AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0629600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0629600 MtrunA17_Chr4g0005921 98.025 557 11 0 1 557 1 557 0.0 1127
Msa0629600 MtrunA17_Chr5g0429511 73.201 556 143 4 5 557 6 558 0.0 855
Msa0629600 MtrunA17_Chr3g0104061 74.583 539 134 2 19 557 21 556 0.0 845
Msa0629600 MtrunA17_Chr5g0436461 67.151 551 176 4 8 557 8 554 0.0 793
Msa0629600 MtrunA17_Chr5g0404341 60.323 557 218 2 2 557 12 566 0.0 717
Msa0629600 MtrunA17_Chr5g0404361 60.107 559 216 4 3 557 56 611 0.0 711
Msa0629600 MtrunA17_Chr7g0238981 58.874 586 212 6 1 557 8 593 0.0 697
Msa0629600 MtrunA17_Chr7g0237491 58.025 567 224 4 5 557 14 580 0.0 684
Msa0629600 MtrunA17_Chr7g0237441 57.549 563 225 4 9 557 18 580 0.0 681
Msa0629600 MtrunA17_Chr7g0238351 57.066 559 225 4 14 557 23 581 0.0 669
Msa0629600 MtrunA17_Chr7g0238941 55.732 567 237 6 5 557 12 578 0.0 657
Msa0629600 MtrunA17_Chr4g0031901 55.744 531 225 5 24 545 44 573 0.0 619
Msa0629600 MtrunA17_Chr5g0437681 49.912 565 265 6 7 557 7 567 0.0 590
Msa0629600 MtrunA17_Chr3g0114211 50.353 566 264 8 3 557 11 570 0.0 580
Msa0629600 MtrunA17_Chr5g0431581 50.984 559 259 7 8 557 8 560 0.0 569
Msa0629600 MtrunA17_Chr8g0346581 48.352 546 262 7 24 557 34 571 0.0 539
Msa0629600 MtrunA17_Chr2g0278811 45.804 572 274 5 22 557 36 607 0.0 529
Msa0629600 MtrunA17_Chr4g0008521 47.359 549 274 4 23 557 25 572 3.94e-179 517
Msa0629600 MtrunA17_Chr7g0240971 46.479 568 284 6 8 557 5 570 1.04e-172 500
Msa0629600 MtrunA17_Chr7g0240991 44.386 570 296 10 3 557 8 571 1.11e-171 498
Msa0629600 MtrunA17_Chr5g0436431 59.307 231 90 3 286 515 1 228 5.00e-93 284
Msa0629600 MtrunA17_Chr3g0133861 45.455 330 160 10 226 541 1 324 3.76e-84 265
Msa0629600 MtrunA17_Chr3g0118321 32.327 563 321 17 9 535 7 545 2.58e-73 244
Msa0629600 MtrunA17_Chr3g0118331 30.411 559 338 15 8 535 6 544 5.86e-66 224
Msa0629600 MtrunA17_Chr3g0133871 54.494 178 81 0 25 202 33 210 4.55e-64 209
Msa0629600 MtrunA17_Chr4g0038671 27.928 555 360 13 8 557 13 532 4.19e-56 197
Msa0629600 MtrunA17_Chr3g0143671 28.187 557 357 13 10 557 11 533 2.86e-55 195
Msa0629600 MtrunA17_Chr8g0374271 28.030 528 331 14 19 537 26 513 2.21e-51 184
Msa0629600 MtrunA17_Chr3g0079321 25.853 557 350 15 27 557 32 551 7.01e-51 184
Msa0629600 MtrunA17_Chr1g0157341 27.933 537 349 12 5 537 10 512 1.65e-50 182
Msa0629600 MtrunA17_Chr8g0374261 27.027 518 319 13 20 523 25 497 3.77e-50 181
Msa0629600 MtrunA17_Chr5g0402831 27.473 546 340 17 19 555 26 524 1.81e-49 179
Msa0629600 MtrunA17_Chr4g0024861 27.613 507 319 14 20 517 23 490 5.33e-49 177
Msa0629600 MtrunA17_Chr4g0056511 26.361 588 363 17 1 557 1 549 4.43e-48 176
Msa0629600 MtrunA17_Chr2g0322441 28.797 507 313 14 20 517 26 493 3.40e-47 172
Msa0629600 MtrunA17_Chr4g0075071 29.175 521 319 17 8 517 13 494 9.12e-43 160
Msa0629600 MtrunA17_Chr4g0043261 26.987 541 349 17 7 537 7 511 6.05e-42 158
Msa0629600 MtrunA17_Chr3g0121161 25.185 540 369 16 7 539 47 558 4.57e-41 156
Msa0629600 MtrunA17_Chr3g0121151 25.185 540 369 15 7 539 47 558 1.56e-40 155
Msa0629600 MtrunA17_Chr3g0121171 25.093 538 372 15 7 539 1157 1668 2.44e-40 157
Msa0629600 MtrunA17_Chr3g0121171 25.185 540 369 16 7 539 582 1093 3.62e-40 157
Msa0629600 MtrunA17_Chr3g0121171 25.097 518 359 14 25 539 27 518 6.41e-40 156
Msa0629600 MtrunA17_Chr3g0121171 25.161 465 315 15 80 539 1798 2234 4.08e-33 135
Msa0629600 MtrunA17_Chr7g0234061 25.969 516 333 17 25 522 30 514 1.11e-38 150
Msa0629600 MtrunA17_Chr4g0043251 25.132 569 374 17 7 556 10 545 2.68e-36 142
Msa0629600 MtrunA17_Chr3g0118351 33.436 326 175 11 237 535 6 316 7.90e-35 134
Msa0629600 MtrunA17_Chr8g0382691 41.615 161 90 2 379 535 390 550 2.62e-33 134
Msa0629600 MtrunA17_Chr4g0024641 26.549 452 283 18 76 517 1 413 1.01e-32 134
Msa0629600 MtrunA17_Chr3g0118341 34.118 170 105 5 5 169 4 171 4.93e-26 105
Msa0629600 MtrunA17_Chr5g0436411 63.889 72 26 0 8 79 8 79 3.66e-25 99.0
Msa0629600 MtrunA17_Chr1g0197301 27.077 325 193 10 211 522 1 294 1.34e-22 99.0
Msa0629600 MtrunA17_Chr1g0197311 27.907 172 90 4 27 165 26 196 2.15e-15 76.3
Msa0629600 MtrunA17_Chr4g0075781 31.884 138 85 3 146 283 21 149 3.50e-11 62.0
Msa0629600 MtrunA17_Chr3g0118931 48.333 60 31 0 467 526 10 69 3.68e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0629600 AT2G38080.1 74.368 554 140 2 4 557 7 558 0.0 885
Msa0629600 AT5G01190.1 72.272 559 152 3 1 557 1 558 0.0 816
Msa0629600 AT5G01190.2 70.841 559 146 4 1 557 1 544 0.0 790
Msa0629600 AT5G58910.2 65.832 559 183 4 5 557 11 567 0.0 766
Msa0629600 AT5G58910.3 65.653 559 183 5 5 557 11 566 0.0 761
Msa0629600 AT5G58910.1 66.415 530 163 5 34 557 3 523 0.0 725
Msa0629600 AT5G03260.1 59.459 555 217 4 8 557 6 557 0.0 692
Msa0629600 AT5G60020.1 55.245 572 235 6 7 557 6 577 0.0 656
Msa0629600 AT5G60020.3 56.985 544 215 5 33 557 2 545 0.0 646
Msa0629600 AT2G29130.1 53.054 573 253 7 1 557 1 573 0.0 630
Msa0629600 AT5G05390.1 52.669 562 250 7 7 557 9 565 0.0 604
Msa0629600 AT5G60020.2 54.151 530 222 6 7 515 6 535 0.0 588
Msa0629600 AT2G30210.1 49.129 574 271 7 1 557 1 570 0.0 574
Msa0629600 AT1G18140.1 49.820 556 254 8 24 557 29 581 0.0 572
Msa0629600 AT2G40370.1 49.123 570 257 9 14 557 18 580 0.0 567
Msa0629600 AT5G07130.1 50.174 576 254 10 5 557 4 569 0.0 561
Msa0629600 AT5G09360.1 46.057 558 287 6 7 557 19 569 0.0 531
Msa0629600 AT2G46570.1 45.636 550 281 6 19 557 27 569 0.0 523
Msa0629600 AT5G01050.1 44.425 565 289 8 9 557 13 568 8.84e-170 494
Msa0629600 AT5G07130.2 51.417 494 208 9 86 557 1 484 1.36e-169 489
Msa0629600 AT5G07130.3 51.417 494 208 9 86 557 1 484 1.36e-169 489
Msa0629600 AT5G01040.1 44.207 561 294 8 9 557 13 566 4.00e-169 492
Msa0629600 AT3G09220.1 45.841 541 281 6 10 540 12 550 3.86e-166 484
Msa0629600 AT5G48100.1 45.269 539 279 10 21 547 19 553 1.03e-163 478
Msa0629600 AT2G46570.2 45.287 488 249 6 81 557 4 484 3.41e-157 458
Msa0629600 AT3G09220.2 46.916 454 229 6 97 540 2 453 1.94e-138 410
Msa0629600 AT4G39830.1 33.813 556 332 14 5 535 16 560 5.00e-87 281
Msa0629600 AT5G21105.1 31.874 571 339 13 8 547 22 573 9.60e-76 251
Msa0629600 AT5G21100.1 32.707 532 296 18 39 536 39 542 7.76e-71 238
Msa0629600 AT5G21105.3 31.343 536 321 12 8 515 22 538 1.38e-66 226
Msa0629600 AT4G39830.2 32.773 476 282 13 85 535 3 465 3.03e-62 213
Msa0629600 AT4G39830.3 32.770 473 280 13 88 535 4 463 1.54e-61 211
Msa0629600 AT4G39830.4 31.789 475 275 12 85 535 3 452 7.46e-59 203
Msa0629600 AT1G21850.1 28.872 523 328 14 7 523 12 496 2.44e-52 187
Msa0629600 AT4G25240.2 29.055 561 328 18 26 557 31 550 6.51e-52 187
Msa0629600 AT4G25240.1 29.055 561 328 18 26 557 31 550 6.51e-52 187
Msa0629600 AT4G12420.1 26.151 543 340 13 5 522 6 512 6.84e-52 187
Msa0629600 AT4G12420.2 26.151 543 340 13 5 522 6 512 6.84e-52 187
Msa0629600 AT1G76160.1 27.002 537 349 13 7 537 11 510 7.78e-52 186
Msa0629600 AT1G21860.1 27.885 520 331 13 10 523 15 496 8.59e-52 186
Msa0629600 AT4G22010.1 27.758 562 359 14 5 557 7 530 2.37e-51 184
Msa0629600 AT1G41830.1 27.110 557 363 16 8 557 11 531 5.95e-51 183
Msa0629600 AT1G75790.1 27.061 558 367 15 4 553 5 530 6.02e-51 184
Msa0629600 AT5G66920.1 27.455 550 343 15 20 557 33 538 1.22e-50 182
Msa0629600 AT4G38420.1 27.358 530 329 13 4 517 10 499 3.47e-49 179
Msa0629600 AT5G51480.1 26.560 561 343 17 26 557 30 550 3.48e-49 179
Msa0629600 AT4G37160.1 25.874 572 358 13 9 557 6 534 5.07e-49 178
Msa0629600 AT4G28090.1 27.490 502 319 14 45 537 49 514 8.81e-49 177
Msa0629600 AT5G48450.2 26.571 557 366 16 4 554 9 528 6.25e-48 176
Msa0629600 AT5G48450.1 26.571 557 366 16 4 554 9 528 1.02e-47 176
Msa0629600 AT2G23630.2 27.481 524 333 12 42 557 53 537 3.80e-46 170
Msa0629600 AT2G23630.1 27.672 524 332 12 42 557 48 532 4.00e-46 170
Msa0629600 AT4G38420.3 27.022 507 324 12 4 499 10 481 2.97e-45 167
Msa0629600 AT4G38420.2 26.722 479 306 11 4 471 10 454 2.27e-41 155
Msa0629600 AT5G21105.2 32.081 346 214 6 209 547 51 382 1.14e-38 146
Msa0629600 AT4G37160.2 25.720 486 296 12 9 471 6 449 4.97e-38 145
Msa0629600 AT1G55570.1 26.654 529 347 17 1 517 1 500 1.97e-37 146
Msa0629600 AT3G13390.1 27.888 502 322 18 25 517 29 499 2.98e-37 145
Msa0629600 AT1G55560.1 25.312 561 366 19 6 554 4 523 7.81e-36 141
Msa0629600 AT3G13400.2 24.376 521 357 16 6 517 5 497 1.86e-32 131
Msa0629600 AT3G13400.1 24.376 521 357 16 6 517 5 497 1.86e-32 131

Find 130 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATCACAATTGTTTCAATT+TGG 0.198155 4_3:-10489316 None:intergenic
AAAGCAATTGTCACAGTTAA+TGG 0.198190 4_3:+10486999 Msa0629600:CDS
TAAATGGAGTATGCACATTT+TGG 0.209018 4_3:+10490838 Msa0629600:three_prime_UTR
TCAACAAGGTTAAACTTCTT+TGG 0.219638 4_3:-10490007 None:intergenic
GTTCAAGCATATTTAATAAA+TGG 0.221288 4_3:+10490822 Msa0629600:three_prime_UTR
TTTGGCATGCACATGTTAAT+TGG 0.227901 4_3:+10488290 Msa0629600:CDS
AACATTAACTGGGTATTTCT+TGG 0.229766 4_3:-10489576 None:intergenic
TGTGAGGAATATCAACATTT+TGG 0.230171 4_3:-10490630 None:intergenic
CACAGTTAATGGGAAGTTTC+CGG 0.236215 4_3:+10487010 Msa0629600:CDS
TGTTCCAGGAAGACCATTTA+TGG 0.237415 4_3:-10488747 None:intergenic
AACCATCCTGTTCATCTTCA+TGG 0.254799 4_3:+10489929 Msa0629600:CDS
TCAGATGCTCATACCATAAA+TGG 0.255242 4_3:+10488734 Msa0629600:CDS
AGATTGTGCATATGTATTAT+TGG 0.263411 4_3:+10490884 Msa0629600:three_prime_UTR
ACATACAATTTCACCATTAC+TGG 0.266011 4_3:+10488250 Msa0629600:CDS
GGATAAGGAACACCTTTCTT+TGG 0.297000 4_3:-10488349 None:intergenic
GCCAGATGATGAATTGGTTT+TGG 0.300374 4_3:+10488381 Msa0629600:CDS
TTTCTTTGGTAAAATAACTA+TGG 0.303777 4_3:-10488335 None:intergenic
GTCAAAGAGGAACACTTCTT+TGG 0.310116 4_3:+10488272 Msa0629600:CDS
GAACAATTGGCCACTGTTCC+AGG 0.316593 4_3:-10488761 None:intergenic
CCAATTCATCATCTGGCTTT+GGG 0.320192 4_3:-10488375 None:intergenic
ACCAATTCATCATCTGGCTT+TGG 0.321201 4_3:-10488376 None:intergenic
CCCAAAGCCAGATGATGAAT+TGG 0.321450 4_3:+10488375 Msa0629600:CDS
TTATAAATATGAGGTGGATT+TGG 0.329000 4_3:-10489788 None:intergenic
GCAACAGGTGCATCCATAAA+AGG 0.347626 4_3:-10489410 None:intergenic
GGTTTCAATTTCTTTGTTGT+TGG 0.348108 4_3:+10489950 Msa0629600:CDS
AGTGAGTGAAAATGGTTTCT+TGG 0.351120 4_3:+10486201 Msa0629600:exon
CAGCTTGTTATGCAAGATAC+TGG 0.352988 4_3:+10489890 Msa0629600:CDS
TTGGTTCATGCATTGCCATT+TGG 0.358213 4_3:+10490515 Msa0629600:CDS
AGTGAGTGAGTGAGTGAAAA+TGG 0.365147 4_3:+10486193 Msa0629600:exon
GGTGTTTGGTTTAATACAAA+AGG 0.369465 4_3:+10490934 Msa0629600:three_prime_UTR
TCTTGTATTATATAGGAGTT+TGG 0.374663 4_3:+10490496 Msa0629600:intron
ACTGCTACATTACATTATTC+AGG 0.375617 4_3:+10489452 Msa0629600:CDS
ACAGTTAATGGGAAGTTTCC+GGG 0.376456 4_3:+10487011 Msa0629600:CDS
ATTTATAATTTCACTGGTGC+TGG 0.376600 4_3:+10489803 Msa0629600:CDS
GGAGCTATCACTGATTGTTT+AGG 0.383191 4_3:-10490594 None:intergenic
TTGTTGCATATTTCCAGCTT+TGG 0.394093 4_3:+10486244 Msa0629600:CDS
CATACCATAAATGGTCTTCC+TGG 0.400991 4_3:+10488743 Msa0629600:CDS
TAACTATGTCCTGGTTGAAT+TGG 0.405627 4_3:-10488226 None:intergenic
