Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171170 | XP_013468877.1 | 97.204 | 608 | 17 | 0 | 39 | 646 | 1 | 608 | 0.0 | 1231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171170 | sp|Q43092|SSG1_PEA | 85.434 | 611 | 78 | 5 | 39 | 646 | 1 | 603 | 0.0 | 1055 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171170 | A0A072VLQ9 | 97.204 | 608 | 17 | 0 | 39 | 646 | 1 | 608 | 0.0 | 1231 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031220 | Msa0171170 | 0.960565 | 1.059441e-118 | -8.615850e-47 |
| Msa0078510 | Msa0171170 | 0.939311 | 1.574315e-99 | -8.615850e-47 |
| Msa0126290 | Msa0171170 | 0.952853 | 9.853677e-111 | -8.615850e-47 |
| Msa0137200 | Msa0171170 | 0.858952 | 5.784407e-63 | -8.615850e-47 |
| Msa0171170 | Msa0182380 | 0.847482 | 1.124459e-59 | -8.615850e-47 |
| Msa0171170 | Msa0196370 | 0.803510 | 3.368076e-49 | -8.615850e-47 |
| Msa0171170 | Msa0238260 | 0.839700 | 1.354857e-57 | -8.615850e-47 |
| Msa0171170 | Msa0275690 | 0.829144 | 6.066404e-55 | -8.615850e-47 |
| Msa0171170 | Msa0316280 | 0.818748 | 1.666804e-52 | -8.615850e-47 |
| Msa0171170 | Msa0369360 | 0.816300 | 5.936866e-52 | -8.615850e-47 |
| Msa0171170 | Msa0416800 | 0.818703 | 1.707140e-52 | -8.615850e-47 |
| Msa0171170 | Msa0463460 | 0.804207 | 2.412862e-49 | -8.615850e-47 |
| Msa0171170 | Msa0509020 | 0.802614 | 5.159501e-49 | -8.615850e-47 |
| Msa0171170 | Msa0825620 | 0.804451 | 2.146282e-49 | -8.615850e-47 |
| Msa0171170 | Msa0847390 | 0.807932 | 3.970411e-50 | -8.615850e-47 |
| Msa0171170 | Msa1157170 | 0.802483 | 5.491189e-49 | -8.615850e-47 |
| Msa0171170 | Msa1404500 | 0.857489 | 1.576833e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171170 | MtrunA17_Chr1g0189131 | 97.204 | 608 | 17 | 0 | 39 | 646 | 1 | 608 | 0.0 | 1231 |
| Msa0171170 | MtrunA17_Chr8g0345941 | 74.177 | 577 | 145 | 2 | 73 | 646 | 41 | 616 | 0.0 | 882 |
| Msa0171170 | MtrunA17_Chr6g0453261 | 41.257 | 509 | 269 | 10 | 120 | 620 | 267 | 753 | 1.24e-116 | 365 |
| Msa0171170 | MtrunA17_Chr3g0126911 | 39.504 | 524 | 271 | 13 | 121 | 618 | 142 | 645 | 1.27e-111 | 349 |
| Msa0171170 | MtrunA17_Chr4g0051911 | 30.258 | 542 | 282 | 21 | 119 | 619 | 481 | 967 | 1.28e-51 | 192 |
| Msa0171170 | MtrunA17_Chr2g0288461 | 27.160 | 567 | 305 | 18 | 80 | 611 | 602 | 1095 | 1.95e-46 | 177 |
| Msa0171170 | MtrunA17_Chr5g0411441 | 22.779 | 439 | 289 | 14 | 118 | 539 | 189 | 594 | 1.28e-19 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171170 | AT1G32900.1 | 71.498 | 614 | 165 | 5 | 39 | 646 | 1 | 610 | 0.0 | 882 |
| Msa0171170 | AT3G01180.1 | 40.866 | 531 | 280 | 11 | 102 | 620 | 279 | 787 | 6.50e-115 | 362 |
| Msa0171170 | AT5G24300.2 | 39.845 | 517 | 274 | 10 | 121 | 618 | 143 | 641 | 7.01e-111 | 348 |
| Msa0171170 | AT5G24300.1 | 39.845 | 517 | 274 | 10 | 121 | 618 | 143 | 641 | 7.01e-111 | 348 |
| Msa0171170 | AT4G18240.1 | 29.795 | 537 | 285 | 19 | 118 | 615 | 540 | 1023 | 2.94e-53 | 197 |
| Msa0171170 | AT1G11720.1 | 29.038 | 551 | 300 | 15 | 87 | 611 | 545 | 1030 | 4.94e-53 | 197 |
| Msa0171170 | AT1G11720.2 | 29.038 | 551 | 300 | 15 | 87 | 611 | 597 | 1082 | 7.04e-53 | 197 |
Find 179 sgRNAs with CRISPR-Local
Find 329 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGGACTTGGTGATGTTCT+TGG | 0.252319 | 1_4:+55800335 | Msa0171170:CDS |
| TATATATATGTTGCTTAAAA+AGG | 0.253715 | 1_4:-55804217 | None:intergenic |
| GCAGAGTGCAGTAAGATTAT+AGG | 0.275918 | 1_4:+55804108 | Msa0171170:three_prime_UTR |
| AGTCTTGAGCCATGCAGTTC+TGG | 0.289019 | 1_4:-55803739 | None:intergenic |
| TATGCCAAGGAACTTGTTTC+CGG | 0.292552 | 1_4:+55802532 | Msa0171170:CDS |
| TGGTGGACTTCCACCTGTTT+TGG | 0.300685 | 1_4:+55800355 | Msa0171170:CDS |
| TGCAGGGACCAGCCAAACTA+TGG | 0.307764 | 1_4:+55803914 | Msa0171170:intron |
| GGGTGCATGCCTCAATTTCC+AGG | 0.341739 | 1_4:+55800070 | Msa0171170:CDS |
| GATTATCTCTTGCATGGCTT+GGG | 0.348471 | 1_4:-55803717 | None:intergenic |
| GGATTATCTCTTGCATGGCT+TGG | 0.348500 | 1_4:-55803718 | None:intergenic |
| ATTCATCAACTACGATTTAC+CGG | 0.361965 | 1_4:-55804143 | None:intergenic |
| AGAAGACAGAGGTGTGGAAT+TGG | 0.366409 | 1_4:+55802555 | Msa0171170:CDS |
| GACAATATCATTCGTTCAAC+TGG | 0.368569 | 1_4:+55802577 | Msa0171170:CDS |
| AAACTCTATGGTCCTAAAAC+TGG | 0.369328 | 1_4:+55801137 | Msa0171170:CDS |
| AGTTCCAAGGTACAATGATT+AGG | 0.373220 | 1_4:-55804183 | None:intergenic |
| GGCAACGAACCTGGAATAGA+TGG | 0.380159 | 1_4:+55803967 | Msa0171170:CDS |
| GACAAGAGTATCCCTTTGAT+AGG | 0.395078 | 1_4:+55802833 | Msa0171170:CDS |
| CTCTTCTTCCCTGGAAATTG+AGG | 0.396778 | 1_4:-55800079 | None:intergenic |
| GGAATGAATTTGGTGTTTGT+TGG | 0.396832 | 1_4:+55800284 | Msa0171170:CDS |
| ATCTCCTCTCCATCTATTCC+AGG | 0.397331 | 1_4:-55803976 | None:intergenic |
| AATGCAGTCTAAGTGAATAA+AGG | 0.399820 | 1_4:+55804324 | Msa0171170:three_prime_UTR |
| CATATCCTGGCAAGGCAATC+GGG | 0.403532 | 1_4:+55803086 | Msa0171170:CDS |
| TCGATGTATTTATCAGTTTG+TGG | 0.404855 | 1_4:-55802643 | None:intergenic |
| CCACAAGGCTCAAATCTACT+TGG | 0.408419 | 1_4:-55803172 | None:intergenic |
| TTGGCTCACAAAATAATTGC+TGG | 0.409575 | 1_4:+55803130 | Msa0171170:CDS |
| GAACTATTATCTGAACATTC+TGG | 0.409656 | 1_4:-55802925 | None:intergenic |
| CAATTGCATGCCATGCCATA+TGG | 0.410669 | 1_4:+55803202 | Msa0171170:CDS |
| CAGTGCGTTCTCCCATAGTT+TGG | 0.414595 | 1_4:-55803926 | None:intergenic |
| GTGCCCATCGTTTCATCAAC+TGG | 0.419733 | 1_4:+55803479 | Msa0171170:CDS |
| AGTGAATAAAGGCCTATTCC+AGG | 0.421292 | 1_4:+55804335 | Msa0171170:three_prime_UTR |
| GATAACTTATCTACATCATC+TGG | 0.425102 | 1_4:-55803659 | None:intergenic |
| ACTTTCAAACAACCTGGAAT+AGG | 0.425497 | 1_4:-55804347 | None:intergenic |
| TGATTACTCACCAGTGCTCC+TGG | 0.426710 | 1_4:-55799819 | None:intergenic |
| TGAAATCAATGTACAAGTCT+AGG | 0.429447 | 1_4:+55802105 | Msa0171170:CDS |
| TAGATTCAGCTTGTTATGTC+AGG | 0.430029 | 1_4:+55801184 | Msa0171170:CDS |
| TTGCATGGCTTGGGTACCAT+AGG | 0.431090 | 1_4:-55803708 | None:intergenic |
| TGAAGGGAAGGAAAATCAAT+TGG | 0.431550 | 1_4:+55802458 | Msa0171170:CDS |
| ACATATCCTGGCAAGGCAAT+CGG | 0.432716 | 1_4:+55803085 | Msa0171170:CDS |
| CTTTGATAGGATTCATTGGC+AGG | 0.436538 | 1_4:+55802846 | Msa0171170:CDS |
| TAGTCTTCGTTGCCAATGAT+TGG | 0.437773 | 1_4:+55802057 | Msa0171170:CDS |
| GCCACTCCATGAGCATCAAT+AGG | 0.438764 | 1_4:+55804024 | Msa0171170:exon |
| ATCCCTTTGATAGGATTCAT+TGG | 0.441198 | 1_4:+55802842 | Msa0171170:CDS |
| ATAAGCTTTACCGTTCCATA+TGG | 0.451972 | 1_4:-55803217 | None:intergenic |
| AAGAGCAGTGTGCCAATCAT+TGG | 0.452656 | 1_4:-55802069 | None:intergenic |
| AGTGAGAGTGGAAAGTTTAA+CGG | 0.454298 | 1_4:+55800245 | Msa0171170:CDS |
| GTGAGAGTGGAAAGTTTAAC+GGG | 0.454600 | 1_4:+55800246 | Msa0171170:CDS |
| ACTGTGAAAGAAGGCTATAC+AGG | 0.454630 | 1_4:+55803515 | Msa0171170:CDS |
| AACAAACTTACAGCCAAAAC+AGG | 0.454783 | 1_4:-55800368 | None:intergenic |
| AACAGCAGCAAATATTTCTC+AGG | 0.455902 | 1_4:+55801920 | Msa0171170:CDS |
| GAAATCAATGTACAAGTCTA+GGG | 0.457571 | 1_4:+55802106 | Msa0171170:CDS |
| AGTGTGTGGTGGAATGAATT+TGG | 0.460839 | 1_4:+55800274 | Msa0171170:CDS |
| AACCAGGCGTTTACTTATGT+TGG | 0.462582 | 1_4:+55800143 | Msa0171170:CDS |
| GCTACCCCGATTGCCTTGCC+AGG | 0.465671 | 1_4:-55803091 | None:intergenic |
| AACTATGAGGGGTTCTTCTG+TGG | 0.465840 | 1_4:+55800049 | Msa0171170:CDS |
| GCGTTCTCCCATAGTTTGGC+TGG | 0.466225 | 1_4:-55803922 | None:intergenic |
| AAAGGGATACTCTTGTCAAC+AGG | 0.467239 | 1_4:-55802827 | None:intergenic |
| CTCTTCTCATCATTGTTAGC+AGG | 0.467353 | 1_4:+55799788 | Msa0171170:CDS |
| ACATAATCATGGCAACTATG+AGG | 0.472184 | 1_4:+55800036 | Msa0171170:CDS |
| AGCAAAATTCAATGGCCCCT+TGG | 0.472444 | 1_4:+55803111 | Msa0171170:CDS |
| AAAGAGCTTCTGAATTCATC+AGG | 0.472676 | 1_4:-55802298 | None:intergenic |
| TTCTCCGGAAACAAGTTCCT+TGG | 0.474746 | 1_4:-55802536 | None:intergenic |
| CTGTTTAAGTTCAAAACCCT+TGG | 0.474928 | 1_4:-55801902 | None:intergenic |
| TAGTCTCTACTCTTCTTCCC+TGG | 0.476967 | 1_4:-55800088 | None:intergenic |
| AAATATTTCTCAGGACCATA+TGG | 0.478714 | 1_4:+55801929 | Msa0171170:CDS |
| GGAGAAGCAAATTGAACAGC+TGG | 0.479655 | 1_4:+55803057 | Msa0171170:CDS |
| CAGCTGGAGGTAACATATCC+TGG | 0.480164 | 1_4:+55803073 | Msa0171170:CDS |
| GAGGTCGCAGGCAACGAACC+TGG | 0.481045 | 1_4:+55803958 | Msa0171170:CDS |
| CGTGTAACTTTCAAACAACC+TGG | 0.481890 | 1_4:-55804353 | None:intergenic |
| TACATTGATTTCAAGTAGCA+TGG | 0.483987 | 1_4:-55802095 | None:intergenic |
| AAGACCGAGTCAAAACTCTA+TGG | 0.484633 | 1_4:+55801125 | Msa0171170:CDS |
| CAAAATGTAGTAGGCCATGT+TGG | 0.485472 | 1_4:+55799721 | Msa0171170:exon |
| GTACCTTGGAACTTAGTTGA+AGG | 0.488096 | 1_4:+55804193 | Msa0171170:three_prime_UTR |
| ACGAGTGAGAAAAGTGAGAG+TGG | 0.490069 | 1_4:+55800233 | Msa0171170:CDS |
| AAAATCAATTGGATGAAGGC+TGG | 0.490353 | 1_4:+55802469 | Msa0171170:CDS |
| TATTCATAACATCGCCTACC+AGG | 0.491456 | 1_4:+55802237 | Msa0171170:CDS |
| GAAGCTCTTCAAGCTGAGGT+TGG | 0.493585 | 1_4:+55802800 | Msa0171170:CDS |
| TTCCACACCTCTGTCTTCTC+CGG | 0.496327 | 1_4:-55802551 | None:intergenic |
| AAAATCGTTATCTAATACAT+GGG | 0.497803 | 1_4:+55804078 | Msa0171170:three_prime_UTR |
| GTTCTGGATTATCTCTTGCA+TGG | 0.498846 | 1_4:-55803723 | None:intergenic |
| GAGAAGAGCGAAGTCTGAAA+AGG | 0.503493 | 1_4:-55802269 | None:intergenic |
| CAGGTATACTACACCTGTGA+AGG | 0.511341 | 1_4:+55802441 | Msa0171170:intron |
| TGGAGAGGAGATTGCTCCAC+TGG | 0.512116 | 1_4:+55803987 | Msa0171170:CDS |
| CATAATCATGGCAACTATGA+GGG | 0.512735 | 1_4:+55800037 | Msa0171170:CDS |
| ACTATGAGGGGTTCTTCTGT+GGG | 0.513464 | 1_4:+55800050 | Msa0171170:CDS |
| GTGTTTGTTGGAGCTGAAGT+TGG | 0.514248 | 1_4:+55800296 | Msa0171170:CDS |
| CTGAAAAGGCATGTCTTCCC+TGG | 0.516524 | 1_4:-55802255 | None:intergenic |
| GGACTTGGTGATGTTCTTGG+TGG | 0.517016 | 1_4:+55800338 | Msa0171170:CDS |
| AAGAGAATTTGACATAATCA+TGG | 0.519378 | 1_4:+55800025 | Msa0171170:CDS |
| AAAATGTAGTAGGCCATGTT+GGG | 0.520389 | 1_4:+55799722 | Msa0171170:exon |
| GGTATCACTGGTATCGTGAA+TGG | 0.523833 | 1_4:+55802598 | Msa0171170:CDS |
| GGCCGCACTTGAGGCACCAA+GGG | 0.524631 | 1_4:+55801886 | Msa0171170:intron |
| TTGGAGCTGAAGTTGGACCT+TGG | 0.526427 | 1_4:+55800303 | Msa0171170:CDS |
| TGCCAATGAATCCTATCAAA+GGG | 0.530139 | 1_4:-55802844 | None:intergenic |
| ATCGGGGTAGCAAAATTCAA+TGG | 0.530949 | 1_4:+55803103 | Msa0171170:CDS |
| ATTCGTTCAACTGGTATCAC+TGG | 0.533593 | 1_4:+55802586 | Msa0171170:CDS |
| AACCAACATAAGTAAACGCC+TGG | 0.533689 | 1_4:-55800145 | None:intergenic |
| TCCACGTGTCAAAATGTAGT+AGG | 0.534629 | 1_4:+55799712 | Msa0171170:five_prime_UTR |
| GGAGATTGCTCCACTGGCAA+AGG | 0.537895 | 1_4:+55803993 | Msa0171170:CDS |
| ATGATCAATACAAGGATGCA+TGG | 0.538053 | 1_4:+55800751 | Msa0171170:CDS |
| CTGTTGAGCCTCGAGGTCGC+AGG | 0.539159 | 1_4:+55803946 | Msa0171170:CDS |
| CCACTCCATGAGCATCAATA+GGG | 0.543596 | 1_4:+55804025 | Msa0171170:exon |
| GGTACACTCTCCAGGAGCAC+TGG | 0.543700 | 1_4:+55799809 | Msa0171170:CDS |
| ACGAGAGCCCTTAAAACCTA+TGG | 0.543829 | 1_4:+55803692 | Msa0171170:CDS |
| TAATGACCGTATCTAAAATG+AGG | 0.547425 | 1_4:-55804052 | None:intergenic |
| CAACTTTCAGGCCGCACTTG+AGG | 0.549208 | 1_4:+55801877 | Msa0171170:intron |
| CAAGCATGAGATTAACGCAC+AGG | 0.549848 | 1_4:+55804376 | Msa0171170:three_prime_UTR |
| TGTTAGCAGGTACACTCTCC+AGG | 0.551706 | 1_4:+55799801 | Msa0171170:CDS |
| CTGCCAATGAATCCTATCAA+AGG | 0.556180 | 1_4:-55802845 | None:intergenic |
| TGGAGTAAGACTGGTGGACT+TGG | 0.556639 | 1_4:+55800323 | Msa0171170:CDS |
| GATATCCCTATTGATGCTCA+TGG | 0.558967 | 1_4:-55804030 | None:intergenic |
| TTCTTTCACTGCTACAAGAG+AGG | 0.559399 | 1_4:+55800928 | Msa0171170:CDS |
| CTCTCAACAAGCTGCACGTG+CGG | 0.562469 | 1_4:+55800174 | Msa0171170:CDS |
| ACAAGTTCCTTGGCATAATG+TGG | 0.565321 | 1_4:-55802526 | None:intergenic |
| AAGGAAAATCAATTGGATGA+AGG | 0.565800 | 1_4:+55802465 | Msa0171170:CDS |
| CACTGGTATCGTGAATGGCA+TGG | 0.566020 | 1_4:+55802603 | Msa0171170:CDS |
| CTTTACCGTTCCATATGGCA+TGG | 0.581344 | 1_4:-55803212 | None:intergenic |
| CTTGTTGACACTGTGAAAGA+AGG | 0.581668 | 1_4:+55803506 | Msa0171170:CDS |
| GCAGGGACCAGCCAAACTAT+GGG | 0.586907 | 1_4:+55803915 | Msa0171170:intron |
| ATACTACACCTGTGAAGGGA+AGG | 0.587286 | 1_4:+55802446 | Msa0171170:CDS |
| TGATCAATACAAGGATGCAT+GGG | 0.587857 | 1_4:+55800752 | Msa0171170:CDS |
| GTTGACTTTGAATAATAACC+AGG | 0.587891 | 1_4:+55800127 | Msa0171170:CDS |
| CACAAGGCTCAAATCTACTT+GGG | 0.588006 | 1_4:-55803171 | None:intergenic |
| CCAAGTAGATTTGAGCCTTG+TGG | 0.590941 | 1_4:+55803172 | Msa0171170:CDS |
| GAAAGAAGCTCTTCAAGCTG+AGG | 0.591901 | 1_4:+55802796 | Msa0171170:CDS |
| GGAACCTAATCATTGTACCT+TGG | 0.592224 | 1_4:+55804179 | Msa0171170:three_prime_UTR |
| CCCTATTGATGCTCATGGAG+TGG | 0.595038 | 1_4:-55804025 | None:intergenic |
| AACGGGAAAATAGTGTGTGG+TGG | 0.595255 | 1_4:+55800263 | Msa0171170:CDS |
| GTTGGACCTTGGAGTAAGAC+TGG | 0.596664 | 1_4:+55800314 | Msa0171170:CDS |
| AAAGGCATGTCTTCCCTGGT+AGG | 0.599806 | 1_4:-55802251 | None:intergenic |
| AGGCCGCACTTGAGGCACCA+AGG | 0.607015 | 1_4:+55801885 | Msa0171170:intron |
| GGACCTTCAACTAAGTTCCA+AGG | 0.607693 | 1_4:-55804196 | None:intergenic |
| TCCACTGGCAAAGGAAAATG+TGG | 0.611171 | 1_4:+55804002 | Msa0171170:CDS |
| ACCACCAGTTGATGAAACGA+TGG | 0.611672 | 1_4:-55803483 | None:intergenic |
| AACTACGATTTACCGGCTTG+AGG | 0.611964 | 1_4:-55804136 | None:intergenic |
| AGACGATAAAGCAGCACGTG+CGG | 0.613734 | 1_4:-55800201 | None:intergenic |
| AAGAAGAGTGTAACCCAACA+TGG | 0.614207 | 1_4:-55799735 | None:intergenic |
| GGCTATACAGGATTCCACGC+TGG | 0.615421 | 1_4:+55803527 | Msa0171170:CDS |
| GCATGCCATGCCATATGGAA+CGG | 0.617491 | 1_4:+55803207 | Msa0171170:CDS |
| TTGGAATATGAAAGGTGTGG+GGG | 0.621316 | 1_4:+55801102 | Msa0171170:intron |
| GGAGGTAACATATCCTGGCA+AGG | 0.628738 | 1_4:+55803078 | Msa0171170:CDS |
| CCACCAGTTGATGAAACGAT+GGG | 0.631976 | 1_4:-55803482 | None:intergenic |
| ATAATCATGGCAACTATGAG+GGG | 0.633095 | 1_4:+55800038 | Msa0171170:CDS |
| AGGTATACTACACCTGTGAA+GGG | 0.634448 | 1_4:+55802442 | Msa0171170:intron |
| GGTGCATGCCTCAATTTCCA+GGG | 0.635599 | 1_4:+55800071 | Msa0171170:CDS |
| TTATAGGCGTAGCCTCAAGC+CGG | 0.635841 | 1_4:+55804124 | Msa0171170:three_prime_UTR |
| ATATCCTGGCAAGGCAATCG+GGG | 0.636935 | 1_4:+55803087 | Msa0171170:CDS |
| ACCGCGTTATGATCAATACA+AGG | 0.637600 | 1_4:+55800743 | Msa0171170:CDS |
| CGCTGGAGCGTTCAACGTGG+AGG | 0.637600 | 1_4:+55803544 | Msa0171170:CDS |
| AACCCTTGGTGCCTCAAGTG+CGG | 0.637721 | 1_4:-55801888 | None:intergenic |
| TTCCGGAGAAGACAGAGGTG+TGG | 0.638206 | 1_4:+55802549 | Msa0171170:CDS |
| GGCAGGCTAGAAGAGCAGAA+AGG | 0.639584 | 1_4:+55802863 | Msa0171170:CDS |
| GTTCGTTGCCTGCGACCTCG+AGG | 0.639956 | 1_4:-55803954 | None:intergenic |
| AAATCAATGTACAAGTCTAG+GGG | 0.641348 | 1_4:+55802107 | Msa0171170:CDS |
| AGTCCACCAGTCTTACTCCA+AGG | 0.645736 | 1_4:-55800320 | None:intergenic |
| CGAACCTGGAATAGATGGAG+AGG | 0.647618 | 1_4:+55803972 | Msa0171170:CDS |
| TGCAATTGAACTAGACCACA+AGG | 0.648947 | 1_4:-55803187 | None:intergenic |
| AAACTTACAGCCAAAACAGG+TGG | 0.650863 | 1_4:-55800365 | None:intergenic |
| CCCATCGTTTCATCAACTGG+TGG | 0.651767 | 1_4:+55803482 | Msa0171170:CDS |
| ACTTACAGTGAACACTCGGT+CGG | 0.652659 | 1_4:-55802503 | None:intergenic |
| ATTCATAACATCGCCTACCA+GGG | 0.655105 | 1_4:+55802238 | Msa0171170:CDS |
| GTGGACTTACAGTGAACACT+CGG | 0.656424 | 1_4:-55802507 | None:intergenic |
| GAAGCAAATTGAACAGCTGG+AGG | 0.658112 | 1_4:+55803060 | Msa0171170:CDS |
| CTTGTTTCCGGAGAAGACAG+AGG | 0.659038 | 1_4:+55802544 | Msa0171170:CDS |
| AGAGATAATCCAGAACTGCA+TGG | 0.661718 | 1_4:+55803730 | Msa0171170:CDS |
| GAACGCACTGTTGAGCCTCG+AGG | 0.665022 | 1_4:+55803939 | Msa0171170:CDS |
| TGTAAGTCCACATTATGCCA+AGG | 0.667821 | 1_4:+55802519 | Msa0171170:CDS |
| CCACGTTGAACGCTCCAGCG+TGG | 0.696561 | 1_4:-55803541 | None:intergenic |
| AAGCATGAGATTAACGCACA+GGG | 0.697100 | 1_4:+55804377 | Msa0171170:three_prime_UTR |
| TTTGGAATATGAAAGGTGTG+GGG | 0.705387 | 1_4:+55801101 | Msa0171170:intron |
| ATGGCATGGATAATCGTGAG+TGG | 0.706253 | 1_4:+55802617 | Msa0171170:CDS |
| AATCAATGTACAAGTCTAGG+GGG | 0.707090 | 1_4:+55802108 | Msa0171170:CDS |
| GGACCTTGGAGTAAGACTGG+TGG | 0.707930 | 1_4:+55800317 | Msa0171170:CDS |
| GGATACTGATGTGTCTGTCG+AGG | 0.708137 | 1_4:+55800773 | Msa0171170:CDS |
| TTTAACGGGAAAATAGTGTG+TGG | 0.709211 | 1_4:+55800260 | Msa0171170:CDS |
| CCACGCTGGAGCGTTCAACG+TGG | 0.710739 | 1_4:+55803541 | Msa0171170:CDS |
| TCCTTGTATTGATCATAACG+CGG | 0.721750 | 1_4:-55800744 | None:intergenic |
| TGATGAATGAGTTCTAACGA+AGG | 0.732138 | 1_4:+55804158 | Msa0171170:three_prime_UTR |
| TAACAATGATGAGAAGAGTG+TGG | 0.736932 | 1_4:-55799783 | None:intergenic |
| GCGGTGATACAGTCATAACA+CGG | 0.782318 | 1_4:-55800725 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTGATAATTTAATTATTTT+AGG | + | chr1_4:55800692-55800711 | Msa0171170:intron | 10.0% |
| !!! | GTGATAATTTAATTATTTTA+GGG | + | chr1_4:55800693-55800712 | Msa0171170:intron | 10.0% |
| !! | CGAAAACATAAAATAAAATT+AGG | - | chr1_4:55799867-55799886 | None:intergenic | 15.0% |
| !! | AATAATTAAATTATCACATC+AGG | - | chr1_4:55800690-55800709 | None:intergenic | 15.0% |
| !!! | ATTTAATTATTTTAGGGAAA+TGG | + | chr1_4:55800699-55800718 | Msa0171170:intron | 15.0% |
| !!! | TTTAATTATTTTAGGGAAAT+GGG | + | chr1_4:55800700-55800719 | Msa0171170:intron | 15.0% |
| !! | ATTCAAATTCAATCTTATAA+AGG | - | chr1_4:55801046-55801065 | None:intergenic | 15.0% |
| !! | TAAACTAAAAGATTATAACT+TGG | + | chr1_4:55803609-55803628 | Msa0171170:intron | 15.0% |
| !! | AAACTAAAAGATTATAACTT+GGG | + | chr1_4:55803610-55803629 | Msa0171170:intron | 15.0% |
| !!! | TATATATATGTTGCTTAAAA+AGG | - | chr1_4:55804220-55804239 | None:intergenic | 15.0% |
| !! | ATTTATTACTAATACATGCA+TGG | + | chr1_4:55800489-55800508 | Msa0171170:intron | 20.0% |
| !! | GTATAATTCTTGAAAGAAAT+TGG | + | chr1_4:55800825-55800844 | Msa0171170:intron | 20.0% |
| !! | ATGTAAATAAATCATCAACA+AGG | - | chr1_4:55800858-55800877 | None:intergenic | 20.0% |
| !!! | GTTAAACTGACTTTATTTTT+TGG | + | chr1_4:55801076-55801095 | Msa0171170:intron | 20.0% |
| !! | AATACACAAAAGTTAATAGA+GGG | - | chr1_4:55801242-55801261 | None:intergenic | 20.0% |
| !! | AAATACACAAAAGTTAATAG+AGG | - | chr1_4:55801243-55801262 | None:intergenic | 20.0% |
| !!! | CTATTAACTTTTGTGTATTT+TGG | + | chr1_4:55801243-55801262 | Msa0171170:intron | 20.0% |
| !! | ATTGTAAAGTGATTTATGTA+TGG | - | chr1_4:55801423-55801442 | None:intergenic | 20.0% |
| !! | TACAAAATCTATTTAGCATA+AGG | + | chr1_4:55802175-55802194 | Msa0171170:intron | 20.0% |
| !!! | TTTTGTTTTGTTTCTTTTTC+AGG | + | chr1_4:55802422-55802441 | Msa0171170:intron | 20.0% |
| !! | AAAAATCGTTATCTAATACA+TGG | + | chr1_4:55804077-55804096 | Msa0171170:three_prime_UTR | 20.0% |
| !! | AAAATCGTTATCTAATACAT+GGG | + | chr1_4:55804078-55804097 | Msa0171170:three_prime_UTR | 20.0% |
| !! | ATATAGCTTAAACTAACTTA+AGG | + | chr1_4:55804235-55804254 | Msa0171170:intron | 20.0% |
| !!! | CTTAAGGTTTATTTAGAATA+AGG | + | chr1_4:55804251-55804270 | Msa0171170:intron | 20.0% |
| ! | ATAATAGTATATGTGACAGA+AGG | - | chr1_4:55799960-55799979 | None:intergenic | 25.0% |
| !! | TCCAACTATGTTGTTAATTT+TGG | + | chr1_4:55799983-55800002 | Msa0171170:intron | 25.0% |
| ! | ACCAAAATTAACAACATAGT+TGG | - | chr1_4:55799987-55800006 | None:intergenic | 25.0% |
| ! | AAGAGAATTTGACATAATCA+TGG | + | chr1_4:55800025-55800044 | Msa0171170:CDS | 25.0% |
| !!! | CCTTATGTTTTAATTTACAC+CGG | + | chr1_4:55800409-55800428 | Msa0171170:intron | 25.0% |
| !! | ATAGAAATACAACCTTTTCA+AGG | - | chr1_4:55800987-55801006 | None:intergenic | 25.0% |
| !!! | ATTTAGTTTTCATCAATCAG+TGG | + | chr1_4:55801008-55801027 | Msa0171170:intron | 25.0% |
| !!! | TGACTTTATTTTTTGGCATT+TGG | + | chr1_4:55801083-55801102 | Msa0171170:intron | 25.0% |
| !! | TTATAATCAGTTCCAGTTTT+AGG | - | chr1_4:55801152-55801171 | None:intergenic | 25.0% |
| !!! | AGAATTGATTTTGACTTGTT+TGG | + | chr1_4:55801303-55801322 | Msa0171170:intron | 25.0% |
| !!! | TTCTTGAGTACAATTGATTT+TGG | + | chr1_4:55801329-55801348 | Msa0171170:intron | 25.0% |
| !! | TTGCTTCAACTATTGAATTT+TGG | + | chr1_4:55801357-55801376 | Msa0171170:intron | 25.0% |
| !! | AATCACAATATTTGCTCTTT+TGG | + | chr1_4:55801623-55801642 | Msa0171170:intron | 25.0% |
| !! | AGTCATGTATTTCAATTTTC+AGG | + | chr1_4:55801684-55801703 | Msa0171170:intron | 25.0% |
| ! | AAAACACAAATCTTAGTCTA+GGG | - | chr1_4:55801723-55801742 | None:intergenic | 25.0% |
| ! | AGATATGAACATTATCAATG+TGG | + | chr1_4:55801850-55801869 | Msa0171170:intron | 25.0% |
| ! | AAAATCTATTTAGCATAAGG+AGG | + | chr1_4:55802178-55802197 | Msa0171170:intron | 25.0% |
| ! | TACAAATCACATTAGATCAT+TGG | + | chr1_4:55802356-55802375 | Msa0171170:intron | 25.0% |
| ! | AAACAAAACAAAAACATGCA+CGG | - | chr1_4:55802415-55802434 | None:intergenic | 25.0% |
| !!! | TCATCAAAACTGTCATTTTT+AGG | + | chr1_4:55802751-55802770 | Msa0171170:intron | 25.0% |
| !!! | TAATTAGCATAGCTTTGTTT+AGG | - | chr1_4:55802996-55803015 | None:intergenic | 25.0% |
| !! | ATTCATGTTCTTTTTACTTC+AGG | + | chr1_4:55803015-55803034 | Msa0171170:intron | 25.0% |
| !! | TTCATGTTCTTTTTACTTCA+GGG | + | chr1_4:55803016-55803035 | Msa0171170:intron | 25.0% |
| ! | CAGGAAATTCAAATTTGAAA+TGG | - | chr1_4:55803257-55803276 | None:intergenic | 25.0% |
| ! | GTTGACTTTGAATAATAACC+AGG | + | chr1_4:55800127-55800146 | Msa0171170:CDS | 30.0% |
| CCGGTGTAAATTAAAACATA+AGG | - | chr1_4:55800412-55800431 | None:intergenic | 30.0% | |
| GTGAACTACACAAAATTACA+GGG | - | chr1_4:55800455-55800474 | None:intergenic | 30.0% | |
| AGTGAACTACACAAAATTAC+AGG | - | chr1_4:55800456-55800475 | None:intergenic | 30.0% | |
| !! | ATTTTGTTGTAGCTCAAAGT+TGG | + | chr1_4:55800883-55800902 | Msa0171170:intron | 30.0% |
| ! | TTTGGCATTTGGAATATGAA+AGG | + | chr1_4:55801094-55801113 | Msa0171170:intron | 30.0% |
| ! | ATTTGGAATATGAAAGGTGT+GGG | + | chr1_4:55801100-55801119 | Msa0171170:intron | 30.0% |
| GGATAAATTCATGCAAAAGT+GGG | - | chr1_4:55801402-55801421 | None:intergenic | 30.0% | |
| TGGATAAATTCATGCAAAAG+TGG | - | chr1_4:55801403-55801422 | None:intergenic | 30.0% | |
| !! | TAATTAACGAGCTTTGAGTT+TGG | - | chr1_4:55801511-55801530 | None:intergenic | 30.0% |
| CAAAGCTCGTTAATTACTAT+TGG | + | chr1_4:55801515-55801534 | Msa0171170:intron | 30.0% | |
| CCAATAATAAGTGAATGACT+GGG | + | chr1_4:55801561-55801580 | Msa0171170:intron | 30.0% | |
| CAAAACACAAATCTTAGTCT+AGG | - | chr1_4:55801724-55801743 | None:intergenic | 30.0% | |
| TGTATGATGATTGATGAGAT+TGG | + | chr1_4:55801766-55801785 | Msa0171170:intron | 30.0% | |
| ! | CATATCTAGAGTCAGTATAA+AGG | - | chr1_4:55801837-55801856 | None:intergenic | 30.0% |
| AAATATTTCTCAGGACCATA+TGG | + | chr1_4:55801929-55801948 | Msa0171170:CDS | 30.0% | |
| !! | TACATTGATTTCAAGTAGCA+TGG | - | chr1_4:55802098-55802117 | None:intergenic | 30.0% |
| TGAAATCAATGTACAAGTCT+AGG | + | chr1_4:55802105-55802124 | Msa0171170:CDS | 30.0% | |
| GAAATCAATGTACAAGTCTA+GGG | + | chr1_4:55802106-55802125 | Msa0171170:CDS | 30.0% | |
| AAATCAATGTACAAGTCTAG+GGG | + | chr1_4:55802107-55802126 | Msa0171170:CDS | 30.0% | |
| !! | GTGAGGATTTGTTTACTTTT+CGG | + | chr1_4:55802149-55802168 | Msa0171170:intron | 30.0% |
| !! | TGAGGATTTGTTTACTTTTC+GGG | + | chr1_4:55802150-55802169 | Msa0171170:intron | 30.0% |
| ACTTTCTTTGTAATCATCAC+AGG | + | chr1_4:55802204-55802223 | Msa0171170:intron | 30.0% | |
| !!! | AGCTCTTTTGACTTTATTGA+TGG | + | chr1_4:55802313-55802332 | Msa0171170:CDS | 30.0% |
| !!! | GCTCTTTTGACTTTATTGAT+GGG | + | chr1_4:55802314-55802333 | Msa0171170:CDS | 30.0% |
| ! | GATCTAATGTGATTTGTAGA+AGG | - | chr1_4:55802354-55802373 | None:intergenic | 30.0% |
| AAGGAAAATCAATTGGATGA+AGG | + | chr1_4:55802465-55802484 | Msa0171170:CDS | 30.0% | |
| TCGATGTATTTATCAGTTTG+TGG | - | chr1_4:55802646-55802665 | None:intergenic | 30.0% | |
| GAACTATTATCTGAACATTC+TGG | - | chr1_4:55802928-55802947 | None:intergenic | 30.0% | |
| TTAGGTAATAGGATCAGAAA+AGG | - | chr1_4:55802978-55802997 | None:intergenic | 30.0% | |
| !! | CATAGCTTTGTTTAGGTAAT+AGG | - | chr1_4:55802989-55803008 | None:intergenic | 30.0% |
| ! | TCAATCACTATATGATTTGC+AGG | - | chr1_4:55803276-55803295 | None:intergenic | 30.0% |
| ! | ATCTTTTAGACCTGATTTAC+TGG | + | chr1_4:55803336-55803355 | Msa0171170:intron | 30.0% |
| TGATTTACTGGTCATAAAGT+GGG | + | chr1_4:55803348-55803367 | Msa0171170:intron | 30.0% | |
| !!! | TGATGTTTTAATTGTGTGAC+TGG | + | chr1_4:55803387-55803406 | Msa0171170:intron | 30.0% |
| GTCAAGATGAAATGTAGTTA+TGG | - | chr1_4:55803427-55803446 | None:intergenic | 30.0% | |
| CATTTATGTTAGGAACATCA+AGG | - | chr1_4:55803449-55803468 | None:intergenic | 30.0% | |
| CTGTTTCAAGCATTTATGTT+AGG | - | chr1_4:55803459-55803478 | None:intergenic | 30.0% | |
| CTAACATAAATGCTTGAAAC+AGG | + | chr1_4:55803457-55803476 | Msa0171170:intron | 30.0% | |
| GATAACTTATCTACATCATC+TGG | - | chr1_4:55803662-55803681 | None:intergenic | 30.0% | |
| TAAGATGTTTACACCTCTAT+AGG | + | chr1_4:55803827-55803846 | Msa0171170:intron | 30.0% | |
| TTCATTATTCATGCCTATAG+AGG | - | chr1_4:55803843-55803862 | None:intergenic | 30.0% | |
| ! | GGATATCCTCATTTTAGATA+CGG | + | chr1_4:55804046-55804065 | Msa0171170:three_prime_UTR | 30.0% |
| ! | TAATGACCGTATCTAAAATG+AGG | - | chr1_4:55804055-55804074 | None:intergenic | 30.0% |
| ATTCATCAACTACGATTTAC+CGG | - | chr1_4:55804146-55804165 | None:intergenic | 30.0% | |
| AATGCAGTCTAAGTGAATAA+AGG | + | chr1_4:55804324-55804343 | Msa0171170:three_prime_UTR | 30.0% | |
| AAAATGTAGTAGGCCATGTT+GGG | + | chr1_4:55799722-55799741 | Msa0171170:exon | 35.0% | |
| !! | AAGAGTGTGGTATTTTGTAG+TGG | - | chr1_4:55799773-55799792 | None:intergenic | 35.0% |
| TAACAATGATGAGAAGAGTG+TGG | - | chr1_4:55799786-55799805 | None:intergenic | 35.0% | |
| ACATAATCATGGCAACTATG+AGG | + | chr1_4:55800036-55800055 | Msa0171170:CDS | 35.0% | |
| CATAATCATGGCAACTATGA+GGG | + | chr1_4:55800037-55800056 | Msa0171170:CDS | 35.0% | |
| ATAATCATGGCAACTATGAG+GGG | + | chr1_4:55800038-55800057 | Msa0171170:CDS | 35.0% | |
| AGTGAGAGTGGAAAGTTTAA+CGG | + | chr1_4:55800245-55800264 | Msa0171170:CDS | 35.0% | |
| TTTAACGGGAAAATAGTGTG+TGG | + | chr1_4:55800260-55800279 | Msa0171170:CDS | 35.0% | |
| !! | GGAATGAATTTGGTGTTTGT+TGG | + | chr1_4:55800284-55800303 | Msa0171170:CDS | 35.0% |
| AACAAACTTACAGCCAAAAC+AGG | - | chr1_4:55800371-55800390 | None:intergenic | 35.0% | |
| TGTGTAGTTCACTGTGAATT+TGG | + | chr1_4:55800463-55800482 | Msa0171170:intron | 35.0% | |
| ACTAATACATGCATGGACAT+CGG | + | chr1_4:55800496-55800515 | Msa0171170:intron | 35.0% | |
| AATGTAATCACACGTGTTTG+TGG | + | chr1_4:55800577-55800596 | Msa0171170:intron | 35.0% | |
| ! | TCCTTGTATTGATCATAACG+CGG | - | chr1_4:55800747-55800766 | None:intergenic | 35.0% |
| ATGATCAATACAAGGATGCA+TGG | + | chr1_4:55800751-55800770 | Msa0171170:CDS | 35.0% | |
| TGATCAATACAAGGATGCAT+GGG | + | chr1_4:55800752-55800771 | Msa0171170:CDS | 35.0% | |
| !! | CAACCTTTTCAAGGAAAAGT+GGG | - | chr1_4:55800978-55800997 | None:intergenic | 35.0% |
| !! | ACAACCTTTTCAAGGAAAAG+TGG | - | chr1_4:55800979-55800998 | None:intergenic | 35.0% |
| ! | CATTTGGAATATGAAAGGTG+TGG | + | chr1_4:55801099-55801118 | Msa0171170:intron | 35.0% |
| ! | TTTGGAATATGAAAGGTGTG+GGG | + | chr1_4:55801101-55801120 | Msa0171170:intron | 35.0% |
| AAACTCTATGGTCCTAAAAC+TGG | + | chr1_4:55801137-55801156 | Msa0171170:CDS | 35.0% | |
| !! | TAGATTCAGCTTGTTATGTC+AGG | + | chr1_4:55801184-55801203 | Msa0171170:CDS | 35.0% |
| AAAGTTAATAGAGGGAACAC+AGG | - | chr1_4:55801234-55801253 | None:intergenic | 35.0% | |
| !!! | TGTGTATTTTGGTTCCACTT+TGG | + | chr1_4:55801254-55801273 | Msa0171170:intron | 35.0% |
| GCTATAATCACGATTTGTGA+AGG | - | chr1_4:55801542-55801561 | None:intergenic | 35.0% | |
| GCCAATAATAAGTGAATGAC+TGG | + | chr1_4:55801560-55801579 | Msa0171170:intron | 35.0% | |
| CCCAGTCATTCACTTATTAT+TGG | - | chr1_4:55801564-55801583 | None:intergenic | 35.0% | |
| GACTTCTACTCAATTGTTTG+AGG | - | chr1_4:55801668-55801687 | None:intergenic | 35.0% | |
| CAATGTGGTTAACAACTTTC+AGG | + | chr1_4:55801865-55801884 | Msa0171170:intron | 35.0% | |
| ! | CTGTTTAAGTTCAAAACCCT+TGG | - | chr1_4:55801905-55801924 | None:intergenic | 35.0% |
| AACAGCAGCAAATATTTCTC+AGG | + | chr1_4:55801920-55801939 | Msa0171170:CDS | 35.0% | |
| AATCAATGTACAAGTCTAGG+GGG | + | chr1_4:55802108-55802127 | Msa0171170:CDS | 35.0% | |
| TTTACAAAAACGCAAAGGTG+AGG | + | chr1_4:55802132-55802151 | Msa0171170:intron | 35.0% | |
| AAAGAGCTTCTGAATTCATC+AGG | - | chr1_4:55802301-55802320 | None:intergenic | 35.0% | |
| ! | CTTTATTGATGGGTACGATA+CGG | + | chr1_4:55802324-55802343 | Msa0171170:intron | 35.0% |
| AAAACAAAAACATGCACGGT+TGG | - | chr1_4:55802411-55802430 | None:intergenic | 35.0% | |
| TGAAGGGAAGGAAAATCAAT+TGG | + | chr1_4:55802458-55802477 | Msa0171170:CDS | 35.0% | |
| AAAATCAATTGGATGAAGGC+TGG | + | chr1_4:55802469-55802488 | Msa0171170:CDS | 35.0% | |
| GACAATATCATTCGTTCAAC+TGG | + | chr1_4:55802577-55802596 | Msa0171170:CDS | 35.0% | |
| ATGAGGAATCCACATTAAAC+AGG | - | chr1_4:55802705-55802724 | None:intergenic | 35.0% | |
| !! | ATGACAGTTTTGATGAGCAT+GGG | - | chr1_4:55802747-55802766 | None:intergenic | 35.0% |
| !! | AATGACAGTTTTGATGAGCA+TGG | - | chr1_4:55802748-55802767 | None:intergenic | 35.0% |
| ATCCCTTTGATAGGATTCAT+TGG | + | chr1_4:55802842-55802861 | Msa0171170:CDS | 35.0% | |
| TGCCAATGAATCCTATCAAA+GGG | - | chr1_4:55802847-55802866 | None:intergenic | 35.0% | |
| ! | TTCTTTTTACTTCAGGGAAC+CGG | + | chr1_4:55803022-55803041 | Msa0171170:intron | 35.0% |
| !! | CAATTATTTTGTGAGCCAAG+GGG | - | chr1_4:55803129-55803148 | None:intergenic | 35.0% |
| !! | GCAATTATTTTGTGAGCCAA+GGG | - | chr1_4:55803130-55803149 | None:intergenic | 35.0% |
| !! | AGCAATTATTTTGTGAGCCA+AGG | - | chr1_4:55803131-55803150 | None:intergenic | 35.0% |
| TTGGCTCACAAAATAATTGC+TGG | + | chr1_4:55803130-55803149 | Msa0171170:CDS | 35.0% | |
| ATAAGCTTTACCGTTCCATA+TGG | - | chr1_4:55803220-55803239 | None:intergenic | 35.0% | |
| TCACACTGAGTGATCTAAAT+TGG | + | chr1_4:55803297-55803316 | Msa0171170:intron | 35.0% | |
| ACTGAGTGATCTAAATTGGA+TGG | + | chr1_4:55803301-55803320 | Msa0171170:intron | 35.0% | |
| CACTTTATGACCAGTAAATC+AGG | - | chr1_4:55803349-55803368 | None:intergenic | 35.0% | |
| CTGATTTACTGGTCATAAAG+TGG | + | chr1_4:55803347-55803366 | Msa0171170:intron | 35.0% | |
| !! | TTGGGTACCATAGGTTTTAA+GGG | - | chr1_4:55803702-55803721 | None:intergenic | 35.0% |
| AAAGTTTGATACAGCAACAG+CGG | - | chr1_4:55803788-55803807 | None:intergenic | 35.0% | |
| CAGTTCAGCTAATCATCAAT+GGG | + | chr1_4:55803881-55803900 | Msa0171170:intron | 35.0% | |
| AATGGGTGATTTCTAATGCA+GGG | + | chr1_4:55803898-55803917 | Msa0171170:intron | 35.0% | |
| ! | TGATGAATGAGTTCTAACGA+AGG | + | chr1_4:55804158-55804177 | Msa0171170:three_prime_UTR | 35.0% |
| AGTTCCAAGGTACAATGATT+AGG | - | chr1_4:55804186-55804205 | None:intergenic | 35.0% | |
| ACTTTCAAACAACCTGGAAT+AGG | - | chr1_4:55804350-55804369 | None:intergenic | 35.0% | |
| !! | ACATTTTGACACGTGGAAGA+AGG | - | chr1_4:55799709-55799728 | None:intergenic | 40.0% |
| TCCACGTGTCAAAATGTAGT+AGG | + | chr1_4:55799712-55799731 | Msa0171170:five_prime_UTR | 40.0% | |
| CAAAATGTAGTAGGCCATGT+TGG | + | chr1_4:55799721-55799740 | Msa0171170:exon | 40.0% | |
| ! | AAGAAGAGTGTAACCCAACA+TGG | - | chr1_4:55799738-55799757 | None:intergenic | 40.0% |
| CTCTTCTCATCATTGTTAGC+AGG | + | chr1_4:55799788-55799807 | Msa0171170:CDS | 40.0% | |
| CAGATGAATCGAAACGACAA+GGG | - | chr1_4:55799923-55799942 | None:intergenic | 40.0% | |
| AACCAGGCGTTTACTTATGT+TGG | + | chr1_4:55800143-55800162 | Msa0171170:CDS | 40.0% | |
| AACCAACATAAGTAAACGCC+TGG | - | chr1_4:55800148-55800167 | None:intergenic | 40.0% | |
| GTGAGAGTGGAAAGTTTAAC+GGG | + | chr1_4:55800246-55800265 | Msa0171170:CDS | 40.0% | |
| ! | AGTGTGTGGTGGAATGAATT+TGG | + | chr1_4:55800274-55800293 | Msa0171170:CDS | 40.0% |
| AAACTTACAGCCAAAACAGG+TGG | - | chr1_4:55800368-55800387 | None:intergenic | 40.0% | |
| CACTGTGATTTCGTCAAATC+CGG | - | chr1_4:55800431-55800450 | None:intergenic | 40.0% | |
| TCGGTTATGACACTGATATG+TGG | + | chr1_4:55800515-55800534 | Msa0171170:intron | 40.0% | |
| ACCGCGTTATGATCAATACA+AGG | + | chr1_4:55800743-55800762 | Msa0171170:CDS | 40.0% | |
| TTCTTTCACTGCTACAAGAG+AGG | + | chr1_4:55800928-55800947 | Msa0171170:CDS | 40.0% | |
| !! | TCACCCACTTTTCCTTGAAA+AGG | + | chr1_4:55800972-55800991 | Msa0171170:CDS | 40.0% |
| ! | TTGGAATATGAAAGGTGTGG+GGG | + | chr1_4:55801102-55801121 | Msa0171170:intron | 40.0% |
| AAGACCGAGTCAAAACTCTA+TGG | + | chr1_4:55801125-55801144 | Msa0171170:CDS | 40.0% | |
| !!! | AGGACCATAGAGTTTTGACT+CGG | - | chr1_4:55801132-55801151 | None:intergenic | 40.0% |
| !!! | GTATTTTGGTTCCACTTTGG+AGG | + | chr1_4:55801257-55801276 | Msa0171170:intron | 40.0% |
| TCAGTTTGAATCCTCCAAAG+TGG | - | chr1_4:55801271-55801290 | None:intergenic | 40.0% | |
| !! | GAGCTTTGAGTTTGGTTATG+CGG | - | chr1_4:55801503-55801522 | None:intergenic | 40.0% |
| ! | GTGATAGTGATTCAGATGAC+AGG | - | chr1_4:55801602-55801621 | None:intergenic | 40.0% |
| !!! | ACTTTTTTATGTCTTCCCGC+AGG | + | chr1_4:55802026-55802045 | Msa0171170:intron | 40.0% |
| TAGTCTTCGTTGCCAATGAT+TGG | + | chr1_4:55802057-55802076 | Msa0171170:CDS | 40.0% | |
| TATTCATAACATCGCCTACC+AGG | + | chr1_4:55802237-55802256 | Msa0171170:CDS | 40.0% | |
| ATTCATAACATCGCCTACCA+GGG | + | chr1_4:55802238-55802257 | Msa0171170:CDS | 40.0% | |
| !! | AAAACATGCACGGTTGGTAA+TGG | - | chr1_4:55802405-55802424 | None:intergenic | 40.0% |
| AGGTATACTACACCTGTGAA+GGG | + | chr1_4:55802442-55802461 | Msa0171170:intron | 40.0% | |
| ! | TTGATTTTCCTTCCCTTCAC+AGG | - | chr1_4:55802457-55802476 | None:intergenic | 40.0% |
| TGTAAGTCCACATTATGCCA+AGG | + | chr1_4:55802519-55802538 | Msa0171170:CDS | 40.0% | |
| ACAAGTTCCTTGGCATAATG+TGG | - | chr1_4:55802529-55802548 | None:intergenic | 40.0% | |
| ! | TATGCCAAGGAACTTGTTTC+CGG | + | chr1_4:55802532-55802551 | Msa0171170:CDS | 40.0% |
| ATTCGTTCAACTGGTATCAC+TGG | + | chr1_4:55802586-55802605 | Msa0171170:CDS | 40.0% | |
| TAGCACCTTCCTGTTTAATG+TGG | + | chr1_4:55802693-55802712 | Msa0171170:intron | 40.0% | |
| GGAATCCACATTAAACAGGA+AGG | - | chr1_4:55802701-55802720 | None:intergenic | 40.0% | |
| TGTGGATTCCTCATTTGACA+TGG | + | chr1_4:55802711-55802730 | Msa0171170:intron | 40.0% | |
| TCAATGGTCCATGTCAAATG+AGG | - | chr1_4:55802722-55802741 | None:intergenic | 40.0% | |
| TTGATGAGCATGGGTTTCAA+TGG | - | chr1_4:55802738-55802757 | None:intergenic | 40.0% | |
| AAAGGGATACTCTTGTCAAC+AGG | - | chr1_4:55802830-55802849 | None:intergenic | 40.0% | |
| !! | GACAAGAGTATCCCTTTGAT+AGG | + | chr1_4:55802833-55802852 | Msa0171170:CDS | 40.0% |
| CTGCCAATGAATCCTATCAA+AGG | - | chr1_4:55802848-55802867 | None:intergenic | 40.0% | |
| CTTTGATAGGATTCATTGGC+AGG | + | chr1_4:55802846-55802865 | Msa0171170:CDS | 40.0% | |
| ! | CTTCTCCATGATCTTTTTGC+CGG | - | chr1_4:55803044-55803063 | None:intergenic | 40.0% |
| ATCGGGGTAGCAAAATTCAA+TGG | + | chr1_4:55803103-55803122 | Msa0171170:CDS | 40.0% | |
| CACAAGGCTCAAATCTACTT+GGG | - | chr1_4:55803174-55803193 | None:intergenic | 40.0% | |
| TGCAATTGAACTAGACCACA+AGG | - | chr1_4:55803190-55803209 | None:intergenic | 40.0% | |
| CTTGTTGACACTGTGAAAGA+AGG | + | chr1_4:55803506-55803525 | Msa0171170:CDS | 40.0% | |
| ACTGTGAAAGAAGGCTATAC+AGG | + | chr1_4:55803515-55803534 | Msa0171170:CDS | 40.0% | |
| AACGTGGAGGTAAGAAGATA+TGG | + | chr1_4:55803557-55803576 | Msa0171170:intron | 40.0% | |
| ! | CTTGGGTACCATAGGTTTTA+AGG | - | chr1_4:55803703-55803722 | None:intergenic | 40.0% |
| GATTATCTCTTGCATGGCTT+GGG | - | chr1_4:55803720-55803739 | None:intergenic | 40.0% | |
| ! | GTTCTGGATTATCTCTTGCA+TGG | - | chr1_4:55803726-55803745 | None:intergenic | 40.0% |
| AGAGATAATCCAGAACTGCA+TGG | + | chr1_4:55803730-55803749 | Msa0171170:CDS | 40.0% | |
| GCAGTTCAGCTAATCATCAA+TGG | + | chr1_4:55803880-55803899 | Msa0171170:intron | 40.0% | |
| CAATGGGTGATTTCTAATGC+AGG | + | chr1_4:55803897-55803916 | Msa0171170:intron | 40.0% | |
| GATATCCCTATTGATGCTCA+TGG | - | chr1_4:55804033-55804052 | None:intergenic | 40.0% | |
| GCAGAGTGCAGTAAGATTAT+AGG | + | chr1_4:55804108-55804127 | Msa0171170:three_prime_UTR | 40.0% | |
| GGAACCTAATCATTGTACCT+TGG | + | chr1_4:55804179-55804198 | Msa0171170:three_prime_UTR | 40.0% | |
| GTACCTTGGAACTTAGTTGA+AGG | + | chr1_4:55804193-55804212 | Msa0171170:three_prime_UTR | 40.0% | |
| AGTGAATAAAGGCCTATTCC+AGG | + | chr1_4:55804335-55804354 | Msa0171170:three_prime_UTR | 40.0% | |
| CGTGTAACTTTCAAACAACC+TGG | - | chr1_4:55804356-55804375 | None:intergenic | 40.0% | |
| AAGCATGAGATTAACGCACA+GGG | + | chr1_4:55804377-55804396 | Msa0171170:three_prime_UTR | 40.0% | |
| !! | GCCTACTACATTTTGACACG+TGG | - | chr1_4:55799716-55799735 | None:intergenic | 45.0% |
| GCAGATGAATCGAAACGACA+AGG | - | chr1_4:55799924-55799943 | None:intergenic | 45.0% | |
| AACTATGAGGGGTTCTTCTG+TGG | + | chr1_4:55800049-55800068 | Msa0171170:CDS | 45.0% | |
| ACTATGAGGGGTTCTTCTGT+GGG | + | chr1_4:55800050-55800069 | Msa0171170:CDS | 45.0% | |
| CTCTTCTTCCCTGGAAATTG+AGG | - | chr1_4:55800082-55800101 | None:intergenic | 45.0% | |
| TAGTCTCTACTCTTCTTCCC+TGG | - | chr1_4:55800091-55800110 | None:intergenic | 45.0% | |
| ACGAGTGAGAAAAGTGAGAG+TGG | + | chr1_4:55800233-55800252 | Msa0171170:CDS | 45.0% | |
| AACGGGAAAATAGTGTGTGG+TGG | + | chr1_4:55800263-55800282 | Msa0171170:CDS | 45.0% | |
| ! | GTGTTTGTTGGAGCTGAAGT+TGG | + | chr1_4:55800296-55800315 | Msa0171170:CDS | 45.0% |
| CGTGTTTGTGGACATATGCA+CGG | + | chr1_4:55800589-55800608 | Msa0171170:intron | 45.0% | |
| GCGGTGATACAGTCATAACA+CGG | - | chr1_4:55800728-55800747 | None:intergenic | 45.0% | |
| !! | AGGAGTTGATCGCGTTTTTG+TGG | + | chr1_4:55800948-55800967 | Msa0171170:CDS | 45.0% |
| TTTCTCAGGACCATATGGTG+TGG | + | chr1_4:55801934-55801953 | Msa0171170:intron | 45.0% | |
| AAGAGCAGTGTGCCAATCAT+TGG | - | chr1_4:55802072-55802091 | None:intergenic | 45.0% | |
| GGGGCTTTACAAAAACGCAA+AGG | + | chr1_4:55802127-55802146 | Msa0171170:CDS | 45.0% | |
| GAGAAGAGCGAAGTCTGAAA+AGG | - | chr1_4:55802272-55802291 | None:intergenic | 45.0% | |
| CAGGTATACTACACCTGTGA+AGG | + | chr1_4:55802441-55802460 | Msa0171170:intron | 45.0% | |
| ATACTACACCTGTGAAGGGA+AGG | + | chr1_4:55802446-55802465 | Msa0171170:CDS | 45.0% | |
| ACTTACAGTGAACACTCGGT+CGG | - | chr1_4:55802506-55802525 | None:intergenic | 45.0% | |
| GTGGACTTACAGTGAACACT+CGG | - | chr1_4:55802510-55802529 | None:intergenic | 45.0% | |
| TTCTCCGGAAACAAGTTCCT+TGG | - | chr1_4:55802539-55802558 | None:intergenic | 45.0% | |
| ! | AGAAGACAGAGGTGTGGAAT+TGG | + | chr1_4:55802555-55802574 | Msa0171170:CDS | 45.0% |
| GGTATCACTGGTATCGTGAA+TGG | + | chr1_4:55802598-55802617 | Msa0171170:CDS | 45.0% | |
| ATGGCATGGATAATCGTGAG+TGG | + | chr1_4:55802617-55802636 | Msa0171170:CDS | 45.0% | |
| GAAAGAAGCTCTTCAAGCTG+AGG | + | chr1_4:55802796-55802815 | Msa0171170:CDS | 45.0% | |
| GGAGAAGCAAATTGAACAGC+TGG | + | chr1_4:55803057-55803076 | Msa0171170:CDS | 45.0% | |
| GAAGCAAATTGAACAGCTGG+AGG | + | chr1_4:55803060-55803079 | Msa0171170:CDS | 45.0% | |
| ACATATCCTGGCAAGGCAAT+CGG | + | chr1_4:55803085-55803104 | Msa0171170:CDS | 45.0% | |
| AGCAAAATTCAATGGCCCCT+TGG | + | chr1_4:55803111-55803130 | Msa0171170:CDS | 45.0% | |
| CCACAAGGCTCAAATCTACT+TGG | - | chr1_4:55803175-55803194 | None:intergenic | 45.0% | |
| CCAAGTAGATTTGAGCCTTG+TGG | + | chr1_4:55803172-55803191 | Msa0171170:CDS | 45.0% | |
| CAATTGCATGCCATGCCATA+TGG | + | chr1_4:55803202-55803221 | Msa0171170:CDS | 45.0% | |
| CTTTACCGTTCCATATGGCA+TGG | - | chr1_4:55803215-55803234 | None:intergenic | 45.0% | |
| !! | CCACCAGTTGATGAAACGAT+GGG | - | chr1_4:55803485-55803504 | None:intergenic | 45.0% |
| !! | ACCACCAGTTGATGAAACGA+TGG | - | chr1_4:55803486-55803505 | None:intergenic | 45.0% |
| ACGAGAGCCCTTAAAACCTA+TGG | + | chr1_4:55803692-55803711 | Msa0171170:CDS | 45.0% | |
| GGATTATCTCTTGCATGGCT+TGG | - | chr1_4:55803721-55803740 | None:intergenic | 45.0% | |
| ATCTCCTCTCCATCTATTCC+AGG | - | chr1_4:55803979-55803998 | None:intergenic | 45.0% | |
| TCCACTGGCAAAGGAAAATG+TGG | + | chr1_4:55804002-55804021 | Msa0171170:CDS | 45.0% | |
| CCACTCCATGAGCATCAATA+GGG | + | chr1_4:55804025-55804044 | Msa0171170:exon | 45.0% | |
| !! | AACTACGATTTACCGGCTTG+AGG | - | chr1_4:55804139-55804158 | None:intergenic | 45.0% |
| GGACCTTCAACTAAGTTCCA+AGG | - | chr1_4:55804199-55804218 | None:intergenic | 45.0% | |
| CAAGCATGAGATTAACGCAC+AGG | + | chr1_4:55804376-55804395 | Msa0171170:three_prime_UTR | 45.0% | |
| !!! | AAATAATTTTTTTAAAAGAA+AGG | + | chr1_4:55800544-55800563 | Msa0171170:intron | 5.0% |
| TGTTAGCAGGTACACTCTCC+AGG | + | chr1_4:55799801-55799820 | Msa0171170:CDS | 50.0% | |
| TGATTACTCACCAGTGCTCC+TGG | - | chr1_4:55799822-55799841 | None:intergenic | 50.0% | |
| GGTTGAATCTCAGTGGATCG+TGG | - | chr1_4:55799902-55799921 | None:intergenic | 50.0% | |
| CGACAAGGGTTGAATCTCAG+TGG | - | chr1_4:55799909-55799928 | None:intergenic | 50.0% | |
| GGTGCATGCCTCAATTTCCA+GGG | + | chr1_4:55800071-55800090 | Msa0171170:CDS | 50.0% | |
| AGACGATAAAGCAGCACGTG+CGG | - | chr1_4:55800204-55800223 | None:intergenic | 50.0% | |
| TTGGAGCTGAAGTTGGACCT+TGG | + | chr1_4:55800303-55800322 | Msa0171170:CDS | 50.0% | |
| GTTGGACCTTGGAGTAAGAC+TGG | + | chr1_4:55800314-55800333 | Msa0171170:CDS | 50.0% | |
| AGTCCACCAGTCTTACTCCA+AGG | - | chr1_4:55800323-55800342 | None:intergenic | 50.0% | |
| !! | TGGAGTAAGACTGGTGGACT+TGG | + | chr1_4:55800323-55800342 | Msa0171170:CDS | 50.0% |
| !! | GGTGGACTTGGTGATGTTCT+TGG | + | chr1_4:55800335-55800354 | Msa0171170:CDS | 50.0% |
| !! | GGACTTGGTGATGTTCTTGG+TGG | + | chr1_4:55800338-55800357 | Msa0171170:CDS | 50.0% |
| !!! | TGGTGGACTTCCACCTGTTT+TGG | + | chr1_4:55800355-55800374 | Msa0171170:CDS | 50.0% |
| GGATACTGATGTGTCTGTCG+AGG | + | chr1_4:55800773-55800792 | Msa0171170:CDS | 50.0% | |
| GACTAGAGAGCCACACCATA+TGG | - | chr1_4:55801947-55801966 | None:intergenic | 50.0% | |
| AAGACTACATCTTCGCCTGC+GGG | - | chr1_4:55802044-55802063 | None:intergenic | 50.0% | |
| GAAGACTACATCTTCGCCTG+CGG | - | chr1_4:55802045-55802064 | None:intergenic | 50.0% | |
| ! | AAAGGCATGTCTTCCCTGGT+AGG | - | chr1_4:55802254-55802273 | None:intergenic | 50.0% |
| ! | CTGAAAAGGCATGTCTTCCC+TGG | - | chr1_4:55802258-55802277 | None:intergenic | 50.0% |
| CTTGTTTCCGGAGAAGACAG+AGG | + | chr1_4:55802544-55802563 | Msa0171170:CDS | 50.0% | |
| TTCCACACCTCTGTCTTCTC+CGG | - | chr1_4:55802554-55802573 | None:intergenic | 50.0% | |
| CACTGGTATCGTGAATGGCA+TGG | + | chr1_4:55802603-55802622 | Msa0171170:CDS | 50.0% | |
| GAAGCTCTTCAAGCTGAGGT+TGG | + | chr1_4:55802800-55802819 | Msa0171170:CDS | 50.0% | |
| GGGAACCGGCAAAAAGATCA+TGG | + | chr1_4:55803036-55803055 | Msa0171170:intron | 50.0% | |
| CAGCTGGAGGTAACATATCC+TGG | + | chr1_4:55803073-55803092 | Msa0171170:CDS | 50.0% | |
| GGAGGTAACATATCCTGGCA+AGG | + | chr1_4:55803078-55803097 | Msa0171170:CDS | 50.0% | |
| CATATCCTGGCAAGGCAATC+GGG | + | chr1_4:55803086-55803105 | Msa0171170:CDS | 50.0% | |
| ATATCCTGGCAAGGCAATCG+GGG | + | chr1_4:55803087-55803106 | Msa0171170:CDS | 50.0% | |
| GCATGCCATGCCATATGGAA+CGG | + | chr1_4:55803207-55803226 | Msa0171170:CDS | 50.0% | |
| GTGCCCATCGTTTCATCAAC+TGG | + | chr1_4:55803479-55803498 | Msa0171170:CDS | 50.0% | |
| CCCATCGTTTCATCAACTGG+TGG | + | chr1_4:55803482-55803501 | Msa0171170:CDS | 50.0% | |
| !!! | GGTTTTAAGGGCTCTCGTGA+CGG | - | chr1_4:55803690-55803709 | None:intergenic | 50.0% |
| ! | TTGCATGGCTTGGGTACCAT+AGG | - | chr1_4:55803711-55803730 | None:intergenic | 50.0% |
| AGTCTTGAGCCATGCAGTTC+TGG | - | chr1_4:55803742-55803761 | None:intergenic | 50.0% | |
| ! | GCATGGCTCAAGACTTTTCG+TGG | + | chr1_4:55803747-55803766 | Msa0171170:CDS | 50.0% |
| ! | GGCTCAAGACTTTTCGTGGA+AGG | + | chr1_4:55803751-55803770 | Msa0171170:CDS | 50.0% |
| CAGTGCGTTCTCCCATAGTT+TGG | - | chr1_4:55803929-55803948 | None:intergenic | 50.0% | |
| GGCAACGAACCTGGAATAGA+TGG | + | chr1_4:55803967-55803986 | Msa0171170:CDS | 50.0% | |
| CGAACCTGGAATAGATGGAG+AGG | + | chr1_4:55803972-55803991 | Msa0171170:CDS | 50.0% | |
| ! | GCCACATTTTCCTTTGCCAG+TGG | - | chr1_4:55804006-55804025 | None:intergenic | 50.0% |
| GCCACTCCATGAGCATCAAT+AGG | + | chr1_4:55804024-55804043 | Msa0171170:exon | 50.0% | |
| CCCTATTGATGCTCATGGAG+TGG | - | chr1_4:55804028-55804047 | None:intergenic | 50.0% | |
| TTATAGGCGTAGCCTCAAGC+CGG | + | chr1_4:55804124-55804143 | Msa0171170:three_prime_UTR | 50.0% | |
| GGGTGCATGCCTCAATTTCC+AGG | + | chr1_4:55800070-55800089 | Msa0171170:CDS | 55.0% | |
| CTCTCAACAAGCTGCACGTG+CGG | + | chr1_4:55800174-55800193 | Msa0171170:CDS | 55.0% | |
| GGACCTTGGAGTAAGACTGG+TGG | + | chr1_4:55800317-55800336 | Msa0171170:CDS | 55.0% | |
| CAACTTTCAGGCCGCACTTG+AGG | + | chr1_4:55801877-55801896 | Msa0171170:intron | 55.0% | |
| !! | AACCCTTGGTGCCTCAAGTG+CGG | - | chr1_4:55801891-55801910 | None:intergenic | 55.0% |
| TTCCGGAGAAGACAGAGGTG+TGG | + | chr1_4:55802549-55802568 | Msa0171170:CDS | 55.0% | |
| GGCAGGCTAGAAGAGCAGAA+AGG | + | chr1_4:55802863-55802882 | Msa0171170:CDS | 55.0% | |
| GGCTATACAGGATTCCACGC+TGG | + | chr1_4:55803527-55803546 | Msa0171170:CDS | 55.0% | |
| TGCAGGGACCAGCCAAACTA+TGG | + | chr1_4:55803914-55803933 | Msa0171170:intron | 55.0% | |
| GCAGGGACCAGCCAAACTAT+GGG | + | chr1_4:55803915-55803934 | Msa0171170:intron | 55.0% | |
| GCGTTCTCCCATAGTTTGGC+TGG | - | chr1_4:55803925-55803944 | None:intergenic | 55.0% | |
| TGGAGAGGAGATTGCTCCAC+TGG | + | chr1_4:55803987-55804006 | Msa0171170:CDS | 55.0% | |
| GGAGATTGCTCCACTGGCAA+AGG | + | chr1_4:55803993-55804012 | Msa0171170:CDS | 55.0% | |
| ! | GGTACACTCTCCAGGAGCAC+TGG | + | chr1_4:55799809-55799828 | Msa0171170:CDS | 60.0% |
| GAACGCACTGTTGAGCCTCG+AGG | + | chr1_4:55803939-55803958 | Msa0171170:CDS | 60.0% | |
| ! | AGGCCGCACTTGAGGCACCA+AGG | + | chr1_4:55801885-55801904 | Msa0171170:intron | 65.0% |
| ! | GGCCGCACTTGAGGCACCAA+GGG | + | chr1_4:55801886-55801905 | Msa0171170:intron | 65.0% |
| GCTACCCCGATTGCCTTGCC+AGG | - | chr1_4:55803094-55803113 | None:intergenic | 65.0% | |
| CCACGTTGAACGCTCCAGCG+TGG | - | chr1_4:55803544-55803563 | None:intergenic | 65.0% | |
| ! | CCACGCTGGAGCGTTCAACG+TGG | + | chr1_4:55803541-55803560 | Msa0171170:CDS | 65.0% |
| ! | CGCTGGAGCGTTCAACGTGG+AGG | + | chr1_4:55803544-55803563 | Msa0171170:CDS | 65.0% |
| CTGTTGAGCCTCGAGGTCGC+AGG | + | chr1_4:55803946-55803965 | Msa0171170:CDS | 65.0% | |
| GTTCGTTGCCTGCGACCTCG+AGG | - | chr1_4:55803957-55803976 | None:intergenic | 65.0% | |
| GAGGTCGCAGGCAACGAACC+TGG | + | chr1_4:55803958-55803977 | Msa0171170:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 55799678 | 55804400 | 55799678 | ID=Msa0171170;Name=Msa0171170 |
| chr1_4 | mRNA | 55799678 | 55804400 | 55799678 | ID=Msa0171170-mRNA-1;Parent=Msa0171170;Name=Msa0171170-mRNA-1;_AED=0.10;_eAED=0.10;_QI=59|1|1|1|0.92|0.86|15|326|646 |
| chr1_4 | exon | 55799678 | 55799830 | 55799678 | ID=Msa0171170-mRNA-1:exon:16733;Parent=Msa0171170-mRNA-1 |
| chr1_4 | exon | 55800024 | 55800379 | 55800024 | ID=Msa0171170-mRNA-1:exon:16734;Parent=Msa0171170-mRNA-1 |
| chr1_4 | exon | 55800714 | 55800794 | 55800714 | ID=Msa0171170-mRNA-1:exon:16735;Parent=Msa0171170-mRNA-1 |
| chr1_4 | exon | 55800895 | 55800993 | 55800895 | ID=Msa0171170-mRNA-1:exon:16736;Parent=Msa0171170-mRNA-1 |
| chr1_4 | exon | 55801116 | 55801205 | 55801116 | ID=Msa0171170-mRNA-1:exon:16737;Parent=Msa0171170-mRNA-1 |
| chr1_4 | exon | 55801887 | 55801950 | 55801887 | ID=Msa0171170-mRNA-1:exon:16738;Parent=Msa0171170-mRNA-1 |
| chr1_4 | exon | 55802048 | 55802148 | 55802048 | ID=Msa0171170-mRNA-1:exon:16739;Parent=Msa0171170-mRNA-1 |
| chr1_4 | exon | 55802226 | 55802335 | 55802226 | ID=Msa0171170-mRNA-1:exon:16740;Parent=Msa0171170-mRNA-1 |
| chr1_4 | exon | 55802444 | 55802687 | 55802444 | ID=Msa0171170-mRNA-1:exon:16741;Parent=Msa0171170-mRNA-1 |
| chr1_4 | exon | 55802773 | 55802949 | 55802773 | ID=Msa0171170-mRNA-1:exon:16742;Parent=Msa0171170-mRNA-1 |
| chr1_4 | exon | 55803037 | 55803228 | 55803037 | ID=Msa0171170-mRNA-1:exon:16743;Parent=Msa0171170-mRNA-1 |
| chr1_4 | exon | 55803479 | 55803565 | 55803479 | ID=Msa0171170-mRNA-1:exon:16744;Parent=Msa0171170-mRNA-1 |
| chr1_4 | exon | 55803644 | 55803772 | 55803644 | ID=Msa0171170-mRNA-1:exon:16745;Parent=Msa0171170-mRNA-1 |
| chr1_4 | exon | 55803919 | 55804246 | 55803919 | ID=Msa0171170-mRNA-1:exon:16746;Parent=Msa0171170-mRNA-1 |
| chr1_4 | exon | 55804286 | 55804400 | 55804286 | ID=Msa0171170-mRNA-1:exon:16747;Parent=Msa0171170-mRNA-1 |
| chr1_4 | five_prime_UTR | 55799678 | 55799736 | 55799678 | ID=Msa0171170-mRNA-1:five_prime_utr;Parent=Msa0171170-mRNA-1 |
| chr1_4 | CDS | 55799737 | 55799830 | 55799737 | ID=Msa0171170-mRNA-1:cds;Parent=Msa0171170-mRNA-1 |
| chr1_4 | CDS | 55800024 | 55800379 | 55800024 | ID=Msa0171170-mRNA-1:cds;Parent=Msa0171170-mRNA-1 |
| chr1_4 | CDS | 55800714 | 55800794 | 55800714 | ID=Msa0171170-mRNA-1:cds;Parent=Msa0171170-mRNA-1 |
| chr1_4 | CDS | 55800895 | 55800993 | 55800895 | ID=Msa0171170-mRNA-1:cds;Parent=Msa0171170-mRNA-1 |
| chr1_4 | CDS | 55801116 | 55801205 | 55801116 | ID=Msa0171170-mRNA-1:cds;Parent=Msa0171170-mRNA-1 |
| chr1_4 | CDS | 55801887 | 55801950 | 55801887 | ID=Msa0171170-mRNA-1:cds;Parent=Msa0171170-mRNA-1 |
| chr1_4 | CDS | 55802048 | 55802148 | 55802048 | ID=Msa0171170-mRNA-1:cds;Parent=Msa0171170-mRNA-1 |
| chr1_4 | CDS | 55802226 | 55802335 | 55802226 | ID=Msa0171170-mRNA-1:cds;Parent=Msa0171170-mRNA-1 |
| chr1_4 | CDS | 55802444 | 55802687 | 55802444 | ID=Msa0171170-mRNA-1:cds;Parent=Msa0171170-mRNA-1 |
| chr1_4 | CDS | 55802773 | 55802949 | 55802773 | ID=Msa0171170-mRNA-1:cds;Parent=Msa0171170-mRNA-1 |
| chr1_4 | CDS | 55803037 | 55803228 | 55803037 | ID=Msa0171170-mRNA-1:cds;Parent=Msa0171170-mRNA-1 |
| chr1_4 | CDS | 55803479 | 55803565 | 55803479 | ID=Msa0171170-mRNA-1:cds;Parent=Msa0171170-mRNA-1 |
| chr1_4 | CDS | 55803644 | 55803772 | 55803644 | ID=Msa0171170-mRNA-1:cds;Parent=Msa0171170-mRNA-1 |
| chr1_4 | CDS | 55803919 | 55804035 | 55803919 | ID=Msa0171170-mRNA-1:cds;Parent=Msa0171170-mRNA-1 |
| chr1_4 | three_prime_UTR | 55804036 | 55804246 | 55804036 | ID=Msa0171170-mRNA-1:three_prime_utr;Parent=Msa0171170-mRNA-1 |
| chr1_4 | three_prime_UTR | 55804286 | 55804400 | 55804286 | ID=Msa0171170-mRNA-1:three_prime_utr;Parent=Msa0171170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
