AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0667370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0667370 MtrunA17_Chr4g0005921 98.025 557 11 0 1 557 1 557 0.0 1127
Msa0667370 MtrunA17_Chr5g0429511 73.201 556 143 4 5 557 6 558 0.0 855
Msa0667370 MtrunA17_Chr3g0104061 74.583 539 134 2 19 557 21 556 0.0 845
Msa0667370 MtrunA17_Chr5g0436461 67.151 551 176 4 8 557 8 554 0.0 793
Msa0667370 MtrunA17_Chr5g0404341 60.323 557 218 2 2 557 12 566 0.0 717
Msa0667370 MtrunA17_Chr5g0404361 60.107 559 216 4 3 557 56 611 0.0 711
Msa0667370 MtrunA17_Chr7g0238981 58.874 586 212 6 1 557 8 593 0.0 697
Msa0667370 MtrunA17_Chr7g0237491 58.025 567 224 4 5 557 14 580 0.0 684
Msa0667370 MtrunA17_Chr7g0237441 57.549 563 225 4 9 557 18 580 0.0 681
Msa0667370 MtrunA17_Chr7g0238351 57.066 559 225 4 14 557 23 581 0.0 669
Msa0667370 MtrunA17_Chr7g0238941 55.732 567 237 6 5 557 12 578 0.0 657
Msa0667370 MtrunA17_Chr4g0031901 55.744 531 225 5 24 545 44 573 0.0 619
Msa0667370 MtrunA17_Chr5g0437681 49.912 565 265 6 7 557 7 567 0.0 590
Msa0667370 MtrunA17_Chr3g0114211 50.353 566 264 8 3 557 11 570 0.0 580
Msa0667370 MtrunA17_Chr5g0431581 50.984 559 259 7 8 557 8 560 0.0 569
Msa0667370 MtrunA17_Chr8g0346581 48.352 546 262 7 24 557 34 571 0.0 539
Msa0667370 MtrunA17_Chr2g0278811 45.804 572 274 5 22 557 36 607 0.0 529
Msa0667370 MtrunA17_Chr4g0008521 47.359 549 274 4 23 557 25 572 3.94e-179 517
Msa0667370 MtrunA17_Chr7g0240971 46.479 568 284 6 8 557 5 570 1.04e-172 500
Msa0667370 MtrunA17_Chr7g0240991 44.386 570 296 10 3 557 8 571 1.11e-171 498
Msa0667370 MtrunA17_Chr5g0436431 59.307 231 90 3 286 515 1 228 5.00e-93 284
Msa0667370 MtrunA17_Chr3g0133861 45.455 330 160 10 226 541 1 324 3.76e-84 265
Msa0667370 MtrunA17_Chr3g0118321 32.327 563 321 17 9 535 7 545 2.58e-73 244
Msa0667370 MtrunA17_Chr3g0118331 30.411 559 338 15 8 535 6 544 5.86e-66 224
Msa0667370 MtrunA17_Chr3g0133871 54.494 178 81 0 25 202 33 210 4.55e-64 209
Msa0667370 MtrunA17_Chr4g0038671 27.928 555 360 13 8 557 13 532 4.19e-56 197
Msa0667370 MtrunA17_Chr3g0143671 28.187 557 357 13 10 557 11 533 2.86e-55 195
Msa0667370 MtrunA17_Chr8g0374271 28.030 528 331 14 19 537 26 513 2.21e-51 184
Msa0667370 MtrunA17_Chr3g0079321 25.853 557 350 15 27 557 32 551 7.01e-51 184
Msa0667370 MtrunA17_Chr1g0157341 27.933 537 349 12 5 537 10 512 1.65e-50 182
Msa0667370 MtrunA17_Chr8g0374261 27.027 518 319 13 20 523 25 497 3.77e-50 181
Msa0667370 MtrunA17_Chr5g0402831 27.473 546 340 17 19 555 26 524 1.81e-49 179
Msa0667370 MtrunA17_Chr4g0024861 27.613 507 319 14 20 517 23 490 5.33e-49 177
Msa0667370 MtrunA17_Chr4g0056511 26.361 588 363 17 1 557 1 549 4.43e-48 176
Msa0667370 MtrunA17_Chr2g0322441 28.797 507 313 14 20 517 26 493 3.40e-47 172
Msa0667370 MtrunA17_Chr4g0075071 29.175 521 319 17 8 517 13 494 9.12e-43 160
Msa0667370 MtrunA17_Chr4g0043261 26.987 541 349 17 7 537 7 511 6.05e-42 158
Msa0667370 MtrunA17_Chr3g0121161 25.185 540 369 16 7 539 47 558 4.57e-41 156
Msa0667370 MtrunA17_Chr3g0121151 25.185 540 369 15 7 539 47 558 1.56e-40 155
Msa0667370 MtrunA17_Chr3g0121171 25.093 538 372 15 7 539 1157 1668 2.44e-40 157
Msa0667370 MtrunA17_Chr3g0121171 25.185 540 369 16 7 539 582 1093 3.62e-40 157
Msa0667370 MtrunA17_Chr3g0121171 25.097 518 359 14 25 539 27 518 6.41e-40 156
Msa0667370 MtrunA17_Chr3g0121171 25.161 465 315 15 80 539 1798 2234 4.08e-33 135
Msa0667370 MtrunA17_Chr7g0234061 25.969 516 333 17 25 522 30 514 1.11e-38 150
Msa0667370 MtrunA17_Chr4g0043251 25.132 569 374 17 7 556 10 545 2.68e-36 142
Msa0667370 MtrunA17_Chr3g0118351 33.436 326 175 11 237 535 6 316 7.90e-35 134
Msa0667370 MtrunA17_Chr8g0382691 41.615 161 90 2 379 535 390 550 2.62e-33 134
Msa0667370 MtrunA17_Chr4g0024641 26.549 452 283 18 76 517 1 413 1.01e-32 134
Msa0667370 MtrunA17_Chr3g0118341 34.118 170 105 5 5 169 4 171 4.93e-26 105
Msa0667370 MtrunA17_Chr5g0436411 63.889 72 26 0 8 79 8 79 3.66e-25 99.0
Msa0667370 MtrunA17_Chr1g0197301 27.077 325 193 10 211 522 1 294 1.34e-22 99.0
Msa0667370 MtrunA17_Chr1g0197311 27.907 172 90 4 27 165 26 196 2.15e-15 76.3
Msa0667370 MtrunA17_Chr4g0075781 31.884 138 85 3 146 283 21 149 3.50e-11 62.0
Msa0667370 MtrunA17_Chr3g0118931 48.333 60 31 0 467 526 10 69 3.68e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0667370 AT2G38080.1 74.368 554 140 2 4 557 7 558 0.0 885
Msa0667370 AT5G01190.1 72.272 559 152 3 1 557 1 558 0.0 816
Msa0667370 AT5G01190.2 70.841 559 146 4 1 557 1 544 0.0 790
Msa0667370 AT5G58910.2 65.832 559 183 4 5 557 11 567 0.0 766
Msa0667370 AT5G58910.3 65.653 559 183 5 5 557 11 566 0.0 761
Msa0667370 AT5G58910.1 66.415 530 163 5 34 557 3 523 0.0 725
Msa0667370 AT5G03260.1 59.459 555 217 4 8 557 6 557 0.0 692
Msa0667370 AT5G60020.1 55.245 572 235 6 7 557 6 577 0.0 656
Msa0667370 AT5G60020.3 56.985 544 215 5 33 557 2 545 0.0 646
Msa0667370 AT2G29130.1 53.054 573 253 7 1 557 1 573 0.0 630
Msa0667370 AT5G05390.1 52.669 562 250 7 7 557 9 565 0.0 604
Msa0667370 AT5G60020.2 54.151 530 222 6 7 515 6 535 0.0 588
Msa0667370 AT2G30210.1 49.129 574 271 7 1 557 1 570 0.0 574
Msa0667370 AT1G18140.1 49.820 556 254 8 24 557 29 581 0.0 572
Msa0667370 AT2G40370.1 49.123 570 257 9 14 557 18 580 0.0 567
Msa0667370 AT5G07130.1 50.174 576 254 10 5 557 4 569 0.0 561
Msa0667370 AT5G09360.1 46.057 558 287 6 7 557 19 569 0.0 531
