4:-9656658 | Msa0314090:five_prime_UTR |
| GGGTTCAGAACCTACTATGG+CGG | 0.710382 | 2_4:-9653494 | Msa0314090:CDS |
| TGTGTGATTTATGAACAAAG+TGG | 0.714704 | 2_4:+9653214 | None:intergenic |
| GAATGGTGCAAGTTCAGTGG+TGG | 0.720647 | 2_4:+9655016 | None:intergenic |
| GCGGTCATGCTCCTACCTTG+CGG | 0.733987 | 2_4:-9653472 | Msa0314090:CDS |
| GTCGTGGAAGAGGATGACAG+CGG | 0.806642 | 2_4:-9657889 | Msa0314090:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATACTATTATGTAGAAT+AGG | - | chr2_4:9654220-9654239 | Msa0314090:intron | 15.0% |
| !!! | ATTAATTTTTCATTATCACA+TGG | - | chr2_4:9654749-9654768 | Msa0314090:intron | 15.0% |
| !!! | ATGATTGATGATAGTATAAT+GGG | - | chr2_4:9653271-9653290 | Msa0314090:three_prime_UTR | 20.0% |
| !! | TTCAAAGTACAATACTATTA+AGG | - | chr2_4:9653474-9653493 | Msa0314090:CDS | 20.0% |
| !! | TCAAAGTACAATACTATTAA+GGG | - | chr2_4:9653475-9653494 | Msa0314090:CDS | 20.0% |
| !! | GCAAAAATCAATGAAAAATA+TGG | + | chr2_4:9653743-9653762 | None:intergenic | 20.0% |
| !!! | TTTCATTGATTTTTGCAAAT+TGG | - | chr2_4:9653747-9653766 | Msa0314090:intron | 20.0% |
| !!! | TAACATACTTTTTAATGAGA+AGG | - | chr2_4:9653783-9653802 | Msa0314090:intron | 20.0% |
| !! | ATAAGAAAAGTTTATATACC+TGG | + | chr2_4:9654106-9654125 | None:intergenic | 20.0% |
| !! | TTACATCATTTCTCATATTA+AGG | - | chr2_4:9654478-9654497 | Msa0314090:intron | 20.0% |
| !! | CTTTATGAAATTTCCAATAA+TGG | - | chr2_4:9654582-9654601 | Msa0314090:intron | 20.0% |
| !! | ATATTAAACATAGTATACCT+TGG | + | chr2_4:9654721-9654740 | None:intergenic | 20.0% |
| !! | GTATTTCATAAATATTCTGA+AGG | - | chr2_4:9654882-9654901 | Msa0314090:intron | 20.0% |
| !!! | CTTAAGATTTGAAATAGATA+TGG | - | chr2_4:9655827-9655846 | Msa0314090:intron | 20.0% |
| !!! | TTTTGTTGTTGATATTTATG+TGG | - | chr2_4:9656023-9656042 | Msa0314090:intron | 20.0% |
| !! | AAAATACTGAGCTTAAATTA+TGG | - | chr2_4:9656488-9656507 | Msa0314090:intron | 20.0% |
| !! | ATTGTTAAATTAGGATCAAA+CGG | + | chr2_4:9656515-9656534 | None:intergenic | 20.0% |
| !!! | TAGAGTTTTGTTGTATGAAT+TGG | + | chr2_4:9653179-9653198 | None:intergenic | 25.0% |
| !! | GATGATTGATGATAGTATAA+TGG | - | chr2_4:9653270-9653289 | Msa0314090:three_prime_UTR | 25.0% |
| !! | ATAGTATAATGGGAAAACAA+GGG | - | chr2_4:9653281-9653300 | Msa0314090:exon | 25.0% |
| !! | ACTATTAAGGGATTTTATGT+TGG | - | chr2_4:9653487-9653506 | Msa0314090:CDS | 25.0% |
| ! | AGATGAAAATAGAATCAAGA+AGG | + | chr2_4:9653567-9653586 | None:intergenic | 25.0% |
| ! | TCCATATTATTGTAAGCTAT+AGG | - | chr2_4:9653663-9653682 | Msa0314090:intron | 25.0% |
| ! | ACCTATAGCTTACAATAATA+TGG | + | chr2_4:9653667-9653686 | None:intergenic | 25.0% |
| !!! | GCATGAATTTTAGAAGTATT+TGG | + | chr2_4:9653721-9653740 | None:intergenic | 25.0% |
| ! | AAAAGTTTATATACCTGGAT+TGG | + | chr2_4:9654101-9654120 | None:intergenic | 25.0% |
| ! | TTATACAGTCAAGATCATAT+AGG | + | chr2_4:9654559-9654578 | None:intergenic | 25.0% |
| !! | ACATTGCTGTAAAGAAATTT+TGG | + | chr2_4:9654688-9654707 | None:intergenic | 25.0% |
