AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0108160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0108160 MtrunA17_Chr1g0164821 82.474 194 18 2 1 194 2 179 3.40e-110 312
Msa0108160 MtrunA17_Chr1g0164801 87.432 183 21 1 12 194 63 243 2.57e-109 312
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0108160 AT2G41610.1 52.288 153 71 2 21 171 144 296 2.40e-46 155

Find 43 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTAGTGTTCTTTGTTTA+AGG 0.102484 1_3:-19456393 Msa0108160:CDS
TTTGCATGCAAGTTTATATT+TGG 0.149495 1_3:-19456569 Msa0108160:CDS
TTGATGTCTTCGACACTTTC+AGG 0.157889 1_3:-19456508 Msa0108160:CDS
TTTGCAGCATCAACAGTTTC+TGG 0.205539 1_3:-19456595 Msa0108160:intron
CGACTTTAAAACAGCATCTT+AGG 0.221903 1_3:+19455872 None:intergenic
AATTGTGGTATGCAATATAA+AGG 0.236352 1_3:-19456059 Msa0108160:three_prime_UTR
ACTCTCAACATTACTCTTTC+CGG 0.250688 1_3:+19456247 None:intergenic
AGGATTATATGTAAAATCTT+TGG 0.251675 1_3:-19456373 Msa0108160:CDS
CCCATCCAGGTTGGAATGTT+GGG 0.289826 1_3:+19457040 None:intergenic
ATGTGGCATGAATTTCTTCT+AGG 0.316936 1_3:+19457016 None:intergenic
TAATGATGAATAGCCTTATC+TGG 0.349011 1_3:-19457074 None:intergenic
ATGTTGAGAGTTGTTGCTTT+TGG 0.365055 1_3:-19456235 Msa0108160:CDS
GTCCATGATTAAAGTGTTGA+TGG 0.365851 1_3:-19456329 Msa0108160:CDS
ATTGTGGTATGCAATATAAA+GGG 0.378206 1_3:-19456058 Msa0108160:three_prime_UTR
TTCCATCAACACTTTAATCA+TGG 0.378693 1_3:+19456327 None:intergenic
AGGAAAGAAGCTTTGGTTGT+TGG 0.396242 1_3:-19456463 Msa0108160:CDS
TGTTGATGGAAAGGTTTAGT+TGG 0.408545 1_3:-19456315 Msa0108160:CDS
TCCCATCCAGGTTGGAATGT+TGG 0.427040 1_3:+19457039 None:intergenic
AGACATCAACGCGTCGAAAC+CGG 0.430436 1_3:+19456522 None:intergenic
TAAAATCTTTGGAGAAAATG+TGG 0.464872 1_3:-19456362 Msa0108160:CDS
AAAACGATGGTTTAAAATTG+TGG 0.467219 1_3:-19456074 Msa0108160:three_prime_UTR
AAAGAAGCTTTGGTTGTTGG+AGG 0.477083 1_3:-19456460 Msa0108160:CDS
AAAATCTTTGGAGAAAATGT+GGG 0.500746 1_3:-19456361 Msa0108160:CDS
AATTTGTGCAATGGCTTATG+TGG 0.510079 1_3:-19456161 Msa0108160:CDS
CTTCTAGGTCCCATCCAGGT+TGG 0.514155 1_3:+19457031 None:intergenic
CCCAACATTCCAACCTGGAT+GGG 0.516887 1_3:-19457040 Msa0108160:CDS
ACCCAACATTCCAACCTGGA+TGG 0.518422 1_3:-19457041 Msa0108160:CDS
TGATTAAAGTGTTGATGGAA+AGG 0.521545 1_3:-19456324 Msa0108160:CDS
GCGTCGAAACCGGTATAATA+CGG 0.533596 1_3:+19456532 None:intergenic
ATTGTGTTACCGTATTATAC+CGG 0.533901 1_3:-19456541 Msa0108160:CDS
AAGAAGCTTTGGTTGTTGGA+GGG 0.534987 1_3:-19456459 Msa0108160:CDS