Msa0667370 AT2G46570.1 45.636 550 281 6 19 557 27 569 0.0 523
Msa0667370 AT5G01050.1 44.425 565 289 8 9 557 13 568 8.84e-170 494
Msa0667370 AT5G07130.2 51.417 494 208 9 86 557 1 484 1.36e-169 489
Msa0667370 AT5G07130.3 51.417 494 208 9 86 557 1 484 1.36e-169 489
Msa0667370 AT5G01040.1 44.207 561 294 8 9 557 13 566 4.00e-169 492
Msa0667370 AT3G09220.1 45.841 541 281 6 10 540 12 550 3.86e-166 484
Msa0667370 AT5G48100.1 45.269 539 279 10 21 547 19 553 1.03e-163 478
Msa0667370 AT2G46570.2 45.287 488 249 6 81 557 4 484 3.41e-157 458
Msa0667370 AT3G09220.2 46.916 454 229 6 97 540 2 453 1.94e-138 410
Msa0667370 AT4G39830.1 33.813 556 332 14 5 535 16 560 5.00e-87 281
Msa0667370 AT5G21105.1 31.874 571 339 13 8 547 22 573 9.60e-76 251
Msa0667370 AT5G21100.1 32.707 532 296 18 39 536 39 542 7.76e-71 238
Msa0667370 AT5G21105.3 31.343 536 321 12 8 515 22 538 1.38e-66 226
Msa0667370 AT4G39830.2 32.773 476 282 13 85 535 3 465 3.03e-62 213
Msa0667370 AT4G39830.3 32.770 473 280 13 88 535 4 463 1.54e-61 211
Msa0667370 AT4G39830.4 31.789 475 275 12 85 535 3 452 7.46e-59 203
Msa0667370 AT1G21850.1 28.872 523 328 14 7 523 12 496 2.44e-52 187
Msa0667370 AT4G25240.2 29.055 561 328 18 26 557 31 550 6.51e-52 187
Msa0667370 AT4G25240.1 29.055 561 328 18 26 557 31 550 6.51e-52 187
Msa0667370 AT4G12420.1 26.151 543 340 13 5 522 6 512 6.84e-52 187
Msa0667370 AT4G12420.2 26.151 543 340 13 5 522 6 512 6.84e-52 187
Msa0667370 AT1G76160.1 27.002 537 349 13 7 537 11 510 7.78e-52 186
Msa0667370 AT1G21860.1 27.885 520 331 13 10 523 15 496 8.59e-52 186
Msa0667370 AT4G22010.1 27.758 562 359 14 5 557 7 530 2.37e-51 184
Msa0667370 AT1G41830.1 27.110 557 363 16 8 557 11 531 5.95e-51 183
Msa0667370 AT1G75790.1 27.061 558 367 15 4 553 5 530 6.02e-51 184
Msa0667370 AT5G66920.1 27.455 550 343 15 20 557 33 538 1.22e-50 182
Msa0667370 AT4G38420.1 27.358 530 329 13 4 517 10 499 3.47e-49 179
Msa0667370 AT5G51480.1 26.560 561 343 17 26 557 30 550 3.48e-49 179
Msa0667370 AT4G37160.1 25.874 572 358 13 9 557 6 534 5.07e-49 178
Msa0667370 AT4G28090.1 27.490 502 319 14 45 537 49 514 8.81e-49 177
Msa0667370 AT5G48450.2 26.571 557 366 16 4 554 9 528 6.25e-48 176
Msa0667370 AT5G48450.1 26.571 557 366 16 4 554 9 528 1.02e-47 176
Msa0667370 AT2G23630.2 27.481 524 333 12 42 557 53 537 3.80e-46 170
Msa0667370 AT2G23630.1 27.672 524 332 12 42 557 48 532 4.00e-46 170
Msa0667370 AT4G38420.3 27.022 507 324 12 4 499 10 481 2.97e-45 167
Msa0667370 AT4G38420.2 26.722 479 306 11 4 471 10 454 2.27e-41 155
Msa0667370 AT5G21105.2 32.081 346 214 6 209 547 51 382 1.14e-38 146
Msa0667370 AT4G37160.2 25.720 486 296 12 9 471 6 449 4.97e-38 145
Msa0667370 AT1G55570.1 26.654 529 347 17 1 517 1 500 1.97e-37 146
Msa0667370 AT3G13390.1 27.888 502 322 18 25 517 29 499 2.98e-37 145
Msa0667370 AT1G55560.1 25.312 561 366 19 6 554 4 523 7.81e-36 141
Msa0667370 AT3G13400.2 24.376 521 357 16 6 517 5 497 1.86e-32 131
Msa0667370 AT3G13400.1 24.376 521 357 16 6 517 5 497 1.86e-32 131

Find 130 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATCACAATTGTTTCAATT+TGG 0.198155 4_4:-7605016 None:intergenic
AAAGCAATTGTCACAGTTAA+TGG 0.198190 4_4:+7602585 Msa0667370:CDS
TAAATGGAGTATGCACATTT+TGG 0.209018 4_4:+7606538 Msa0667370:three_prime_UTR
TCAACAAGGTTAAACTTCTT+TGG 0.219638 4_4:-7605707 None:intergenic
GTTCAAGCATATTTAATAAA+TGG 0.221288 4_4:+7606522 Msa0667370:three_prime_UTR
TTTGGCATGCACATGTTAAT+TGG 0.227901 4_4:+7603991 Msa0667370:CDS
AACATTAACTGGGTATTTCT+TGG 0.229766 4_4:-7605276 None:intergenic
TGTGAGGAATATCAACATTT+TGG 0.230171 4_4:-7606330 None:intergenic
CACAGTTAATGGGAAGTTTC+CGG 0.236215 4_4:+7602596 Msa0667370:CDS
TGTTCCAGGAAGACCATTTA+TGG 0.237415 4_4:-7604446 None:intergenic
AACCATCCTGTTCATCTTCA+TGG 0.254799 4_4:+7605629 Msa0667370:CDS
TCAGATGCTCATACCATAAA+TGG 0.255242 4_4:+7604433 Msa0667370:CDS
AGATTGTGCATATGTATTAT+TGG 0.263411 4_4:+7606584 Msa0667370:three_prime_UTR
ACATACAATTTCACCATTAC+TGG 0.266011 4_4:+7603951 Msa0667370:CDS
GGATAAGGAACACCTTTCTT+TGG 0.297000 4_4:-7604050 None:intergenic
GCCAGATGATGAATTGGTTT+TGG 0.300374 4_4:+7604082 Msa0667370:CDS
TTTCTTTGGTAAAATAACTA+TGG 0.303777 4_4:-7604036 None:intergenic
GTCAAAGAGGAACACTTCTT+TGG 0.310116 4_4:+7603973 Msa0667370:CDS
GAACAATTGGCCACTGTTCC+AGG 0.316593 4_4:-7604460 None:intergenic
CCAATTCATCATCTGGCTTT+GGG 0.320192 4_4:-7604076 None:intergenic
ACCAATTCATCATCTGGCTT+TGG 0.321201 4_4:-7604077 None:intergenic
CCCAAAGCCAGATGATGAAT+TGG 0.321450 4_4:+7604076 Msa0667370:CDS
TTATAAATATGAGGTGGATT+TGG 0.329000 4_4:-7605488 None:intergenic
GCAACAGGTGCATCCATAAA+AGG 0.347626 4_4:-7605110 None:intergenic
GGTTTCAATTTCTTTGTTGT+TGG 0.348108 4_4:+7605650 Msa0667370:CDS
AGTGAGTGAAAATGGTTTCT+TGG 0.351120 4_4:+7601787 Msa0667370:exon
CAGCTTGTTATGCAAGATAC+TGG 0.352988 4_4:+7605590 Msa0667370:CDS
TTGGTTCATGCATTGCCATT+TGG 0.358213 4_4:+7606215 Msa0667370:CDS
AGTGAGTGAGTGAGTGAAAA+TGG 0.365147 4_4:+7601779 Msa0667370:exon
GGTGTTTGGTTTAATACAAA+AGG 0.369465 4_4:+7606634 Msa0667370:three_prime_UTR
TCTTGTATTATATAGGAGTT+TGG 0.374663 4_4:+7606196 Msa0667370:intron
ACTGCTACATTACATTATTC+AGG 0.375617 4_4:+7605152 Msa0667370:CDS
ACAGTTAATGGGAAGTTTCC+GGG 0.376456 4_4:+7602597 Msa0667370:CDS
ATTTATAATTTCACTGGTGC+TGG 0.376600 4_4:+7605503 Msa0667370:CDS
GGAGCTATCACTGATTGTTT+AGG 0.383191 4_4:-7606294 None:intergenic
TTGTTGCATATTTCCAGCTT+TGG 0.394093 4_4:+7601830 Msa0667370:CDS