| ! | AATTTCTTTACAGCAATGTA+TGG | - | chr2_4:9654689-9654708 | Msa0314090:intron | 25.0% |
| ! | TTGTTATCAAGTACATTGAT+TGG | + | chr2_4:9654997-9655016 | None:intergenic | 25.0% |
| !!! | AATTTTGATATAGTCAGCAA+CGG | + | chr2_4:9655101-9655120 | None:intergenic | 25.0% |
| !!! | ACTCTATTTTTCAAAAGAAG+AGG | + | chr2_4:9655130-9655149 | None:intergenic | 25.0% |
| ! | TATTCAAAACTAGACAAATG+AGG | + | chr2_4:9655226-9655245 | None:intergenic | 25.0% |
| !! | GATATTGACTATTGAATGTA+AGG | + | chr2_4:9655273-9655292 | None:intergenic | 25.0% |
| ! | ATAGCATCAAATCTTTAGAT+TGG | + | chr2_4:9655415-9655434 | None:intergenic | 25.0% |
| !!! | TAGTATTTTAGTGTACTGTA+AGG | - | chr2_4:9655543-9655562 | Msa0314090:CDS | 25.0% |
| ! | TCCAAAGGATTAGAAAATAT+AGG | - | chr2_4:9655703-9655722 | Msa0314090:intron | 25.0% |
| ! | CCAAAGGATTAGAAAATATA+GGG | - | chr2_4:9655704-9655723 | Msa0314090:intron | 25.0% |
| !! | AAGATTTGAAATAGATATGG+TGG | - | chr2_4:9655830-9655849 | Msa0314090:intron | 25.0% |
| ! | TATCAACAACAAAATTAACG+AGG | + | chr2_4:9656017-9656036 | None:intergenic | 25.0% |
| ! | ACAAGAAACTTACATTTACT+TGG | - | chr2_4:9656159-9656178 | Msa0314090:five_prime_UTR | 25.0% |
| !!! | AATTAGTTTTACTGCATCTT+TGG | - | chr2_4:9656317-9656336 | Msa0314090:intron | 25.0% |
| ! | ATTCTCATTTGCATCTTAAA+AGG | - | chr2_4:9656340-9656359 | Msa0314090:five_prime_UTR | 25.0% |
| ! | TTCTCATTTGCATCTTAAAA+GGG | - | chr2_4:9656341-9656360 | Msa0314090:five_prime_UTR | 25.0% |
| ! | AGAACATATTTGATATGTTG+CGG | + | chr2_4:9656577-9656596 | None:intergenic | 25.0% |
| ! | CTCTTTTTCTAAGTCCATAT+TGG | - | chr2_4:9653199-9653218 | Msa0314090:three_prime_UTR | 30.0% |
| TGAATGCAAATATATGAGCA+AGG | + | chr2_4:9653226-9653245 | None:intergenic | 30.0% | |
| ! | GATAGTATAATGGGAAAACA+AGG | - | chr2_4:9653280-9653299 | Msa0314090:exon | 30.0% |
| AGAACTATTGTTCTCATGTT+TGG | - | chr2_4:9653523-9653542 | Msa0314090:CDS | 30.0% | |
| ! | ACTTTTCTTATGCTTTTAGC+TGG | - | chr2_4:9654115-9654134 | Msa0314090:intron | 30.0% |
| !!! | TGTAGAATAGGCTAGTTTTA+TGG | - | chr2_4:9654232-9654251 | Msa0314090:intron | 30.0% |
| ! | TACATGTTAGTTTCTACCAT+TGG | - | chr2_4:9654284-9654303 | Msa0314090:intron | 30.0% |
| ! | CTGTTTTACAATTTGTGACA+GGG | - | chr2_4:9654367-9654386 | Msa0314090:intron | 30.0% |
| GGGAAATCTAAGAAAAGTAA+TGG | - | chr2_4:9654387-9654406 | Msa0314090:intron | 30.0% | |
| ! | AGTCTTATCACTTCCATTAT+TGG | + | chr2_4:9654598-9654617 | None:intergenic | 30.0% |
| AAAAAAAATTGCAGCCAGTT+TGG | - | chr2_4:9654841-9654860 | Msa0314090:intron | 30.0% | |
| ! | AATATTCTGAAGGACGATAT+CGG | - | chr2_4:9654892-9654911 | Msa0314090:intron | 30.0% |
| !! | TCCAGAGATTTTATTTCAGA+CGG | + | chr2_4:9654934-9654953 | None:intergenic | 30.0% |
| GATGTATAAGATCATAAACC+TGG | + | chr2_4:9654975-9654994 | None:intergenic | 30.0% | |
| ! | CATCTGTAATCTAAAATGCA+AGG | + | chr2_4:9655057-9655076 | None:intergenic | 30.0% |
| ! | TTAGTGTACTGTAAGGTTTT+AGG | - | chr2_4:9655550-9655569 | Msa0314090:CDS | 30.0% |
| ! | TAGTGTACTGTAAGGTTTTA+GGG | - | chr2_4:9655551-9655570 | Msa0314090:CDS | 30.0% |
| ATGTATTGAAATGATTGCAG+AGG | - | chr2_4:9655610-9655629 | Msa0314090:CDS | 30.0% | |
| ! | CCCTATATTTTCTAATCCTT+TGG | + | chr2_4:9655707-9655726 | None:intergenic | 30.0% |
| ! | TTATAGCTCTATTTCTCCAA+TGG | - | chr2_4:9656063-9656082 | Msa0314090:intron | 30.0% |
| ! | TCCAATGGATTTGAGAAAAA+GGG | - | chr2_4:9656078-9656097 | Msa0314090:intron | 30.0% |
| ! | TTTTCCTTTGTGACTACATT+GGG | + | chr2_4:9656241-9656260 | None:intergenic | 30.0% |
| TGAGATGAAAAATTCCTGAA+TGG | + | chr2_4:9656289-9656308 | None:intergenic | 30.0% | |
| ! | ATTCAGGAATTTTTCATCTC+AGG | - | chr2_4:9656288-9656307 | Msa0314090:intron | 30.0% |
| AATTCACGTAGTTAGCATAT+CGG | - | chr2_4:9656413-9656432 | Msa0314090:five_prime_UTR | 30.0% | |
| ACATCGGTGATTGTTAAATT+AGG | + | chr2_4:9656524-9656543 | None:intergenic | 30.0% | |
| !! | AGAATTGATTTGAATGCAGA+TGG | - | chr2_4:9657685-9657704 | Msa0314090:five_prime_UTR | 30.0% |
| AACTTTCATCATTGGTATCT+GGG | - | chr2_4:9657771-9657790 | Msa0314090:five_prime_UTR | 30.0% | |
| CAGAGTAAAAAAGATGATTC+TGG | - | chr2_4:9657904-9657923 | Msa0314090:five_prime_UTR | 30.0% | |
| GTAAAAAAGATGATTCTGGA+AGG | - | chr2_4:9657908-9657927 | Msa0314090:five_prime_UTR | 30.0% | |
| GAAGCATATATAGATATCCT+AGG | - | chr2_4:9657960-9657979 | Msa0314090:five_prime_UTR | 30.0% | |
| TGTGTGATTTATGAACAAAG+TGG | + | chr2_4:9658074-9658093 | None:intergenic | 30.0% | |
| ATTTAAGTGCCTATAGCATA+AGG | - | chr2_4:9658122-9658141 | Msa0314090:five_prime_UTR | 30.0% | |
| AAGCTAAGAAGTAGGTGATA+GGG | + | chr2_4:9653151-9653170 | None:intergenic | 35.0% | |
| TATATGAGCAAGGACCAATA+TGG | + | chr2_4:9653216-9653235 | None:intergenic | 35.0% | |
| AAGACCAACTCCTGAATTTA+AGG | - | chr2_4:9653312-9653331 | Msa0314090:CDS | 35.0% | |
| AGACCAACTCCTGAATTTAA+GGG | - | chr2_4:9653313-9653332 | Msa0314090:CDS | 35.0% | |
| TCCAAAACTTTGTTGCTACA+TGG | - | chr2_4:9653436-9653455 | Msa0314090:CDS | 35.0% | |
| ! | ACCATGTAGCAACAAAGTTT+TGG | + | chr2_4:9653440-9653459 | None:intergenic | 35.0% |
| TGTTCTCATGTTTGGATTGT+TGG | - | chr2_4:9653531-9653550 | Msa0314090:CDS | 35.0% | |
| GTTCTCATGTTTGGATTGTT+GGG | - | chr2_4:9653532-9653551 | Msa0314090:CDS | 35.0% | |
| AAATCATTCAAGTGAGCTTC+AGG | - | chr2_4:9653627-9653646 | Msa0314090:intron | 35.0% | |
| AGCAAGAGTCATCCAAATTA+TGG | - | chr2_4:9654017-9654036 | Msa0314090:intron | 35.0% | |
| AGAGTCATCCAAATTATGGA+CGG | - | chr2_4:9654021-9654040 | Msa0314090:intron | 35.0% | |
| ATATGGTTCCGTCCATAATT+TGG | + | chr2_4:9654032-9654051 | None:intergenic | 35.0% | |
| CATAAAGATGCCTGCTTATA+TGG | + | chr2_4:9654049-9654068 | None:intergenic | 35.0% | |
| CATATAAGCAGGCATCTTTA+TGG | - | chr2_4:9654047-9654066 | Msa0314090:intron | 35.0% | |
| ! | TGAACTTTTCTTTGTGCACA+AGG | + | chr2_4:9654076-9654095 | None:intergenic | 35.0% |
| AGAAAAGTTCAAACCAATCC+AGG | - | chr2_4:9654085-9654104 | Msa0314090:intron | 35.0% | |