ATCAATGAAGCTCTAAAATC+AGG 0.405686 4_3:+10488695 Msa0629600:CDS
GGAGGTGTAGTTAGAAATGT+TGG 0.405928 4_3:-10489494 None:intergenic
CCAATAGTGTTCCTTTCAAC+AGG 0.406648 4_3:-10490031 None:intergenic
CTTCTACTACTGTGAGTTTG+TGG 0.408210 4_3:-10489268 None:intergenic
AATACCTTGTGTAGAACAAT+TGG 0.408385 4_3:-10488774 None:intergenic
TTTGTTGTTGGTAAAGGAGT+TGG 0.409860 4_3:+10489962 Msa0629600:CDS
TTGAAACCATGAAGATGAAC+AGG 0.413774 4_3:-10489935 None:intergenic
AATTTCTTTGTTGTTGGTAA+AGG 0.416507 4_3:+10489956 Msa0629600:CDS
CAGCATTGATGATTCTTAGT+AGG 0.420767 4_3:-10489211 None:intergenic
ACCAAAACCAATTCATCATC+TGG 0.422160 4_3:-10488382 None:intergenic
CGGGACCCACTCTTTATGCC+AGG 0.426805 4_3:+10487030 Msa0629600:CDS
GTTAAATTGTCTACAGCAAC+AGG 0.433150 4_3:-10489425 None:intergenic
ATATTGGCAGGCATGGTATT+AGG 0.442333 4_3:+10488155 Msa0629600:intron
AAGCAATTGTCACAGTTAAT+GGG 0.447103 4_3:+10487000 Msa0629600:CDS
TGGTGTACCAGCTGGTGGTT+GGG 0.453591 4_3:+10490051 Msa0629600:CDS
GTGTTTGGTTTAATACAAAA+GGG 0.459483 4_3:+10490935 Msa0629600:three_prime_UTR
CCTCATATTTATAATTTCAC+TGG 0.464423 4_3:+10489797 Msa0629600:CDS
AGTCAAAAGTGTACACTTGT+TGG 0.467075 4_3:-10490909 None:intergenic
ACTTTGCACTCGACCAAAGC+TGG 0.472524 4_3:-10486257 None:intergenic
TAAATATGAGGTGGATTTGG+TGG 0.477812 4_3:-10489785 None:intergenic
TCTGGCTTTGGGAAAGGATA+AGG 0.480287 4_3:-10488364 None:intergenic
GAGGTGTAGTTAGAAATGTT+GGG 0.483750 4_3:-10489493 None:intergenic
TTGAGGACAGGTTGGGCTGA+TGG 0.489336 4_3:+10488181 Msa0629600:CDS
TTGGTGTACCAGCTGGTGGT+TGG 0.489399 4_3:+10490050 Msa0629600:CDS
TAGGCAATTGAGGACAGGTT+GGG 0.490554 4_3:+10488174 Msa0629600:CDS
TGTTCCTCTTTGACCAGTAA+TGG 0.494174 4_3:-10488263 None:intergenic
AGATGAACAGGATGGTTCTC+AGG 0.496558 4_3:-10489923 None:intergenic
CTTTGGTCGAGTGCAAAGTT+AGG 0.497718 4_3:+10486261 Msa0629600:CDS
CCTTCATGTAAAGCTGCAAA+TGG 0.499621 4_3:+10489656 Msa0629600:CDS
TCATCATCTGGCTTTGGGAA+AGG 0.504275 4_3:-10488370 None:intergenic
ATTGATGATTCTTAGTAGGT+AGG 0.505350 4_3:-10489207 None:intergenic
GTTCATGCATTGCCATTTGG+AGG 0.507146 4_3:+10490518 Msa0629600:CDS
TTGCCTATGATAGTGACTAA+AGG 0.507504 4_3:-10491062 None:intergenic
TCATTGGTGAATGCAACTTA+AGG 0.508951 4_3:+10486125 None:intergenic
GTATGAGCATCTGAAACATT+TGG 0.509634 4_3:-10488725 None:intergenic
CCATTTGCAGCTTTACATGA+AGG 0.512374 4_3:-10489656 None:intergenic
TACAATTCACAAAGGGTAGT+AGG 0.513549 4_3:+10490664 Msa0629600:three_prime_UTR
TTGATTAGTTTAGCTAAATG+TGG 0.516859 4_3:+10490978 Msa0629600:three_prime_UTR
ACAATTGTTTCAATTTGGAA+TGG 0.524020 4_3:-10489311 None:intergenic
TACAACATGGGGTCTAAAGA+TGG 0.524585 4_3:+10490545 Msa0629600:CDS
CCTTCCAAATTCACAAAAGT+AGG 0.529000 4_3:+10490687 Msa0629600:three_prime_UTR
ATTTGGAGGTGCATACAACA+TGG 0.531146 4_3:+10490532 Msa0629600:CDS
ATGTTGTATGCACCTCCAAA+TGG 0.535908 4_3:-10490530 None:intergenic
AGTACATTTGTTGTTTGACC+AGG 0.537617 4_3:-10489341 None:intergenic
CCAGTGAAATTATAAATATG+AGG 0.540266 4_3:-10489797 None:intergenic
TTCACCATTACTGGTCAAAG+AGG 0.543070 4_3:+10488259 Msa0629600:CDS
ACCACAATATTACCATCCAT+TGG 0.545580 4_3:+10487093 Msa0629600:CDS
TTCACAAAAGTAGGTGTGGA+GGG 0.546959 4_3:+10490696 Msa0629600:three_prime_UTR
GGCATGGTATTAGGCAATTG+AGG 0.551664 4_3:+10488164 Msa0629600:intron
AACACTATTGGTGTACCAGC+TGG 0.553147 4_3:+10490043 Msa0629600:CDS
GGTATTAGGCAATTGAGGAC+AGG 0.554052 4_3:+10488169 Msa0629600:CDS
CCTGTTGAAAGGAACACTAT+TGG 0.559502 4_3:+10490031 Msa0629600:CDS
TGGAGGGATACAGAGGAGCC+AGG 0.560611 4_3:+10490712 Msa0629600:three_prime_UTR
CAAATTCACAAAAGTAGGTG+TGG 0.563160 4_3:+10490692 Msa0629600:three_prime_UTR
AGATTCAGAGCTGATAATCC+AGG 0.563607 4_3:+10490082 Msa0629600:CDS
ACCTTGTTGATCCTGTTGAA+AGG 0.571542 4_3:+10490020 Msa0629600:CDS
ATCTTCCCTGGCATAAAGAG+TGG 0.572369 4_3:-10487036 None:intergenic
TTAGGCAATTGAGGACAGGT+TGG 0.574915 4_3:+10488173 Msa0629600:CDS
TGGCTAAGATCAACTGTCCA+TGG 0.575480 4_3:+10488310 Msa0629600:CDS
TATCACTGTATCATCTTCCC+TGG 0.579555 4_3:-10487048 None:intergenic
TGAAGCTCTAAAATCAGGAA+TGG 0.584529 4_3:+10488700 Msa0629600:CDS
AAATGGTCTTCCTGGAACAG+TGG 0.590659 4_3:+10488751 Msa0629600:CDS
ATTGCAACCCAACCACCAGC+TGG 0.593002 4_3:-10490058 None:intergenic
AAGAATGTCTAACCAATGGA+TGG 0.595985 4_3:-10487105 None:intergenic
GAAACAATTGTGATAGCACC+TGG 0.597555 4_3:+10489323 Msa0629600:CDS
GGGACCCACTCTTTATGCCA+GGG 0.598369 4_3:+10487031 Msa0629600:CDS
ATGTTCATACAATTCACAAA+GGG 0.599638 4_3:+10490657 Msa0629600:three_prime_UTR
CTGGCATAAAGAGTGGGTCC+CGG 0.600818 4_3:-10487029 None:intergenic
GCTTGTAATAAAGCTGTAGT+TGG 0.603763 4_3:-10489722 None:intergenic
ATTCACAAAAGTAGGTGTGG+AGG 0.612600 4_3:+10490695 Msa0629600:three_prime_UTR
AATGTTCATACAATTCACAA+AGG 0.615103 4_3:+10490656 Msa0629600:three_prime_UTR
GTAGGTGTGGAGGGATACAG+AGG 0.617116 4_3:+10490705 Msa0629600:three_prime_UTR
TTTGGAGGTGCATACAACAT+GGG 0.618425 4_3:+10490533 Msa0629600:CDS
GTGAAATTATAAATATGAGG+TGG 0.624519 4_3:-10489794 None:intergenic
AGGTATTCACAATTATTGAG+AGG 0.624881 4_3:+10491027 Msa0629600:three_prime_UTR
TCCTTTCAACAGGATCAACA+AGG 0.625266 4_3:-10490021 None:intergenic
TTGTATGTATAACTATGTCC+TGG 0.632359 4_3:-10488235 None:intergenic
GCAGCTTTACATGAAGGACA+AGG 0.639189 4_3:-10489650 None:intergenic
ACCAATGGATGGTAATATTG+TGG 0.640439 4_3:-10487094 None:intergenic
TCTTCCCTGGCATAAAGAGT+GGG 0.644065 4_3:-10487035 None:intergenic
GGACACTGTGTGATATATGC+AGG 0.645297 4_3:-10488205 None:intergenic
GTAAAATAACTATGGCACCA+TGG 0.647215 4_3:-10488327 None:intergenic
TACAAACTACCTGTGGAGAG+TGG 0.647512 4_3:+10489179 Msa0629600:CDS
TTGTATGAACATTTGATGTG+AGG 0.653502 4_3:-10490646 None:intergenic
TGAATAATGTAATGTAGCAG+TGG 0.657179 4_3:-10489450 None:intergenic
AGGTGTAGTTAGAAATGTTG+GGG 0.665714 4_3:-10489492 None:intergenic
TTGGAGGTGCATACAACATG+GGG 0.676626 4_3:+10490534 Msa0629600:CDS
AACCATGAAGATGAACAGGA+TGG 0.677352 4_3:-10489931 None:intergenic
ACACAGTGTCCAATTCAACC+AGG 0.693720 4_3:+10488217 Msa0629600:CDS
GTGGCCAATTGTTCTACACA+AGG 0.704099 4_3:+10488770 Msa0629600:CDS
ACTATTGGTGTACCAGCTGG+TGG 0.711640 4_3:+10490046 Msa0629600:CDS
AGATGTTTACAAACTACCTG+TGG 0.715278 4_3:+10489172 Msa0629600:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAATAAAATAAATTT+AGG - chr4_3:10487761-10487780 None:intergenic 0.0%
!!! AAATTTATTTTATTTTATTT+TGG + chr4_3:10487761-10487780 Msa0629600:intron 0.0%
!! TTTCTTAGATATTATATTTA+TGG + chr4_3:10486520-10486539 Msa0629600:intron 10.0%
!! TTCTTAGATATTATATTTAT+GGG + chr4_3:10486521-10486540 Msa0629600:intron 10.0%
!!! TGATGATTAATATTTTTTTT+TGG - chr4_3:10487327-10487346 None:intergenic 10.0%
!!! TTAGGAAATTTATTTTTTTA+GGG - chr4_3:10487743-10487762 None:intergenic 10.0%
!!! TTTAGGAAATTTATTTTTTT+AGG - chr4_3:10487744-10487763 None:intergenic 10.0%
!! AAAGATAAATAACATTAATT+TGG - chr4_3:10487958-10487977 None:intergenic 10.0%
!! TAAAAATAAAGTGAATTATT+TGG - chr4_3:10488021-10488040 None:intergenic 10.0%
!! AAAATTAAACTAATTAACAA+AGG - chr4_3:10488435-10488454 None:intergenic 10.0%
!!! ACCTTTTTTAATTTTTTATA+GGG - chr4_3:10488862-10488881 None:intergenic 10.0%
!!! TACCTTTTTTAATTTTTTAT+AGG - chr4_3:10488863-10488882 None:intergenic 10.0%
!! ATAAAAAATTAAAAAAGGTA+TGG + chr4_3:10488863-10488882 Msa0629600:intron 10.0%
!!! TTTTTTTTTTCTTTCTTATT+TGG + chr4_3:10489139-10489158 Msa0629600:intron 10.0%
!!! ATATATTTTTTTTTGAAGGA+GGG - chr4_3:10487695-10487714 None:intergenic 15.0%
!!! TTTTTTTTTTTTTTAGGTGT+TGG - chr4_3:10487987-10488006 None:intergenic 15.0%
!! ATTCTAATAAATGTTTATGA+TGG + chr4_3:10488620-10488639 Msa0629600:intron 15.0%
!! ATACTCTATAAATATTATGA+AGG + chr4_3:10488818-10488837 Msa0629600:intron 15.0%
!! TACTCTATAAATATTATGAA+GGG + chr4_3:10488819-10488838 Msa0629600:intron 15.0%
!!! CCTTTTTTAATTTTTTATAG+GGG - chr4_3:10488861-10488880 None:intergenic 15.0%
!! CTTAATAAACCAAAAAATTT+AGG + chr4_3:10489084-10489103 Msa0629600:intron 15.0%
!!! AATTTTTTAAACTCACTTAA+AGG + chr4_3:10489545-10489564 Msa0629600:CDS 15.0%
!! AAATTGATTAAACAAAACAA+CGG - chr4_3:10490259-10490278 None:intergenic 15.0%
!!! ATTTCTCATTGAAATTTTTA+AGG + chr4_3:10490415-10490434 Msa0629600:intron 15.0%
!! AATTATTAAACCCTATTAAA+AGG - chr4_3:10490467-10490486 None:intergenic 15.0%
!! TACAAATTTCATGTAAGTAA+GGG + chr4_3:10486287-10486306 Msa0629600:intron 20.0%
!!! TAGAGAAAGTTTCTTTTTTT+AGG + chr4_3:10486662-10486681 Msa0629600:intron 20.0%
!!! TGCATAGAATTAACTAATTT+TGG + chr4_3:10486919-10486938 Msa0629600:intron 20.0%
!!! ACATAATCTAGTTGTATTTT+TGG - chr4_3:10486973-10486992 None:intergenic 20.0%
!!! GATATATTTTTTTTTGAAGG+AGG - chr4_3:10487696-10487715 None:intergenic 20.0%
!!! AGGGATATATTTTTTTTTGA+AGG - chr4_3:10487699-10487718 None:intergenic 20.0%
!! AGATAAATAAGTGGAAAATT+TGG + chr4_3:10487821-10487840 Msa0629600:intron 20.0%
!! TTACTCAATTATTACTAGTT+TGG + chr4_3:10488038-10488057 Msa0629600:intron 20.0%
!! TATGGACACAAATATAAATA+AGG - chr4_3:10488065-10488084 None:intergenic 20.0%
!! AACTATAATGATTAGATCTT+TGG - chr4_3:10488098-10488117 None:intergenic 20.0%
!! TTGAGTCATTATTATCATAT+TGG + chr4_3:10488139-10488158 Msa0629600:intron 20.0%
!! TTTCTTTGGTAAAATAACTA+TGG - chr4_3:10488338-10488357 None:intergenic 20.0%
!!! ATAGTTATTTTACCAAAGAA+AGG + chr4_3:10488337-10488356 Msa0629600:CDS 20.0%
!! ATGTTTCCATTAACATTAAT+TGG + chr4_3:10488596-10488615 Msa0629600:intron 20.0%
!! AGAATTCCAATTAATGTTAA+TGG - chr4_3:10488605-10488624 None:intergenic 20.0%
!! CCCCTATAAAAAATTAAAAA+AGG + chr4_3:10488858-10488877 Msa0629600:intron 20.0%
!!! AGATTTGAACCTAAATTTTT+TGG - chr4_3:10489096-10489115 None:intergenic 20.0%
!!! TTTTTAAAGGAACATTAACT+GGG - chr4_3:10489589-10489608 None:intergenic 20.0%
!!! ATTTTTAAAGGAACATTAAC+TGG - chr4_3:10489590-10489609 None:intergenic 20.0%
!!! AGTGAATGATCAATTTTTAA+AGG - chr4_3:10489602-10489621 None:intergenic 20.0%
!!! TTTTTTTTACTGTTGGATTA+GGG + chr4_3:10489621-10489640 Msa0629600:CDS 20.0%
!!! AGAAAATAAGTATTTTTACC+TGG - chr4_3:10490103-10490122 None:intergenic 20.0%
!! AGATTTAACAAAATTTGAAC+CGG + chr4_3:10490228-10490247 Msa0629600:intron 20.0%
!!! TTGTTTTAAAATTGTAGCAA+AGG - chr4_3:10490367-10490386 None:intergenic 20.0%
!! TTCAATGTCTTGTATTATAT+AGG + chr4_3:10490489-10490508 Msa0629600:intron 20.0%
!! CTCATTCAAAAAACAATTTA+TGG - chr4_3:10490787-10490806 None:intergenic 20.0%
!! GTTCAAGCATATTTAATAAA+TGG + chr4_3:10490822-10490841 Msa0629600:three_prime_UTR 20.0%
! CTACAAATTTCATGTAAGTA+AGG + chr4_3:10486286-10486305 Msa0629600:intron 25.0%
! ATAAGCTCTCATCATTATTA+CGG + chr4_3:10486791-10486810 Msa0629600:intron 25.0%
!! TTTTCTCATTGTGTTATGTA+TGG - chr4_3:10486857-10486876 None:intergenic 25.0%
! TGCATCTTAGAAGTTAAAAA+AGG - chr4_3:10487492-10487511 None:intergenic 25.0%
!!! GATATATTTTTTTGTTGGTC+AGG - chr4_3:10487673-10487692 None:intergenic 25.0%
!!! GTTTTTTTTTCTGAAGGATA+GGG - chr4_3:10487718-10487737 None:intergenic 25.0%
!!! TGTTTTTTTTTCTGAAGGAT+AGG - chr4_3:10487719-10487738 None:intergenic 25.0%
! CATCTCATAAGATAAATAAG+TGG + chr4_3:10487812-10487831 Msa0629600:intron 25.0%
!! ATCTTTGGAAAATTCTACTA+TGG - chr4_3:10488083-10488102 None:intergenic 25.0%
! ACAATTGTTTCAATTTGGAA+TGG - chr4_3:10489314-10489333 None:intergenic 25.0%
! CTATCACAATTGTTTCAATT+TGG - chr4_3:10489319-10489338 None:intergenic 25.0%
! TTAAAAGCAAACCAAAAATC+TGG + chr4_3:10489365-10489384 Msa0629600:CDS 25.0%
!! CTAAGTATTTTCCAGATTTT+TGG - chr4_3:10489379-10489398 None:intergenic 25.0%
!!! CATTCACTTTTTTTTACTGT+TGG + chr4_3:10489614-10489633 Msa0629600:CDS 25.0%
!!! CTTTTTTTTACTGTTGGATT+AGG + chr4_3:10489620-10489639 Msa0629600:CDS 25.0%
!!! TTTTTTTACTGTTGGATTAG+GGG + chr4_3:10489622-10489641 Msa0629600:CDS 25.0%
!! TTATAAATATGAGGTGGATT+TGG - chr4_3:10489791-10489810 None:intergenic 25.0%
! GTGAAATTATAAATATGAGG+TGG - chr4_3:10489797-10489816 None:intergenic 25.0%
! CCAGTGAAATTATAAATATG+AGG - chr4_3:10489800-10489819 None:intergenic 25.0%
! CCTCATATTTATAATTTCAC+TGG + chr4_3:10489797-10489816 Msa0629600:CDS 25.0%
!!! AATTTCTTTGTTGTTGGTAA+AGG + chr4_3:10489956-10489975 Msa0629600:CDS 25.0%
! GATTTAACAAAATTTGAACC+GGG + chr4_3:10490229-10490248 Msa0629600:intron 25.0%
! TCTTGTATTATATAGGAGTT+TGG + chr4_3:10490496-10490515 Msa0629600:intron 25.0%
! AATGTTCATACAATTCACAA+AGG + chr4_3:10490656-10490675 Msa0629600:three_prime_UTR 25.0%
! ATGTTCATACAATTCACAAA+GGG + chr4_3:10490657-10490676 Msa0629600:three_prime_UTR 25.0%
! CAAAAATAAAAGAGAGTGAA+GGG + chr4_3:10490735-10490754 Msa0629600:three_prime_UTR 25.0%
! AGATTGTGCATATGTATTAT+TGG + chr4_3:10490884-10490903 Msa0629600:three_prime_UTR 25.0%
!! GTGTTTGGTTTAATACAAAA+GGG + chr4_3:10490935-10490954 Msa0629600:three_prime_UTR 25.0%
!!! TTGATTAGTTTAGCTAAATG+TGG + chr4_3:10490978-10490997 Msa0629600:three_prime_UTR 25.0%
!!! TCAATTTTTTTCGTTTTGAG+AGG + chr4_3:10491004-10491023 Msa0629600:three_prime_UTR 25.0%
! GAATTTTCTTTTGCAACTTC+AGG - chr4_3:10486152-10486171 None:intergenic 30.0%
!! AAATGTTAACTTGTGCTTTC+AGG + chr4_3:10486544-10486563 Msa0629600:intron 30.0%
!! AATGTTAACTTGTGCTTTCA+GGG + chr4_3:10486545-10486564 Msa0629600:intron 30.0%
GTATGATTAATATTGAGTGC+AGG + chr4_3:10486941-10486960 Msa0629600:intron 30.0%
AAAGCAATTGTCACAGTTAA+TGG + chr4_3:10486999-10487018 Msa0629600:CDS 30.0%
AAGCAATTGTCACAGTTAAT+GGG + chr4_3:10487000-10487019 Msa0629600:CDS 30.0%
GAATAAGAATGTCTAACCAA+TGG - chr4_3:10487112-10487131 None:intergenic 30.0%
GGATATTGCATATTATATGC+AGG + chr4_3:10487226-10487245 Msa0629600:intron 30.0%
ACAATTTAATTGTGGAGAAG+TGG - chr4_3:10487277-10487296 None:intergenic 30.0%
!! TTTTTGGTCAAGTAGCATAA+TGG - chr4_3:10487311-10487330 None:intergenic 30.0%
!! AGTTTTTGAAAGTCCAAAGT+CGG + chr4_3:10487567-10487586 Msa0629600:intron 30.0%
!!! TTTGTTGGTCAGGTTTTTTA+AGG - chr4_3:10487663-10487682 None:intergenic 30.0%
!!! GGAGGGATATATTTTTTTGT+TGG - chr4_3:10487678-10487697 None:intergenic 30.0%
!!! AGGGATGTTTTTTTTTCTGA+AGG - chr4_3:10487724-10487743 None:intergenic 30.0%
GTCATTATTATCATATTGGC+AGG + chr4_3:10488143-10488162 Msa0629600:intron 30.0%
TTGTATGTATAACTATGTCC+TGG - chr4_3:10488238-10488257 None:intergenic 30.0%
ACATACAATTTCACCATTAC+TGG + chr4_3:10488250-10488269 Msa0629600:CDS 30.0%
!!! GATGAATTGGTTTTGGTATT+AGG + chr4_3:10488388-10488407 Msa0629600:CDS 30.0%
GGTGATGATTGAAAAATTGT+AGG + chr4_3:10488641-10488660 Msa0629600:intron 30.0%
ATTGAAAAATTGTAGGAGAG+TGG + chr4_3:10488648-10488667 Msa0629600:intron 30.0%
!! ATCAATGAAGCTCTAAAATC+AGG + chr4_3:10488695-10488714 Msa0629600:CDS 30.0%
AATACCTTGTGTAGAACAAT+TGG - chr4_3:10488777-10488796 None:intergenic 30.0%
TCATCAGCTTCTTAAAATCA+CGG - chr4_3:10488986-10489005 None:intergenic 30.0%
! ATTGATGATTCTTAGTAGGT+AGG - chr4_3:10489210-10489229 None:intergenic 30.0%
! GAACTTTTCTTCAAAATAGC+TGG + chr4_3:10489245-10489264 Msa0629600:CDS 30.0%
TGAATAATGTAATGTAGCAG+TGG - chr4_3:10489453-10489472 None:intergenic 30.0%
ACTGCTACATTACATTATTC+AGG + chr4_3:10489452-10489471 Msa0629600:CDS 30.0%
!! ATTTGTGTAGCATTTTTAGG+TGG - chr4_3:10489518-10489537 None:intergenic 30.0%
! GCAATTTGTGTAGCATTTTT+AGG - chr4_3:10489521-10489540 None:intergenic 30.0%
AACATTAACTGGGTATTTCT+TGG - chr4_3:10489579-10489598 None:intergenic 30.0%
ATTTATAATTTCACTGGTGC+TGG + chr4_3:10489803-10489822 Msa0629600:CDS 30.0%
!! CTTGTAGTGTTCAAGTTTTT+AGG - chr4_3:10489830-10489849 None:intergenic 30.0%
AAAAACTTGAACACTACAAG+TGG + chr4_3:10489830-10489849 Msa0629600:CDS 30.0%
! GGTTTCAATTTCTTTGTTGT+TGG + chr4_3:10489950-10489969 Msa0629600:CDS 30.0%
TCAACAAGGTTAAACTTCTT+TGG - chr4_3:10490010-10490029 None:intergenic 30.0%
ATAATCGAGATCAAATCAAC+AGG - chr4_3:10490189-10490208 None:intergenic 30.0%
CATTGTTTAATTGGTGCAAT+CGG - chr4_3:10490321-10490340 None:intergenic 30.0%
! CTTGTACTTGCCTTTTAATA+GGG + chr4_3:10490454-10490473 Msa0629600:intron 30.0%
!! CAACATTTTGGAAGATCTTT+TGG - chr4_3:10490621-10490640 None:intergenic 30.0%
! TGTGAGGAATATCAACATTT+TGG - chr4_3:10490633-10490652 None:intergenic 30.0%
TTGTATGAACATTTGATGTG+AGG - chr4_3:10490649-10490668 None:intergenic 30.0%
GCAAAAATAAAAGAGAGTGA+AGG + chr4_3:10490734-10490753 Msa0629600:three_prime_UTR 30.0%
!!! TTGTTTTTTGAATGAGCAGA+AGG + chr4_3:10490791-10490810 Msa0629600:three_prime_UTR 30.0%
!!! TGTTTTTTGAATGAGCAGAA+GGG + chr4_3:10490792-10490811 Msa0629600:three_prime_UTR 30.0%
! TAAATGGAGTATGCACATTT+TGG + chr4_3:10490838-10490857 Msa0629600:three_prime_UTR 30.0%
! GGTGTTTGGTTTAATACAAA+AGG + chr4_3:10490934-10490953 Msa0629600:three_prime_UTR 30.0%
!!! ATTTTTTTCGTTTTGAGAGG+AGG + chr4_3:10491007-10491026 Msa0629600:three_prime_UTR 30.0%
AGGTATTCACAATTATTGAG+AGG + chr4_3:10491027-10491046 Msa0629600:three_prime_UTR 30.0%
AGTGAGTGAAAATGGTTTCT+TGG + chr4_3:10486201-10486220 Msa0629600:exon 35.0%
TTGTTGCATATTTCCAGCTT+TGG + chr4_3:10486244-10486263 Msa0629600:CDS 35.0%
TTTCTTAACATGTGCCCTAA+GGG + chr4_3:10486685-10486704 Msa0629600:intron 35.0%
GGTGAGAGCTTATAAATACA+GGG - chr4_3:10486726-10486745 None:intergenic 35.0%
TGGTGAGAGCTTATAAATAC+AGG - chr4_3:10486727-10486746 None:intergenic 35.0%
ATATTGTGCACACGTGATAA+TGG - chr4_3:10486747-10486766 None:intergenic 35.0%
TGATTAATATTGAGTGCAGG+TGG + chr4_3:10486944-10486963 Msa0629600:intron 35.0%
ACCACAATATTACCATCCAT+TGG + chr4_3:10487093-10487112 Msa0629600:CDS 35.0%
ACCAATGGATGGTAATATTG+TGG - chr4_3:10487097-10487116 None:intergenic 35.0%
AAGAATGTCTAACCAATGGA+TGG - chr4_3:10487108-10487127 None:intergenic 35.0%
GAGCTCACACAATTTAATTG+TGG - chr4_3:10487285-10487304 None:intergenic 35.0%
GTAGAAACATTGCAATGTGA+GGG - chr4_3:10487862-10487881 None:intergenic 35.0%
! TAGTGAGTCTTTTGCTTAGT+TGG - chr4_3:10487884-10487903 None:intergenic 35.0%
TATTATCATATTGGCAGGCA+TGG + chr4_3:10488148-10488167 Msa0629600:intron 35.0%
TAACTATGTCCTGGTTGAAT+TGG - chr4_3:10488229-10488248 None:intergenic 35.0%
TTTGGCATGCACATGTTAAT+TGG + chr4_3:10488290-10488309 Msa0629600:CDS 35.0%
GTAAAATAACTATGGCACCA+TGG - chr4_3:10488330-10488349 None:intergenic 35.0%
ACCAAAACCAATTCATCATC+TGG - chr4_3:10488385-10488404 None:intergenic 35.0%
!! TGAAGCTCTAAAATCAGGAA+TGG + chr4_3:10488700-10488719 Msa0629600:CDS 35.0%
! GTATGAGCATCTGAAACATT+TGG - chr4_3:10488728-10488747 None:intergenic 35.0%
TCAGATGCTCATACCATAAA+TGG + chr4_3:10488734-10488753 Msa0629600:CDS 35.0%
!!! TTTTAGTCTTAGTGCCTGTT+TGG + chr4_3:10488907-10488926 Msa0629600:intron 35.0%
TTATTAAGTGCCTGTTTGGA+TGG - chr4_3:10489072-10489091 None:intergenic 35.0%
TGGTTTATTAAGTGCCTGTT+TGG - chr4_3:10489076-10489095 None:intergenic 35.0%
AGATGTTTACAAACTACCTG+TGG + chr4_3:10489172-10489191 Msa0629600:intron 35.0%
!! CAGCATTGATGATTCTTAGT+AGG - chr4_3:10489214-10489233 None:intergenic 35.0%
!! AGTACATTTGTTGTTTGACC+AGG - chr4_3:10489344-10489363 None:intergenic 35.0%
GTTAAATTGTCTACAGCAAC+AGG - chr4_3:10489428-10489447 None:intergenic 35.0%
AGGTGTAGTTAGAAATGTTG+GGG - chr4_3:10489495-10489514 None:intergenic 35.0%
GAGGTGTAGTTAGAAATGTT+GGG - chr4_3:10489496-10489515 None:intergenic 35.0%
GCTTGTAATAAAGCTGTAGT+TGG - chr4_3:10489725-10489744 None:intergenic 35.0%
! TAAATATGAGGTGGATTTGG+TGG - chr4_3:10489788-10489807 None:intergenic 35.0%
TTGAAACCATGAAGATGAAC+AGG - chr4_3:10489938-10489957 None:intergenic 35.0%
!! TTTGTTGTTGGTAAAGGAGT+TGG + chr4_3:10489962-10489981 Msa0629600:CDS 35.0%
AAAATGCCGATCAATTCAAC+AGG + chr4_3:10490144-10490163 Msa0629600:intron 35.0%
CCTCAGGATCATTGTTTAAT+TGG - chr4_3:10490330-10490349 None:intergenic 35.0%
CCAATTAAACAATGATCCTG+AGG + chr4_3:10490327-10490346 Msa0629600:intron 35.0%
CCTATTAAAAGGCAAGTACA+AGG - chr4_3:10490456-10490475 None:intergenic 35.0%
! CCTTGTACTTGCCTTTTAAT+AGG + chr4_3:10490453-10490472 Msa0629600:intron 35.0%
!! TCTAAAGATGGCATTTTTGG+TGG + chr4_3:10490557-10490576 Msa0629600:CDS 35.0%
!! CATTTTGGAAGATCTTTTGG+TGG - chr4_3:10490618-10490637 None:intergenic 35.0%
TACAATTCACAAAGGGTAGT+AGG + chr4_3:10490664-10490683 Msa0629600:three_prime_UTR 35.0%
!! CCTACTTTTGTGAATTTGGA+AGG - chr4_3:10490690-10490709 None:intergenic 35.0%
CCTTCCAAATTCACAAAAGT+AGG + chr4_3:10490687-10490706 Msa0629600:three_prime_UTR 35.0%
!! CACACCTACTTTTGTGAATT+TGG - chr4_3:10490694-10490713 None:intergenic 35.0%
CAAATTCACAAAAGTAGGTG+TGG + chr4_3:10490692-10490711 Msa0629600:three_prime_UTR 35.0%
!!! CACTCTCTTTTATTTTTGCC+TGG - chr4_3:10490733-10490752 None:intergenic 35.0%
AAAGAGAGTGAAGGGAAAAA+AGG + chr4_3:10490743-10490762 Msa0629600:three_prime_UTR 35.0%
! AGTCAAAAGTGTACACTTGT+TGG - chr4_3:10490912-10490931 None:intergenic 35.0%
!!! CAAGTGTACACTTTTGACTT+TGG + chr4_3:10490913-10490932 Msa0629600:three_prime_UTR 35.0%
!!! ACACTTTTGACTTTGGTGTT+TGG + chr4_3:10490920-10490939 Msa0629600:three_prime_UTR 35.0%
AGTGAGTGAGTGAGTGAAAA+TGG + chr4_3:10486193-10486212 Msa0629600:exon 40.0%
GTTTCTTAACATGTGCCCTA+AGG + chr4_3:10486684-10486703 Msa0629600:intron 40.0%
GAGAGCTTATAAATACAGGG+TGG - chr4_3:10486723-10486742 None:intergenic 40.0%
TTAATATTGAGTGCAGGTGG+TGG + chr4_3:10486947-10486966 Msa0629600:intron 40.0%
CACAGTTAATGGGAAGTTTC+CGG + chr4_3:10487010-10487029 Msa0629600:CDS 40.0%
ACAGTTAATGGGAAGTTTCC+GGG + chr4_3:10487011-10487030 Msa0629600:CDS 40.0%
TATCACTGTATCATCTTCCC+TGG - chr4_3:10487051-10487070 None:intergenic 40.0%
CATATTATATGCAGGAGCCA+GGG + chr4_3:10487234-10487253 Msa0629600:intron 40.0%
!! AATTAGTGAAGCACCGACTT+TGG - chr4_3:10487583-10487602 None:intergenic 40.0%
!! AGTCGGTGCTTCACTAATTT+TGG + chr4_3:10487584-10487603 Msa0629600:intron 40.0%
GGTAGAAACATTGCAATGTG+AGG - chr4_3:10487863-10487882 None:intergenic 40.0%
ATATTGGCAGGCATGGTATT+AGG + chr4_3:10488155-10488174 Msa0629600:intron 40.0%
TTCACCATTACTGGTCAAAG+AGG + chr4_3:10488259-10488278 Msa0629600:CDS 40.0%
TGTTCCTCTTTGACCAGTAA+TGG - chr4_3:10488266-10488285 None:intergenic 40.0%
GTCAAAGAGGAACACTTCTT+TGG + chr4_3:10488272-10488291 Msa0629600:CDS 40.0%
GGATAAGGAACACCTTTCTT+TGG - chr4_3:10488352-10488371 None:intergenic 40.0%
!! CCAATTCATCATCTGGCTTT+GGG - chr4_3:10488378-10488397 None:intergenic 40.0%
! ACCAATTCATCATCTGGCTT+TGG - chr4_3:10488379-10488398 None:intergenic 40.0%
!! GCCAGATGATGAATTGGTTT+TGG + chr4_3:10488381-10488400 Msa0629600:CDS 40.0%
GAAAAATTGTAGGAGAGTGG+TGG + chr4_3:10488651-10488670 Msa0629600:intron 40.0%
CATACCATAAATGGTCTTCC+TGG + chr4_3:10488743-10488762 Msa0629600:CDS 40.0%
TGTTCCAGGAAGACCATTTA+TGG - chr4_3:10488750-10488769 None:intergenic 40.0%
TTGAAGCTTCTGCGTTAAAG+TGG + chr4_3:10489006-10489025 Msa0629600:intron 40.0%
CTTCTACTACTGTGAGTTTG+TGG - chr4_3:10489271-10489290 None:intergenic 40.0%
GAAACAATTGTGATAGCACC+TGG + chr4_3:10489323-10489342 Msa0629600:CDS 40.0%
! AGTAGCAGCTTCACCTTTTA+TGG + chr4_3:10489397-10489416 Msa0629600:CDS 40.0%
! GGAGGTGTAGTTAGAAATGT+TGG - chr4_3:10489497-10489516 None:intergenic 40.0%
!!! TGTGTAGCATTTTTAGGTGG+AGG - chr4_3:10489515-10489534 None:intergenic 40.0%
CCATTTGCAGCTTTACATGA+AGG - chr4_3:10489659-10489678 None:intergenic 40.0%
CCTTCATGTAAAGCTGCAAA+TGG + chr4_3:10489656-10489675 Msa0629600:CDS 40.0%
!! CAGCTTGTTATGCAAGATAC+TGG + chr4_3:10489890-10489909 Msa0629600:CDS 40.0%
AACCATCCTGTTCATCTTCA+TGG + chr4_3:10489929-10489948 Msa0629600:CDS 40.0%
AACCATGAAGATGAACAGGA+TGG - chr4_3:10489934-10489953 None:intergenic 40.0%
ACCTTGTTGATCCTGTTGAA+AGG + chr4_3:10490020-10490039 Msa0629600:CDS 40.0%
TCCTTTCAACAGGATCAACA+AGG - chr4_3:10490024-10490043 None:intergenic 40.0%
CCAATAGTGTTCCTTTCAAC+AGG - chr4_3:10490034-10490053 None:intergenic 40.0%
CCTGTTGAAAGGAACACTAT+TGG + chr4_3:10490031-10490050 Msa0629600:CDS 40.0%
AGATTCAGAGCTGATAATCC+AGG + chr4_3:10490082-10490101 Msa0629600:CDS 40.0%
GTTCGACCTGTTGAATTGAT+CGG - chr4_3:10490153-10490172 None:intergenic 40.0%
GATCAAATCAACAGGCCAAA+TGG - chr4_3:10490181-10490200 None:intergenic 40.0%
AAACAAAACAACGGTTCACC+CGG - chr4_3:10490250-10490269 None:intergenic 40.0%
! CAATGATCCTGAGGTTTTAC+TGG + chr4_3:10490336-10490355 Msa0629600:intron 40.0%
TTGGTTCATGCATTGCCATT+TGG + chr4_3:10490515-10490534 Msa0629600:CDS 40.0%
ATGTTGTATGCACCTCCAAA+TGG - chr4_3:10490533-10490552 None:intergenic 40.0%
! ATTTGGAGGTGCATACAACA+TGG + chr4_3:10490532-10490551 Msa0629600:CDS 40.0%
! TTTGGAGGTGCATACAACAT+GGG + chr4_3:10490533-10490552 Msa0629600:CDS 40.0%
TACAACATGGGGTCTAAAGA+TGG + chr4_3:10490545-10490564 Msa0629600:CDS 40.0%
! GGGTCTAAAGATGGCATTTT+TGG + chr4_3:10490554-10490573 Msa0629600:CDS 40.0%
!!! ATGGCATTTTTGGTGGACAA+TGG + chr4_3:10490564-10490583 Msa0629600:CDS 40.0%
!! TTTTTGGTGGACAATGGCAA+AGG + chr4_3:10490570-10490589 Msa0629600:CDS 40.0%
! GGAGCTATCACTGATTGTTT+AGG - chr4_3:10490597-10490616 None:intergenic 40.0%
ATTCACAAAAGTAGGTGTGG+AGG + chr4_3:10490695-10490714 Msa0629600:three_prime_UTR 40.0%
TTCACAAAAGTAGGTGTGGA+GGG + chr4_3:10490696-10490715 Msa0629600:three_prime_UTR 40.0%
CTTTGGTCGAGTGCAAAGTT+AGG + chr4_3:10486261-10486280 Msa0629600:CDS 45.0%
!! GGTGTTAACTTGTGCCCTTA+GGG - chr4_3:10486702-10486721 None:intergenic 45.0%
!! TGGTGTTAACTTGTGCCCTT+AGG - chr4_3:10486703-10486722 None:intergenic 45.0%
TCTTCCCTGGCATAAAGAGT+GGG - chr4_3:10487038-10487057 None:intergenic 45.0%
ATCTTCCCTGGCATAAAGAG+TGG - chr4_3:10487039-10487058 None:intergenic 45.0%
CCAACTGAGCTAAGCTCATA+GGG - chr4_3:10487203-10487222 None:intergenic 45.0%
ACCAACTGAGCTAAGCTCAT+AGG - chr4_3:10487204-10487223 None:intergenic 45.0%
ATGAGCTTAGCTCAGTTGGT+AGG + chr4_3:10487204-10487223 Msa0629600:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+GGG + chr4_3:10487205-10487224 Msa0629600:intron 45.0%
GCATATTATATGCAGGAGCC+AGG + chr4_3:10487233-10487252 Msa0629600:intron 45.0%
! TGTGGAGAAGTGGAGTGTTT+GGG - chr4_3:10487267-10487286 None:intergenic 45.0%
! TTGTGGAGAAGTGGAGTGTT+TGG - chr4_3:10487268-10487287 None:intergenic 45.0%
GGCATGGTATTAGGCAATTG+AGG + chr4_3:10488164-10488183 Msa0629600:intron 45.0%
GGTATTAGGCAATTGAGGAC+AGG + chr4_3:10488169-10488188 Msa0629600:CDS 45.0%
TTAGGCAATTGAGGACAGGT+TGG + chr4_3:10488173-10488192 Msa0629600:CDS 45.0%
TAGGCAATTGAGGACAGGTT+GGG + chr4_3:10488174-10488193 Msa0629600:CDS 45.0%
GGACACTGTGTGATATATGC+AGG - chr4_3:10488208-10488227 None:intergenic 45.0%
ACACAGTGTCCAATTCAACC+AGG + chr4_3:10488217-10488236 Msa0629600:CDS 45.0%
TGGCTAAGATCAACTGTCCA+TGG + chr4_3:10488310-10488329 Msa0629600:CDS 45.0%
!! TCTGGCTTTGGGAAAGGATA+AGG - chr4_3:10488367-10488386 None:intergenic 45.0%
!! TCATCATCTGGCTTTGGGAA+AGG - chr4_3:10488373-10488392 None:intergenic 45.0%
CCCAAAGCCAGATGATGAAT+TGG + chr4_3:10488375-10488394 Msa0629600:CDS 45.0%
AAATGGTCTTCCTGGAACAG+TGG + chr4_3:10488751-10488770 Msa0629600:CDS 45.0%
GTGGCCAATTGTTCTACACA+AGG + chr4_3:10488770-10488789 Msa0629600:CDS 45.0%
TATCAAACGCCACTCCAAAC+AGG - chr4_3:10488924-10488943 None:intergenic 45.0%
TTGCAATCGTCCATCCAAAC+AGG + chr4_3:10489059-10489078 Msa0629600:intron 45.0%
TACAAACTACCTGTGGAGAG+TGG + chr4_3:10489179-10489198 Msa0629600:CDS 45.0%
GCAACAGGTGCATCCATAAA+AGG - chr4_3:10489413-10489432 None:intergenic 45.0%
GCAGCTTTACATGAAGGACA+AGG - chr4_3:10489653-10489672 None:intergenic 45.0%
AGATGAACAGGATGGTTCTC+AGG - chr4_3:10489926-10489945 None:intergenic 45.0%
AACACTATTGGTGTACCAGC+TGG + chr4_3:10490043-10490062 Msa0629600:CDS 45.0%
ATCAACAGGCCAAATGGCTA+TGG - chr4_3:10490175-10490194 None:intergenic 45.0%
! GTTCATGCATTGCCATTTGG+AGG + chr4_3:10490518-10490537 Msa0629600:CDS 45.0%
! TTGGAGGTGCATACAACATG+GGG + chr4_3:10490534-10490553 Msa0629600:CDS 45.0%
!!! ATAAGAATTTTTTTTTTTAA+AGG - chr4_3:10487139-10487158 None:intergenic 5.0%
!! AAATATTATTAACAATAAAA+TGG - chr4_3:10487427-10487446 None:intergenic 5.0%
!!! AAAAGTTTTTTTTTTTTTTT+AGG - chr4_3:10487993-10488012 None:intergenic 5.0%
ACTTTGCACTCGACCAAAGC+TGG - chr4_3:10486260-10486279 None:intergenic 50.0%
CCCTATGAGCTTAGCTCAGT+TGG + chr4_3:10487200-10487219 Msa0629600:intron 50.0%
! GTGGAGAAGTGGAGTGTTTG+GGG - chr4_3:10487266-10487285 None:intergenic 50.0%
GAACAATTGGCCACTGTTCC+AGG - chr4_3:10488764-10488783 None:intergenic 50.0%
GTCTTAGTGCCTGTTTGGAG+TGG + chr4_3:10488912-10488931 Msa0629600:intron 50.0%
! TAGGTTTTGCCACTCTCCAC+AGG - chr4_3:10489191-10489210 None:intergenic 50.0%
ACTATTGGTGTACCAGCTGG+TGG + chr4_3:10490046-10490065 Msa0629600:CDS 50.0%
CAGGTCGAACCATAGCCATT+TGG + chr4_3:10490163-10490182 Msa0629600:intron 50.0%
GGCTGAACCAGTAAAACCTC+AGG - chr4_3:10490346-10490365 None:intergenic 50.0%
CTGGCATAAAGAGTGGGTCC+CGG - chr4_3:10487032-10487051 None:intergenic 55.0%
GGGACCCACTCTTTATGCCA+GGG + chr4_3:10487031-10487050 Msa0629600:CDS 55.0%
! AGTGTTTGGGGTTCGAACCC+TGG - chr4_3:10487254-10487273 None:intergenic 55.0%
! TTGAGGACAGGTTGGGCTGA+TGG + chr4_3:10488181-10488200 Msa0629600:CDS 55.0%
TTGGTGTACCAGCTGGTGGT+TGG + chr4_3:10490050-10490069 Msa0629600:CDS 55.0%
TGGTGTACCAGCTGGTGGTT+GGG + chr4_3:10490051-10490070 Msa0629600:CDS 55.0%
ATTGCAACCCAACCACCAGC+TGG - chr4_3:10490061-10490080 None:intergenic 55.0%
GTAGGTGTGGAGGGATACAG+AGG + chr4_3:10490705-10490724 Msa0629600:three_prime_UTR 55.0%
CGGGACCCACTCTTTATGCC+AGG + chr4_3:10487030-10487049 Msa0629600:CDS 60.0%
TGGAGGGATACAGAGGAGCC+AGG + chr4_3:10490712-10490731 Msa0629600:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 10486126 10491071 10486126 ID=Msa0629600;Name=Msa0629600
chr4_3 mRNA 10486126 10491071 10486126 ID=Msa0629600-mRNA-1;Parent=Msa0629600;Name=Msa0629600-mRNA-1;_AED=0.03;_eAED=0.03;_QI=86|1|1|1|1|1|6|430|557
chr4_3 exon 10486126 10486298 10486126 ID=Msa0629600-mRNA-1:exon:3234;Parent=Msa0629600-mRNA-1
chr4_3 exon 10486963 10487114 10486963 ID=Msa0629600-mRNA-1:exon:3235;Parent=Msa0629600-mRNA-1
chr4_3 exon 10488165 10488409 10488165 ID=Msa0629600-mRNA-1:exon:3236;Parent=Msa0629600-mRNA-1
chr4_3 exon 10488663 10488791 10488663 ID=Msa0629600-mRNA-1:exon:3237;Parent=Msa0629600-mRNA-1
chr4_3 exon 10489174 10490103 10489174 ID=Msa0629600-mRNA-1:exon:3238;Parent=Msa0629600-mRNA-1
chr4_3 exon 10490511 10491071 10490511 ID=Msa0629600-mRNA-1:exon:3239;Parent=Msa0629600-mRNA-1
chr4_3 five_prime_UTR 10486126 10486211 10486126 ID=Msa0629600-mRNA-1:five_prime_utr;Parent=Msa0629600-mRNA-1
chr4_3 CDS 10486212 10486298 10486212 ID=Msa0629600-mRNA-1:cds;Parent=Msa0629600-mRNA-1
chr4_3 CDS 10486963 10487114 10486963 ID=Msa0629600-mRNA-1:cds;Parent=Msa0629600-mRNA-1
chr4_3 CDS 10488165 10488409 10488165 ID=Msa0629600-mRNA-1:cds;Parent=Msa0629600-mRNA-1
chr4_3 CDS 10488663 10488791 10488663 ID=Msa0629600-mRNA-1:cds;Parent=Msa0629600-mRNA-1
chr4_3 CDS 10489174 10490103 10489174 ID=Msa0629600-mRNA-1:cds;Parent=Msa0629600-mRNA-1
chr4_3 CDS 10490511 10490641 10490511 ID=Msa0629600-mRNA-1:cds;Parent=Msa0629600-mRNA-1
chr4_3 three_prime_UTR 10490642 10491071 10490642 ID=Msa0629600-mRNA-1:three_prime_utr;Parent=Msa0629600-mRNA-1
Gene Sequence

>Msa0629600

ATGGTTTCTTGGATTCGAGTACTACTTCTTATTTGTTGCATATTTCCAGCTTTGGTCGAGTGCAAAGTTAGGCACTACAAATTTCATGTGGTGGCCAAAAATACAACTAGATTATGTTCAAGCAAAGCAATTGTCACAGTTAATGGGAAGTTTCCGGGACCCACTCTTTATGCCAGGGAAGATGATACAGTGATAGTCAAAGTTCGTAACAAAGTCAACCACAATATTACCATCCATTGGCATGGTATTAGGCAATTGAGGACAGGTTGGGCTGATGGACCTGCATATATCACACAGTGTCCAATTCAACCAGGACATAGTTATACATACAATTTCACCATTACTGGTCAAAGAGGAACACTTCTTTGGCATGCACATGTTAATTGGCTAAGATCAACTGTCCATGGTGCCATAGTTATTTTACCAAAGAAAGGTGTTCCTTATCCTTTCCCAAAGCCAGATGATGAATTGGTTTTGGTATTAGGAGAGTGGTGGAAATCTGATACTGAAGCTGTTATCAATGAAGCTCTAAAATCAGGAATGGCACCAAATGTTTCAGATGCTCATACCATAAATGGTCTTCCTGGAACAGTGGCCAATTGTTCTACACAAGATGTTTACAAACTACCTGTGGAGAGTGGCAAAACCTACCTACTAAGAATCATCAATGCTGCACTCAATGAAGAACTTTTCTTCAAAATAGCTGGCCACAAACTCACAGTAGTAGAAGTTGATGCAACATACACAAAACCATTCCAAATTGAAACAATTGTGATAGCACCTGGTCAAACAACAAATGTACTATTAAAAGCAAACCAAAAATCTGGAAAATACTTAGTAGCAGCTTCACCTTTTATGGATGCACCTGTTGCTGTAGACAATTTAACAGCCACTGCTACATTACATTATTCAGGAACTACTCTTACAAACACCCCAACATTTCTAACTACACCTCCACCTAAAAATGCTACACAAATTGCTAATAATTTTTTAAACTCACTTAAAGGACTTAATTCCAAGAAATACCCAGTTAATGTTCCTTTAAAAATTGATCATTCACTTTTTTTTACTGTTGGATTAGGGGTTAATCCTTGTCCTTCATGTAAAGCTGCAAATGGTAGTAGAGTTGTAGCTGCTATTAATAATGTTACATTTGTTATGCCAACTACAGCTTTATTACAAGCACATTATTTCAACATTAAAAATGTTTTTACTACAGATTTTCCACCAAATCCACCTCATATTTATAATTTCACTGGTGCTGGACCTAAAAACTTGAACACTACAAGTGGTACAAAGTTATATAAGTTATCATTTAATGATACTGTTCAGCTTGTTATGCAAGATACTGGAATCATTGCACCTGAGAACCATCCTGTTCATCTTCATGGTTTCAATTTCTTTGTTGTTGGTAAAGGAGTTGGAAATTATGATAGTAAAAATGATCCAAAGAAGTTTAACCTTGTTGATCCTGTTGAAAGGAACACTATTGGTGTACCAGCTGGTGGTTGGGTTGCAATTAGATTCAGAGCTGATAATCCAGGAGTTTGGTTCATGCATTGCCATTTGGAGGTGCATACAACATGGGGTCTAAAGATGGCATTTTTGGTGGACAATGGCAAAGGTCCTAAACAATCAGTGATAGCTCCACCAAAAGATCTTCCAAAATGTTGA
Protein sequence

>Msa0629600

MVSWIRVLLLICCIFPALVECKVRHYKFHVVAKNTTRLCSSKAIVTVNGKFPGPTLYAREDDTVIVKVRNKVNHNITIHWHGIRQLRTGWADGPAYITQCPIQPGHSYTYNFTITGQRGTLLWHAHVNWLRSTVHGAIVILPKKGVPYPFPKPDDELVLVLGEWWKSDTEAVINEALKSGMAPNVSDAHTINGLPGTVANCSTQDVYKLPVESGKTYLLRIINAALNEELFFKIAGHKLTVVEVDATYTKPFQIETIVIAPGQTTNVLLKANQKSGKYLVAASPFMDAPVAVDNLTATATLHYSGTTLTNTPTFLTTPPPKNATQIANNFLNSLKGLNSKKYPVNVPLKIDHSLFFTVGLGVNPCPSCKAANGSRVVAAINNVTFVMPTTALLQAHYFNIKNVFTTDFPPNPPHIYNFTGAGPKNLNTTSGTKLYKLSFNDTVQLVMQDTGIIAPENHPVHLHGFNFFVVGKGVGNYDSKNDPKKFNLVDPVERNTIGVPAGGWVAIRFRADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPKQSVIAPPKDLPKC*