Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0193730 | XP_024632143.1 | 97.315 | 298 | 8 | 0 | 1 | 298 | 185 | 482 | 0.0 | 612 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0193730 | sp|F4HZX7|OFUT8_ARATH | 69.932 | 296 | 88 | 1 | 1 | 296 | 316 | 610 | 6.19e-145 | 423 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0193730 | A0A396J635 | 97.315 | 298 | 8 | 0 | 1 | 298 | 346 | 643 | 0.0 | 612 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0193730 | 0.800721 | 1.261921e-48 | -8.615850e-47 |
| Msa0108160 | Msa0193730 | 0.802855 | 4.602514e-49 | -8.615850e-47 |
| Msa0157290 | Msa0193730 | 0.800622 | 1.322190e-48 | -8.615850e-47 |
| Msa0193730 | Msa0227950 | 0.804976 | 1.667605e-49 | -8.615850e-47 |
| Msa0193730 | Msa0243600 | 0.823353 | 1.449695e-53 | -8.615850e-47 |
| Msa0193730 | Msa0282220 | 0.816405 | 5.623821e-52 | -8.615850e-47 |
| Msa0193730 | Msa0314090 | 0.969885 | 8.758667e-131 | -8.615850e-47 |
| Msa0193730 | Msa0337540 | 0.828072 | 1.101543e-54 | -8.615850e-47 |
| Msa0193730 | Msa0548620 | 0.837103 | 6.330884e-57 | -8.615850e-47 |
| Msa0193730 | Msa0629600 | 0.815921 | 7.216536e-52 | -8.615850e-47 |
| Msa0193730 | Msa0644980 | 0.810269 | 1.253764e-50 | -8.615850e-47 |
| Msa0193730 | Msa0650070 | 0.806641 | 7.452796e-50 | -8.615850e-47 |
| Msa0193730 | Msa0667370 | 0.817982 | 2.485964e-52 | -8.615850e-47 |
| Msa0193730 | Msa0684500 | 0.811203 | 7.872927e-51 | -8.615850e-47 |
| Msa0193730 | Msa1201470 | 0.812637 | 3.835950e-51 | -8.615850e-47 |
| Msa0193730 | Msa1436420 | 0.802426 | 5.641583e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0193730 | MtrunA17_Chr2g0284071 | 97.315 | 298 | 8 | 0 | 1 | 298 | 346 | 643 | 0.0 | 612 |
| Msa0193730 | MtrunA17_Chr4g0075311 | 59.866 | 299 | 116 | 3 | 1 | 296 | 295 | 592 | 6.06e-123 | 364 |
| Msa0193730 | MtrunA17_Chr5g0448581 | 38.127 | 299 | 143 | 6 | 1 | 297 | 243 | 501 | 6.71e-64 | 211 |
| Msa0193730 | MtrunA17_Chr3g0132951 | 37.209 | 301 | 166 | 10 | 1 | 296 | 234 | 516 | 1.73e-60 | 200 |
| Msa0193730 | MtrunA17_Chr1g0160781 | 37.838 | 296 | 154 | 6 | 2 | 295 | 279 | 546 | 6.67e-60 | 199 |
| Msa0193730 | MtrunA17_Chr4g0043911 | 37.458 | 299 | 157 | 7 | 2 | 298 | 280 | 550 | 1.41e-58 | 196 |
| Msa0193730 | MtrunA17_Chr5g0399311 | 39.098 | 266 | 123 | 6 | 1 | 266 | 250 | 476 | 1.49e-58 | 195 |
| Msa0193730 | MtrunA17_Chr4g0056061 | 35.452 | 299 | 150 | 7 | 1 | 297 | 234 | 491 | 1.02e-57 | 193 |
| Msa0193730 | MtrunA17_Chr5g0412251 | 37.874 | 301 | 164 | 10 | 1 | 296 | 220 | 502 | 7.61e-57 | 190 |
| Msa0193730 | MtrunA17_Chr3g0143821 | 38.346 | 266 | 126 | 5 | 1 | 266 | 236 | 463 | 1.07e-56 | 191 |
| Msa0193730 | MtrunA17_Chr3g0077321 | 36.455 | 299 | 160 | 7 | 1 | 297 | 276 | 546 | 4.35e-56 | 190 |
| Msa0193730 | MtrunA17_Chr5g0424241 | 37.705 | 305 | 153 | 9 | 1 | 297 | 286 | 561 | 1.19e-55 | 189 |
| Msa0193730 | MtrunA17_Chr3g0123521 | 36.093 | 302 | 153 | 11 | 1 | 296 | 281 | 548 | 1.97e-53 | 182 |
| Msa0193730 | MtrunA17_Chr4g0042711 | 36.513 | 304 | 148 | 8 | 1 | 296 | 224 | 490 | 6.92e-49 | 169 |
| Msa0193730 | MtrunA17_Chr5g0417871 | 36.304 | 303 | 152 | 7 | 1 | 297 | 212 | 479 | 4.83e-47 | 164 |
| Msa0193730 | MtrunA17_Chr3g0132371 | 36.000 | 250 | 123 | 5 | 1 | 250 | 265 | 477 | 1.15e-44 | 159 |
| Msa0193730 | MtrunA17_Chr6g0455571 | 35.448 | 268 | 136 | 7 | 1 | 267 | 243 | 474 | 1.73e-44 | 158 |
| Msa0193730 | MtrunA17_Chr5g0426591 | 36.220 | 254 | 125 | 6 | 1 | 254 | 238 | 454 | 2.73e-44 | 157 |
| Msa0193730 | MtrunA17_Chr3g0129981 | 33.013 | 312 | 155 | 10 | 1 | 295 | 237 | 511 | 1.57e-42 | 152 |
| Msa0193730 | MtrunA17_Chr4g0061781 | 35.688 | 269 | 132 | 8 | 2 | 267 | 245 | 475 | 6.23e-42 | 151 |
| Msa0193730 | MtrunA17_Chr2g0307971 | 36.330 | 267 | 129 | 8 | 4 | 267 | 246 | 474 | 1.14e-41 | 150 |
| Msa0193730 | MtrunA17_Chr4g0008451 | 30.645 | 310 | 160 | 10 | 1 | 297 | 356 | 623 | 1.03e-38 | 144 |
| Msa0193730 | MtrunA17_Chr5g0436321 | 29.032 | 310 | 165 | 9 | 1 | 297 | 285 | 552 | 5.36e-37 | 138 |
| Msa0193730 | MtrunA17_Chr1g0204121 | 31.104 | 299 | 153 | 10 | 6 | 296 | 222 | 475 | 1.21e-34 | 131 |
| Msa0193730 | MtrunA17_Chr4g0070551 | 28.664 | 307 | 168 | 10 | 1 | 296 | 352 | 618 | 1.08e-31 | 124 |
| Msa0193730 | MtrunA17_Chr4g0010511 | 30.201 | 298 | 168 | 9 | 1 | 295 | 356 | 616 | 4.36e-31 | 122 |
| Msa0193730 | MtrunA17_Chr3g0087291 | 30.897 | 301 | 162 | 12 | 1 | 295 | 296 | 556 | 1.65e-28 | 114 |
| Msa0193730 | MtrunA17_Chr1g0204141 | 29.836 | 305 | 156 | 12 | 4 | 296 | 220 | 478 | 3.17e-28 | 113 |
| Msa0193730 | MtrunA17_Chr7g0240241 | 44.538 | 119 | 58 | 2 | 68 | 183 | 8 | 121 | 4.03e-24 | 95.1 |
| Msa0193730 | MtrunA17_Chr4g0003561 | 33.133 | 166 | 98 | 6 | 68 | 232 | 235 | 388 | 4.67e-17 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0193730 | AT1G29200.3 | 69.932 | 296 | 88 | 1 | 1 | 296 | 126 | 420 | 7.01e-148 | 422 |
| Msa0193730 | AT1G29200.4 | 69.932 | 296 | 88 | 1 | 1 | 296 | 200 | 494 | 2.26e-147 | 423 |
| Msa0193730 | AT1G29200.1 | 69.932 | 296 | 88 | 1 | 1 | 296 | 200 | 494 | 2.26e-147 | 423 |
| Msa0193730 | AT1G29200.2 | 69.932 | 296 | 88 | 1 | 1 | 296 | 316 | 610 | 6.29e-146 | 423 |
| Msa0193730 | AT1G62330.1 | 56.811 | 301 | 125 | 2 | 1 | 297 | 352 | 651 | 2.61e-123 | 367 |
| Msa0193730 | AT1G11990.2 | 56.721 | 305 | 122 | 2 | 1 | 295 | 306 | 610 | 2.44e-109 | 330 |
| Msa0193730 | AT1G11990.1 | 55.932 | 295 | 103 | 2 | 1 | 295 | 321 | 588 | 1.03e-103 | 315 |