| GTAAAATAGTCGTGTACCAA+TGG | + | chr2_4:9654303-9654322 | None:intergenic | 35.0% | |
| CCTGTCACAAATTGTAAAAC+AGG | + | chr2_4:9654369-9654388 | None:intergenic | 35.0% | |
| ! | CCTGTTTTACAATTTGTGAC+AGG | - | chr2_4:9654366-9654385 | Msa0314090:intron | 35.0% |
| TACATCTTAGTCAGTGCAAA+TGG | - | chr2_4:9654411-9654430 | Msa0314090:intron | 35.0% | |
| AGTCAAGATCATATAGGATG+AGG | + | chr2_4:9654553-9654572 | None:intergenic | 35.0% | |
| AATACAGATTTGCAATGCTG+TGG | - | chr2_4:9654627-9654646 | Msa0314090:intron | 35.0% | |
| GAATAACAAGAGTTGCATTC+AGG | + | chr2_4:9654666-9654685 | None:intergenic | 35.0% | |
| TCTTTACAGCAATGTATGGA+AGG | - | chr2_4:9654693-9654712 | Msa0314090:intron | 35.0% | |
| !! | CCAGAGATTTTATTTCAGAC+GGG | + | chr2_4:9654933-9654952 | None:intergenic | 35.0% |
| AATAGAGTTGTTCACTTCCT+TGG | - | chr2_4:9655142-9655161 | Msa0314090:CDS | 35.0% | |
| CTGAATGTAACTACATATGC+CGG | - | chr2_4:9655369-9655388 | Msa0314090:CDS | 35.0% | |
| TCCTAGTCAATAAAGACACT+TGG | - | chr2_4:9655472-9655491 | Msa0314090:CDS | 35.0% | |
| ! | TCCAAGTGTCTTTATTGACT+AGG | + | chr2_4:9655476-9655495 | None:intergenic | 35.0% |
| CACTTGGATAGTTAAGTACT+TGG | - | chr2_4:9655488-9655507 | Msa0314090:CDS | 35.0% | |
| !!! | AGCCAGCTTGTTGAATTTTT+GGG | + | chr2_4:9655674-9655693 | None:intergenic | 35.0% |
| CTTCATGATCTTTCTTGTTG+TGG | + | chr2_4:9655773-9655792 | None:intergenic | 35.0% | |
| ! | CTCCAATGGATTTGAGAAAA+AGG | - | chr2_4:9656077-9656096 | Msa0314090:intron | 35.0% |
| ! | CCAATGGATTTGAGAAAAAG+GGG | - | chr2_4:9656079-9656098 | Msa0314090:intron | 35.0% |
| GAAACTTACATTTACTTGGC+TGG | - | chr2_4:9656163-9656182 | Msa0314090:five_prime_UTR | 35.0% | |
| TTATGGAGGAAACTCAAGAA+TGG | - | chr2_4:9656195-9656214 | Msa0314090:five_prime_UTR | 35.0% | |
| ATTGGGATAGAGTCTATTGA+AGG | + | chr2_4:9656224-9656243 | None:intergenic | 35.0% | |
| ! | GTTTTCCTTTGTGACTACAT+TGG | + | chr2_4:9656242-9656261 | None:intergenic | 35.0% |
| ! | GGAATTTTTCATCTCAGGTA+TGG | - | chr2_4:9656293-9656312 | Msa0314090:intron | 35.0% |
| AGTCATGTTCTTGACAGATT+TGG | - | chr2_4:9656374-9656393 | Msa0314090:five_prime_UTR | 35.0% | |
| CTAACTACGTGAATTTGTGA+CGG | + | chr2_4:9656408-9656427 | None:intergenic | 35.0% | |
| ATCCTACTAGATTTCATCGA+AGG | - | chr2_4:9656604-9656623 | Msa0314090:five_prime_UTR | 35.0% | |
| CAGATACCAATGATGAAAGT+TGG | + | chr2_4:9657772-9657791 | None:intergenic | 35.0% | |
| CAACTTTCATCATTGGTATC+TGG | - | chr2_4:9657770-9657789 | Msa0314090:five_prime_UTR | 35.0% | |
| GTCATTCTCAGCAAAAATTG+AGG | + | chr2_4:9657858-9657877 | None:intergenic | 35.0% | |
| TTCAAAACCATTCCATCCTA+TGG | + | chr2_4:9657882-9657901 | None:intergenic | 35.0% | |
| ATGCATGTGCAAACAACATT+AGG | - | chr2_4:9657991-9658010 | Msa0314090:five_prime_UTR | 35.0% | |
| !! | TGGTCAAGTTTGTTAATGCA+AGG | + | chr2_4:9658054-9658073 | None:intergenic | 35.0% |
| ATGGTAAGACCTTATGCTAT+AGG | + | chr2_4:9658134-9658153 | None:intergenic | 35.0% | |
| GAAGCTAAGAAGTAGGTGAT+AGG | + | chr2_4:9653152-9653171 | None:intergenic | 40.0% | |
| TGGAAGTGAAGCTAAGAAGT+AGG | + | chr2_4:9653159-9653178 | None:intergenic | 40.0% | |
| !! | AATTCAGGAGTTGGTCTTCT+TGG | + | chr2_4:9653310-9653329 | None:intergenic | 40.0% |
| ! | GAATGATTTGAAGCTGCACT+TGG | + | chr2_4:9653616-9653635 | None:intergenic | 40.0% |
| ! | CCATTGTTTCTCAGTGATGT+AGG | + | chr2_4:9653818-9653837 | None:intergenic | 40.0% |
| CCTACATCACTGAGAAACAA+TGG | - | chr2_4:9653815-9653834 | Msa0314090:intron | 40.0% | |
| GCATGCATCAATCTGAAAGT+TGG | + | chr2_4:9653902-9653921 | None:intergenic | 40.0% | |
| ATCTTAGTCAGTGCAAATGG+TGG | - | chr2_4:9654414-9654433 | Msa0314090:intron | 40.0% | |
| CAACGAGTTGCTGTAAGTAT+TGG | - | chr2_4:9654447-9654466 | Msa0314090:intron | 40.0% | |
| CCTGATATATGTCACCAAAC+TGG | + | chr2_4:9654858-9654877 | None:intergenic | 40.0% | |
| ! | CCAGTTTGGTGACATATATC+AGG | - | chr2_4:9654855-9654874 | Msa0314090:intron | 40.0% |
| ! | CCCGTCTGAAATAAAATCTC+TGG | - | chr2_4:9654930-9654949 | Msa0314090:intron | 40.0% |
| TACAGATGCAGTTCTTGCAA+AGG | - | chr2_4:9655069-9655088 | Msa0314090:CDS | 40.0% | |
| TTTGATATAGTCAGCAACGG+TGG | + | chr2_4:9655098-9655117 | None:intergenic | 40.0% | |
| !! | CAAGTCGATTTGCATATCCA+AGG | + | chr2_4:9655162-9655181 | None:intergenic | 40.0% |
| CTTGGATATGCAAATCGACT+TGG | - | chr2_4:9655160-9655179 | Msa0314090:CDS | 40.0% | |
| TCCTATGCCTTCTGATATTC+AGG | - | chr2_4:9655189-9655208 | Msa0314090:CDS | 40.0% | |
| ! | ACCTGAATATCAGAAGGCAT+AGG | + | chr2_4:9655193-9655212 | None:intergenic | 40.0% |
| CTTGTGACCTGAATATCAGA+AGG | + | chr2_4:9655199-9655218 | None:intergenic | 40.0% | |
| TAGGGATCTCACTTGCAATT+AGG | - | chr2_4:9655569-9655588 | Msa0314090:CDS | 40.0% | |
| TTGGGACAAACTTCAAAGCA+TGG | + | chr2_4:9655656-9655675 | None:intergenic | 40.0% | |
| GTCCCAAAAATTCAACAAGC+TGG | - | chr2_4:9655669-9655688 | Msa0314090:intron | 40.0% | |
| !!! | GAGCCAGCTTGTTGAATTTT+TGG | + | chr2_4:9655675-9655694 | None:intergenic | 40.0% |
| ATGTTAGACACTCAGTTGCT+AGG | - | chr2_4:9655738-9655757 | Msa0314090:intron | 40.0% | |
| TGTTAGACACTCAGTTGCTA+GGG | - | chr2_4:9655739-9655758 | Msa0314090:intron | 40.0% | |
| AAAGATCATGAAGCTGCGAA+AGG | - | chr2_4:9655780-9655799 | Msa0314090:intron | 40.0% | |
| TCCAAACTCACACATGGAAT+AGG | + | chr2_4:9655856-9655875 | None:intergenic | 40.0% | |
| TATTCCATGTGTGAGTTTGG+AGG | - | chr2_4:9655855-9655874 | Msa0314090:intron | 40.0% | |
| ! | CCCCTTTTTCTCAAATCCAT+TGG | + | chr2_4:9656082-9656101 | None:intergenic | 40.0% |
| ! | TTGGCTGGTTCTCGTATTTA+TGG | - | chr2_4:9656178-9656197 | Msa0314090:five_prime_UTR | 40.0% |
| CTATCCCAATGTAGTCACAA+AGG | - | chr2_4:9656234-9656253 | Msa0314090:intron | 40.0% | |
| CATTCACACAGTCAGTACAT+CGG | + | chr2_4:9656540-9656559 | None:intergenic | 40.0% | |
| GTCCTTCGATGAAATCTAGT+AGG | + | chr2_4:9656609-9656628 | None:intergenic | 40.0% | |
| !! | GTATTTTCCATGACTGACTC+TGG | - | chr2_4:9657743-9657762 | Msa0314090:five_prime_UTR | 40.0% |
| TGGTAGCCAACTTTCATCAT+TGG | - | chr2_4:9657763-9657782 | Msa0314090:five_prime_UTR | 40.0% | |
| TTTGCTGAGAATGACACCAT+AGG | - | chr2_4:9657863-9657882 | Msa0314090:five_prime_UTR | 40.0% | |
| AATGACACCATAGGATGGAA+TGG | - | chr2_4:9657872-9657891 | Msa0314090:five_prime_UTR | 40.0% | |
| AATGCTGGCATAAGGAGTTA+TGG | - | chr2_4:9657935-9657954 | Msa0314090:five_prime_UTR | 40.0% | |
| ! | TGTTGTTTGCACATGCATTC+TGG | + | chr2_4:9657989-9658008 | None:intergenic | 40.0% |
| GCACCCTTAAATTCAGGAGT+TGG | + | chr2_4:9653319-9653338 | None:intergenic | 45.0% | |
| CTAGCAGCACCCTTAAATTC+AGG | + | chr2_4:9653325-9653344 | None:intergenic | 45.0% | |
| !! | GAATTTAAGGGTGCTGCTAG+AGG | - | chr2_4:9653325-9653344 | Msa0314090:CDS | 45.0% |
| GGCCTGTACATATGTACGAT+CGG | - | chr2_4:9653836-9653855 | Msa0314090:intron | 45.0% | |
| AGCCGATCGTACATATGTAC+AGG | + | chr2_4:9653841-9653860 | None:intergenic | 45.0% | |
| ! | GTACGATCGGCTTCTAAACT+TGG | - | chr2_4:9653849-9653868 | Msa0314090:intron | 45.0% |
| ATGGACGGAACCATATAAGC+AGG | - | chr2_4:9654036-9654055 | Msa0314090:intron | 45.0% | |
| GCAATGTATGGAAGGATCCA+AGG | - | chr2_4:9654701-9654720 | Msa0314090:intron | 45.0% | |
| GGACGATATCGGTATTGTGA+AGG | - | chr2_4:9654903-9654922 | Msa0314090:intron | 45.0% | |
| TCTCTGGATGCAGAAGCAAT+TGG | - | chr2_4:9654946-9654965 | Msa0314090:intron | 45.0% | |
| AGATGCAGTTCTTGCAAAGG+AGG | - | chr2_4:9655072-9655091 | Msa0314090:CDS | 45.0% | |
| ! | CTGGCTCTCTATTGATCCAA+AGG | - | chr2_4:9655688-9655707 | Msa0314090:intron | 45.0% |
| GCCTATTCCATGTGTGAGTT+TGG | - | chr2_4:9655852-9655871 | Msa0314090:intron | 45.0% | |
| AGGAGGTGAGAATGAGAGAA+AGG | - | chr2_4:9655875-9655894 | Msa0314090:intron | 45.0% | |
| AACTTCAAGCCTACCGAGAA+AGG | - | chr2_4:9655898-9655917 | Msa0314090:intron | 45.0% | |
| AGAGAGGGAAATGCCTTTCT+CGG | + | chr2_4:9655914-9655933 | None:intergenic | 45.0% | |
| TCAAGCGCTCAAGAAAGAGA+GGG | + | chr2_4:9655929-9655948 | None:intergenic | 45.0% | |
| TTCAAGCGCTCAAGAAAGAG+AGG | + | chr2_4:9655930-9655949 | None:intergenic | 45.0% | |
| !! | AGAACAAGTGCTGCTTCTTC+TGG | + | chr2_4:9656121-9656140 | None:intergenic | 45.0% |
| ! | GCTGGTTCTCGTATTTATGG+AGG | - | chr2_4:9656181-9656200 | Msa0314090:five_prime_UTR | 45.0% |
| TGGAGGAAACTCAAGAATGG+AGG | - | chr2_4:9656198-9656217 | Msa0314090:five_prime_UTR | 45.0% | |
| CAAGTTCAGTGGTGGTAAGA+AGG | + | chr2_4:9656264-9656283 | None:intergenic | 45.0% | |
| !! | GTACTGACTGTGTGAATGTG+TGG | - | chr2_4:9656542-9656561 | Msa0314090:intron | 45.0% |
| TTGAATGCAGATGGCTGCTT+TGG | - | chr2_4:9657694-9657713 | Msa0314090:five_prime_UTR | 45.0% | |
| TCTGGGTTCAGAACCTACTA+TGG | - | chr2_4:9657788-9657807 | Msa0314090:five_prime_UTR | 45.0% | |
| CTGAGAATGACACCATAGGA+TGG | - | chr2_4:9657867-9657886 | Msa0314090:five_prime_UTR | 45.0% | |
| ! | ATTCTGGAAGGTCAGAATGC+TGG | - | chr2_4:9657920-9657939 | Msa0314090:five_prime_UTR | 45.0% |
| AAGGTCAGAATGCTGGCATA+AGG | - | chr2_4:9657927-9657946 | Msa0314090:five_prime_UTR | 45.0% | |
| !! | TTATGTAATAAAAAAAAATA+TGG | - | chr2_4:9653248-9653267 | Msa0314090:three_prime_UTR | 5.0% |
| !!! | TATTATTTTACATTTTTTAA+AGG | + | chr2_4:9654206-9654225 | None:intergenic | 5.0% |
| !! | TTATTATTATTATTAATCAA+GGG | + | chr2_4:9656651-9656670 | None:intergenic | 5.0% |
| !! | ATTATTATTATTATTAATCA+AGG | + | chr2_4:9656652-9656671 | None:intergenic | 5.0% |
| !! | GGTGCTGCTAGAGGAATGTT+AGG | - | chr2_4:9653334-9653353 | Msa0314090:CDS | 50.0% |
| TGACAGCGGTTGATTGTCGT+TGG | - | chr2_4:9653410-9653429 | Msa0314090:CDS | 50.0% | |
| ! | TCATACCTCTGCAAGAGCAC+TGG | + | chr2_4:9653878-9653897 | None:intergenic | 50.0% |
| GATTTGCAATGCTGTGGCTG+TGG | - | chr2_4:9654633-9654652 | Msa0314090:intron | 50.0% | |
| ! | TGCAGAAGCAATTGGTAGCC+AGG | - | chr2_4:9654954-9654973 | Msa0314090:intron | 50.0% |
| ATATGCCGGTGTCTGACACT+TGG | - | chr2_4:9655383-9655402 | Msa0314090:CDS | 50.0% | |
| AGTTGCCAAGTGTCAGACAC+CGG | + | chr2_4:9655391-9655410 | None:intergenic | 50.0% | |
| TCCATGTGTGAGTTTGGAGG+AGG | - | chr2_4:9655858-9655877 | Msa0314090:intron | 50.0% | |
| ACCTCCTCCAAACTCACACA+TGG | + | chr2_4:9655862-9655881 | None:intergenic | 50.0% | |
| AGGGAAATGCCTTTCTCGGT+AGG | + | chr2_4:9655910-9655929 | None:intergenic | 50.0% | |
| ! | GCTGCTTCTTCTGGTGTCAA+TGG | + | chr2_4:9656112-9656131 | None:intergenic | 50.0% |
| GAAGCAGCACTTGTTCTAGC+AGG | - | chr2_4:9656124-9656143 | Msa0314090:five_prime_UTR | 50.0% | |
| GCACTTGTTCTAGCAGGTCT+TGG | - | chr2_4:9656130-9656149 | Msa0314090:five_prime_UTR | 50.0% | |
| GAATGGTGCAAGTTCAGTGG+TGG | + | chr2_4:9656272-9656291 | None:intergenic | 50.0% | |
| CCTGAATGGTGCAAGTTCAG+TGG | + | chr2_4:9656275-9656294 | None:intergenic | 50.0% | |
| CCACTGAACTTGCACCATTC+AGG | - | chr2_4:9656272-9656291 | Msa0314090:intron | 50.0% | |
| TTGGCTACCAGAGTCAGTCA+TGG | + | chr2_4:9657753-9657772 | None:intergenic | 50.0% | |
| GGGTTCAGAACCTACTATGG+CGG | - | chr2_4:9657791-9657810 | Msa0314090:five_prime_UTR | 50.0% | |
| TTCAGAACCTACTATGGCGG+CGG | - | chr2_4:9657794-9657813 | Msa0314090:five_prime_UTR | 50.0% | |
| !! | GAGGCTAGCCTTGTCTTGTT+CGG | + | chr2_4:9657839-9657858 | None:intergenic | 50.0% |
| CACATGCATTCTGGACACCT+AGG | + | chr2_4:9657980-9657999 | None:intergenic | 50.0% | |
| CAAGCAATGATCCACCGTCG+TGG | - | chr2_4:9653380-9653399 | Msa0314090:CDS | 55.0% | |
| ATGATCCACCGTCGTGGAAG+AGG | - | chr2_4:9653386-9653405 | Msa0314090:CDS | 55.0% | |
| GCTGTCATCCTCTTCCACGA+CGG | + | chr2_4:9653397-9653416 | None:intergenic | 55.0% | |
| GTCGTGGAAGAGGATGACAG+CGG | - | chr2_4:9653396-9653415 | Msa0314090:CDS | 55.0% | |
| GTCATCCTCTTCCACGACGG+TGG | + | chr2_4:9653394-9653413 | None:intergenic | 60.0% | |
| AGCATGACCGCCGCCATAGT+AGG | + | chr2_4:9657804-9657823 | None:intergenic | 60.0% | |
| GCGGTCATGCTCCTACCTTG+CGG | - | chr2_4:9657813-9657832 | Msa0314090:five_prime_UTR | 60.0% | |
| ! | GTCTTGTTCGGCCGCAAGGT+AGG | + | chr2_4:9657827-9657846 | None:intergenic | 60.0% |
| ! | CCTTGTCTTGTTCGGCCGCA+AGG | + | chr2_4:9657831-9657850 | None:intergenic | 60.0% |
| CCTTGCGGCCGAACAAGACA+AGG | - | chr2_4:9657828-9657847 | Msa0314090:five_prime_UTR | 60.0% | |
| GGCGTCCAGTGCTCTTGCAG+AGG | - | chr2_4:9653870-9653889 | Msa0314090:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 9653139 | 9658168 | 9653139 | ID=Msa0314090;Name=Msa0314090 |
| chr2_4 | mRNA | 9653139 | 9658168 | 9653139 | ID=Msa0314090-mRNA-1;Parent=Msa0314090;Name=Msa0314090-mRNA-1;_AED=0.13;_eAED=0.13;_QI=1113|1|1|1|0.88|0.9|10|156|298 |
| chr2_4 | exon | 9653139 | 9653603 | 9653139 | ID=Msa0314090-mRNA-1:exon:3736;Parent=Msa0314090-mRNA-1 |
| chr2_4 | exon | 9654998 | 9655238 | 9654998 | ID=Msa0314090-mRNA-1:exon:3735;Parent=Msa0314090-mRNA-1 |
| chr2_4 | exon | 9655349 | 9655677 | 9655349 | ID=Msa0314090-mRNA-1:exon:3734;Parent=Msa0314090-mRNA-1 |
| chr2_4 | exon | 9656097 | 9656240 | 9656097 | ID=Msa0314090-mRNA-1:exon:3733;Parent=Msa0314090-mRNA-1 |
| chr2_4 | exon | 9656332 | 9656452 | 9656332 | ID=Msa0314090-mRNA-1:exon:3732;Parent=Msa0314090-mRNA-1 |
| chr2_4 | exon | 9656585 | 9656682 | 9656585 | ID=Msa0314090-mRNA-1:exon:3731;Parent=Msa0314090-mRNA-1 |
| chr2_4 | exon | 9656849 | 9656919 | 9656849 | ID=Msa0314090-mRNA-1:exon:3730;Parent=Msa0314090-mRNA-1 |
| chr2_4 | exon | 9657201 | 9657300 | 9657201 | ID=Msa0314090-mRNA-1:exon:3729;Parent=Msa0314090-mRNA-1 |
| chr2_4 | exon | 9657416 | 9657502 | 9657416 | ID=Msa0314090-mRNA-1:exon:3728;Parent=Msa0314090-mRNA-1 |
| chr2_4 | exon | 9657659 | 9658168 | 9657659 | ID=Msa0314090-mRNA-1:exon:3727;Parent=Msa0314090-mRNA-1 |
| chr2_4 | five_prime_UTR | 9657659 | 9658168 | 9657659 | ID=Msa0314090-mRNA-1:five_prime_utr;Parent=Msa0314090-mRNA-1 |
| chr2_4 | five_prime_UTR | 9657416 | 9657502 | 9657416 | ID=Msa0314090-mRNA-1:five_prime_utr;Parent=Msa0314090-mRNA-1 |
| chr2_4 | five_prime_UTR | 9657201 | 9657300 | 9657201 | ID=Msa0314090-mRNA-1:five_prime_utr;Parent=Msa0314090-mRNA-1 |
| chr2_4 | five_prime_UTR | 9656849 | 9656919 | 9656849 | ID=Msa0314090-mRNA-1:five_prime_utr;Parent=Msa0314090-mRNA-1 |
| chr2_4 | five_prime_UTR | 9656585 | 9656682 | 9656585 | ID=Msa0314090-mRNA-1:five_prime_utr;Parent=Msa0314090-mRNA-1 |
| chr2_4 | five_prime_UTR | 9656332 | 9656452 | 9656332 | ID=Msa0314090-mRNA-1:five_prime_utr;Parent=Msa0314090-mRNA-1 |
| chr2_4 | five_prime_UTR | 9656115 | 9656240 | 9656115 | ID=Msa0314090-mRNA-1:five_prime_utr;Parent=Msa0314090-mRNA-1 |
| chr2_4 | CDS | 9656097 | 9656114 | 9656097 | ID=Msa0314090-mRNA-1:cds;Parent=Msa0314090-mRNA-1 |
| chr2_4 | CDS | 9655349 | 9655677 | 9655349 | ID=Msa0314090-mRNA-1:cds;Parent=Msa0314090-mRNA-1 |
| chr2_4 | CDS | 9654998 | 9655238 | 9654998 | ID=Msa0314090-mRNA-1:cds;Parent=Msa0314090-mRNA-1 |
| chr2_4 | CDS | 9653295 | 9653603 | 9653295 | ID=Msa0314090-mRNA-1:cds;Parent=Msa0314090-mRNA-1 |
| chr2_4 | three_prime_UTR | 9653139 | 9653294 | 9653139 | ID=Msa0314090-mRNA-1:three_prime_utr;Parent=Msa0314090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