CATACCATAAATGGTCTTCC+TGG 0.400991 4_4:+7604442 Msa0667370:CDS
TAACTATGTCCTGGTTGAAT+TGG 0.405627 4_4:-7603927 None:intergenic
ATCAATGAAGCTCTAAAATC+AGG 0.405686 4_4:+7604394 Msa0667370:CDS
GGAGGTGTAGTTAGAAATGT+TGG 0.405928 4_4:-7605194 None:intergenic
CCAATAGTGTTCCTTTCAAC+AGG 0.406648 4_4:-7605731 None:intergenic
CTTCTACTACTGTGAGTTTG+TGG 0.408210 4_4:-7604968 None:intergenic
AATACCTTGTGTAGAACAAT+TGG 0.408385 4_4:-7604473 None:intergenic
TTTGTTGTTGGTAAAGGAGT+TGG 0.409860 4_4:+7605662 Msa0667370:CDS
TTGAAACCATGAAGATGAAC+AGG 0.413774 4_4:-7605635 None:intergenic
AATTTCTTTGTTGTTGGTAA+AGG 0.416507 4_4:+7605656 Msa0667370:CDS
CAGCATTGATGATTCTTAGT+AGG 0.420767 4_4:-7604911 None:intergenic
ACCAAAACCAATTCATCATC+TGG 0.422160 4_4:-7604083 None:intergenic
CGGGACCCACTCTTTATGCC+AGG 0.426805 4_4:+7602616 Msa0667370:CDS
GTTAAATTGTCTACAGCAAC+AGG 0.433150 4_4:-7605125 None:intergenic
ATATTGGCAGGCATGGTATT+AGG 0.442333 4_4:+7603856 Msa0667370:intron
AAGCAATTGTCACAGTTAAT+GGG 0.447103 4_4:+7602586 Msa0667370:CDS
TGGTGTACCAGCTGGTGGTT+GGG 0.453591 4_4:+7605751 Msa0667370:CDS
GTGTTTGGTTTAATACAAAA+GGG 0.459483 4_4:+7606635 Msa0667370:three_prime_UTR
CCTCATATTTATAATTTCAC+TGG 0.464423 4_4:+7605497 Msa0667370:CDS
AGTCAAAAGTGTACACTTGT+TGG 0.467075 4_4:-7606609 None:intergenic
ACTTTGCACTCGACCAAAGC+TGG 0.472524 4_4:-7601843 None:intergenic
TAAATATGAGGTGGATTTGG+TGG 0.477812 4_4:-7605485 None:intergenic
TCTGGCTTTGGGAAAGGATA+AGG 0.480287 4_4:-7604065 None:intergenic
GAGGTGTAGTTAGAAATGTT+GGG 0.483750 4_4:-7605193 None:intergenic
TTGAGGACAGGTTGGGCTGA+TGG 0.489336 4_4:+7603882 Msa0667370:CDS
TTGGTGTACCAGCTGGTGGT+TGG 0.489399 4_4:+7605750 Msa0667370:CDS
TAGGCAATTGAGGACAGGTT+GGG 0.490554 4_4:+7603875 Msa0667370:CDS
TTGCTTATGATAGTGACTAA+AGG 0.491826 4_4:-7606762 None:intergenic
TGTTCCTCTTTGACCAGTAA+TGG 0.494174 4_4:-7603964 None:intergenic
AGATGAACAGGATGGTTCTC+AGG 0.496558 4_4:-7605623 None:intergenic
CTTTGGTCGAGTGCAAAGTT+AGG 0.497718 4_4:+7601847 Msa0667370:CDS
CCTTCATGTAAAGCTGCAAA+TGG 0.499621 4_4:+7605356 Msa0667370:CDS
TCATCATCTGGCTTTGGGAA+AGG 0.504275 4_4:-7604071 None:intergenic
ATTGATGATTCTTAGTAGGT+AGG 0.505350 4_4:-7604907 None:intergenic
GTTCATGCATTGCCATTTGG+AGG 0.507146 4_4:+7606218 Msa0667370:CDS
TCATTGGTGAATGCAACTTA+AGG 0.508951 4_4:+7601711 None:intergenic
GTATGAGCATCTGAAACATT+TGG 0.509634 4_4:-7604424 None:intergenic
CCATTTGCAGCTTTACATGA+AGG 0.512374 4_4:-7605356 None:intergenic
TACAATTCACAAAGGGTAGT+AGG 0.513549 4_4:+7606364 Msa0667370:three_prime_UTR
TTGATTAGTTTAGCTAAATG+TGG 0.516859 4_4:+7606678 Msa0667370:three_prime_UTR
ACAATTGTTTCAATTTGGAA+TGG 0.524020 4_4:-7605011 None:intergenic
TACAACATGGGGTCTAAAGA+TGG 0.524585 4_4:+7606245 Msa0667370:CDS
CCTTCCAAATTCACAAAAGT+AGG 0.529000 4_4:+7606387 Msa0667370:three_prime_UTR
ATTTGGAGGTGCATACAACA+TGG 0.531146 4_4:+7606232 Msa0667370:CDS
ATGTTGTATGCACCTCCAAA+TGG 0.535908 4_4:-7606230 None:intergenic
AGTACATTTGTTGTTTGACC+AGG 0.537617 4_4:-7605041 None:intergenic
CCAGTGAAATTATAAATATG+AGG 0.540266 4_4:-7605497 None:intergenic
TTCACCATTACTGGTCAAAG+AGG 0.543070 4_4:+7603960 Msa0667370:CDS
ACCACAATATTACCATCCAT+TGG 0.545580 4_4:+7602679 Msa0667370:CDS
TTCACAAAAGTAGGTGTGGA+GGG 0.546959 4_4:+7606396 Msa0667370:three_prime_UTR
GGCATGGTATTAGGCAATTG+AGG 0.551664 4_4:+7603865 Msa0667370:intron
AACACTATTGGTGTACCAGC+TGG 0.553147 4_4:+7605743 Msa0667370:CDS
GGTATTAGGCAATTGAGGAC+AGG 0.554052 4_4:+7603870 Msa0667370:CDS
CCTGTTGAAAGGAACACTAT+TGG 0.559502 4_4:+7605731 Msa0667370:CDS
TGGAGGGATACAGAGGAGCC+AGG 0.560611 4_4:+7606412 Msa0667370:three_prime_UTR
CAAATTCACAAAAGTAGGTG+TGG 0.563160 4_4:+7606392 Msa0667370:three_prime_UTR
AGATTCAGAGCTGATAATCC+AGG 0.563607 4_4:+7605782 Msa0667370:CDS
ACCTTGTTGATCCTGTTGAA+AGG 0.571542 4_4:+7605720 Msa0667370:CDS
ATCTTCCCTGGCATAAAGAG+TGG 0.572369 4_4:-7602622 None:intergenic
TTAGGCAATTGAGGACAGGT+TGG 0.574915 4_4:+7603874 Msa0667370:CDS
TGGCTAAGATCAACTGTCCA+TGG 0.575480 4_4:+7604011 Msa0667370:CDS
TATCACTGTATCATCTTCCC+TGG 0.579555 4_4:-7602634 None:intergenic
TGAAGCTCTAAAATCAGGAA+TGG 0.584529 4_4:+7604399 Msa0667370:CDS
AAATGGTCTTCCTGGAACAG+TGG 0.590659 4_4:+7604450 Msa0667370:CDS
ATTGCAACCCAACCACCAGC+TGG 0.593002 4_4:-7605758 None:intergenic
AAGAATGTCTAACCAATGGA+TGG 0.595985 4_4:-7602691 None:intergenic
GAAACAATTGTGATAGCACC+TGG 0.597555 4_4:+7605023 Msa0667370:CDS
GGGACCCACTCTTTATGCCA+GGG 0.598369 4_4:+7602617 Msa0667370:CDS
ATGTTCATACAATTCACAAA+GGG 0.599638 4_4:+7606357 Msa0667370:three_prime_UTR
CTGGCATAAAGAGTGGGTCC+CGG 0.600818 4_4:-7602615 None:intergenic
GCTTGTAATAAAGCTGTAGT+TGG 0.603763 4_4:-7605422 None:intergenic
ATTCACAAAAGTAGGTGTGG+AGG 0.612600 4_4:+7606395 Msa0667370:three_prime_UTR
AATGTTCATACAATTCACAA+AGG 0.615103 4_4:+7606356 Msa0667370:three_prime_UTR
GTAGGTGTGGAGGGATACAG+AGG 0.617116 4_4:+7606405 Msa0667370:three_prime_UTR
TTTGGAGGTGCATACAACAT+GGG 0.618425 4_4:+7606233 Msa0667370:CDS
GTGAAATTATAAATATGAGG+TGG 0.624519 4_4:-7605494 None:intergenic
AGGTATTCACAATTATTGAG+AGG 0.624881 4_4:+7606727 Msa0667370:three_prime_UTR
TCCTTTCAACAGGATCAACA+AGG 0.625266 4_4:-7605721 None:intergenic
TTGTATGTATAACTATGTCC+TGG 0.632359 4_4:-7603936 None:intergenic
GCAGCTTTACATGAAGGACA+AGG 0.639189 4_4:-7605350 None:intergenic
ACCAATGGATGGTAATATTG+TGG 0.640439 4_4:-7602680 None:intergenic
TCTTCCCTGGCATAAAGAGT+GGG 0.644065 4_4:-7602621 None:intergenic