TTTGCTTCATGTTCTCAAAG+AGG 0.537931 1_3:-19456194 Msa0108160:CDS
ATTTCTTCTAGGTCCCATCC+AGG 0.541890 1_3:+19457027 None:intergenic
AACTAGTGAAGTACAAAGGT+TGG 0.543343 1_3:-19456435 Msa0108160:CDS
TGTGTGTAGGAAAGAAGCTT+TGG 0.547839 1_3:-19456470 Msa0108160:CDS
TTTGATTGCAAAGTCACCAC+CGG 0.550429 1_3:-19456266 Msa0108160:CDS
ATGTAGTCAAATTTGTGCAA+TGG 0.580987 1_3:-19456170 Msa0108160:CDS
ACGAAGGTTACTTTGAGAAG+CGG 0.602692 1_3:+19455975 None:intergenic
CTCAACATTACTCTTTCCGG+TGG 0.610843 1_3:+19456250 None:intergenic
AAATCTTTGGAGAAAATGTG+GGG 0.645805 1_3:-19456360 Msa0108160:CDS
AGTATGTAATATCAAAACGA+TGG 0.650160 1_3:-19456087 Msa0108160:three_prime_UTR
AATGTGCAACATGTGTGTGT+AGG 0.666637 1_3:-19456483 Msa0108160:CDS
GGGAAACTAGTGAAGTACAA+AGG 0.675405 1_3:-19456439 Msa0108160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATAATAATATTTGCAA+AGG - chr1_3:19456131-19456150 Msa0108160:CDS 10.0%
!! ATAATAATAATATTTGCAAA+GGG - chr1_3:19456132-19456151 Msa0108160:CDS 10.0%
!! TATAATAATAATATTTGCAA+AGG - chr1_3:19456131-19456150 Msa0108160:CDS 10.0%
!! ATAATAATAATATTTGCAAA+GGG - chr1_3:19456132-19456151 Msa0108160:CDS 10.0%
!! GCAAATATTATTATTATAAG+TGG + chr1_3:19456129-19456148 None:intergenic 15.0%
!!! TACTTTTTTATTTATGCAAT+TGG + chr1_3:19456768-19456787 None:intergenic 15.0%
!! TGAAAACAAAAATAGATTTA+AGG - chr1_3:19456937-19456956 Msa0108160:intron 15.0%
!! GCAAATATTATTATTATAAG+TGG + chr1_3:19456129-19456148 None:intergenic 15.0%
!!! TACTTTTTTATTTATGCAAT+TGG + chr1_3:19456768-19456787 None:intergenic 15.0%
!! TGAAAACAAAAATAGATTTA+AGG - chr1_3:19456937-19456956 Msa0108160:intron 15.0%
!! ATGAATATTATCTCAAGAAA+AGG - chr1_3:19456045-19456064 Msa0108160:three_prime_UTR 20.0%
!!! AAAAGATTTTTTTTACCATC+TGG - chr1_3:19456090-19456109 Msa0108160:three_prime_UTR 20.0%
!! AGGATTATATGTAAAATCTT+TGG - chr1_3:19456498-19456517 Msa0108160:CDS 20.0%
!! ATGAATATTATCTCAAGAAA+AGG - chr1_3:19456045-19456064 Msa0108160:three_prime_UTR 20.0%
!!! AAAAGATTTTTTTTACCATC+TGG - chr1_3:19456090-19456109 Msa0108160:three_prime_UTR 20.0%
!! AGGATTATATGTAAAATCTT+TGG - chr1_3:19456498-19456517 Msa0108160:CDS 20.0%
! ACTTATGCATTTGAAAAATG+TGG + chr1_3:19455875-19455894 None:intergenic 25.0%
!!! CATTTTTCAAATGCATAAGT+TGG - chr1_3:19455875-19455894 Msa0108160:three_prime_UTR 25.0%
!!! AAGTTTTGTCACATACATAA+TGG + chr1_3:19455939-19455958 None:intergenic 25.0%
! TCAATGGAAAGATGATAATT+TGG + chr1_3:19455967-19455986 None:intergenic 25.0%
! AAGAAATTATTGTGAAGAGA+AGG + chr1_3:19455999-19456018 None:intergenic 25.0%
! ATTATAAGTGGAAGAGATAT+AGG + chr1_3:19456117-19456136 None:intergenic 25.0%
! ATAATCAGCTTCATTATCAA+AGG + chr1_3:19456235-19456254 None:intergenic 25.0%
!! TGATAATGAAGCTGATTATA+AGG - chr1_3:19456236-19456255 Msa0108160:CDS 25.0%
! TTTGCATGCAAGTTTATATT+TGG - chr1_3:19456302-19456321 Msa0108160:CDS 25.0%
!! TTGTTAGTGTTCTTTGTTTA+AGG - chr1_3:19456478-19456497 Msa0108160:CDS 25.0%
!! TAAAATCTTTGGAGAAAATG+TGG - chr1_3:19456509-19456528 Msa0108160:CDS 25.0%
!! AAAATCTTTGGAGAAAATGT+GGG - chr1_3:19456510-19456529 Msa0108160:CDS 25.0%
!!! TAGTTGGATTTTGATAAGTT+TGG - chr1_3:19456572-19456591 Msa0108160:CDS 25.0%
! AGTATGTAATATCAAAACGA+TGG - chr1_3:19456784-19456803 Msa0108160:intron 25.0%
!! AAAACGATGGTTTAAAATTG+TGG - chr1_3:19456797-19456816 Msa0108160:intron 25.0%
! AATTGTGGTATGCAATATAA+AGG - chr1_3:19456812-19456831 Msa0108160:intron 25.0%
! ATTGTGGTATGCAATATAAA+GGG - chr1_3:19456813-19456832 Msa0108160:intron 25.0%
!!! AACTATAATTTTGATCGCAT+CGG - chr1_3:19456863-19456882 Msa0108160:intron 25.0%
! ACTTATGCATTTGAAAAATG+TGG + chr1_3:19455875-19455894 None:intergenic 25.0%
!!! CATTTTTCAAATGCATAAGT+TGG - chr1_3:19455875-19455894 Msa0108160:three_prime_UTR 25.0%
!!! AAGTTTTGTCACATACATAA+TGG + chr1_3:19455939-19455958 None:intergenic 25.0%
! TCAATGGAAAGATGATAATT+TGG + chr1_3:19455967-19455986 None:intergenic 25.0%
! AAGAAATTATTGTGAAGAGA+AGG + chr1_3:19455999-19456018 None:intergenic 25.0%
! ATTATAAGTGGAAGAGATAT+AGG + chr1_3:19456117-19456136 None:intergenic 25.0%
! ATAATCAGCTTCATTATCAA+AGG + chr1_3:19456235-19456254 None:intergenic 25.0%
!! TGATAATGAAGCTGATTATA+AGG - chr1_3:19456236-19456255 Msa0108160:CDS 25.0%
! TTTGCATGCAAGTTTATATT+TGG - chr1_3:19456302-19456321 Msa0108160:CDS 25.0%
!! TTGTTAGTGTTCTTTGTTTA+AGG - chr1_3:19456478-19456497 Msa0108160:CDS 25.0%
!! TAAAATCTTTGGAGAAAATG+TGG - chr1_3:19456509-19456528 Msa0108160:CDS 25.0%
!! AAAATCTTTGGAGAAAATGT+GGG - chr1_3:19456510-19456529 Msa0108160:CDS 25.0%
!!! TAGTTGGATTTTGATAAGTT+TGG - chr1_3:19456572-19456591 Msa0108160:CDS 25.0%
! AGTATGTAATATCAAAACGA+TGG - chr1_3:19456784-19456803 Msa0108160:intron 25.0%
!! AAAACGATGGTTTAAAATTG+TGG - chr1_3:19456797-19456816 Msa0108160:intron 25.0%
! AATTGTGGTATGCAATATAA+AGG - chr1_3:19456812-19456831 Msa0108160:intron 25.0%
! ATTGTGGTATGCAATATAAA+GGG - chr1_3:19456813-19456832 Msa0108160:intron 25.0%
!!! AACTATAATTTTGATCGCAT+CGG - chr1_3:19456863-19456882 Msa0108160:intron 25.0%
TAATGGTAAGGACAATTGAT+TGG + chr1_3:19455922-19455941 None:intergenic 30.0%
TTGTCACATACATAATGGTA+AGG + chr1_3:19455934-19455953 None:intergenic 30.0%
TGGAAAGATGATAATTTGGA+GGG + chr1_3:19455963-19455982 None:intergenic 30.0%
ATGGAAAGATGATAATTTGG+AGG + chr1_3:19455964-19455983 None:intergenic 30.0%
! ATTTTCCCACTTTCTTGTAT+TGG - chr1_3:19456171-19456190 Msa0108160:CDS 30.0%
ATTGTGTTACCGTATTATAC+CGG - chr1_3:19456330-19456349 Msa0108160:CDS 30.0%
! AAATCTTTGGAGAAAATGTG+GGG - chr1_3:19456511-19456530 Msa0108160:CDS 30.0%
TTCCATCAACACTTTAATCA+TGG + chr1_3:19456547-19456566 None:intergenic 30.0%
!! TGATTAAAGTGTTGATGGAA+AGG - chr1_3:19456547-19456566 Msa0108160:CDS 30.0%
ATGTAGTCAAATTTGTGCAA+TGG - chr1_3:19456701-19456720 Msa0108160:intron 30.0%
! ATGCAATATAAAGGGTTTTG+AGG - chr1_3:19456821-19456840 Msa0108160:intron 30.0%
TAATGGTAAGGACAATTGAT+TGG + chr1_3:19455922-19455941 None:intergenic 30.0%
TTGTCACATACATAATGGTA+AGG + chr1_3:19455934-19455953 None:intergenic 30.0%
TGGAAAGATGATAATTTGGA+GGG + chr1_3:19455963-19455982 None:intergenic 30.0%
ATGGAAAGATGATAATTTGG+AGG + chr1_3:19455964-19455983 None:intergenic 30.0%
! ATTTTCCCACTTTCTTGTAT+TGG - chr1_3:19456171-19456190 Msa0108160:CDS 30.0%
ATTGTGTTACCGTATTATAC+CGG - chr1_3:19456330-19456349 Msa0108160:CDS 30.0%
! AAATCTTTGGAGAAAATGTG+GGG - chr1_3:19456511-19456530 Msa0108160:CDS 30.0%
TTCCATCAACACTTTAATCA+TGG + chr1_3:19456547-19456566 None:intergenic 30.0%
!! TGATTAAAGTGTTGATGGAA+AGG - chr1_3:19456547-19456566 Msa0108160:CDS 30.0%
ATGTAGTCAAATTTGTGCAA+TGG - chr1_3:19456701-19456720 Msa0108160:intron 30.0%
! ATGCAATATAAAGGGTTTTG+AGG - chr1_3:19456821-19456840 Msa0108160:intron 30.0%
!!! GTTGGAATGTTGGGTTTTTT+GGG + chr1_3:19455825-19455844 None:intergenic 35.0%
ATGTGGCATGAATTTCTTCT+AGG + chr1_3:19455858-19455877 None:intergenic 35.0%
! CAAATGCATAAGTTGGCAAA+TGG - chr1_3:19455882-19455901 Msa0108160:three_prime_UTR 35.0%
TTGGCAAATGGAAGAAACAA+TGG - chr1_3:19455894-19455913 Msa0108160:three_prime_UTR 35.0%
GAGAAGGACTAAGATATCAA+TGG + chr1_3:19455983-19456002 None:intergenic 35.0%
AGAACCAATAGAAGAATTGC+AGG + chr1_3:19456198-19456217 None:intergenic 35.0%
AACTAGTGAAGTACAAAGGT+TGG - chr1_3:19456436-19456455 Msa0108160:CDS 35.0%
!! GTCCATGATTAAAGTGTTGA+TGG - chr1_3:19456542-19456561 Msa0108160:CDS 35.0%
! TGTTGATGGAAAGGTTTAGT+TGG - chr1_3:19456556-19456575 Msa0108160:CDS 35.0%
ACTCTCAACATTACTCTTTC+CGG + chr1_3:19456627-19456646 None:intergenic 35.0%
!!! ATGTTGAGAGTTGTTGCTTT+TGG - chr1_3:19456636-19456655 Msa0108160:intron 35.0%
TTTGCTTCATGTTCTCAAAG+AGG - chr1_3:19456677-19456696 Msa0108160:intron 35.0%
AATTTGTGCAATGGCTTATG+TGG - chr1_3:19456710-19456729 Msa0108160:intron 35.0%
TGTGGCAGAAAAATTGAGAT+TGG - chr1_3:19456728-19456747 Msa0108160:intron 35.0%
!! GTCGTTTTAAATTGTGACGA+AGG + chr1_3:19456915-19456934 None:intergenic 35.0%
!! CGACTTTAAAACAGCATCTT+AGG + chr1_3:19457002-19457021 None:intergenic 35.0%
!!! GTTGGAATGTTGGGTTTTTT+GGG + chr1_3:19455825-19455844 None:intergenic 35.0%
ATGTGGCATGAATTTCTTCT+AGG + chr1_3:19455858-19455877 None:intergenic 35.0%
! CAAATGCATAAGTTGGCAAA+TGG - chr1_3:19455882-19455901 Msa0108160:three_prime_UTR 35.0%
TTGGCAAATGGAAGAAACAA+TGG - chr1_3:19455894-19455913 Msa0108160:three_prime_UTR 35.0%
GAGAAGGACTAAGATATCAA+TGG + chr1_3:19455983-19456002 None:intergenic 35.0%
AGAACCAATAGAAGAATTGC+AGG + chr1_3:19456198-19456217 None:intergenic 35.0%
AACTAGTGAAGTACAAAGGT+TGG - chr1_3:19456436-19456455 Msa0108160:CDS 35.0%
!! GTCCATGATTAAAGTGTTGA+TGG - chr1_3:19456542-19456561 Msa0108160:CDS 35.0%
! TGTTGATGGAAAGGTTTAGT+TGG - chr1_3:19456556-19456575 Msa0108160:CDS 35.0%
ACTCTCAACATTACTCTTTC+CGG + chr1_3:19456627-19456646 None:intergenic 35.0%
!!! ATGTTGAGAGTTGTTGCTTT+TGG - chr1_3:19456636-19456655 Msa0108160:intron 35.0%
TTTGCTTCATGTTCTCAAAG+AGG - chr1_3:19456677-19456696 Msa0108160:intron 35.0%
AATTTGTGCAATGGCTTATG+TGG - chr1_3:19456710-19456729 Msa0108160:intron 35.0%
TGTGGCAGAAAAATTGAGAT+TGG - chr1_3:19456728-19456747 Msa0108160:intron 35.0%
!! GTCGTTTTAAATTGTGACGA+AGG + chr1_3:19456915-19456934 None:intergenic 35.0%
!! CGACTTTAAAACAGCATCTT+AGG + chr1_3:19457002-19457021 None:intergenic 35.0%
!!! GGTTGGAATGTTGGGTTTTT+TGG + chr1_3:19455826-19455845 None:intergenic 40.0%
AAAAACCCAACATTCCAACC+TGG - chr1_3:19455826-19455845 Msa0108160:three_prime_UTR 40.0%
CAGGACCAATACAAGAAAGT+GGG + chr1_3:19456179-19456198 None:intergenic 40.0%
TGGTCCTGCAATTCTTCTAT+TGG - chr1_3:19456191-19456210 Msa0108160:CDS 40.0%
TTTGCAGCATCAACAGTTTC+TGG - chr1_3:19456276-19456295 Msa0108160:CDS 40.0%
TTGATGTCTTCGACACTTTC+AGG - chr1_3:19456363-19456382 Msa0108160:CDS 40.0%
AATGTGCAACATGTGTGTGT+AGG - chr1_3:19456388-19456407 Msa0108160:CDS 40.0%
TGTGTGTAGGAAAGAAGCTT+TGG - chr1_3:19456401-19456420 Msa0108160:CDS 40.0%
! AGGAAAGAAGCTTTGGTTGT+TGG - chr1_3:19456408-19456427 Msa0108160:CDS 40.0%
! AAAGAAGCTTTGGTTGTTGG+AGG - chr1_3:19456411-19456430 Msa0108160:CDS 40.0%
! AAGAAGCTTTGGTTGTTGGA+GGG - chr1_3:19456412-19456431 Msa0108160:CDS 40.0%
GGGAAACTAGTGAAGTACAA+AGG - chr1_3:19456432-19456451 Msa0108160:CDS 40.0%
TTTGATTGCAAAGTCACCAC+CGG - chr1_3:19456605-19456624 Msa0108160:intron 40.0%
!!! TTGAGAGTTGTTGCTTTTGG+AGG - chr1_3:19456639-19456658 Msa0108160:intron 40.0%
! ACGAAGGTTACTTTGAGAAG+CGG + chr1_3:19456899-19456918 None:intergenic 40.0%
!!! GGTTGGAATGTTGGGTTTTT+TGG + chr1_3:19455826-19455845 None:intergenic 40.0%
AAAAACCCAACATTCCAACC+TGG - chr1_3:19455826-19455845 Msa0108160:three_prime_UTR 40.0%
CAGGACCAATACAAGAAAGT+GGG + chr1_3:19456179-19456198 None:intergenic 40.0%
TGGTCCTGCAATTCTTCTAT+TGG - chr1_3:19456191-19456210 Msa0108160:CDS 40.0%
TTTGCAGCATCAACAGTTTC+TGG - chr1_3:19456276-19456295 Msa0108160:CDS 40.0%
TTGATGTCTTCGACACTTTC+AGG - chr1_3:19456363-19456382 Msa0108160:CDS 40.0%
AATGTGCAACATGTGTGTGT+AGG - chr1_3:19456388-19456407 Msa0108160:CDS 40.0%
TGTGTGTAGGAAAGAAGCTT+TGG - chr1_3:19456401-19456420 Msa0108160:CDS 40.0%
! AGGAAAGAAGCTTTGGTTGT+TGG - chr1_3:19456408-19456427 Msa0108160:CDS 40.0%
! AAAGAAGCTTTGGTTGTTGG+AGG - chr1_3:19456411-19456430 Msa0108160:CDS 40.0%
! AAGAAGCTTTGGTTGTTGGA+GGG - chr1_3:19456412-19456431 Msa0108160:CDS 40.0%
GGGAAACTAGTGAAGTACAA+AGG - chr1_3:19456432-19456451 Msa0108160:CDS 40.0%
TTTGATTGCAAAGTCACCAC+CGG - chr1_3:19456605-19456624 Msa0108160:intron 40.0%
!!! TTGAGAGTTGTTGCTTTTGG+AGG - chr1_3:19456639-19456658 Msa0108160:intron 40.0%
! ACGAAGGTTACTTTGAGAAG+CGG + chr1_3:19456899-19456918 None:intergenic 40.0%
!!! GGTTTTTTGGGAGCCAGATA+AGG + chr1_3:19455813-19455832 None:intergenic 45.0%
ATTTCTTCTAGGTCCCATCC+AGG + chr1_3:19455847-19455866 None:intergenic 45.0%
GGAAGAGATATAGGACCAGA+TGG + chr1_3:19456108-19456127 None:intergenic 45.0%
GCAGGACCAATACAAGAAAG+TGG + chr1_3:19456180-19456199 None:intergenic 45.0%
GCGTCGAAACCGGTATAATA+CGG + chr1_3:19456342-19456361 None:intergenic 45.0%
CTCAACATTACTCTTTCCGG+TGG + chr1_3:19456624-19456643 None:intergenic 45.0%
!!! GGTTTTTTGGGAGCCAGATA+AGG + chr1_3:19455813-19455832 None:intergenic 45.0%
ATTTCTTCTAGGTCCCATCC+AGG + chr1_3:19455847-19455866 None:intergenic 45.0%
GGAAGAGATATAGGACCAGA+TGG + chr1_3:19456108-19456127 None:intergenic 45.0%
GCAGGACCAATACAAGAAAG+TGG + chr1_3:19456180-19456199 None:intergenic 45.0%
GCGTCGAAACCGGTATAATA+CGG + chr1_3:19456342-19456361 None:intergenic 45.0%
CTCAACATTACTCTTTCCGG+TGG + chr1_3:19456624-19456643 None:intergenic 45.0%
ACCCAACATTCCAACCTGGA+TGG - chr1_3:19455830-19455849 Msa0108160:three_prime_UTR 50.0%
! CCCATCCAGGTTGGAATGTT+GGG + chr1_3:19455834-19455853 None:intergenic 50.0%
CCCAACATTCCAACCTGGAT+GGG - chr1_3:19455831-19455850 Msa0108160:three_prime_UTR 50.0%
! TCCCATCCAGGTTGGAATGT+TGG + chr1_3:19455835-19455854 None:intergenic 50.0%
AGACATCAACGCGTCGAAAC+CGG + chr1_3:19456352-19456371 None:intergenic 50.0%
ACCCAACATTCCAACCTGGA+TGG - chr1_3:19455830-19455849 Msa0108160:three_prime_UTR 50.0%
! CCCATCCAGGTTGGAATGTT+GGG + chr1_3:19455834-19455853 None:intergenic 50.0%
CCCAACATTCCAACCTGGAT+GGG - chr1_3:19455831-19455850 Msa0108160:three_prime_UTR 50.0%
! TCCCATCCAGGTTGGAATGT+TGG + chr1_3:19455835-19455854 None:intergenic 50.0%
AGACATCAACGCGTCGAAAC+CGG + chr1_3:19456352-19456371 None:intergenic 50.0%
CTTCTAGGTCCCATCCAGGT+TGG + chr1_3:19455843-19455862 None:intergenic 55.0%
CTTCTAGGTCCCATCCAGGT+TGG + chr1_3:19455843-19455862 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 19455802 19457091 19455802 ID=Msa0108160;Name=Msa0108160
chr1_3 mRNA 19455802 19457091 19455802 ID=Msa0108160-mRNA-1;Parent=Msa0108160;Name=Msa0108160-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0.5|1|0|0|2|315|194
chr1_3 exon 19455802 19456610 19455802 ID=Msa0108160-mRNA-1:exon:7019;Parent=Msa0108160-mRNA-1
chr1_3 exon 19457001 19457091 19457001 ID=Msa0108160-mRNA-1:exon:7018;Parent=Msa0108160-mRNA-1
chr1_3 CDS 19457001 19457091 19457001 ID=Msa0108160-mRNA-1:cds;Parent=Msa0108160-mRNA-1
chr1_3 CDS 19456117 19456610 19456117 ID=Msa0108160-mRNA-1:cds;Parent=Msa0108160-mRNA-1
chr1_3 three_prime_UTR 19455802 19456116 19455802 ID=Msa0108160-mRNA-1:three_prime_utr;Parent=Msa0108160-mRNA-1
Gene Sequence

>Msa0108160

ATGAATAGCCTTATCTGGCTCCCAAAAAACCCAACATTCCAACCTGGATGGGACCTAGAAGAAATTCATGCCACATTTTTCAAATGCATAACATCAACAGTTTCTGGAATTTTGCATGCAAGTTTATATTTGGATTCAATTGTGTTACCGTATTATACCGGTTTCGACGCGTTGATGTCTTCGACACTTTCAGGTGAATGTGCAACATGTGTGTGTAGGAAAGAAGCTTTGGTTGTTGGAGGGAAACTAGTGAAGTACAAAGGTTGGTCAATGACAACATTTTTTGTTGTTAGTGTTCTTTGTTTAAGGATTATATGTAAAATCTTTGGAGAAAATGTGGGGAAATTTGTGTCCATGATTAAAGTGTTGATGGAAAGGTTTAGTTGGATTTTGATAAGTTTGGATTGTGTTTATTTGATTGCAAAGTCACCACCGGAAAGAGTAATGTTGAGAGTTGTTGCTTTTGGAGGCATATTTCTTTTGATTTTGCTTCATGTTCTCAAAGAGGCATGTAGTCAAATTTGTGCAATGGCTTATGTGGCAGAAAAATTGAGATTGGTGTCAATATCAACACCAATTGCATAA
Protein sequence

>Msa0108160

MNSLIWLPKNPTFQPGWDLEEIHATFFKCITSTVSGILHASLYLDSIVLPYYTGFDALMSSTLSGECATCVCRKEALVVGGKLVKYKGWSMTTFFVVSVLCLRIICKIFGENVGKFVSMIKVLMERFSWILISLDCVYLIAKSPPERVMLRVVAFGGIFLLILLHVLKEACSQICAMAYVAEKLRLVSISTPIA*