| Msa0193730 | AT2G01480.1 | 37.793 | 299 | 156 | 6 | 2 | 298 | 284 | 554 | 1.28e-61 | 205 |
| Msa0193730 | AT4G38390.1 | 38.951 | 267 | 125 | 5 | 1 | 267 | 249 | 477 | 2.65e-59 | 198 |
| Msa0193730 | AT1G14970.3 | 37.124 | 299 | 158 | 6 | 2 | 298 | 139 | 409 | 3.76e-59 | 194 |
| Msa0193730 | AT1G14970.2 | 37.124 | 299 | 158 | 6 | 2 | 298 | 165 | 435 | 6.44e-59 | 195 |
| Msa0193730 | AT1G14970.1 | 37.124 | 299 | 158 | 6 | 2 | 298 | 285 | 555 | 6.96e-58 | 195 |
| Msa0193730 | AT4G16650.2 | 37.970 | 266 | 126 | 6 | 1 | 266 | 248 | 474 | 3.86e-57 | 192 |
| Msa0193730 | AT4G16650.1 | 37.970 | 266 | 126 | 6 | 1 | 266 | 248 | 474 | 3.86e-57 | 192 |
| Msa0193730 | AT1G20550.1 | 37.500 | 264 | 127 | 5 | 3 | 266 | 235 | 460 | 9.48e-57 | 192 |
| Msa0193730 | AT5G65470.1 | 36.242 | 298 | 173 | 9 | 1 | 295 | 219 | 502 | 4.01e-55 | 186 |
| Msa0193730 | AT2G01480.2 | 39.147 | 258 | 130 | 4 | 2 | 259 | 284 | 514 | 1.19e-54 | 186 |
| Msa0193730 | AT1G76270.1 | 36.090 | 266 | 132 | 5 | 1 | 266 | 230 | 457 | 2.20e-54 | 186 |
| Msa0193730 | AT4G24530.1 | 37.248 | 298 | 170 | 9 | 1 | 296 | 235 | 517 | 4.18e-54 | 184 |
| Msa0193730 | AT3G26370.1 | 34.768 | 302 | 157 | 10 | 1 | 296 | 289 | 556 | 8.01e-53 | 181 |
| Msa0193730 | AT1G35510.1 | 33.779 | 299 | 168 | 7 | 1 | 297 | 288 | 558 | 3.36e-50 | 174 |
| Msa0193730 | AT1G38065.2 | 35.082 | 305 | 163 | 8 | 1 | 298 | 155 | 431 | 1.74e-48 | 168 |
| Msa0193730 | AT1G38065.1 | 35.082 | 305 | 163 | 8 | 1 | 298 | 165 | 441 | 2.22e-48 | 168 |
| Msa0193730 | AT1G14020.1 | 35.621 | 306 | 148 | 10 | 1 | 296 | 218 | 484 | 1.09e-47 | 166 |
| Msa0193730 | AT1G38131.1 | 35.082 | 305 | 163 | 8 | 1 | 298 | 284 | 560 | 1.63e-47 | 167 |
| Msa0193730 | AT2G03280.1 | 38.113 | 265 | 125 | 7 | 4 | 266 | 218 | 445 | 5.00e-47 | 164 |
| Msa0193730 | AT2G03280.2 | 38.113 | 265 | 125 | 7 | 4 | 266 | 245 | 472 | 1.07e-46 | 164 |
| Msa0193730 | AT5G15740.1 | 35.821 | 268 | 133 | 7 | 1 | 266 | 234 | 464 | 6.40e-45 | 159 |
| Msa0193730 | AT3G02250.1 | 35.075 | 268 | 135 | 7 | 1 | 266 | 234 | 464 | 2.16e-43 | 155 |
| Msa0193730 | AT5G64600.1 | 33.858 | 254 | 128 | 6 | 1 | 252 | 240 | 455 | 6.92e-40 | 146 |
| Msa0193730 | AT2G37980.1 | 29.677 | 310 | 163 | 10 | 1 | 297 | 350 | 617 | 4.70e-38 | 142 |
| Msa0193730 | AT1G22460.1 | 33.969 | 262 | 123 | 6 | 1 | 257 | 284 | 500 | 5.78e-38 | 141 |
| Msa0193730 | AT3G54100.1 | 30.225 | 311 | 160 | 10 | 1 | 297 | 346 | 613 | 2.73e-37 | 140 |
| Msa0193730 | AT3G07900.1 | 31.457 | 302 | 163 | 10 | 1 | 297 | 312 | 574 | 3.21e-36 | 137 |
| Msa0193730 | AT5G01100.1 | 31.970 | 269 | 144 | 7 | 2 | 268 | 341 | 572 | 1.17e-35 | 135 |
| Msa0193730 | AT5G35570.1 | 29.032 | 310 | 165 | 9 | 1 | 297 | 375 | 642 | 2.72e-34 | 132 |
| Msa0193730 | AT1G04910.1 | 30.033 | 303 | 155 | 10 | 6 | 298 | 222 | 477 | 2.34e-33 | 128 |
| Msa0193730 | AT2G44500.1 | 30.537 | 298 | 167 | 8 | 1 | 295 | 301 | 561 | 5.64e-33 | 127 |
| Msa0193730 | AT5G63390.1 | 30.667 | 300 | 168 | 9 | 1 | 297 | 288 | 550 | 1.63e-30 | 120 |
| Msa0193730 | AT1G52630.2 | 33.043 | 230 | 126 | 10 | 68 | 296 | 146 | 348 | 5.31e-20 | 89.4 |
| Msa0193730 | AT1G52630.1 | 33.478 | 230 | 125 | 10 | 68 | 296 | 234 | 436 | 9.05e-20 | 89.4 |
| Msa0193730 | AT3G03810.2 | 30.366 | 191 | 97 | 5 | 1 | 188 | 225 | 382 | 8.34e-17 | 81.3 |
| Msa0193730 | AT3G03810.1 | 30.366 | 191 | 97 | 5 | 1 | 188 | 225 | 382 | 8.34e-17 | 81.3 |
Find 143 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTGCTGTAAAGAAATTT+TGG | 0.146814 | 2_1:+9534351 | None:intergenic |
| TTGGCTGGTTCTCGTATTTA+TGG | 0.155059 | 2_1:-9532859 | Msa0193730:CDS |
| AAGACCAACTCCTGAATTTA+AGG | 0.157623 | 2_1:-9535724 | Msa0193730:five_prime_UTR |
| CATAAAGATGCCTGCTTATA+TGG | 0.167660 | 2_1:+9534990 | None:intergenic |
| CAACTTTCATCATTGGTATC+TGG | 0.171938 | 2_1:-9532168 | Msa0193730:CDS |
| CTCCAATGGATTTGAGAAAA+AGG | 0.174801 | 2_1:-9532960 | Msa0193730:CDS |
| TTCAAAGTACAATACTATTA+AGG | 0.188155 | 2_1:-9535562 | Msa0193730:five_prime_UTR |
| ATATGGTTCCGTCCATAATT+TGG | 0.206709 | 2_1:+9535007 | None:intergenic |
| CATATAAGCAGGCATCTTTA+TGG | 0.209772 | 2_1:-9534989 | Msa0193730:five_prime_UTR |
| TCCTATGCCTTCTGATATTC+AGG | 0.236744 | 2_1:-9533847 | Msa0193730:intron |
| AATTCAGGAGTTGGTCTTCT+TGG | 0.244745 | 2_1:+9535729 | None:intergenic |
| AGAACTATTGTTCTCATGTT+TGG | 0.257921 | 2_1:-9535513 | Msa0193730:five_prime_UTR |
| AGCAAGAGTCATCCAAATTA+TGG | 0.280319 | 2_1:-9535019 | Msa0193730:five_prime_UTR |
| TGTTCTCATGTTTGGATTGT+TGG | 0.286077 | 2_1:-9535505 | Msa0193730:five_prime_UTR |
| CTTATACATAAACACTTAAA+TGG | 0.305607 | 2_1:+9531788 | None:intergenic |
| CCAAAGGATTAGAAAATATA+GGG | 0.308578 | 2_1:-9533333 | Msa0193730:CDS |
| AATAGAGTTGTTCACTTCCT+TGG | 0.320528 | 2_1:-9533894 | Msa0193730:five_prime_UTR |
| AGAACAAGTGCTGCTTCTTC+TGG | 0.322296 | 2_1:+9532919 | None:intergenic |
| TGTTGTTTGCACATGCATTC+TGG | 0.323302 | 2_1:+9531952 | None:intergenic |
| TCAAAGTACAATACTATTAA+GGG | 0.325554 | 2_1:-9535561 | Msa0193730:five_prime_UTR |
| GAATAACAAGAGTTGCATTC+AGG | 0.325705 | 2_1:+9534373 | None:intergenic |
| GAAGCTAAGAAGTAGGTGAT+AGG | 0.331238 | 2_1:+9535886 | None:intergenic |
| GCCTATTCCATGTGTGAGTT+TGG | 0.339200 | 2_1:-9533185 | Msa0193730:CDS |
| CCACTGAACTTGCACCATTC+AGG | 0.347818 | 2_1:-9532765 | Msa0193730:CDS |
| TTGAATGCAGATGGCTGCTT+TGG | 0.348889 | 2_1:-9532244 | Msa0193730:intron |
| GATGATTGATGATAGTATAA+TGG | 0.351363 | 2_1:-9535766 | Msa0193730:five_prime_UTR |
| TCCAAAGGATTAGAAAATAT+AGG | 0.379659 | 2_1:-9533334 | Msa0193730:CDS |
| CTTCATGATCTTTCTTGTTG+TGG | 0.381286 | 2_1:+9533267 | None:intergenic |
| CTTAAGATTTGAAATAGATA+TGG | 0.390557 | 2_1:-9533210 | Msa0193730:CDS |
| GCACTTGTTCTAGCAGGTCT+TGG | 0.391956 | 2_1:-9532907 | Msa0193730:CDS |
| GTTCTCATGTTTGGATTGTT+GGG | 0.392639 | 2_1:-9535504 | Msa0193730:five_prime_UTR |
| AACTTTCATCATTGGTATCT+GGG | 0.393910 | 2_1:-9532167 | Msa0193730:CDS |
| ACAAGAAACTTACATTTACT+TGG | 0.395071 | 2_1:-9532878 | Msa0193730:CDS |
| ATGCATGTGCAAACAACATT+AGG | 0.400899 | 2_1:-9531947 | Msa0193730:exon |
| CTAGCAGCACCCTTAAATTC+AGG | 0.409298 | 2_1:+9535714 | None:intergenic |
| CCCGTCTGAAATAAAATCTC+TGG | 0.415268 | 2_1:-9534106 | Msa0193730:five_prime_UTR |
| GAAACTTACATTTACTTGGC+TGG | 0.416296 | 2_1:-9532874 | Msa0193730:CDS |
| GTACGATCGGCTTCTAAACT+TGG | 0.417488 | 2_1:-9535187 | Msa0193730:five_prime_UTR |
| AAATCATTCAAGTGAGCTTC+AGG | 0.417834 | 2_1:-9535409 | Msa0193730:intron |
| AAAAGTTTATATACCTGGAT+TGG | 0.424503 | 2_1:+9534938 | None:intergenic |
| CCAGTTTGGTGACATATATC+AGG | 0.426949 | 2_1:-9534181 | Msa0193730:five_prime_UTR |
| AATTTCTTTACAGCAATGTA+TGG | 0.429014 | 2_1:-9534347 | Msa0193730:five_prime_UTR |
| GGTGCTGCTAGAGGAATGTT+AGG | 0.433994 | 2_1:-9535702 | Msa0193730:five_prime_UTR |
| GAGGCTAGCCTTGTCTTGTT+CGG | 0.434377 | 2_1:+9532102 | None:intergenic |
| TCTGGGTTCAGAACCTACTA+TGG | 0.437017 | 2_1:-9532150 | Msa0193730:CDS |
| TATATGAGCAAGGACCAATA+TGG | 0.437110 | 2_1:+9535822 | None:intergenic |
| ATGATTGATGATAGTATAAT+GGG | 0.444622 | 2_1:-9535765 | Msa0193730:five_prime_UTR |
| TGCAGAAGCAATTGGTAGCC+AGG | 0.449547 | 2_1:-9534082 | Msa0193730:intron |
| AGGAGGTGAGAATGAGAGAA+AGG | 0.449737 | 2_1:-9533162 | Msa0193730:CDS |
| AACTTCAAGCCTACCGAGAA+AGG | 0.449792 | 2_1:-9533139 | Msa0193730:CDS |
| AATATTCTGAAGGACGATAT+CGG | 0.450509 | 2_1:-9534144 | Msa0193730:five_prime_UTR |
| TGGTAGCCAACTTTCATCAT+TGG | 0.450993 | 2_1:-9532175 | Msa0193730:CDS |
| AAGCTAAGAAGTAGGTGATA+GGG | 0.459370 | 2_1:+9535887 | None:intergenic |
| CTTGGATATGCAAATCGACT+TGG | 0.461392 | 2_1:-9533876 | Msa0193730:five_prime_UTR |
| CAAGTTCAGTGGTGGTAAGA+AGG | 0.463528 | 2_1:+9532776 | None:intergenic |
| CCTGATATATGTCACCAAAC+TGG | 0.467370 | 2_1:+9534181 | None:intergenic |
| TCGAAAACTTTGTTGCTACA+TGG | 0.467953 | 2_1:-9535600 | Msa0193730:five_prime_UTR |
| GCTGCTTCTTCTGGTGTCAA+TGG | 0.469728 | 2_1:+9532928 | None:intergenic |
| AGAGAGGGAAATGCCTTTCT+CGG | 0.470911 | 2_1:+9533126 | None:intergenic |
| TTATAGCTCTATTTCTCCAA+TGG | 0.472089 | 2_1:-9532974 | Msa0193730:intron |
| TTCAAAACCATTCCATCCTA+TGG | 0.473494 | 2_1:+9532059 | None:intergenic |
| TCCAAACTCACACATGGAAT+AGG | 0.475315 | 2_1:+9533184 | None:intergenic |
| CAATTGTTTCTCAGTGATGT+AGG | 0.476127 | 2_1:+9535221 | None:intergenic |
| AGACCAACTCCTGAATTTAA+GGG | 0.477088 | 2_1:-9535723 | Msa0193730:five_prime_UTR |
| TACATCTTAGTCAGTGCAAA+TGG | 0.478144 | 2_1:-9534625 | Msa0193730:five_prime_UTR |
| AATGCTGGCATAAGGAGTTA+TGG | 0.478737 | 2_1:-9532003 | Msa0193730:CDS |
| TATTCCATGTGTGAGTTTGG+AGG | 0.479641 | 2_1:-9533182 | Msa0193730:CDS |
| CAGATACCAATGATGAAAGT+TGG | 0.480381 | 2_1:+9532169 | None:intergenic |
| ATGATCCACCGTCGTGGAAG+AGG | 0.489666 | 2_1:-9535650 | Msa0193730:five_prime_UTR |
| ATGTTAGACACTCAGTTGCT+AGG | 0.493352 | 2_1:-9533299 | Msa0193730:CDS |
| ATTTAAGTGCCTATAGCATA+AGG | 0.493481 | 2_1:-9531816 | Msa0193730:three_prime_UTR |
| CCTTGTCTTGTTCGGCCGCA+AGG | 0.502900 | 2_1:+9532110 | None:intergenic |
| GAAGCAGCACTTGTTCTAGC+AGG | 0.503559 | 2_1:-9532913 | Msa0193730:CDS |
| AGCAAGGACCAATATGGACT+TGG | 0.504605 | 2_1:+9535828 | None:intergenic |
| GCACCCTTAAATTCAGGAGT+TGG | 0.505405 | 2_1:+9535720 | None:intergenic |
| TTCAAGCGCTCAAGAAAGAG+AGG | 0.508750 | 2_1:+9533110 | None:intergenic |
| AAGGTCAGAATGCTGGCATA+AGG | 0.510386 | 2_1:-9532011 | Msa0193730:CDS |
| ATGGTAAGACCTTATGCTAT+AGG | 0.514469 | 2_1:+9531807 | None:intergenic |
| TCATACCTCTGCAAGAGCAC+TGG | 0.517203 | 2_1:+9535161 | None:intergenic |
| TGGAAGTGAAGCTAAGAAGT+AGG | 0.517375 | 2_1:+9535879 | None:intergenic |
| GAATGATTTGAAGCTGCACT+TGG | 0.525414 | 2_1:+9535423 | None:intergenic |
| AGAAAAGTTCAAACCAATCC+AGG | 0.526293 | 2_1:-9534951 | Msa0193730:intron |
| TTGGGACAAACTTCAAAGCA+TGG | 0.532333 | 2_1:+9533384 | None:intergenic |
| AGCCGATCGTACATATGTAC+AGG | 0.533642 | 2_1:+9535198 | None:intergenic |
| TCTCTGGATGCAGAAGCAAT+TGG | 0.533798 | 2_1:-9534090 | Msa0193730:five_prime_UTR |
| GTCTTGTTCGGCCGCAAGGT+AGG | 0.536587 | 2_1:+9532114 | None:intergenic |
| TCTTTACAGCAATGTATGGA+AGG | 0.538127 | 2_1:-9534343 | Msa0193730:five_prime_UTR |
| TGTTAGACACTCAGTTGCTA+GGG | 0.540082 | 2_1:-9533298 | Msa0193730:CDS |
| TGGTCAAGTTTGTTAATGCA+AGG | 0.542542 | 2_1:+9531887 | None:intergenic |
| GAAGCATATATAGATATCCT+AGG | 0.543699 | 2_1:-9531978 | Msa0193730:CDS |
| AGATGAAAATAGAATCAAGA+AGG | 0.543945 | 2_1:+9535472 | None:intergenic |
| TGACAGCGGTTGATTGTCGT+TGG | 0.546207 | 2_1:-9535626 | Msa0193730:five_prime_UTR |
| ATTGGGATAGAGTCTATTGA+AGG | 0.548098 | 2_1:+9532816 | None:intergenic |
| AGGGAAATGCCTTTCTCGGT+AGG | 0.548278 | 2_1:+9533130 | None:intergenic |
| AGCATGACCGCCGCCATAGT+AGG | 0.548625 | 2_1:+9532137 | None:intergenic |
| GATAGTATAATGGGAAAACA+AGG | 0.553391 | 2_1:-9535756 | Msa0193730:five_prime_UTR |
| CTGGCTCTCTATTGATCCAA+AGG | 0.554908 | 2_1:-9533349 | Msa0193730:CDS |
| GAATTTAAGGGTGCTGCTAG+AGG | 0.557595 | 2_1:-9535711 | Msa0193730:five_prime_UTR |
| GGGAAATCTAAGAAAAGTAA+TGG | 0.559667 | 2_1:-9534649 | Msa0193730:five_prime_UTR |
| TTATGGAGGAAACTCAAGAA+TGG | 0.560261 | 2_1:-9532842 | Msa0193730:CDS |
| ATTCTGGAAGGTCAGAATGC+TGG | 0.561057 | 2_1:-9532018 | Msa0193730:CDS |
| AGATGCAGTTCTTGCAAAGG+AGG | 0.569131 | 2_1:-9533964 | Msa0193730:five_prime_UTR |
| TACAGATGCAGTTCTTGCAA+AGG | 0.569727 | 2_1:-9533967 | Msa0193730:five_prime_UTR |
| AATGACACCATAGGATGGAA+TGG | 0.570826 | 2_1:-9532066 | Msa0193730:CDS |
| ATGGACGGAACCATATAAGC+AGG | 0.571410 | 2_1:-9535000 | Msa0193730:five_prime_UTR |
| AAGATTTGAAATAGATATGG+TGG | 0.571650 | 2_1:-9533207 | Msa0193730:CDS |
| TTCAGAACCTACTATGGCGG+CGG | 0.576194 | 2_1:-9532144 | Msa0193730:CDS |
| GATTTGCAATGCTGTGGCTG+TGG | 0.576778 | 2_1:-9534403 | Msa0193730:five_prime_UTR |
| TTTGCTGAGAATGACACCAT+AGG | 0.579883 | 2_1:-9532075 | Msa0193730:CDS |
| TGCCTGTACATATGTACGAT+CGG | 0.580265 | 2_1:-9535200 | Msa0193730:five_prime_UTR |
| CTGAGAATGACACCATAGGA+TGG | 0.581020 | 2_1:-9532071 | Msa0193730:CDS |
| GTCATCCTCTTCCACGACGG+TGG | 0.586872 | 2_1:+9535645 | None:intergenic |
| GGCGTCCAGTGCTCTTGCAG+AGG | 0.591953 | 2_1:-9535166 | Msa0193730:intron |
| GCAATGTATGGAAGGATCCA+AGG | 0.593126 | 2_1:-9534335 | Msa0193730:intron |
| CCTTGCGGCCGAACAAGACA+AGG | 0.594618 | 2_1:-9532110 | Msa0193730:CDS |
| GCTGGTTCTCGTATTTATGG+AGG | 0.596017 | 2_1:-9532856 | Msa0193730:CDS |
| ACCTCCTCCAAACTCACACA+TGG | 0.600087 | 2_1:+9533178 | None:intergenic |
| GTATTTCATAAATATTCTGA+AGG | 0.610405 | 2_1:-9534154 | Msa0193730:five_prime_UTR |
| TCCATGTGTGAGTTTGGAGG+AGG | 0.612318 | 2_1:-9533179 | Msa0193730:CDS |
| TGAATGCAAATATATGAGCA+AGG | 0.612632 | 2_1:+9535812 | None:intergenic |
| CAAGTCGATTTGCATATCCA+AGG | 0.614488 | 2_1:+9533877 | None:intergenic |
| GGACGATATCGGTATTGTGA+AGG | 0.620369 | 2_1:-9534133 | Msa0193730:five_prime_UTR |
| CTTGTGACCTGAATATCAGA+AGG | 0.622679 | 2_1:+9533840 | None:intergenic |
| CACATGCATTCTGGACACCT+AGG | 0.625165 | 2_1:+9531961 | None:intergenic |
| TTGGCTACCAGAGTCAGTCA+TGG | 0.632066 | 2_1:+9532188 | None:intergenic |
| AAAGATCATGAAGCTGCGAA+AGG | 0.634216 | 2_1:-9533257 | Msa0193730:CDS |
| ATCTTAGTCAGTGCAAATGG+TGG | 0.642391 | 2_1:-9534622 | Msa0193730:five_prime_UTR |
| ACCTGAATATCAGAAGGCAT+AGG | 0.644694 | 2_1:+9533846 | None:intergenic |
| AGAGTCATCCAAATTATGGA+CGG | 0.649877 | 2_1:-9535015 | Msa0193730:five_prime_UTR |
| CTATCCCAATGTAGTCACAA+AGG | 0.650613 | 2_1:-9532803 | Msa0193730:CDS |
| TTTGATATAGTCAGCAACGG+TGG | 0.656737 | 2_1:+9533941 | None:intergenic |
| TCAAGCGCTCAAGAAAGAGA+GGG | 0.663510 | 2_1:+9533111 | None:intergenic |
| TGGAGGAAACTCAAGAATGG+AGG | 0.664757 | 2_1:-9532839 | Msa0193730:CDS |
| CAAGCAATGATCCACCGTCG+TGG | 0.665566 | 2_1:-9535656 | Msa0193730:five_prime_UTR |
| CCTGAATGGTGCAAGTTCAG+TGG | 0.684419 | 2_1:+9532765 | None:intergenic |
| ATAGTATAATGGGAAAACAA+GGG | 0.688885 | 2_1:-9535755 | Msa0193730:five_prime_UTR |
| GCTGTCATCCTCTTCCACGA+CGG | 0.692206 | 2_1:+9535642 | None:intergenic |
| AATACAGATTTGCAATGCTG+TGG | 0.698209 | 2_1:-9534409 | Msa0193730:five_prime_UTR |
| GGGTTCAGAACCTACTATGG+CGG | 0.710382 | 2_1:-9532147 | Msa0193730:CDS |
| TGTGTGATTTATGAACAAAG+TGG | 0.714704 | 2_1:+9531867 | None:intergenic |
| GAATGGTGCAAGTTCAGTGG+TGG | 0.720647 | 2_1:+9532768 | None:intergenic |
| GCGGTCATGCTCCTACCTTG+CGG | 0.733987 | 2_1:-9532125 | Msa0193730:CDS |
| GTCGTGGAAGAGGATGACAG+CGG | 0.806642 | 2_1:-9535640 | Msa0193730:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTATGTAATAAAAAAAATA+TGG | - | chr2_1:9531900-9531919 | Msa0193730:three_prime_UTR | 10.0% |
| !! | ATAATACTATTATGTAAAAT+AGG | - | chr2_1:9532872-9532891 | Msa0193730:CDS | 10.0% |
| !!! | ATTAATTTTTCATTATCACA+TGG | - | chr2_1:9533401-9533420 | Msa0193730:CDS | 15.0% |
| !! | GGATACATTTATATTTATAT+AGG | - | chr2_1:9534241-9534260 | Msa0193730:intron | 15.0% |
| !!! | ATGATTGATGATAGTATAAT+GGG | - | chr2_1:9531923-9531942 | Msa0193730:three_prime_UTR | 20.0% |
| !! | TTCAAAGTACAATACTATTA+AGG | - | chr2_1:9532126-9532145 | Msa0193730:CDS | 20.0% |
| !! | TCAAAGTACAATACTATTAA+GGG | - | chr2_1:9532127-9532146 | Msa0193730:CDS | 20.0% |
| !! | TCCATATTATTGTAAGTTAT+AGG | - | chr2_1:9532315-9532334 | Msa0193730:intron | 20.0% |
| !! | ACCTATAACTTACAATAATA+TGG | + | chr2_1:9532319-9532338 | None:intergenic | 20.0% |
| !! | GCAAAAATCAATGAAAAATA+TGG | + | chr2_1:9532395-9532414 | None:intergenic | 20.0% |
| !!! | TTTCATTGATTTTTGCAAAT+TGG | - | chr2_1:9532399-9532418 | Msa0193730:intron | 20.0% |
| !!! | TAACATACTTTTTAATGAGA+AGG | - | chr2_1:9532435-9532454 | Msa0193730:intron | 20.0% |
| !! | ATAAGAAAAGTTTATATACC+TGG | + | chr2_1:9532758-9532777 | None:intergenic | 20.0% |
| !! | TTACATCATTTCTCATATTA+AGG | - | chr2_1:9533130-9533149 | Msa0193730:CDS | 20.0% |
| !! | CTTTATGAAATTTCCAATAA+TGG | - | chr2_1:9533234-9533253 | Msa0193730:CDS | 20.0% |
| !! | ATATTAAACATAGTATACCT+TGG | + | chr2_1:9533373-9533392 | None:intergenic | 20.0% |
| !! | GTATTTCATAAATATTCTGA+AGG | - | chr2_1:9533534-9533553 | Msa0193730:intron | 20.0% |
| !! | TTGTTATAAAGTACATTGAT+TGG | + | chr2_1:9533649-9533668 | None:intergenic | 20.0% |
| !!! | TAGTATTTTAGTGTACTATA+AGG | - | chr2_1:9534194-9534213 | Msa0193730:intron | 20.0% |
| !!! | CTTAAGATTTGAAATAGATA+TGG | - | chr2_1:9534478-9534497 | Msa0193730:intron | 20.0% |
| !!! | TTTTGTTGTTGATATTTATG+TGG | - | chr2_1:9534674-9534693 | Msa0193730:intron | 20.0% |
| !! | AAAATACTGAGCTTAAATTA+TGG | - | chr2_1:9535139-9535158 | Msa0193730:intron | 20.0% |
| !! | ATTGTTAAATTAGGATCAAA+CGG | + | chr2_1:9535166-9535185 | None:intergenic | 20.0% |
| !! | GTAATATGGAAATTAATCAA+GGG | + | chr2_1:9535303-9535322 | None:intergenic | 20.0% |
| !! | AGTAATATGGAAATTAATCA+AGG | + | chr2_1:9535304-9535323 | None:intergenic | 20.0% |
| !!! | TAGAGTTTTGTTGTATGAAT+TGG | + | chr2_1:9531832-9531851 | None:intergenic | 25.0% |
| !! | GATGATTGATGATAGTATAA+TGG | - | chr2_1:9531922-9531941 | Msa0193730:three_prime_UTR | 25.0% |
| !! | ATAGTATAATGGGAAAACAA+GGG | - | chr2_1:9531933-9531952 | Msa0193730:exon | 25.0% |
| !! | ACTATTAAGGGATTTTATGT+TGG | - | chr2_1:9532139-9532158 | Msa0193730:CDS | 25.0% |
| ! | AGATGAAAATAGAATCAAGA+AGG | + | chr2_1:9532219-9532238 | None:intergenic | 25.0% |
| !!! | GCATGAATTTTAGAAGTATT+TGG | + | chr2_1:9532373-9532392 | None:intergenic | 25.0% |
| ! | AAAAGTTTATATACCTGGAT+TGG | + | chr2_1:9532753-9532772 | None:intergenic | 25.0% |
| !!! | TGTAAAATAGGCTAGTTTTA+TGG | - | chr2_1:9532884-9532903 | Msa0193730:CDS | 25.0% |
| ! | TTATACAGTCAAGATCATAT+AGG | + | chr2_1:9533211-9533230 | None:intergenic | 25.0% |
| !! | ACATTGCTGTAAAGAAATTT+TGG | + | chr2_1:9533340-9533359 | None:intergenic | 25.0% |
| ! | AATTTCTTTACAGCAATGTA+TGG | - | chr2_1:9533341-9533360 | Msa0193730:CDS | 25.0% |
| !!! | AATTTTGATATAGTCAGCAA+CGG | + | chr2_1:9533753-9533772 | None:intergenic | 25.0% |
| !!! | ACTCTATTTTTCAAAAGAAG+AGG | + | chr2_1:9533782-9533801 | None:intergenic | 25.0% |
| ! | TATTCAAAACTAGACAAATG+AGG | + | chr2_1:9533878-9533897 | None:intergenic | 25.0% |
| !! | GATATTGACTATTGAATGTA+AGG | + | chr2_1:9533925-9533944 | None:intergenic | 25.0% |
| !! | TTAGTGTACTATAAGGTTTT+AGG | - | chr2_1:9534201-9534220 | Msa0193730:intron | 25.0% |
| !! | TAGTGTACTATAAGGTTTTA+GGG | - | chr2_1:9534202-9534221 | Msa0193730:intron | 25.0% |
| ! | TCCAAAGGATTAGAAAATAT+AGG | - | chr2_1:9534354-9534373 | Msa0193730:five_prime_UTR | 25.0% |
| ! | CCAAAGGATTAGAAAATATA+GGG | - | chr2_1:9534355-9534374 | Msa0193730:five_prime_UTR | 25.0% |
| !! | AAGATTTGAAATAGATATGG+TGG | - | chr2_1:9534481-9534500 | Msa0193730:intron | 25.0% |
| ! | TATCAATCAAAAACATTGTG+CGG | + | chr2_1:9534640-9534659 | None:intergenic | 25.0% |
| ! | TATCAACAACAAAATTAACG+AGG | + | chr2_1:9534668-9534687 | None:intergenic | 25.0% |
| ! | ACAAGAAACTTACATTTACT+TGG | - | chr2_1:9534810-9534829 | Msa0193730:intron | 25.0% |
| !!! | AATTAGTTTTACTGCATCTT+TGG | - | chr2_1:9534968-9534987 | Msa0193730:five_prime_UTR | 25.0% |
| ! | ATTCTCATTTGCATCTTAAA+AGG | - | chr2_1:9534991-9535010 | Msa0193730:five_prime_UTR | 25.0% |
| ! | TTCTCATTTGCATCTTAAAA+GGG | - | chr2_1:9534992-9535011 | Msa0193730:five_prime_UTR | 25.0% |
| ! | GAACATATTTGTATATGTTG+CGG | + | chr2_1:9535228-9535247 | None:intergenic | 25.0% |
| TGAATGCAAATATATGAGCA+AGG | + | chr2_1:9531879-9531898 | None:intergenic | 30.0% | |
| ! | GATAGTATAATGGGAAAACA+AGG | - | chr2_1:9531932-9531951 | Msa0193730:exon | 30.0% |
| AGAACTATTGTTCTCATGTT+TGG | - | chr2_1:9532175-9532194 | Msa0193730:CDS | 30.0% | |
| ! | ACTTTTCTTATGCTTTTAGC+TGG | - | chr2_1:9532767-9532786 | Msa0193730:CDS | 30.0% |
| ! | TACATGTTAGTTTCTACCAT+TGG | - | chr2_1:9532936-9532955 | Msa0193730:CDS | 30.0% |
| ! | CTGTTTTACAATTTGTGACA+GGG | - | chr2_1:9533019-9533038 | Msa0193730:intron | 30.0% |
| GGGAAATCTAAGAAAAGTAA+TGG | - | chr2_1:9533039-9533058 | Msa0193730:intron | 30.0% | |
| ! | AGTCTTATCACTTCCATTAT+TGG | + | chr2_1:9533250-9533269 | None:intergenic | 30.0% |
| AAAAAAAATTGCAGCCAGTT+TGG | - | chr2_1:9533493-9533512 | Msa0193730:intron | 30.0% | |
| ! | AATATTCTGAAGGACGATAT+CGG | - | chr2_1:9533544-9533563 | Msa0193730:intron | 30.0% |
| !! | TCCAGAGATTTTATTTCAGA+CGG | + | chr2_1:9533586-9533605 | None:intergenic | 30.0% |
| GATGTATAAGATCATAAACC+TGG | + | chr2_1:9533627-9533646 | None:intergenic | 30.0% | |
| ! | CATCTGTAATCTAAAATGCA+AGG | + | chr2_1:9533709-9533728 | None:intergenic | 30.0% |
| ACAGCATCAAATCTTTAGAT+TGG | + | chr2_1:9534067-9534086 | None:intergenic | 30.0% | |
| ! | CCCTATATTTTCTAATCCTT+TGG | + | chr2_1:9534358-9534377 | None:intergenic | 30.0% |
| ! | TTATAGCTCTATTTCTCCAA+TGG | - | chr2_1:9534714-9534733 | Msa0193730:intron | 30.0% |
| ! | TCCAATGGATTTGAGAAAAA+GGG | - | chr2_1:9534729-9534748 | Msa0193730:intron | 30.0% |
| ! | TTTTCCTTTGTGACTACATT+GGG | + | chr2_1:9534892-9534911 | None:intergenic | 30.0% |
| TGAGATGAAAAATTCCTGAA+TGG | + | chr2_1:9534940-9534959 | None:intergenic | 30.0% | |
| ! | ATTCAGGAATTTTTCATCTC+AGG | - | chr2_1:9534939-9534958 | Msa0193730:intron | 30.0% |
| AATTCACGTAGTTAGCATAT+CGG | - | chr2_1:9535064-9535083 | Msa0193730:intron | 30.0% | |
| ACATCGGTGATTGTTAAATT+AGG | + | chr2_1:9535175-9535194 | None:intergenic | 30.0% | |
| !! | AGAATTGATTTGAATGCAGA+TGG | - | chr2_1:9535435-9535454 | Msa0193730:five_prime_UTR | 30.0% |
| AACTTTCATCATTGGTATCT+GGG | - | chr2_1:9535521-9535540 | Msa0193730:five_prime_UTR | 30.0% | |
| CAGAGTAAAAAAGATGATTC+TGG | - | chr2_1:9535654-9535673 | Msa0193730:five_prime_UTR | 30.0% | |
| GTAAAAAAGATGATTCTGGA+AGG | - | chr2_1:9535658-9535677 | Msa0193730:five_prime_UTR | 30.0% | |
| GAAGCATATATAGATATCCT+AGG | - | chr2_1:9535710-9535729 | Msa0193730:five_prime_UTR | 30.0% | |
| TGTGTGATTTATGAACAAAG+TGG | + | chr2_1:9535824-9535843 | None:intergenic | 30.0% | |
| ATTTAAGTGCCTATAGCATA+AGG | - | chr2_1:9535872-9535891 | Msa0193730:five_prime_UTR | 30.0% | |
| AAGCTAAGAAGTAGGTGATA+GGG | + | chr2_1:9531804-9531823 | None:intergenic | 35.0% | |
| ! | CTCTTTTTCCAAGTCCATAT+TGG | - | chr2_1:9531852-9531871 | Msa0193730:three_prime_UTR | 35.0% |
| TATATGAGCAAGGACCAATA+TGG | + | chr2_1:9531869-9531888 | None:intergenic | 35.0% | |
| AAGACCAACTCCTGAATTTA+AGG | - | chr2_1:9531964-9531983 | Msa0193730:CDS | 35.0% | |
| AGACCAACTCCTGAATTTAA+GGG | - | chr2_1:9531965-9531984 | Msa0193730:CDS | 35.0% | |
| TCGAAAACTTTGTTGCTACA+TGG | - | chr2_1:9532088-9532107 | Msa0193730:CDS | 35.0% | |
| TGTTCTCATGTTTGGATTGT+TGG | - | chr2_1:9532183-9532202 | Msa0193730:CDS | 35.0% | |
| GTTCTCATGTTTGGATTGTT+GGG | - | chr2_1:9532184-9532203 | Msa0193730:CDS | 35.0% | |
| AAATCATTCAAGTGAGCTTC+AGG | - | chr2_1:9532279-9532298 | Msa0193730:intron | 35.0% | |
| ! | CAATTGTTTCTCAGTGATGT+AGG | + | chr2_1:9532470-9532489 | None:intergenic | 35.0% |
| AGCAAGAGTCATCCAAATTA+TGG | - | chr2_1:9532669-9532688 | Msa0193730:intron | 35.0% | |
| AGAGTCATCCAAATTATGGA+CGG | - | chr2_1:9532673-9532692 | Msa0193730:intron | 35.0% | |
| ATATGGTTCCGTCCATAATT+TGG | + | chr2_1:9532684-9532703 | None:intergenic | 35.0% | |
| CATAAAGATGCCTGCTTATA+TGG | + | chr2_1:9532701-9532720 | None:intergenic | 35.0% | |
| CATATAAGCAGGCATCTTTA+TGG | - | chr2_1:9532699-9532718 | Msa0193730:intron | 35.0% | |
| ! | TGAACTTTTCTTTGTGCACA+AGG | + | chr2_1:9532728-9532747 | None:intergenic | 35.0% |
| AGAAAAGTTCAAACCAATCC+AGG | - | chr2_1:9532737-9532756 | Msa0193730:intron | 35.0% | |
| GTAAAATAGTCGTGTACCAA+TGG | + | chr2_1:9532955-9532974 | None:intergenic | 35.0% | |
| CCTGTCACAAATTGTAAAAC+AGG | + | chr2_1:9533021-9533040 | None:intergenic | 35.0% | |
| ! | CCTGTTTTACAATTTGTGAC+AGG | - | chr2_1:9533018-9533037 | Msa0193730:intron | 35.0% |
| TACATCTTAGTCAGTGCAAA+TGG | - | chr2_1:9533063-9533082 | Msa0193730:intron | 35.0% | |
| AGTCAAGATCATATAGGATG+AGG | + | chr2_1:9533205-9533224 | None:intergenic | 35.0% | |
| AATACAGATTTGCAATGCTG+TGG | - | chr2_1:9533279-9533298 | Msa0193730:CDS | 35.0% | |
| GAATAACAAGAGTTGCATTC+AGG | + | chr2_1:9533318-9533337 | None:intergenic | 35.0% | |
| TCTTTACAGCAATGTATGGA+AGG | - | chr2_1:9533345-9533364 | Msa0193730:CDS | 35.0% | |
| !! | CCAGAGATTTTATTTCAGAC+GGG | + | chr2_1:9533585-9533604 | None:intergenic | 35.0% |
| AATAGAGTTGTTCACTTCCT+TGG | - | chr2_1:9533794-9533813 | Msa0193730:intron | 35.0% | |
| CTGAATGTAACTACATATGC+CGG | - | chr2_1:9534021-9534040 | Msa0193730:intron | 35.0% | |
| TCCTAGTCAATAAAGACACT+TGG | - | chr2_1:9534123-9534142 | Msa0193730:five_prime_UTR | 35.0% | |
| ! | TCCAAGTGTCTTTATTGACT+AGG | + | chr2_1:9534127-9534146 | None:intergenic | 35.0% |
| CACTTGGATAGTTAAGTACT+TGG | - | chr2_1:9534139-9534158 | Msa0193730:five_prime_UTR | 35.0% | |
| !! | AGGTATTGAAATGATTGCAG+AGG | - | chr2_1:9534261-9534280 | Msa0193730:intron | 35.0% |
| !!! | AGCCAGCTTGTTGAATTTTT+GGG | + | chr2_1:9534325-9534344 | None:intergenic | 35.0% |
| CTTCATGATCTTTCTTGTTG+TGG | + | chr2_1:9534424-9534443 | None:intergenic | 35.0% | |
| ! | CTCCAATGGATTTGAGAAAA+AGG | - | chr2_1:9534728-9534747 | Msa0193730:intron | 35.0% |
| ! | CCAATGGATTTGAGAAAAAG+GGG | - | chr2_1:9534730-9534749 | Msa0193730:intron | 35.0% |
| GAAACTTACATTTACTTGGC+TGG | - | chr2_1:9534814-9534833 | Msa0193730:intron | 35.0% | |
| TTATGGAGGAAACTCAAGAA+TGG | - | chr2_1:9534846-9534865 | Msa0193730:intron | 35.0% | |
| ATTGGGATAGAGTCTATTGA+AGG | + | chr2_1:9534875-9534894 | None:intergenic | 35.0% | |
| ! | GTTTTCCTTTGTGACTACAT+TGG | + | chr2_1:9534893-9534912 | None:intergenic | 35.0% |
| ! | GGAATTTTTCATCTCAGGTA+TGG | - | chr2_1:9534944-9534963 | Msa0193730:intron | 35.0% |
| AGTCATGTTCTTGACAGATT+TGG | - | chr2_1:9535025-9535044 | Msa0193730:five_prime_UTR | 35.0% | |
| CTAACTACGTGAATTTGTGA+CGG | + | chr2_1:9535059-9535078 | None:intergenic | 35.0% | |
| ATCCTACTAGATTTCATCGA+AGG | - | chr2_1:9535256-9535275 | Msa0193730:intron | 35.0% | |
| CAGATACCAATGATGAAAGT+TGG | + | chr2_1:9535522-9535541 | None:intergenic | 35.0% | |
| CAACTTTCATCATTGGTATC+TGG | - | chr2_1:9535520-9535539 | Msa0193730:five_prime_UTR | 35.0% | |
| GTCATTCTCAGCAAAAATTG+AGG | + | chr2_1:9535608-9535627 | None:intergenic | 35.0% | |
| TTCAAAACCATTCCATCCTA+TGG | + | chr2_1:9535632-9535651 | None:intergenic | 35.0% | |
| ATGCATGTGCAAACAACATT+AGG | - | chr2_1:9535741-9535760 | Msa0193730:five_prime_UTR | 35.0% | |
| !! | TGGTCAAGTTTGTTAATGCA+AGG | + | chr2_1:9535804-9535823 | None:intergenic | 35.0% |
| ATGGTAAGACCTTATGCTAT+AGG | + | chr2_1:9535884-9535903 | None:intergenic | 35.0% | |
| GAAGCTAAGAAGTAGGTGAT+AGG | + | chr2_1:9531805-9531824 | None:intergenic | 40.0% | |
| TGGAAGTGAAGCTAAGAAGT+AGG | + | chr2_1:9531812-9531831 | None:intergenic | 40.0% | |
| !! | AATTCAGGAGTTGGTCTTCT+TGG | + | chr2_1:9531962-9531981 | None:intergenic | 40.0% |
| ! | GAATGATTTGAAGCTGCACT+TGG | + | chr2_1:9532268-9532287 | None:intergenic | 40.0% |
| TGCCTGTACATATGTACGAT+CGG | - | chr2_1:9532488-9532507 | Msa0193730:intron | 40.0% | |
| GCATGCATCAATCTGAAAGT+TGG | + | chr2_1:9532554-9532573 | None:intergenic | 40.0% | |
| ATCTTAGTCAGTGCAAATGG+TGG | - | chr2_1:9533066-9533085 | Msa0193730:intron | 40.0% | |
| CAACGAGTTGCTGTAAGTAT+TGG | - | chr2_1:9533099-9533118 | Msa0193730:intron | 40.0% | |
| CCTGATATATGTCACCAAAC+TGG | + | chr2_1:9533510-9533529 | None:intergenic | 40.0% | |
| ! | CCAGTTTGGTGACATATATC+AGG | - | chr2_1:9533507-9533526 | Msa0193730:intron | 40.0% |
| ! | CCCGTCTGAAATAAAATCTC+TGG | - | chr2_1:9533582-9533601 | Msa0193730:intron | 40.0% |
| TACAGATGCAGTTCTTGCAA+AGG | - | chr2_1:9533721-9533740 | Msa0193730:intron | 40.0% | |
| TTTGATATAGTCAGCAACGG+TGG | + | chr2_1:9533750-9533769 | None:intergenic | 40.0% | |
| !! | CAAGTCGATTTGCATATCCA+AGG | + | chr2_1:9533814-9533833 | None:intergenic | 40.0% |
| CTTGGATATGCAAATCGACT+TGG | - | chr2_1:9533812-9533831 | Msa0193730:intron | 40.0% | |
| TCCTATGCCTTCTGATATTC+AGG | - | chr2_1:9533841-9533860 | Msa0193730:intron | 40.0% | |
| ! | ACCTGAATATCAGAAGGCAT+AGG | + | chr2_1:9533845-9533864 | None:intergenic | 40.0% |
| CTTGTGACCTGAATATCAGA+AGG | + | chr2_1:9533851-9533870 | None:intergenic | 40.0% | |
| AAGGCAAACTTCTGACAAAC+TGG | + | chr2_1:9533906-9533925 | None:intergenic | 40.0% | |
| TAGGGATCTCACTTGCAATT+AGG | - | chr2_1:9534220-9534239 | Msa0193730:intron | 40.0% | |
| TTGGGACAAACTTCAAAGCA+TGG | + | chr2_1:9534307-9534326 | None:intergenic | 40.0% | |
| GTCCCAAAAATTCAACAAGC+TGG | - | chr2_1:9534320-9534339 | Msa0193730:intron | 40.0% | |
| !!! | GAGCCAGCTTGTTGAATTTT+TGG | + | chr2_1:9534326-9534345 | None:intergenic | 40.0% |
| ATGTTAGACACTCAGTTGCT+AGG | - | chr2_1:9534389-9534408 | Msa0193730:five_prime_UTR | 40.0% | |
| TGTTAGACACTCAGTTGCTA+GGG | - | chr2_1:9534390-9534409 | Msa0193730:five_prime_UTR | 40.0% | |
| AAAGATCATGAAGCTGCGAA+AGG | - | chr2_1:9534431-9534450 | Msa0193730:intron | 40.0% | |
| TCCAAACTCACACATGGAAT+AGG | + | chr2_1:9534507-9534526 | None:intergenic | 40.0% | |
| TATTCCATGTGTGAGTTTGG+AGG | - | chr2_1:9534506-9534525 | Msa0193730:intron | 40.0% | |
| ! | CCCCTTTTTCTCAAATCCAT+TGG | + | chr2_1:9534733-9534752 | None:intergenic | 40.0% |
| ! | TTGGCTGGTTCTCGTATTTA+TGG | - | chr2_1:9534829-9534848 | Msa0193730:intron | 40.0% |
| CTATCCCAATGTAGTCACAA+AGG | - | chr2_1:9534885-9534904 | Msa0193730:intron | 40.0% | |
| GTCCTTCGATGAAATCTAGT+AGG | + | chr2_1:9535261-9535280 | None:intergenic | 40.0% | |
| !! | GTATTTTCCATGACTGACTC+TGG | - | chr2_1:9535493-9535512 | Msa0193730:five_prime_UTR | 40.0% |
| TGGTAGCCAACTTTCATCAT+TGG | - | chr2_1:9535513-9535532 | Msa0193730:five_prime_UTR | 40.0% | |
| TTTGCTGAGAATGACACCAT+AGG | - | chr2_1:9535613-9535632 | Msa0193730:five_prime_UTR | 40.0% | |
| AATGACACCATAGGATGGAA+TGG | - | chr2_1:9535622-9535641 | Msa0193730:five_prime_UTR | 40.0% | |
| AATGCTGGCATAAGGAGTTA+TGG | - | chr2_1:9535685-9535704 | Msa0193730:five_prime_UTR | 40.0% | |
| ! | TGTTGTTTGCACATGCATTC+TGG | + | chr2_1:9535739-9535758 | None:intergenic | 40.0% |
| AGCAAGGACCAATATGGACT+TGG | + | chr2_1:9531863-9531882 | None:intergenic | 45.0% | |
| GCACCCTTAAATTCAGGAGT+TGG | + | chr2_1:9531971-9531990 | None:intergenic | 45.0% | |
| CTAGCAGCACCCTTAAATTC+AGG | + | chr2_1:9531977-9531996 | None:intergenic | 45.0% | |
| !! | GAATTTAAGGGTGCTGCTAG+AGG | - | chr2_1:9531977-9531996 | Msa0193730:CDS | 45.0% |
| AGCCGATCGTACATATGTAC+AGG | + | chr2_1:9532493-9532512 | None:intergenic | 45.0% | |
| ! | GTACGATCGGCTTCTAAACT+TGG | - | chr2_1:9532501-9532520 | Msa0193730:intron | 45.0% |
| ATGGACGGAACCATATAAGC+AGG | - | chr2_1:9532688-9532707 | Msa0193730:intron | 45.0% | |
| GCAATGTATGGAAGGATCCA+AGG | - | chr2_1:9533353-9533372 | Msa0193730:CDS | 45.0% | |
| GGACGATATCGGTATTGTGA+AGG | - | chr2_1:9533555-9533574 | Msa0193730:intron | 45.0% | |
| TCTCTGGATGCAGAAGCAAT+TGG | - | chr2_1:9533598-9533617 | Msa0193730:intron | 45.0% | |
| AGATGCAGTTCTTGCAAAGG+AGG | - | chr2_1:9533724-9533743 | Msa0193730:intron | 45.0% | |
| ! | CTGGCTCTCTATTGATCCAA+AGG | - | chr2_1:9534339-9534358 | Msa0193730:five_prime_UTR | 45.0% |
| GCCTATTCCATGTGTGAGTT+TGG | - | chr2_1:9534503-9534522 | Msa0193730:intron | 45.0% | |
| AGGAGGTGAGAATGAGAGAA+AGG | - | chr2_1:9534526-9534545 | Msa0193730:intron | 45.0% | |
| AACTTCAAGCCTACCGAGAA+AGG | - | chr2_1:9534549-9534568 | Msa0193730:intron | 45.0% | |
| AGAGAGGGAAATGCCTTTCT+CGG | + | chr2_1:9534565-9534584 | None:intergenic | 45.0% | |
| TCAAGCGCTCAAGAAAGAGA+GGG | + | chr2_1:9534580-9534599 | None:intergenic | 45.0% | |
| TTCAAGCGCTCAAGAAAGAG+AGG | + | chr2_1:9534581-9534600 | None:intergenic | 45.0% | |
| !! | AGAACAAGTGCTGCTTCTTC+TGG | + | chr2_1:9534772-9534791 | None:intergenic | 45.0% |
| ! | GCTGGTTCTCGTATTTATGG+AGG | - | chr2_1:9534832-9534851 | Msa0193730:intron | 45.0% |
| TGGAGGAAACTCAAGAATGG+AGG | - | chr2_1:9534849-9534868 | Msa0193730:intron | 45.0% | |
| CAAGTTCAGTGGTGGTAAGA+AGG | + | chr2_1:9534915-9534934 | None:intergenic | 45.0% | |
| CATTCACGCAGTCAGTACAT+CGG | + | chr2_1:9535191-9535210 | None:intergenic | 45.0% | |
| TTGAATGCAGATGGCTGCTT+TGG | - | chr2_1:9535444-9535463 | Msa0193730:five_prime_UTR | 45.0% | |
| TCTGGGTTCAGAACCTACTA+TGG | - | chr2_1:9535538-9535557 | Msa0193730:five_prime_UTR | 45.0% | |
| CTGAGAATGACACCATAGGA+TGG | - | chr2_1:9535617-9535636 | Msa0193730:five_prime_UTR | 45.0% | |
| ! | ATTCTGGAAGGTCAGAATGC+TGG | - | chr2_1:9535670-9535689 | Msa0193730:five_prime_UTR | 45.0% |
| AAGGTCAGAATGCTGGCATA+AGG | - | chr2_1:9535677-9535696 | Msa0193730:five_prime_UTR | 45.0% | |
| !!! | TATTATTTTACATTTTTTAA+AGG | + | chr2_1:9532858-9532877 | None:intergenic | 5.0% |
| !! | TATTATTATTAAAAGTAATA+TGG | + | chr2_1:9535317-9535336 | None:intergenic | 5.0% |
| !! | GGTGCTGCTAGAGGAATGTT+AGG | - | chr2_1:9531986-9532005 | Msa0193730:CDS | 50.0% |
| TGACAGCGGTTGATTGTCGT+TGG | - | chr2_1:9532062-9532081 | Msa0193730:CDS | 50.0% | |
| ! | TCATACCTCTGCAAGAGCAC+TGG | + | chr2_1:9532530-9532549 | None:intergenic | 50.0% |
| GATTTGCAATGCTGTGGCTG+TGG | - | chr2_1:9533285-9533304 | Msa0193730:CDS | 50.0% | |
| ! | TGCAGAAGCAATTGGTAGCC+AGG | - | chr2_1:9533606-9533625 | Msa0193730:intron | 50.0% |
| ATATGCCGGTGTCTGACACT+TGG | - | chr2_1:9534035-9534054 | Msa0193730:intron | 50.0% | |
| AGTTGCCAAGTGTCAGACAC+CGG | + | chr2_1:9534043-9534062 | None:intergenic | 50.0% | |
| TCCATGTGTGAGTTTGGAGG+AGG | - | chr2_1:9534509-9534528 | Msa0193730:intron | 50.0% | |
| ACCTCCTCCAAACTCACACA+TGG | + | chr2_1:9534513-9534532 | None:intergenic | 50.0% | |
| AGGGAAATGCCTTTCTCGGT+AGG | + | chr2_1:9534561-9534580 | None:intergenic | 50.0% | |
| ! | GCTGCTTCTTCTGGTGTCAA+TGG | + | chr2_1:9534763-9534782 | None:intergenic | 50.0% |
| GAAGCAGCACTTGTTCTAGC+AGG | - | chr2_1:9534775-9534794 | Msa0193730:intron | 50.0% | |
| GCACTTGTTCTAGCAGGTCT+TGG | - | chr2_1:9534781-9534800 | Msa0193730:intron | 50.0% | |
| GAATGGTGCAAGTTCAGTGG+TGG | + | chr2_1:9534923-9534942 | None:intergenic | 50.0% | |
| CCTGAATGGTGCAAGTTCAG+TGG | + | chr2_1:9534926-9534945 | None:intergenic | 50.0% | |
| CCACTGAACTTGCACCATTC+AGG | - | chr2_1:9534923-9534942 | Msa0193730:intron | 50.0% | |
| !! | GTACTGACTGCGTGAATGTG+TGG | - | chr2_1:9535193-9535212 | Msa0193730:five_prime_UTR | 50.0% |
| TTGGCTACCAGAGTCAGTCA+TGG | + | chr2_1:9535503-9535522 | None:intergenic | 50.0% | |
| GGGTTCAGAACCTACTATGG+CGG | - | chr2_1:9535541-9535560 | Msa0193730:five_prime_UTR | 50.0% | |
| TTCAGAACCTACTATGGCGG+CGG | - | chr2_1:9535544-9535563 | Msa0193730:five_prime_UTR | 50.0% | |
| !! | GAGGCTAGCCTTGTCTTGTT+CGG | + | chr2_1:9535589-9535608 | None:intergenic | 50.0% |
| CACATGCATTCTGGACACCT+AGG | + | chr2_1:9535730-9535749 | None:intergenic | 50.0% | |
| CAAGCAATGATCCACCGTCG+TGG | - | chr2_1:9532032-9532051 | Msa0193730:CDS | 55.0% | |
| ATGATCCACCGTCGTGGAAG+AGG | - | chr2_1:9532038-9532057 | Msa0193730:CDS | 55.0% | |
| GCTGTCATCCTCTTCCACGA+CGG | + | chr2_1:9532049-9532068 | None:intergenic | 55.0% | |
| GTCGTGGAAGAGGATGACAG+CGG | - | chr2_1:9532048-9532067 | Msa0193730:CDS | 55.0% | |
| GTCATCCTCTTCCACGACGG+TGG | + | chr2_1:9532046-9532065 | None:intergenic | 60.0% | |
| AGCATGACCGCCGCCATAGT+AGG | + | chr2_1:9535554-9535573 | None:intergenic | 60.0% | |
| GCGGTCATGCTCCTACCTTG+CGG | - | chr2_1:9535563-9535582 | Msa0193730:five_prime_UTR | 60.0% | |
| ! | GTCTTGTTCGGCCGCAAGGT+AGG | + | chr2_1:9535577-9535596 | None:intergenic | 60.0% |
| ! | CCTTGTCTTGTTCGGCCGCA+AGG | + | chr2_1:9535581-9535600 | None:intergenic | 60.0% |
| CCTTGCGGCCGAACAAGACA+AGG | - | chr2_1:9535578-9535597 | Msa0193730:five_prime_UTR | 60.0% | |
| GGCGTCCAGTGCTCTTGCAG+AGG | - | chr2_1:9532522-9532541 | Msa0193730:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 9531792 | 9535918 | 9531792 | ID=Msa0193730;Name=Msa0193730 |
| chr2_1 | mRNA | 9531792 | 9535918 | 9531792 | ID=Msa0193730-mRNA-1;Parent=Msa0193730;Name=Msa0193730-mRNA-1;_AED=0.13;_eAED=0.13;_QI=1112|1|1|1|0.88|0.9|10|156|298 |
| chr2_1 | exon | 9531792 | 9532256 | 9531792 | ID=Msa0193730-mRNA-1:exon:4401;Parent=Msa0193730-mRNA-1 |
| chr2_1 | exon | 9532750 | 9532990 | 9532750 | ID=Msa0193730-mRNA-1:exon:4400;Parent=Msa0193730-mRNA-1 |
| chr2_1 | exon | 9533101 | 9533429 | 9533101 | ID=Msa0193730-mRNA-1:exon:4399;Parent=Msa0193730-mRNA-1 |
| chr2_1 | exon | 9533848 | 9533991 | 9533848 | ID=Msa0193730-mRNA-1:exon:4398;Parent=Msa0193730-mRNA-1 |
| chr2_1 | exon | 9534083 | 9534203 | 9534083 | ID=Msa0193730-mRNA-1:exon:4397;Parent=Msa0193730-mRNA-1 |
| chr2_1 | exon | 9534336 | 9534433 | 9534336 | ID=Msa0193730-mRNA-1:exon:4396;Parent=Msa0193730-mRNA-1 |
| chr2_1 | exon | 9534600 | 9534670 | 9534600 | ID=Msa0193730-mRNA-1:exon:4395;Parent=Msa0193730-mRNA-1 |
| chr2_1 | exon | 9534952 | 9535051 | 9534952 | ID=Msa0193730-mRNA-1:exon:4394;Parent=Msa0193730-mRNA-1 |
| chr2_1 | exon | 9535167 | 9535253 | 9535167 | ID=Msa0193730-mRNA-1:exon:4393;Parent=Msa0193730-mRNA-1 |
| chr2_1 | exon | 9535410 | 9535918 | 9535410 | ID=Msa0193730-mRNA-1:exon:4392;Parent=Msa0193730-mRNA-1 |
| chr2_1 | five_prime_UTR | 9535410 | 9535918 | 9535410 | ID=Msa0193730-mRNA-1:five_prime_utr;Parent=Msa0193730-mRNA-1 |
| chr2_1 | five_prime_UTR | 9535167 | 9535253 | 9535167 | ID=Msa0193730-mRNA-1:five_prime_utr;Parent=Msa0193730-mRNA-1 |
| chr2_1 | five_prime_UTR | 9534952 | 9535051 | 9534952 | ID=Msa0193730-mRNA-1:five_prime_utr;Parent=Msa0193730-mRNA-1 |
| chr2_1 | five_prime_UTR | 9534600 | 9534670 | 9534600 | ID=Msa0193730-mRNA-1:five_prime_utr;Parent=Msa0193730-mRNA-1 |
| chr2_1 | five_prime_UTR | 9534336 | 9534433 | 9534336 | ID=Msa0193730-mRNA-1:five_prime_utr;Parent=Msa0193730-mRNA-1 |
| chr2_1 | five_prime_UTR | 9534083 | 9534203 | 9534083 | ID=Msa0193730-mRNA-1:five_prime_utr;Parent=Msa0193730-mRNA-1 |
| chr2_1 | five_prime_UTR | 9533866 | 9533991 | 9533866 | ID=Msa0193730-mRNA-1:five_prime_utr;Parent=Msa0193730-mRNA-1 |
| chr2_1 | CDS | 9533848 | 9533865 | 9533848 | ID=Msa0193730-mRNA-1:cds;Parent=Msa0193730-mRNA-1 |
| chr2_1 | CDS | 9533101 | 9533429 | 9533101 | ID=Msa0193730-mRNA-1:cds;Parent=Msa0193730-mRNA-1 |
| chr2_1 | CDS | 9532750 | 9532990 | 9532750 | ID=Msa0193730-mRNA-1:cds;Parent=Msa0193730-mRNA-1 |
| chr2_1 | CDS | 9531948 | 9532256 | 9531948 | ID=Msa0193730-mRNA-1:cds;Parent=Msa0193730-mRNA-1 |
| chr2_1 | three_prime_UTR | 9531792 | 9531947 | 9531792 | ID=Msa0193730-mRNA-1:three_prime_utr;Parent=Msa0193730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