GGACACTGTGTGATATATGC+AGG 0.645297 4_4:-7603906 None:intergenic
GTAAAATAACTATGGCACCA+TGG 0.647215 4_4:-7604028 None:intergenic
TACAAACTACCTGTGGAGAG+TGG 0.647512 4_4:+7604879 Msa0667370:CDS
TTGTATGAACATTTGATGTG+AGG 0.653502 4_4:-7606346 None:intergenic
TGAATAATGTAATGTAGCAG+TGG 0.657179 4_4:-7605150 None:intergenic
AGGTGTAGTTAGAAATGTTG+GGG 0.665714 4_4:-7605192 None:intergenic
TTGGAGGTGCATACAACATG+GGG 0.676626 4_4:+7606234 Msa0667370:CDS
AACCATGAAGATGAACAGGA+TGG 0.677352 4_4:-7605631 None:intergenic
ACACAGTGTCCAATTCAACC+AGG 0.693720 4_4:+7603918 Msa0667370:CDS
GTGGCCAATTGTTCTACACA+AGG 0.704099 4_4:+7604469 Msa0667370:CDS
ACTATTGGTGTACCAGCTGG+TGG 0.711640 4_4:+7605746 Msa0667370:CDS
AGATGTTTACAAACTACCTG+TGG 0.715278 4_4:+7604872 Msa0667370:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAATAAAATAAATTT+AGG - chr4_4:7603454-7603473 None:intergenic 0.0%
!!! AAATTTATTTTATTTTATTT+TGG + chr4_4:7603454-7603473 Msa0667370:intron 0.0%
!!! GAATAAGAATTTTTTTTTAA+AGG - chr4_4:7602835-7602854 None:intergenic 10.0%
!!! ATGATGATTAATATTTTTTT+TGG - chr4_4:7603021-7603040 None:intergenic 10.0%
!!! TTAGGAAATTTATTTTTTTA+GGG - chr4_4:7603436-7603455 None:intergenic 10.0%
!!! TTTAGGAAATTTATTTTTTT+AGG - chr4_4:7603437-7603456 None:intergenic 10.0%
!! AAAGATAAATAACATTAATT+TGG - chr4_4:7603651-7603670 None:intergenic 10.0%
!! TAAAAATAAAGTGAATTATT+TGG - chr4_4:7603714-7603733 None:intergenic 10.0%
!! AAAATTAAACTAATTAACAA+AGG - chr4_4:7604134-7604153 None:intergenic 10.0%
!!! ACCTTTTTTAATTTTTTATA+GGG - chr4_4:7604561-7604580 None:intergenic 10.0%
!!! TACCTTTTTTAATTTTTTAT+AGG - chr4_4:7604562-7604581 None:intergenic 10.0%
!! ATAAAAAATTAAAAAAGGTA+TGG + chr4_4:7604562-7604581 Msa0667370:intron 10.0%
!!! TTTTTTTTTTCTTTCTTATT+TGG + chr4_4:7604839-7604858 Msa0667370:intron 10.0%
!! TTTCTTAGATATTACATTTA+TGG + chr4_4:7602106-7602125 Msa0667370:intron 15.0%
!! TTCTTAGATATTACATTTAT+GGG + chr4_4:7602107-7602126 Msa0667370:intron 15.0%
!!! ATATATTTTTTTTTGAAGGA+GGG - chr4_4:7603388-7603407 None:intergenic 15.0%
!!! TTTTTTTTTTTTTTAGGTGT+TGG - chr4_4:7603680-7603699 None:intergenic 15.0%
!!! ATTATCTATTTTTAGAGTAA+AGG - chr4_4:7603758-7603777 None:intergenic 15.0%
!! ATTCTAATAAATGTTTATGA+TGG + chr4_4:7604319-7604338 Msa0667370:intron 15.0%
!! ATACTCTATAAATATTATGA+AGG + chr4_4:7604517-7604536 Msa0667370:intron 15.0%
!! TACTCTATAAATATTATGAA+GGG + chr4_4:7604518-7604537 Msa0667370:intron 15.0%
!!! CCTTTTTTAATTTTTTATAG+GGG - chr4_4:7604560-7604579 None:intergenic 15.0%
!! CTTAATAAACCAAAAAATTT+AGG + chr4_4:7604783-7604802 Msa0667370:intron 15.0%
!!! AATTTTTTAAACTCACTTAA+AGG + chr4_4:7605245-7605264 Msa0667370:CDS 15.0%
!! AAATTGATTAAACAAAACAA+CGG - chr4_4:7605959-7605978 None:intergenic 15.0%
!!! ATTTCTCATTGAAATTTTTA+AGG + chr4_4:7606115-7606134 Msa0667370:intron 15.0%
!! AATTATTAAACCCTATTAAA+AGG - chr4_4:7606167-7606186 None:intergenic 15.0%
!! TACAAATTTCATGTAAGTAA+GGG + chr4_4:7601873-7601892 Msa0667370:intron 20.0%
!!! TAGAGAAAGTTTCTTTTTTT+AGG + chr4_4:7602248-7602267 Msa0667370:intron 20.0%
!!! TGCATAGAATTAACTAATTT+TGG + chr4_4:7602505-7602524 Msa0667370:intron 20.0%
!!! ACATAATCTAGTTGTATTTT+TGG - chr4_4:7602559-7602578 None:intergenic 20.0%
!!! GATATATTTTTTTTTGAAGG+AGG - chr4_4:7603389-7603408 None:intergenic 20.0%
!!! AGGGATATATTTTTTTTTGA+AGG - chr4_4:7603392-7603411 None:intergenic 20.0%
!! AGATAAATAAGTGGAAAATT+TGG + chr4_4:7603514-7603533 Msa0667370:intron 20.0%
!! TTACTCAATTATTACTAGTT+TGG + chr4_4:7603731-7603750 Msa0667370:intron 20.0%
!! TTGAGTCATTATTATCATAT+TGG + chr4_4:7603840-7603859 Msa0667370:intron 20.0%
!! TTTCTTTGGTAAAATAACTA+TGG - chr4_4:7604039-7604058 None:intergenic 20.0%
!!! ATAGTTATTTTACCAAAGAA+AGG + chr4_4:7604038-7604057 Msa0667370:CDS 20.0%
!! ATGTTTCCATTAACATTAAT+TGG + chr4_4:7604295-7604314 Msa0667370:intron 20.0%
!! AGAATTCCAATTAATGTTAA+TGG - chr4_4:7604304-7604323 None:intergenic 20.0%
!! CCCCTATAAAAAATTAAAAA+AGG + chr4_4:7604557-7604576 Msa0667370:intron 20.0%
!!! AGATTTGAACCTAAATTTTT+TGG - chr4_4:7604795-7604814 None:intergenic 20.0%
!!! TTTTTAAAGGAACATTAACT+GGG - chr4_4:7605289-7605308 None:intergenic 20.0%
!!! ATTTTTAAAGGAACATTAAC+TGG - chr4_4:7605290-7605309 None:intergenic 20.0%
!!! AGTGAATGATCAATTTTTAA+AGG - chr4_4:7605302-7605321 None:intergenic 20.0%
!!! TTTTTTTTACTGTTGGATTA+GGG + chr4_4:7605321-7605340 Msa0667370:CDS 20.0%
!!! AGAAAATAAGTATTTTTACC+TGG - chr4_4:7605803-7605822 None:intergenic 20.0%
!! AGATTTAACAAAATTTGAAC+CGG + chr4_4:7605928-7605947 Msa0667370:intron 20.0%
!!! TTGTTTTAAAATTGTAGCAA+AGG - chr4_4:7606067-7606086 None:intergenic 20.0%
!! CTCATTCAAAAAACAATTTA+TGG - chr4_4:7606487-7606506 None:intergenic 20.0%
!! GTTCAAGCATATTTAATAAA+TGG + chr4_4:7606522-7606541 Msa0667370:three_prime_UTR 20.0%
! CTACAAATTTCATGTAAGTA+AGG + chr4_4:7601872-7601891 Msa0667370:intron 25.0%
! ATAAGCTCTCATCATTATTA+CGG + chr4_4:7602377-7602396 Msa0667370:intron 25.0%
!! TTTTCTCATTGTGTTATGTA+TGG - chr4_4:7602443-7602462 None:intergenic 25.0%
! TGCATCTTAGAAGTTAAAAA+AGG - chr4_4:7603185-7603204 None:intergenic 25.0%
!!! GATATATTTTTTTGTTGGTC+AGG - chr4_4:7603366-7603385 None:intergenic 25.0%
!!! GTTTTTTTTTCTGAAGGATA+GGG - chr4_4:7603411-7603430 None:intergenic 25.0%
!!! TGTTTTTTTTTCTGAAGGAT+AGG - chr4_4:7603412-7603431 None:intergenic 25.0%
! CATCTCATAAGATAAATAAG+TGG + chr4_4:7603505-7603524 Msa0667370:intron 25.0%
!!! TGATTAGATCTTTTGCTATA+TGG - chr4_4:7603791-7603810 None:intergenic 25.0%
! ACAATTGTTTCAATTTGGAA+TGG - chr4_4:7605014-7605033 None:intergenic 25.0%
! CTATCACAATTGTTTCAATT+TGG - chr4_4:7605019-7605038 None:intergenic 25.0%
! TTAAAAGCAAACCAAAAATC+TGG + chr4_4:7605065-7605084 Msa0667370:CDS 25.0%
!! CTAAGTATTTTCCAGATTTT+TGG - chr4_4:7605079-7605098 None:intergenic 25.0%
!!! CATTCACTTTTTTTTACTGT+TGG + chr4_4:7605314-7605333 Msa0667370:CDS 25.0%
!!! CTTTTTTTTACTGTTGGATT+AGG + chr4_4:7605320-7605339 Msa0667370:CDS 25.0%
!!! TTTTTTTACTGTTGGATTAG+GGG + chr4_4:7605322-7605341 Msa0667370:CDS 25.0%
!! TTATAAATATGAGGTGGATT+TGG - chr4_4:7605491-7605510 None:intergenic 25.0%
! GTGAAATTATAAATATGAGG+TGG - chr4_4:7605497-7605516 None:intergenic 25.0%
! CCAGTGAAATTATAAATATG+AGG - chr4_4:7605500-7605519 None:intergenic 25.0%
! CCTCATATTTATAATTTCAC+TGG + chr4_4:7605497-7605516 Msa0667370:CDS 25.0%
!!! AATTTCTTTGTTGTTGGTAA+AGG + chr4_4:7605656-7605675 Msa0667370:CDS 25.0%
! GATTTAACAAAATTTGAACC+GGG + chr4_4:7605929-7605948 Msa0667370:intron 25.0%
! AATGTTCATACAATTCACAA+AGG + chr4_4:7606356-7606375 Msa0667370:three_prime_UTR 25.0%
! ATGTTCATACAATTCACAAA+GGG + chr4_4:7606357-7606376 Msa0667370:three_prime_UTR 25.0%
! CAAAAATAAAAGAGAGTGAA+GGG + chr4_4:7606435-7606454 Msa0667370:three_prime_UTR 25.0%
! AGATTGTGCATATGTATTAT+TGG + chr4_4:7606584-7606603 Msa0667370:three_prime_UTR 25.0%
!! GTGTTTGGTTTAATACAAAA+GGG + chr4_4:7606635-7606654 Msa0667370:three_prime_UTR 25.0%
!!! TTGATTAGTTTAGCTAAATG+TGG + chr4_4:7606678-7606697 Msa0667370:three_prime_UTR 25.0%
!!! TCAATTTTTTTCGTTTTGAG+AGG + chr4_4:7606704-7606723 Msa0667370:three_prime_UTR 25.0%
! GAATTTTCTTTTGCAACTTC+AGG - chr4_4:7601738-7601757 None:intergenic 30.0%
!! AAATGTTAACTTGTGCTTTC+AGG + chr4_4:7602130-7602149 Msa0667370:intron 30.0%
!! AATGTTAACTTGTGCTTTCA+GGG + chr4_4:7602131-7602150 Msa0667370:intron 30.0%
TTTCTTAACATGTGCCTTAA+GGG + chr4_4:7602271-7602290 Msa0667370:intron 30.0%
GTATGATTAATATTGAGTGC+AGG + chr4_4:7602527-7602546 Msa0667370:intron 30.0%
AAAGCAATTGTCACAGTTAA+TGG + chr4_4:7602585-7602604 Msa0667370:CDS 30.0%
AAGCAATTGTCACAGTTAAT+GGG + chr4_4:7602586-7602605 Msa0667370:CDS 30.0%
GAATAAGAATGTCTAACCAA+TGG - chr4_4:7602698-7602717 None:intergenic 30.0%
GAATAAGAATGTCTAACCAA+TGG - chr4_4:7602698-7602717 None:intergenic 30.0%
GGATATTGCATATTATATGC+AGG + chr4_4:7602920-7602939 Msa0667370:intron 30.0%
ACAATTTAATTGTGGAGAAG+TGG - chr4_4:7602971-7602990 None:intergenic 30.0%
!! TTTTTGGTCAAGTAGCATAA+TGG - chr4_4:7603005-7603024 None:intergenic 30.0%
!! AGTTTTTGAAAGTCCAAAGT+CGG + chr4_4:7603260-7603279 Msa0667370:intron 30.0%
!!! TTTGTTGGTCAGGTTTTTTA+AGG - chr4_4:7603356-7603375 None:intergenic 30.0%
!!! GGAGGGATATATTTTTTTGT+TGG - chr4_4:7603371-7603390 None:intergenic 30.0%
!!! AGGGATGTTTTTTTTTCTGA+AGG - chr4_4:7603417-7603436 None:intergenic 30.0%
!! ATCTTTTGCTATATGGTCAA+AGG - chr4_4:7603784-7603803 None:intergenic 30.0%
GTCATTATTATCATATTGGC+AGG + chr4_4:7603844-7603863 Msa0667370:intron 30.0%
TTGTATGTATAACTATGTCC+TGG - chr4_4:7603939-7603958 None:intergenic 30.0%
ACATACAATTTCACCATTAC+TGG + chr4_4:7603951-7603970 Msa0667370:CDS 30.0%
!!! GATGAATTGGTTTTGGTATT+AGG + chr4_4:7604089-7604108 Msa0667370:CDS 30.0%
GGTGATGATTGAAAAATTGT+AGG + chr4_4:7604340-7604359 Msa0667370:intron 30.0%
ATTGAAAAATTGTAGGAGAG+TGG + chr4_4:7604347-7604366 Msa0667370:intron 30.0%
!! ATCAATGAAGCTCTAAAATC+AGG + chr4_4:7604394-7604413 Msa0667370:CDS 30.0%
AATACCTTGTGTAGAACAAT+TGG - chr4_4:7604476-7604495 None:intergenic 30.0%
TCATCAGCTTCTTAAAATCA+CGG - chr4_4:7604685-7604704 None:intergenic 30.0%
! ATTGATGATTCTTAGTAGGT+AGG - chr4_4:7604910-7604929 None:intergenic 30.0%
! GAACTTTTCTTCAAAATAGC+TGG + chr4_4:7604945-7604964 Msa0667370:CDS 30.0%
TGAATAATGTAATGTAGCAG+TGG - chr4_4:7605153-7605172 None:intergenic 30.0%
ACTGCTACATTACATTATTC+AGG + chr4_4:7605152-7605171 Msa0667370:CDS 30.0%
!! ATTTGTGTAGCATTTTTAGG+TGG - chr4_4:7605218-7605237 None:intergenic 30.0%
! GCAATTTGTGTAGCATTTTT+AGG - chr4_4:7605221-7605240 None:intergenic 30.0%
AACATTAACTGGGTATTTCT+TGG - chr4_4:7605279-7605298 None:intergenic 30.0%
ATTTATAATTTCACTGGTGC+TGG + chr4_4:7605503-7605522 Msa0667370:CDS 30.0%
!! CTTGTAGTGTTCAAGTTTTT+AGG - chr4_4:7605530-7605549 None:intergenic 30.0%
AAAAACTTGAACACTACAAG+TGG + chr4_4:7605530-7605549 Msa0667370:CDS 30.0%
! GGTTTCAATTTCTTTGTTGT+TGG + chr4_4:7605650-7605669 Msa0667370:CDS 30.0%
TCAACAAGGTTAAACTTCTT+TGG - chr4_4:7605710-7605729 None:intergenic 30.0%
ATAATCGAGATCAAATCAAC+AGG - chr4_4:7605889-7605908 None:intergenic 30.0%
CATTGTTTAATTGGTGCAAT+CGG - chr4_4:7606021-7606040 None:intergenic 30.0%
! CTTGTACTTGCCTTTTAATA+GGG + chr4_4:7606154-7606173 Msa0667370:intron 30.0%
!! CAACATTTTGGAAGATCTTT+TGG - chr4_4:7606321-7606340 None:intergenic 30.0%
! TGTGAGGAATATCAACATTT+TGG - chr4_4:7606333-7606352 None:intergenic 30.0%
TTGTATGAACATTTGATGTG+AGG - chr4_4:7606349-7606368 None:intergenic 30.0%
GCAAAAATAAAAGAGAGTGA+AGG + chr4_4:7606434-7606453 Msa0667370:three_prime_UTR 30.0%
!!! TTGTTTTTTGAATGAGCAGA+AGG + chr4_4:7606491-7606510 Msa0667370:three_prime_UTR 30.0%
!!! TGTTTTTTGAATGAGCAGAA+GGG + chr4_4:7606492-7606511 Msa0667370:three_prime_UTR 30.0%
! TAAATGGAGTATGCACATTT+TGG + chr4_4:7606538-7606557 Msa0667370:three_prime_UTR 30.0%
! GGTGTTTGGTTTAATACAAA+AGG + chr4_4:7606634-7606653 Msa0667370:three_prime_UTR 30.0%
!!! ATTTTTTTCGTTTTGAGAGG+AGG + chr4_4:7606707-7606726 Msa0667370:three_prime_UTR 30.0%
AGGTATTCACAATTATTGAG+AGG + chr4_4:7606727-7606746 Msa0667370:three_prime_UTR 30.0%
AGTGAGTGAAAATGGTTTCT+TGG + chr4_4:7601787-7601806 Msa0667370:exon 35.0%
TTGTTGCATATTTCCAGCTT+TGG + chr4_4:7601830-7601849 Msa0667370:CDS 35.0%
GTTTCTTAACATGTGCCTTA+AGG + chr4_4:7602270-7602289 Msa0667370:intron 35.0%
GAGAGCTTATAAATACATGG+TGG - chr4_4:7602309-7602328 None:intergenic 35.0%
GGTGAGAGCTTATAAATACA+TGG - chr4_4:7602312-7602331 None:intergenic 35.0%
ATATTGTGCACACGTGATAA+TGG - chr4_4:7602333-7602352 None:intergenic 35.0%
TGATTAATATTGAGTGCAGG+TGG + chr4_4:7602530-7602549 Msa0667370:intron 35.0%
ACCACAATATTACCATCCAT+TGG + chr4_4:7602679-7602698 Msa0667370:CDS 35.0%
ACCAATGGATGGTAATATTG+TGG - chr4_4:7602683-7602702 None:intergenic 35.0%
AAGAATGTCTAACCAATGGA+TGG - chr4_4:7602694-7602713 None:intergenic 35.0%
ACCACAATATTACCATCCAT+TGG + chr4_4:7602679-7602698 Msa0667370:CDS 35.0%
ACCAATGGATGGTAATATTG+TGG - chr4_4:7602683-7602702 None:intergenic 35.0%
AAGAATGTCTAACCAATGGA+TGG - chr4_4:7602694-7602713 None:intergenic 35.0%
GAGCTCACACAATTTAATTG+TGG - chr4_4:7602979-7602998 None:intergenic 35.0%
GTAGAAACATTGCAATGTGA+GGG - chr4_4:7603555-7603574 None:intergenic 35.0%
! TAGTGAGTCTTTTGCTTAGT+TGG - chr4_4:7603577-7603596 None:intergenic 35.0%
TATTATCATATTGGCAGGCA+TGG + chr4_4:7603849-7603868 Msa0667370:intron 35.0%
TAACTATGTCCTGGTTGAAT+TGG - chr4_4:7603930-7603949 None:intergenic 35.0%
TTTGGCATGCACATGTTAAT+TGG + chr4_4:7603991-7604010 Msa0667370:CDS 35.0%
GTAAAATAACTATGGCACCA+TGG - chr4_4:7604031-7604050 None:intergenic 35.0%
ACCAAAACCAATTCATCATC+TGG - chr4_4:7604086-7604105 None:intergenic 35.0%
!! TGAAGCTCTAAAATCAGGAA+TGG + chr4_4:7604399-7604418 Msa0667370:CDS 35.0%
! GTATGAGCATCTGAAACATT+TGG - chr4_4:7604427-7604446 None:intergenic 35.0%
TCAGATGCTCATACCATAAA+TGG + chr4_4:7604433-7604452 Msa0667370:CDS 35.0%
!!! TTTTAGTCTTAGTGCCTGTT+TGG + chr4_4:7604606-7604625 Msa0667370:intron 35.0%
TTATTAAGTGCCTGTTTGGA+TGG - chr4_4:7604771-7604790 None:intergenic 35.0%
TGGTTTATTAAGTGCCTGTT+TGG - chr4_4:7604775-7604794 None:intergenic 35.0%
AGATGTTTACAAACTACCTG+TGG + chr4_4:7604872-7604891 Msa0667370:intron 35.0%
!! CAGCATTGATGATTCTTAGT+AGG - chr4_4:7604914-7604933 None:intergenic 35.0%
!! AGTACATTTGTTGTTTGACC+AGG - chr4_4:7605044-7605063 None:intergenic 35.0%
GTTAAATTGTCTACAGCAAC+AGG - chr4_4:7605128-7605147 None:intergenic 35.0%
AGGTGTAGTTAGAAATGTTG+GGG - chr4_4:7605195-7605214 None:intergenic 35.0%
GAGGTGTAGTTAGAAATGTT+GGG - chr4_4:7605196-7605215 None:intergenic 35.0%
GCTTGTAATAAAGCTGTAGT+TGG - chr4_4:7605425-7605444 None:intergenic 35.0%
! TAAATATGAGGTGGATTTGG+TGG - chr4_4:7605488-7605507 None:intergenic 35.0%
TTGAAACCATGAAGATGAAC+AGG - chr4_4:7605638-7605657 None:intergenic 35.0%
!! TTTGTTGTTGGTAAAGGAGT+TGG + chr4_4:7605662-7605681 Msa0667370:CDS 35.0%
AAAATGCCGATCAATTCAAC+AGG + chr4_4:7605844-7605863 Msa0667370:intron 35.0%
CCTCAGGATCATTGTTTAAT+TGG - chr4_4:7606030-7606049 None:intergenic 35.0%
CCAATTAAACAATGATCCTG+AGG + chr4_4:7606027-7606046 Msa0667370:intron 35.0%
CCTATTAAAAGGCAAGTACA+AGG - chr4_4:7606156-7606175 None:intergenic 35.0%
! CCTTGTACTTGCCTTTTAAT+AGG + chr4_4:7606153-7606172 Msa0667370:intron 35.0%
!! TCTAAAGATGGCATTTTTGG+TGG + chr4_4:7606257-7606276 Msa0667370:CDS 35.0%
!! CATTTTGGAAGATCTTTTGG+TGG - chr4_4:7606318-7606337 None:intergenic 35.0%
TACAATTCACAAAGGGTAGT+AGG + chr4_4:7606364-7606383 Msa0667370:three_prime_UTR 35.0%
!! CCTACTTTTGTGAATTTGGA+AGG - chr4_4:7606390-7606409 None:intergenic 35.0%
CCTTCCAAATTCACAAAAGT+AGG + chr4_4:7606387-7606406 Msa0667370:three_prime_UTR 35.0%
!! CACACCTACTTTTGTGAATT+TGG - chr4_4:7606394-7606413 None:intergenic 35.0%
CAAATTCACAAAAGTAGGTG+TGG + chr4_4:7606392-7606411 Msa0667370:three_prime_UTR 35.0%
!!! CACTCTCTTTTATTTTTGCC+TGG - chr4_4:7606433-7606452 None:intergenic 35.0%
AAAGAGAGTGAAGGGAAAAA+AGG + chr4_4:7606443-7606462 Msa0667370:three_prime_UTR 35.0%
! AGTCAAAAGTGTACACTTGT+TGG - chr4_4:7606612-7606631 None:intergenic 35.0%
!!! CAAGTGTACACTTTTGACTT+TGG + chr4_4:7606613-7606632 Msa0667370:three_prime_UTR 35.0%
!!! ACACTTTTGACTTTGGTGTT+TGG + chr4_4:7606620-7606639 Msa0667370:three_prime_UTR 35.0%
AGTGAGTGAGTGAGTGAAAA+TGG + chr4_4:7601779-7601798 Msa0667370:exon 40.0%
TTAATATTGAGTGCAGGTGG+TGG + chr4_4:7602533-7602552 Msa0667370:intron 40.0%
CACAGTTAATGGGAAGTTTC+CGG + chr4_4:7602596-7602615 Msa0667370:CDS 40.0%
ACAGTTAATGGGAAGTTTCC+GGG + chr4_4:7602597-7602616 Msa0667370:CDS 40.0%
TATCACTGTATCATCTTCCC+TGG - chr4_4:7602637-7602656 None:intergenic 40.0%
CATATTATATGCAGGAGCCA+GGG + chr4_4:7602928-7602947 Msa0667370:intron 40.0%
!! AATTAGTGAAGCACCGACTT+TGG - chr4_4:7603276-7603295 None:intergenic 40.0%
!! AGTCGGTGCTTCACTAATTT+TGG + chr4_4:7603277-7603296 Msa0667370:intron 40.0%
GGTAGAAACATTGCAATGTG+AGG - chr4_4:7603556-7603575 None:intergenic 40.0%
ATATTGGCAGGCATGGTATT+AGG + chr4_4:7603856-7603875 Msa0667370:intron 40.0%
TTCACCATTACTGGTCAAAG+AGG + chr4_4:7603960-7603979 Msa0667370:CDS 40.0%
TGTTCCTCTTTGACCAGTAA+TGG - chr4_4:7603967-7603986 None:intergenic 40.0%
GTCAAAGAGGAACACTTCTT+TGG + chr4_4:7603973-7603992 Msa0667370:CDS 40.0%
GGATAAGGAACACCTTTCTT+TGG - chr4_4:7604053-7604072 None:intergenic 40.0%
!! CCAATTCATCATCTGGCTTT+GGG - chr4_4:7604079-7604098 None:intergenic 40.0%
! ACCAATTCATCATCTGGCTT+TGG - chr4_4:7604080-7604099 None:intergenic 40.0%
!! GCCAGATGATGAATTGGTTT+TGG + chr4_4:7604082-7604101 Msa0667370:CDS 40.0%
GAAAAATTGTAGGAGAGTGG+TGG + chr4_4:7604350-7604369 Msa0667370:intron 40.0%
CATACCATAAATGGTCTTCC+TGG + chr4_4:7604442-7604461 Msa0667370:CDS 40.0%
TGTTCCAGGAAGACCATTTA+TGG - chr4_4:7604449-7604468 None:intergenic 40.0%
TTGAAGCTTCTGCGTTAAAG+TGG + chr4_4:7604705-7604724 Msa0667370:intron 40.0%
CTTCTACTACTGTGAGTTTG+TGG - chr4_4:7604971-7604990 None:intergenic 40.0%
GAAACAATTGTGATAGCACC+TGG + chr4_4:7605023-7605042 Msa0667370:CDS 40.0%
! AGTAGCAGCTTCACCTTTTA+TGG + chr4_4:7605097-7605116 Msa0667370:CDS 40.0%
! GGAGGTGTAGTTAGAAATGT+TGG - chr4_4:7605197-7605216 None:intergenic 40.0%
!!! TGTGTAGCATTTTTAGGTGG+AGG - chr4_4:7605215-7605234 None:intergenic 40.0%
CCATTTGCAGCTTTACATGA+AGG - chr4_4:7605359-7605378 None:intergenic 40.0%
CCTTCATGTAAAGCTGCAAA+TGG + chr4_4:7605356-7605375 Msa0667370:CDS 40.0%
!! CAGCTTGTTATGCAAGATAC+TGG + chr4_4:7605590-7605609 Msa0667370:CDS 40.0%
AACCATCCTGTTCATCTTCA+TGG + chr4_4:7605629-7605648 Msa0667370:CDS 40.0%
AACCATGAAGATGAACAGGA+TGG - chr4_4:7605634-7605653 None:intergenic 40.0%
ACCTTGTTGATCCTGTTGAA+AGG + chr4_4:7605720-7605739 Msa0667370:CDS 40.0%
TCCTTTCAACAGGATCAACA+AGG - chr4_4:7605724-7605743 None:intergenic 40.0%
CCAATAGTGTTCCTTTCAAC+AGG - chr4_4:7605734-7605753 None:intergenic 40.0%
CCTGTTGAAAGGAACACTAT+TGG + chr4_4:7605731-7605750 Msa0667370:CDS 40.0%
AGATTCAGAGCTGATAATCC+AGG + chr4_4:7605782-7605801 Msa0667370:CDS 40.0%
GTTCGACCTGTTGAATTGAT+CGG - chr4_4:7605853-7605872 None:intergenic 40.0%
GATCAAATCAACAGGCCAAA+TGG - chr4_4:7605881-7605900 None:intergenic 40.0%
AAACAAAACAACGGTTCACC+CGG - chr4_4:7605950-7605969 None:intergenic 40.0%
! CAATGATCCTGAGGTTTTAC+TGG + chr4_4:7606036-7606055 Msa0667370:intron 40.0%
TTGGTTCATGCATTGCCATT+TGG + chr4_4:7606215-7606234 Msa0667370:CDS 40.0%
ATGTTGTATGCACCTCCAAA+TGG - chr4_4:7606233-7606252 None:intergenic 40.0%
! ATTTGGAGGTGCATACAACA+TGG + chr4_4:7606232-7606251 Msa0667370:CDS 40.0%
! TTTGGAGGTGCATACAACAT+GGG + chr4_4:7606233-7606252 Msa0667370:CDS 40.0%
TACAACATGGGGTCTAAAGA+TGG + chr4_4:7606245-7606264 Msa0667370:CDS 40.0%
! GGGTCTAAAGATGGCATTTT+TGG + chr4_4:7606254-7606273 Msa0667370:CDS 40.0%
!!! ATGGCATTTTTGGTGGACAA+TGG + chr4_4:7606264-7606283 Msa0667370:CDS 40.0%
!! TTTTTGGTGGACAATGGCAA+AGG + chr4_4:7606270-7606289 Msa0667370:CDS 40.0%
! GGAGCTATCACTGATTGTTT+AGG - chr4_4:7606297-7606316 None:intergenic 40.0%
ATTCACAAAAGTAGGTGTGG+AGG + chr4_4:7606395-7606414 Msa0667370:three_prime_UTR 40.0%
TTCACAAAAGTAGGTGTGGA+GGG + chr4_4:7606396-7606415 Msa0667370:three_prime_UTR 40.0%
CTTTGGTCGAGTGCAAAGTT+AGG + chr4_4:7601847-7601866 Msa0667370:CDS 45.0%
!! GGTGTTAACTTGTGCCCTTA+AGG - chr4_4:7602288-7602307 None:intergenic 45.0%
TCTTCCCTGGCATAAAGAGT+GGG - chr4_4:7602624-7602643 None:intergenic 45.0%
ATCTTCCCTGGCATAAAGAG+TGG - chr4_4:7602625-7602644 None:intergenic 45.0%
CCAACTGAGCTAAGCTCATA+GGG - chr4_4:7602897-7602916 None:intergenic 45.0%
ACCAACTGAGCTAAGCTCAT+AGG - chr4_4:7602898-7602917 None:intergenic 45.0%
ATGAGCTTAGCTCAGTTGGT+AGG + chr4_4:7602898-7602917 Msa0667370:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+GGG + chr4_4:7602899-7602918 Msa0667370:intron 45.0%
GCATATTATATGCAGGAGCC+AGG + chr4_4:7602927-7602946 Msa0667370:intron 45.0%
! TGTGGAGAAGTGGAGTGTTT+GGG - chr4_4:7602961-7602980 None:intergenic 45.0%
! TTGTGGAGAAGTGGAGTGTT+TGG - chr4_4:7602962-7602981 None:intergenic 45.0%
GGCATGGTATTAGGCAATTG+AGG + chr4_4:7603865-7603884 Msa0667370:intron 45.0%
GGTATTAGGCAATTGAGGAC+AGG + chr4_4:7603870-7603889 Msa0667370:CDS 45.0%
TTAGGCAATTGAGGACAGGT+TGG + chr4_4:7603874-7603893 Msa0667370:CDS 45.0%
TAGGCAATTGAGGACAGGTT+GGG + chr4_4:7603875-7603894 Msa0667370:CDS 45.0%
GGACACTGTGTGATATATGC+AGG - chr4_4:7603909-7603928 None:intergenic 45.0%
ACACAGTGTCCAATTCAACC+AGG + chr4_4:7603918-7603937 Msa0667370:CDS 45.0%
TGGCTAAGATCAACTGTCCA+TGG + chr4_4:7604011-7604030 Msa0667370:CDS 45.0%
!! TCTGGCTTTGGGAAAGGATA+AGG - chr4_4:7604068-7604087 None:intergenic 45.0%
!! TCATCATCTGGCTTTGGGAA+AGG - chr4_4:7604074-7604093 None:intergenic 45.0%
CCCAAAGCCAGATGATGAAT+TGG + chr4_4:7604076-7604095 Msa0667370:CDS 45.0%
AAATGGTCTTCCTGGAACAG+TGG + chr4_4:7604450-7604469 Msa0667370:CDS 45.0%
GTGGCCAATTGTTCTACACA+AGG + chr4_4:7604469-7604488 Msa0667370:CDS 45.0%
TATCAAACGCCACTCCAAAC+AGG - chr4_4:7604623-7604642 None:intergenic 45.0%
TTGCAATCGTCCATCCAAAC+AGG + chr4_4:7604758-7604777 Msa0667370:intron 45.0%
TACAAACTACCTGTGGAGAG+TGG + chr4_4:7604879-7604898 Msa0667370:CDS 45.0%
GCAACAGGTGCATCCATAAA+AGG - chr4_4:7605113-7605132 None:intergenic 45.0%
GCAGCTTTACATGAAGGACA+AGG - chr4_4:7605353-7605372 None:intergenic 45.0%
AGATGAACAGGATGGTTCTC+AGG - chr4_4:7605626-7605645 None:intergenic 45.0%
AACACTATTGGTGTACCAGC+TGG + chr4_4:7605743-7605762 Msa0667370:CDS 45.0%
ATCAACAGGCCAAATGGCTA+TGG - chr4_4:7605875-7605894 None:intergenic 45.0%
! GTTCATGCATTGCCATTTGG+AGG + chr4_4:7606218-7606237 Msa0667370:CDS 45.0%
! TTGGAGGTGCATACAACATG+GGG + chr4_4:7606234-7606253 Msa0667370:CDS 45.0%
!!! ATAAGAATTTTTTTTTTTAA+AGG - chr4_4:7602725-7602744 None:intergenic 5.0%
!! AAATATTATTAACAATAAAA+TGG - chr4_4:7603120-7603139 None:intergenic 5.0%
!!! AAAAGTTTTTTTTTTTTTTT+AGG - chr4_4:7603686-7603705 None:intergenic 5.0%
ACTTTGCACTCGACCAAAGC+TGG - chr4_4:7601846-7601865 None:intergenic 50.0%
CCCTATGAGCTTAGCTCAGT+TGG + chr4_4:7602894-7602913 Msa0667370:intron 50.0%
! GTGGAGAAGTGGAGTGTTTG+GGG - chr4_4:7602960-7602979 None:intergenic 50.0%
GAACAATTGGCCACTGTTCC+AGG - chr4_4:7604463-7604482 None:intergenic 50.0%
GTCTTAGTGCCTGTTTGGAG+TGG + chr4_4:7604611-7604630 Msa0667370:intron 50.0%
! TAGGTTTTGCCACTCTCCAC+AGG - chr4_4:7604891-7604910 None:intergenic 50.0%
ACTATTGGTGTACCAGCTGG+TGG + chr4_4:7605746-7605765 Msa0667370:CDS 50.0%
CAGGTCGAACCATAGCCATT+TGG + chr4_4:7605863-7605882 Msa0667370:intron 50.0%
GGCTGAACCAGTAAAACCTC+AGG - chr4_4:7606046-7606065 None:intergenic 50.0%
CTGGCATAAAGAGTGGGTCC+CGG - chr4_4:7602618-7602637 None:intergenic 55.0%
GGGACCCACTCTTTATGCCA+GGG + chr4_4:7602617-7602636 Msa0667370:CDS 55.0%
! AGTGTTTGGGGTTCGAACCC+TGG - chr4_4:7602948-7602967 None:intergenic 55.0%
! TTGAGGACAGGTTGGGCTGA+TGG + chr4_4:7603882-7603901 Msa0667370:CDS 55.0%
TTGGTGTACCAGCTGGTGGT+TGG + chr4_4:7605750-7605769 Msa0667370:CDS 55.0%
TGGTGTACCAGCTGGTGGTT+GGG + chr4_4:7605751-7605770 Msa0667370:CDS 55.0%
ATTGCAACCCAACCACCAGC+TGG - chr4_4:7605761-7605780 None:intergenic 55.0%
GTAGGTGTGGAGGGATACAG+AGG + chr4_4:7606405-7606424 Msa0667370:three_prime_UTR 55.0%
CGGGACCCACTCTTTATGCC+AGG + chr4_4:7602616-7602635 Msa0667370:CDS 60.0%
TGGAGGGATACAGAGGAGCC+AGG + chr4_4:7606412-7606431 Msa0667370:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 7601712 7606771 7601712 ID=Msa0667370;Name=Msa0667370
chr4_4 mRNA 7601712 7606771 7601712 ID=Msa0667370-mRNA-1;Parent=Msa0667370;Name=Msa0667370-mRNA-1;_AED=0.03;_eAED=0.03;_QI=86|1|1|1|1|1|6|430|557
chr4_4 exon 7601712 7601884 7601712 ID=Msa0667370-mRNA-1:exon:2513;Parent=Msa0667370-mRNA-1
chr4_4 exon 7602549 7602700 7602549 ID=Msa0667370-mRNA-1:exon:2514;Parent=Msa0667370-mRNA-1
chr4_4 exon 7603866 7604110 7603866 ID=Msa0667370-mRNA-1:exon:2515;Parent=Msa0667370-mRNA-1
chr4_4 exon 7604362 7604490 7604362 ID=Msa0667370-mRNA-1:exon:2516;Parent=Msa0667370-mRNA-1
chr4_4 exon 7604874 7605803 7604874 ID=Msa0667370-mRNA-1:exon:2517;Parent=Msa0667370-mRNA-1
chr4_4 exon 7606211 7606771 7606211 ID=Msa0667370-mRNA-1:exon:2518;Parent=Msa0667370-mRNA-1
chr4_4 five_prime_UTR 7601712 7601797 7601712 ID=Msa0667370-mRNA-1:five_prime_utr;Parent=Msa0667370-mRNA-1
chr4_4 CDS 7601798 7601884 7601798 ID=Msa0667370-mRNA-1:cds;Parent=Msa0667370-mRNA-1
chr4_4 CDS 7602549 7602700 7602549 ID=Msa0667370-mRNA-1:cds;Parent=Msa0667370-mRNA-1
chr4_4 CDS 7603866 7604110 7603866 ID=Msa0667370-mRNA-1:cds;Parent=Msa0667370-mRNA-1
chr4_4 CDS 7604362 7604490 7604362 ID=Msa0667370-mRNA-1:cds;Parent=Msa0667370-mRNA-1
chr4_4 CDS 7604874 7605803 7604874 ID=Msa0667370-mRNA-1:cds;Parent=Msa0667370-mRNA-1
chr4_4 CDS 7606211 7606341 7606211 ID=Msa0667370-mRNA-1:cds;Parent=Msa0667370-mRNA-1
chr4_4 three_prime_UTR 7606342 7606771 7606342 ID=Msa0667370-mRNA-1:three_prime_utr;Parent=Msa0667370-mRNA-1
Gene Sequence

>Msa0667370

ATGGTTTCTTGGATTCGAGTACTACTTCTTATTTGTTGCATATTTCCAGCTTTGGTCGAGTGCAAAGTTAGGCACTACAAATTTCATGTGGTGGCCAAAAATACAACTAGATTATGTTCAAGCAAAGCAATTGTCACAGTTAATGGGAAGTTTCCGGGACCCACTCTTTATGCCAGGGAAGATGATACAGTGATAGTCAAAGTTCGTAACAAAGTCAACCACAATATTACCATCCATTGGCATGGTATTAGGCAATTGAGGACAGGTTGGGCTGATGGACCTGCATATATCACACAGTGTCCAATTCAACCAGGACATAGTTATACATACAATTTCACCATTACTGGTCAAAGAGGAACACTTCTTTGGCATGCACATGTTAATTGGCTAAGATCAACTGTCCATGGTGCCATAGTTATTTTACCAAAGAAAGGTGTTCCTTATCCTTTCCCAAAGCCAGATGATGAATTGGTTTTGGTATTAGGAGAGTGGTGGAAATCTGATACTGAAGCTGTTATCAATGAAGCTCTAAAATCAGGAATGGCACCAAATGTTTCAGATGCTCATACCATAAATGGTCTTCCTGGAACAGTGGCCAATTGTTCTACACAAGATGTTTACAAACTACCTGTGGAGAGTGGCAAAACCTACCTACTAAGAATCATCAATGCTGCACTCAATGAAGAACTTTTCTTCAAAATAGCTGGCCACAAACTCACAGTAGTAGAAGTTGATGCAACATACACAAAACCATTCCAAATTGAAACAATTGTGATAGCACCTGGTCAAACAACAAATGTACTATTAAAAGCAAACCAAAAATCTGGAAAATACTTAGTAGCAGCTTCACCTTTTATGGATGCACCTGTTGCTGTAGACAATTTAACAGCCACTGCTACATTACATTATTCAGGAACTACTCTTACAAACACCCCAACATTTCTAACTACACCTCCACCTAAAAATGCTACACAAATTGCTAATAATTTTTTAAACTCACTTAAAGGACTTAATTCCAAGAAATACCCAGTTAATGTTCCTTTAAAAATTGATCATTCACTTTTTTTTACTGTTGGATTAGGGGTTAATCCTTGTCCTTCATGTAAAGCTGCAAATGGTAGTAGAGTTGTAGCTGCTATTAATAATGTTACATTTGTTATGCCAACTACAGCTTTATTACAAGCACATTATTTCAACATTAAAAATGTTTTTACTACAGATTTTCCACCAAATCCACCTCATATTTATAATTTCACTGGTGCTGGACCTAAAAACTTGAACACTACAAGTGGTACAAAGTTATATAAGTTATCATTTAATGATACTGTTCAGCTTGTTATGCAAGATACTGGAATCATTGCACCTGAGAACCATCCTGTTCATCTTCATGGTTTCAATTTCTTTGTTGTTGGTAAAGGAGTTGGAAATTATGATAGTAAAAATGATCCAAAGAAGTTTAACCTTGTTGATCCTGTTGAAAGGAACACTATTGGTGTACCAGCTGGTGGTTGGGTTGCAATTAGATTCAGAGCTGATAATCCAGGAGTTTGGTTCATGCATTGCCATTTGGAGGTGCATACAACATGGGGTCTAAAGATGGCATTTTTGGTGGACAATGGCAAAGGTCCTAAACAATCAGTGATAGCTCCACCAAAAGATCTTCCAAAATGTTGA
Protein sequence

>Msa0667370

MVSWIRVLLLICCIFPALVECKVRHYKFHVVAKNTTRLCSSKAIVTVNGKFPGPTLYAREDDTVIVKVRNKVNHNITIHWHGIRQLRTGWADGPAYITQCPIQPGHSYTYNFTITGQRGTLLWHAHVNWLRSTVHGAIVILPKKGVPYPFPKPDDELVLVLGEWWKSDTEAVINEALKSGMAPNVSDAHTINGLPGTVANCSTQDVYKLPVESGKTYLLRIINAALNEELFFKIAGHKLTVVEVDATYTKPFQIETIVIAPGQTTNVLLKANQKSGKYLVAASPFMDAPVAVDNLTATATLHYSGTTLTNTPTFLTTPPPKNATQIANNFLNSLKGLNSKKYPVNVPLKIDHSLFFTVGLGVNPCPSCKAANGSRVVAAINNVTFVMPTTALLQAHYFNIKNVFTTDFPPNPPHIYNFTGAGPKNLNTTSGTKLYKLSFNDTVQLVMQDTGIIAPENHPVHLHGFNFFVVGKGVGNYDSKNDPKKFNLVDPVERNTIGVPAGGWVAIRFRADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPKQSVIAPPKDLPKC*