Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0322560 | KEH37091.1 | 94.737 | 380 | 20 | 0 | 1 | 380 | 1 | 380 | 0.0 | 694 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0106620 | Msa0322560 | 0.805798 | 1.121723e-49 | -8.615850e-47 |
| Msa0192480 | Msa0322560 | 0.803941 | 2.740733e-49 | -8.615850e-47 |
| Msa0223230 | Msa0322560 | 0.833065 | 6.605551e-56 | -8.615850e-47 |
| Msa0241630 | Msa0322560 | 0.980955 | 1.985660e-151 | -8.615850e-47 |
| Msa0274980 | Msa0322560 | 0.817102 | 3.924391e-52 | -8.615850e-47 |
| Msa0279710 | Msa0322560 | 0.905154 | 5.792519e-80 | -8.615850e-47 |
| Msa0315690 | Msa0322560 | 0.812718 | 3.681839e-51 | -8.615850e-47 |
| Msa0322560 | Msa0378970 | 0.805373 | 1.377268e-49 | -8.615850e-47 |
| Msa0322560 | Msa0428580 | 0.802081 | 6.644920e-49 | -8.615850e-47 |
| Msa0322560 | Msa0474940 | 0.811702 | 6.133946e-51 | -8.615850e-47 |
| Msa0322560 | Msa1145810 | 0.822402 | 2.414287e-53 | -8.615850e-47 |
| Msa0322560 | Msa1219000 | 0.815540 | 8.774829e-52 | -8.615850e-47 |
| Msa0322560 | Msa1332760 | 0.822302 | 2.547592e-53 | -8.615850e-47 |
| Msa0322560 | Msa1440310 | 0.802554 | 5.310798e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0322560 | MtrunA17_Chr2g0293221 | 94.474 | 380 | 20 | 1 | 1 | 380 | 1 | 379 | 0.0 | 687 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0322560 | AT1G19980.1 | 33.690 | 374 | 192 | 9 | 14 | 377 | 9 | 336 | 1.64e-55 | 186 |
Find 74 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATGTGCAACGATTTAAAA+AGG | 0.174149 | 2_4:+25511495 | None:intergenic |
| GTCTCTGTGGTGGGAATAAT+TGG | 0.175468 | 2_4:+25510667 | None:intergenic |
| GTGGAATCAATTTAATAAAA+TGG | 0.179907 | 2_4:-25511767 | Msa0322560:CDS |
| CAAAACTAAAGTCATCTTTA+AGG | 0.195780 | 2_4:-25510612 | Msa0322560:CDS |
| TACCCTGCTCAGTTCATCTT+TGG | 0.230573 | 2_4:+25511864 | None:intergenic |
| TTCTGATATTAAACGTTATA+AGG | 0.239982 | 2_4:-25513275 | Msa0322560:CDS |
| CTTAAAGATGACTTTAGTTT+TGG | 0.240955 | 2_4:+25510613 | None:intergenic |
| AAATTTCAACGGTCGACTTT+TGG | 0.269310 | 2_4:+25513559 | None:intergenic |
| TCTACGGCGTTTGAAGGTTT+TGG | 0.295363 | 2_4:+25513439 | None:intergenic |
| CAAACTATTCTCTAGCTAAA+AGG | 0.301161 | 2_4:+25510270 | None:intergenic |
| AGAAAGTAAAGTAGCTGATA+TGG | 0.308879 | 2_4:-25511608 | Msa0322560:CDS |
| GCAGTCTGAAAATATTAAAA+AGG | 0.342062 | 2_4:-25511650 | Msa0322560:CDS |
| GTCAGGACTCTCAACGGAAT+TGG | 0.342907 | 2_4:-25511554 | Msa0322560:CDS |
| ACTGTTCTCTTCCAACTTCA+AGG | 0.343289 | 2_4:-25510638 | Msa0322560:CDS |
| AATCTGTAGAGCGTGGAAAT+TGG | 0.346900 | 2_4:-25513417 | Msa0322560:CDS |
| GGTTCAGATGATGAAGAATC+AGG | 0.362544 | 2_4:-25513374 | Msa0322560:CDS |
| GTGAGCTTTCTGTTTGGAAT+AGG | 0.362590 | 2_4:-25510361 | Msa0322560:three_prime_UTR |
| AGTAGATATTATTGTGTGTT+TGG | 0.367439 | 2_4:-25510546 | Msa0322560:three_prime_UTR |
| AAAACATACTTCTCCATTCA+AGG | 0.368522 | 2_4:+25512069 | None:intergenic |
| ATCTGTAGAGCGTGGAAATT+GGG | 0.376472 | 2_4:-25513416 | Msa0322560:CDS |
| AATACAAGACTGAGTGTGTT+TGG | 0.381842 | 2_4:+25510428 | None:intergenic |
| AGTTCATCTTTGGTTTCATC+AGG | 0.393750 | 2_4:+25511874 | None:intergenic |
| AAGTTGGAAGAGAACAGTTT+GGG | 0.411264 | 2_4:+25510643 | None:intergenic |
| AGAGAGTACAAAGGATGATT+TGG | 0.418152 | 2_4:-25512131 | Msa0322560:CDS |
| GAAGTTGGAAGAGAACAGTT+TGG | 0.431216 | 2_4:+25510642 | None:intergenic |
| CTCTTGCCAGTATCCTTCAA+TGG | 0.432868 | 2_4:+25511964 | None:intergenic |
| CGCATCGTGTGATGCAGAAT+AGG | 0.438445 | 2_4:+25513475 | None:intergenic |
| TAAACAAGAAGAAGTAGAAA+AGG | 0.440876 | 2_4:-25511716 | Msa0322560:CDS |
| GGAACGCCATTGAAGGATAC+TGG | 0.442386 | 2_4:-25511970 | Msa0322560:CDS |
| TATCCTTCAATGGCGTTCCT+TGG | 0.442878 | 2_4:+25511974 | None:intergenic |
| ATCCACAAATTTCTCAGAAA+AGG | 0.443545 | 2_4:-25511371 | Msa0322560:intron |
| CTGGAAAAGTTGAGAGTAGC+AGG | 0.443901 | 2_4:-25511459 | Msa0322560:CDS |
| ACAGATTCTACGGCGTTTGA+AGG | 0.453164 | 2_4:+25513433 | None:intergenic |
| AGCTAAGGCTGATTTGATGA+TGG | 0.458362 | 2_4:-25513098 | Msa0322560:CDS |
| TGATTAGTGAGCTTTCTGTT+TGG | 0.467706 | 2_4:-25510367 | Msa0322560:three_prime_UTR |
| TTCTGAGAAATTTGTGGATG+TGG | 0.488850 | 2_4:+25511375 | None:intergenic |
| TATTGTGTGTTTGGAACCAT+CGG | 0.490823 | 2_4:-25510537 | Msa0322560:three_prime_UTR |
| TGATGTTTGAAGAGAAGAAA+CGG | 0.503982 | 2_4:-25513132 | Msa0322560:CDS |
| CTTCTTCTTCCCACTACTTG+AGG | 0.508521 | 2_4:+25511930 | None:intergenic |
| AAACCAAAGATGAACTGAGC+AGG | 0.509542 | 2_4:-25511867 | Msa0322560:CDS |
| TCTCTGTGGTGGGAATAATT+GGG | 0.509585 | 2_4:+25510668 | None:intergenic |
| AAGAAAGGAACCTCAAGTAG+TGG | 0.509613 | 2_4:-25511940 | Msa0322560:CDS |
| GAGTACAAAGGATGATTTGG+AGG | 0.515610 | 2_4:-25512128 | Msa0322560:CDS |
| TCTTGTATTTGTTTATTGCA+TGG | 0.516464 | 2_4:-25510414 | Msa0322560:three_prime_UTR |
| AGATTAAACAAGCAAATGTC+AGG | 0.517629 | 2_4:-25511571 | Msa0322560:CDS |
| GGACCAAGGAACGCCATTGA+AGG | 0.522380 | 2_4:-25511977 | Msa0322560:CDS |
| AAAAGAAGCTTGAAGAGGAA+AGG | 0.524428 | 2_4:-25510694 | Msa0322560:CDS |
| TACATAATTCAGCTCAAAAG+TGG | 0.525721 | 2_4:+25510302 | None:intergenic |
| AAACATACTTGTTTCTAGCA+TGG | 0.526753 | 2_4:-25511680 | Msa0322560:CDS |
| GATGTGGAAGCATGTTCATC+AGG | 0.527344 | 2_4:+25511391 | None:intergenic |
| GCTAAGGCTGATTTGATGAT+GGG | 0.535120 | 2_4:-25513097 | Msa0322560:CDS |
| TCCACGCTCTACAGATTCTA+CGG | 0.536952 | 2_4:+25513423 | None:intergenic |
| GATACTGGCAAGAGGAAGAA+AGG | 0.541904 | 2_4:-25511955 | Msa0322560:CDS |
| ACGGTTGCTTGAAGAAGCTA+AGG | 0.550968 | 2_4:-25513113 | Msa0322560:CDS |
| AAAATTGCAGAATCAACGCT+GGG | 0.563347 | 2_4:-25513299 | Msa0322560:CDS |
| TAAAATTGCAGAATCAACGC+TGG | 0.563506 | 2_4:-25513300 | Msa0322560:CDS |
| TTGAGAAAGGTAATCAAACC+CGG | 0.569015 | 2_4:+25512096 | None:intergenic |
| AGAAAGGAACCTCAAGTAGT+GGG | 0.601571 | 2_4:-25511939 | Msa0322560:CDS |
| AAGAAGAGCTAAAATTTCAA+CGG | 0.613560 | 2_4:+25513548 | None:intergenic |
| AGGAGAAAAGAAGCTTGAAG+AGG | 0.617154 | 2_4:-25510699 | Msa0322560:CDS |
| AGTTTGGGAGTCTCTGTGGT+GGG | 0.621503 | 2_4:+25510658 | None:intergenic |
| TTATAAGGATCAAATTACTC+AGG | 0.623873 | 2_4:-25513260 | Msa0322560:intron |
| AACCAAAGATGAACTGAGCA+GGG | 0.624655 | 2_4:-25511866 | Msa0322560:CDS |
| GCCGTAGAATCTGTAGAGCG+TGG | 0.627881 | 2_4:-25513424 | Msa0322560:CDS |
| GCAAATGTCAGGACTCTCAA+CGG | 0.628067 | 2_4:-25511560 | Msa0322560:CDS |
| CAGTTTGGGAGTCTCTGTGG+TGG | 0.629969 | 2_4:+25510657 | None:intergenic |
| GGCCACACCGTGAAAACCGA+TGG | 0.632545 | 2_4:+25510521 | None:intergenic |
| ACATCGAGTACTAGTGACTC+TGG | 0.637582 | 2_4:-25511478 | Msa0322560:CDS |
| CATACTTGTTTCTAGCATGG+AGG | 0.643179 | 2_4:-25511677 | Msa0322560:CDS |
| GAACAGTTTGGGAGTCTCTG+TGG | 0.665247 | 2_4:+25510654 | None:intergenic |
| TTTGACTGCAGAGAGTACAA+AGG | 0.671398 | 2_4:-25512140 | Msa0322560:intron |
| CATTGAAGGATACTGGCAAG+AGG | 0.671920 | 2_4:-25511963 | Msa0322560:CDS |
| GTCACTTTATAACAGGACCA+AGG | 0.685155 | 2_4:-25511991 | Msa0322560:intron |
| GTTAAAGAGAGCTTAACGTG+CGG | 0.748635 | 2_4:+25510457 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAAAGGTTTTTTTAA+TGG | - | chr2_4:25510648-25510667 | Msa0322560:CDS | 10.0% |
| !!! | AAAAAAAAGGTTTTTTTAAT+GGG | - | chr2_4:25510649-25510668 | Msa0322560:CDS | 10.0% |
| !!! | TTTCATGTTTTTTTATTAAT+TGG | - | chr2_4:25510819-25510838 | Msa0322560:intron | 10.0% |
| !!! | TATTCAACAATTTCAATTTT+AGG | - | chr2_4:25510602-25510621 | Msa0322560:exon | 15.0% |
| !!! | ATTCAACAATTTCAATTTTA+GGG | - | chr2_4:25510603-25510622 | Msa0322560:CDS | 15.0% |
| !!! | TTAAGTTGTTGAAAAAAAAA+AGG | - | chr2_4:25510636-25510655 | Msa0322560:CDS | 15.0% |
| !! | TAAAAAAACATGAAAGAAAA+AGG | + | chr2_4:25510814-25510833 | None:intergenic | 15.0% |
| !!! | ATGTTTTTTTATTAATTGGT+TGG | - | chr2_4:25510823-25510842 | Msa0322560:intron | 15.0% |
| !! | GAATATTTGTATAGAAATTT+AGG | - | chr2_4:25510997-25511016 | Msa0322560:intron | 15.0% |
| !!! | TGGATTGTTTTATAAAATAA+TGG | - | chr2_4:25511086-25511105 | Msa0322560:intron | 15.0% |
| !! | AATAGAAATGACTAATAAAA+AGG | + | chr2_4:25511809-25511828 | None:intergenic | 15.0% |
| !! | TTCTGATATTAAACGTTATA+AGG | - | chr2_4:25510562-25510581 | Msa0322560:three_prime_UTR | 20.0% |
| !!! | AGAATCTTCTATTTTGAAAT+GGG | - | chr2_4:25510775-25510794 | Msa0322560:intron | 20.0% |
| !!! | TAATTGGTTGGTATTTAAAT+AGG | - | chr2_4:25510835-25510854 | Msa0322560:intron | 20.0% |
| !! | ACTGTTAGTCAAATTATTAT+CGG | - | chr2_4:25511229-25511248 | Msa0322560:intron | 20.0% |
| !! | AAAAACACTAATACTTTGTT+TGG | + | chr2_4:25511603-25511622 | None:intergenic | 20.0% |
| !!! | ATTGTTATAATTAGCTTTGT+TGG | - | chr2_4:25511656-25511675 | Msa0322560:CDS | 20.0% |
| !!! | TATGTTTTCTGATATTTATC+AGG | - | chr2_4:25511783-25511802 | Msa0322560:CDS | 20.0% |
| !! | GTGGAATCAATTTAATAAAA+TGG | - | chr2_4:25512070-25512089 | Msa0322560:intron | 20.0% |
| !! | ATCATTTAATACATACAGTA+CGG | + | chr2_4:25512529-25512548 | None:intergenic | 20.0% |
| ! | AAGAAGAGCTAAAATTTCAA+CGG | + | chr2_4:25510292-25510311 | None:intergenic | 25.0% |
| ! | TTATAAGGATCAAATTACTC+AGG | - | chr2_4:25510577-25510596 | Msa0322560:three_prime_UTR | 25.0% |
| !!! | GAGAATCTTCTATTTTGAAA+TGG | - | chr2_4:25510774-25510793 | Msa0322560:intron | 25.0% |
| !!! | TTCTATTTTGAAATGGGTTT+TGG | - | chr2_4:25510781-25510800 | Msa0322560:intron | 25.0% |
| !!! | TCTATTTTGAAATGGGTTTT+GGG | - | chr2_4:25510782-25510801 | Msa0322560:intron | 25.0% |
| ! | TTCTATAACCCAAAATCAAA+GGG | + | chr2_4:25510878-25510897 | None:intergenic | 25.0% |
| ! | TTTCTATAACCCAAAATCAA+AGG | + | chr2_4:25510879-25510898 | None:intergenic | 25.0% |
| ! | TTTGATGTTATGTTCCTTAT+CGG | - | chr2_4:25510971-25510990 | Msa0322560:intron | 25.0% |
| ! | TACAAATATTCAAACCGATA+AGG | + | chr2_4:25510988-25511007 | None:intergenic | 25.0% |
| ! | AAGGTAAGTCTTAATGTAAT+TGG | + | chr2_4:25511164-25511183 | None:intergenic | 25.0% |
| ! | TAATTTCACTTTCTAAGCTA+AGG | + | chr2_4:25511295-25511314 | None:intergenic | 25.0% |
| ! | TGAAATTATCCTATCAATCT+TGG | - | chr2_4:25511307-25511326 | Msa0322560:intron | 25.0% |
| ! | GAAATACCTTATTGTTTGAT+CGG | - | chr2_4:25511452-25511471 | Msa0322560:CDS | 25.0% |
| ! | TAAAAACCGATCAAACAATA+AGG | + | chr2_4:25511461-25511480 | None:intergenic | 25.0% |
| ! | CAAAATTAGTAAATTCAACG+TGG | - | chr2_4:25511575-25511594 | Msa0322560:CDS | 25.0% |
| ! | TAAACAAGAAGAAGTAGAAA+AGG | - | chr2_4:25512121-25512140 | Msa0322560:CDS | 25.0% |
| ! | GCAGTCTGAAAATATTAAAA+AGG | - | chr2_4:25512187-25512206 | Msa0322560:intron | 25.0% |
| ! | GATTTAAAAAGGGTTTAACT+TGG | + | chr2_4:25512334-25512353 | None:intergenic | 25.0% |
| ! | TATTAAATGATTCTCTTCTC+AGG | - | chr2_4:25512538-25512557 | Msa0322560:intron | 25.0% |
| ! | TATAATGCAACTCACTAATT+CGG | + | chr2_4:25512973-25512992 | None:intergenic | 25.0% |
| !!! | CTTAAAGATGACTTTAGTTT+TGG | + | chr2_4:25513227-25513246 | None:intergenic | 25.0% |
| ! | CAAAACTAAAGTCATCTTTA+AGG | - | chr2_4:25513225-25513244 | Msa0322560:intron | 25.0% |
| ! | AGTAGATATTATTGTGTGTT+TGG | - | chr2_4:25513291-25513310 | Msa0322560:CDS | 25.0% |
| ! | TCTTGTATTTGTTTATTGCA+TGG | - | chr2_4:25513423-25513442 | Msa0322560:CDS | 25.0% |
| GGAAAAAATATTCAGCACTT+TGG | - | chr2_4:25510442-25510461 | Msa0322560:three_prime_UTR | 30.0% | |
| TGATGTTTGAAGAGAAGAAA+CGG | - | chr2_4:25510705-25510724 | Msa0322560:intron | 30.0% | |
| ! | TGGTTGGTATTTAAATAGGT+TGG | - | chr2_4:25510839-25510858 | Msa0322560:intron | 30.0% |
| ! | GGTTGGTATTTAAATAGGTT+GGG | - | chr2_4:25510840-25510859 | Msa0322560:intron | 30.0% |
| !! | TAAATAGGTTGGGTTTTTGA+TGG | - | chr2_4:25510850-25510869 | Msa0322560:intron | 30.0% |
| !! | AAATAGGTTGGGTTTTTGAT+GGG | - | chr2_4:25510851-25510870 | Msa0322560:intron | 30.0% |
| !!! | TGTCTTGTTGTTTTTGTTCT+TGG | - | chr2_4:25510934-25510953 | Msa0322560:intron | 30.0% |
| AATCCAACAAGAATAACAAC+AGG | + | chr2_4:25511072-25511091 | None:intergenic | 30.0% | |
| TTATCCTATCAATCTTGGAA+TGG | - | chr2_4:25511312-25511331 | Msa0322560:intron | 30.0% | |
| TAACTAAAAACACACGTTCT+AGG | + | chr2_4:25511519-25511538 | None:intergenic | 30.0% | |
| TCTCAATATCACTTCCAAAT+TGG | - | chr2_4:25511542-25511561 | Msa0322560:CDS | 30.0% | |
| !! | AGCTTTTAAACTATTTGCTG+AGG | - | chr2_4:25511629-25511648 | Msa0322560:CDS | 30.0% |
| !! | CATTCAAGGATTTTTGAGAA+AGG | + | chr2_4:25511757-25511776 | None:intergenic | 30.0% |
| CTTTCTCAAAAATCCTTGAA+TGG | - | chr2_4:25511755-25511774 | Msa0322560:CDS | 30.0% | |
| AAAACATACTTCTCCATTCA+AGG | + | chr2_4:25511771-25511790 | None:intergenic | 30.0% | |
| ! | CTTTTCTTTCTCTGCAATTT+TGG | + | chr2_4:25511940-25511959 | None:intergenic | 30.0% |
| ! | TGCAAGAAAAGAATTTTGTG+TGG | - | chr2_4:25512051-25512070 | Msa0322560:intron | 30.0% |
| !! | AAACATACTTGTTTCTAGCA+TGG | - | chr2_4:25512157-25512176 | Msa0322560:intron | 30.0% |
| AGAAAGTAAAGTAGCTGATA+TGG | - | chr2_4:25512229-25512248 | Msa0322560:intron | 30.0% | |
| AGATTAAACAAGCAAATGTC+AGG | - | chr2_4:25512266-25512285 | Msa0322560:intron | 30.0% | |
| GATGTGCAACGATTTAAAAA+GGG | + | chr2_4:25512344-25512363 | None:intergenic | 30.0% | |
| ATCCACAAATTTCTCAGAAA+AGG | - | chr2_4:25512466-25512485 | Msa0322560:intron | 30.0% | |
| !! | TACCTTTTCTGAGAAATTTG+TGG | + | chr2_4:25512471-25512490 | None:intergenic | 30.0% |
| TAAGCAGATAGCAAAAGAAT+GGG | + | chr2_4:25512502-25512521 | None:intergenic | 30.0% | |
| ATAAGCAGATAGCAAAAGAA+TGG | + | chr2_4:25512503-25512522 | None:intergenic | 30.0% | |
| TGACTATAACTATATCAGCT+TGG | + | chr2_4:25512937-25512956 | None:intergenic | 30.0% | |
| ATAATGCAACTCACTAATTC+GGG | + | chr2_4:25512972-25512991 | None:intergenic | 30.0% | |
| CAACAATAACATTCATGGAA+GGG | + | chr2_4:25513115-25513134 | None:intergenic | 30.0% | |
| ACAACAATAACATTCATGGA+AGG | + | chr2_4:25513116-25513135 | None:intergenic | 30.0% | |
| TACATAATTCAGCTCAAAAG+TGG | + | chr2_4:25513538-25513557 | None:intergenic | 30.0% | |
| TAAAATTGCAGAATCAACGC+TGG | - | chr2_4:25510537-25510556 | Msa0322560:three_prime_UTR | 35.0% | |
| AAAATTGCAGAATCAACGCT+GGG | - | chr2_4:25510538-25510557 | Msa0322560:three_prime_UTR | 35.0% | |
| ATTATGAAGCAGCAGAAAAC+CGG | - | chr2_4:25511025-25511044 | Msa0322560:intron | 35.0% | |
| TATGAACAATACATTCCGAC+CGG | + | chr2_4:25511047-25511066 | None:intergenic | 35.0% | |
| ! | AGTCCTGTTGTTATTCTTGT+TGG | - | chr2_4:25511066-25511085 | Msa0322560:intron | 35.0% |
| GTACCTACACTTATGATAGA+AGG | - | chr2_4:25511191-25511210 | Msa0322560:intron | 35.0% | |
| ACACCTTCTATCATAAGTGT+AGG | + | chr2_4:25511197-25511216 | None:intergenic | 35.0% | |
| AACCACATAACTGTAAGAGT+TGG | - | chr2_4:25511419-25511438 | Msa0322560:CDS | 35.0% | |
| ! | AATAAGGTATTTCACCACCA+AGG | + | chr2_4:25511445-25511464 | None:intergenic | 35.0% |
| TATCACTTCCAAATTGGCAT+TGG | - | chr2_4:25511548-25511567 | Msa0322560:CDS | 35.0% | |
| ATCACTTCCAAATTGGCATT+GGG | - | chr2_4:25511549-25511568 | Msa0322560:CDS | 35.0% | |
| ! | AGAGAGTACAAAGGATGATT+TGG | - | chr2_4:25511706-25511725 | Msa0322560:CDS | 35.0% |
| !!! | GATTTGGAGGATTTTAAAGC+CGG | - | chr2_4:25511722-25511741 | Msa0322560:CDS | 35.0% |
| !!! | ATTTGGAGGATTTTAAAGCC+GGG | - | chr2_4:25511723-25511742 | Msa0322560:CDS | 35.0% |
| TTGAGAAAGGTAATCAAACC+CGG | + | chr2_4:25511744-25511763 | None:intergenic | 35.0% | |
| ! | CTGAGAAGTCACTTTATAAC+AGG | - | chr2_4:25511839-25511858 | Msa0322560:CDS | 35.0% |
| ! | AGTTCATCTTTGGTTTCATC+AGG | + | chr2_4:25511966-25511985 | None:intergenic | 35.0% |
| CGATGTGCAACGATTTAAAA+AGG | + | chr2_4:25512345-25512364 | None:intergenic | 35.0% | |
| !!! | CGTGTCTCTTTCTTTTTTCA+AGG | + | chr2_4:25512420-25512439 | None:intergenic | 35.0% |
| ! | TTCTGAGAAATTTGTGGATG+TGG | + | chr2_4:25512465-25512484 | None:intergenic | 35.0% |
| TTCGTTAGACTAAACACACA+AGG | + | chr2_4:25512660-25512679 | None:intergenic | 35.0% | |
| TGTTTAGTCTAACGAACACA+GGG | - | chr2_4:25512664-25512683 | Msa0322560:intron | 35.0% | |
| CTGGACAACAATAACATTCA+TGG | + | chr2_4:25513120-25513139 | None:intergenic | 35.0% | |
| CATGAATGTTATTGTTGTCC+AGG | - | chr2_4:25513118-25513137 | Msa0322560:CDS | 35.0% | |
| AAAAGAAGCTTGAAGAGGAA+AGG | - | chr2_4:25513143-25513162 | Msa0322560:CDS | 35.0% | |
| AAGTTGGAAGAGAACAGTTT+GGG | + | chr2_4:25513197-25513216 | None:intergenic | 35.0% | |
| !!! | TAGTTTTGGAACCTTGAAGT+TGG | + | chr2_4:25513213-25513232 | None:intergenic | 35.0% |
| ! | TATTGTGTGTTTGGAACCAT+CGG | - | chr2_4:25513300-25513319 | Msa0322560:CDS | 35.0% |
| !! | CTACTAGTTGTAGCTGTTTT+TGG | + | chr2_4:25513349-25513368 | None:intergenic | 35.0% |
| AATACAAGACTGAGTGTGTT+TGG | + | chr2_4:25513412-25513431 | None:intergenic | 35.0% | |
| TGATTAGTGAGCTTTCTGTT+TGG | - | chr2_4:25513470-25513489 | Msa0322560:exon | 35.0% | |
| AATCTGTAGAGCGTGGAAAT+TGG | - | chr2_4:25510420-25510439 | Msa0322560:three_prime_UTR | 40.0% | |
| ATCTGTAGAGCGTGGAAATT+GGG | - | chr2_4:25510421-25510440 | Msa0322560:three_prime_UTR | 40.0% | |
| GGTTCAGATGATGAAGAATC+AGG | - | chr2_4:25510463-25510482 | Msa0322560:three_prime_UTR | 40.0% | |
| !! | AGCTAAGGCTGATTTGATGA+TGG | - | chr2_4:25510739-25510758 | Msa0322560:intron | 40.0% |
| !! | GCTAAGGCTGATTTGATGAT+GGG | - | chr2_4:25510740-25510759 | Msa0322560:intron | 40.0% |
| !! | TTGATGGGTCCCTTTGATTT+TGG | - | chr2_4:25510866-25510885 | Msa0322560:intron | 40.0% |
| !! | TGATGGGTCCCTTTGATTTT+GGG | - | chr2_4:25510867-25510886 | Msa0322560:intron | 40.0% |
| AAGTGTAGGTACTACAGAGA+AGG | + | chr2_4:25511183-25511202 | None:intergenic | 40.0% | |
| ! | CTTATGATAGAAGGTGTGTC+CGG | - | chr2_4:25511200-25511219 | Msa0322560:intron | 40.0% |
| TTTGACTAACAGTGAGACTC+CGG | + | chr2_4:25511222-25511241 | None:intergenic | 40.0% | |
| GTGACCATTCCAAGATTGAT+AGG | + | chr2_4:25511319-25511338 | None:intergenic | 40.0% | |
| TGTTGTTGTAGCACACTTCT+AGG | - | chr2_4:25511372-25511391 | Msa0322560:CDS | 40.0% | |
| ! | ATAACTGTAAGAGTTGGCCT+TGG | - | chr2_4:25511425-25511444 | Msa0322560:CDS | 40.0% |
| CCTACTGTGAAAACAAACAC+TGG | + | chr2_4:25511492-25511511 | None:intergenic | 40.0% | |
| !! | CCAGTGTTTGTTTTCACAGT+AGG | - | chr2_4:25511489-25511508 | Msa0322560:CDS | 40.0% |
| ! | TTTGACTGCAGAGAGTACAA+AGG | - | chr2_4:25511697-25511716 | Msa0322560:CDS | 40.0% |
| ! | GAGTACAAAGGATGATTTGG+AGG | - | chr2_4:25511709-25511728 | Msa0322560:CDS | 40.0% |
| ! | GTCACTTTATAACAGGACCA+AGG | - | chr2_4:25511846-25511865 | Msa0322560:CDS | 40.0% |
| AAGAAAGGAACCTCAAGTAG+TGG | - | chr2_4:25511897-25511916 | Msa0322560:CDS | 40.0% | |
| AGAAAGGAACCTCAAGTAGT+GGG | - | chr2_4:25511898-25511917 | Msa0322560:CDS | 40.0% | |
| AAACCAAAGATGAACTGAGC+AGG | - | chr2_4:25511970-25511989 | Msa0322560:CDS | 40.0% | |
| AACCAAAGATGAACTGAGCA+GGG | - | chr2_4:25511971-25511990 | Msa0322560:CDS | 40.0% | |
| !! | CATACTTGTTTCTAGCATGG+AGG | - | chr2_4:25512160-25512179 | Msa0322560:intron | 40.0% |
| GTGTTTAGTCTAACGAACAC+AGG | - | chr2_4:25512663-25512682 | Msa0322560:intron | 40.0% | |
| ! | AAACATGTGCTTGTTACCTG+TGG | - | chr2_4:25512869-25512888 | Msa0322560:intron | 40.0% |
| ! | AACATGTGCTTGTTACCTGT+GGG | - | chr2_4:25512870-25512889 | Msa0322560:intron | 40.0% |
| AATAGCAGAATTTACCCCAC+AGG | + | chr2_4:25512888-25512907 | None:intergenic | 40.0% | |
| CAACTCACTAATTCGGGAAT+AGG | + | chr2_4:25512966-25512985 | None:intergenic | 40.0% | |
| GTTGCATTATATCGACCATC+TGG | - | chr2_4:25512982-25513001 | Msa0322560:intron | 40.0% | |
| ! | TCTTCAAGCTTCTTTTCTCC+TGG | + | chr2_4:25513139-25513158 | None:intergenic | 40.0% |
| AGGAGAAAAGAAGCTTGAAG+AGG | - | chr2_4:25513138-25513157 | Msa0322560:CDS | 40.0% | |
| ! | TCTCTGTGGTGGGAATAATT+GGG | + | chr2_4:25513172-25513191 | None:intergenic | 40.0% |
| GAAGTTGGAAGAGAACAGTT+TGG | + | chr2_4:25513198-25513217 | None:intergenic | 40.0% | |
| ACTGTTCTCTTCCAACTTCA+AGG | - | chr2_4:25513199-25513218 | Msa0322560:intron | 40.0% | |
| !!! | TTTGGAACCATCGGTTTTCA+CGG | - | chr2_4:25513309-25513328 | Msa0322560:CDS | 40.0% |
| !!! | GTAGCTGTTTTTGGTACGTT+AGG | + | chr2_4:25513340-25513359 | None:intergenic | 40.0% |
| GTTAAAGAGAGCTTAACGTG+CGG | + | chr2_4:25513383-25513402 | None:intergenic | 40.0% | |
| ! | GTGAGCTTTCTGTTTGGAAT+AGG | - | chr2_4:25513476-25513495 | Msa0322560:exon | 40.0% |
| ! | TCTACGGCGTTTGAAGGTTT+TGG | + | chr2_4:25510401-25510420 | None:intergenic | 45.0% |
| ACAGATTCTACGGCGTTTGA+AGG | + | chr2_4:25510407-25510426 | None:intergenic | 45.0% | |
| TCCACGCTCTACAGATTCTA+CGG | + | chr2_4:25510417-25510436 | None:intergenic | 45.0% | |
| ACGGTTGCTTGAAGAAGCTA+AGG | - | chr2_4:25510724-25510743 | Msa0322560:intron | 45.0% | |
| TGTGCTACAACAACAGTCAG+TGG | + | chr2_4:25511367-25511386 | None:intergenic | 45.0% | |
| GGCCAACTCTTACAGTTATG+TGG | + | chr2_4:25511424-25511443 | None:intergenic | 45.0% | |
| TTTGCGTCCCAATGCCAATT+TGG | + | chr2_4:25511559-25511578 | None:intergenic | 45.0% | |
| TATCCTTCAATGGCGTTCCT+TGG | + | chr2_4:25511866-25511885 | None:intergenic | 45.0% | |
| CTCTTGCCAGTATCCTTCAA+TGG | + | chr2_4:25511876-25511895 | None:intergenic | 45.0% | |
| CATTGAAGGATACTGGCAAG+AGG | - | chr2_4:25511874-25511893 | Msa0322560:CDS | 45.0% | |
| GATACTGGCAAGAGGAAGAA+AGG | - | chr2_4:25511882-25511901 | Msa0322560:CDS | 45.0% | |
| CTTCTTCTTCCCACTACTTG+AGG | + | chr2_4:25511910-25511929 | None:intergenic | 45.0% | |
| TACCCTGCTCAGTTCATCTT+TGG | + | chr2_4:25511976-25511995 | None:intergenic | 45.0% | |
| GCAAATGTCAGGACTCTCAA+CGG | - | chr2_4:25512277-25512296 | Msa0322560:intron | 45.0% | |
| ACATCGAGTACTAGTGACTC+TGG | - | chr2_4:25512359-25512378 | Msa0322560:intron | 45.0% | |
| CTGGAAAAGTTGAGAGTAGC+AGG | - | chr2_4:25512378-25512397 | Msa0322560:intron | 45.0% | |
| ! | GATGTGGAAGCATGTTCATC+AGG | + | chr2_4:25512449-25512468 | None:intergenic | 45.0% |
| ! | ACATGTGCTTGTTACCTGTG+GGG | - | chr2_4:25512871-25512890 | Msa0322560:intron | 45.0% |
| ! | GCGTTGAAGCTATTTCCAGA+TGG | + | chr2_4:25513000-25513019 | None:intergenic | 45.0% |
| ! | GTCTCTGTGGTGGGAATAAT+TGG | + | chr2_4:25513173-25513192 | None:intergenic | 45.0% |
| !!! | TTTGTTATTTTAATTTTAAA+TGG | - | chr2_4:25511118-25511137 | Msa0322560:intron | 5.0% |
| CGCATCGTGTGATGCAGAAT+AGG | + | chr2_4:25510365-25510384 | None:intergenic | 50.0% | |
| TGAAGCAGCAGAAAACCGGT+CGG | - | chr2_4:25511029-25511048 | Msa0322560:intron | 50.0% | |
| !! | ACTGTAAGAGTTGGCCTTGG+TGG | - | chr2_4:25511428-25511447 | Msa0322560:CDS | 50.0% |
| GGAACGCCATTGAAGGATAC+TGG | - | chr2_4:25511867-25511886 | Msa0322560:CDS | 50.0% | |
| GTCAGGACTCTCAACGGAAT+TGG | - | chr2_4:25512283-25512302 | Msa0322560:intron | 50.0% | |
| AGTTTGGGAGTCTCTGTGGT+GGG | + | chr2_4:25513182-25513201 | None:intergenic | 50.0% | |
| GAACAGTTTGGGAGTCTCTG+TGG | + | chr2_4:25513186-25513205 | None:intergenic | 50.0% | |
| !!! | AACCATCGGTTTTCACGGTG+TGG | - | chr2_4:25513314-25513333 | Msa0322560:CDS | 50.0% |
| GCCGTAGAATCTGTAGAGCG+TGG | - | chr2_4:25510413-25510432 | Msa0322560:three_prime_UTR | 55.0% | |
| GGACCAAGGAACGCCATTGA+AGG | - | chr2_4:25511860-25511879 | Msa0322560:CDS | 55.0% | |
| CAGTTTGGGAGTCTCTGTGG+TGG | + | chr2_4:25513183-25513202 | None:intergenic | 55.0% | |
| GGCCACACCGTGAAAACCGA+TGG | + | chr2_4:25513319-25513338 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 25510279 | 25513580 | 25510279 | ID=Msa0322560;Name=Msa0322560 |
| chr2_4 | mRNA | 25510279 | 25513580 | 25510279 | ID=Msa0322560-mRNA-1;Parent=Msa0322560;Name=Msa0322560-mRNA-1;_AED=0.04;_eAED=0.04;_QI=101|1|1|1|1|1|5|324|382 |
| chr2_4 | exon | 25510279 | 25510719 | 25510279 | ID=Msa0322560-mRNA-1:exon:9008;Parent=Msa0322560-mRNA-1 |
| chr2_4 | exon | 25511372 | 25511998 | 25511372 | ID=Msa0322560-mRNA-1:exon:9007;Parent=Msa0322560-mRNA-1 |
| chr2_4 | exon | 25512078 | 25512151 | 25512078 | ID=Msa0322560-mRNA-1:exon:9006;Parent=Msa0322560-mRNA-1 |
| chr2_4 | exon | 25513056 | 25513167 | 25513056 | ID=Msa0322560-mRNA-1:exon:9005;Parent=Msa0322560-mRNA-1 |
| chr2_4 | exon | 25513261 | 25513580 | 25513261 | ID=Msa0322560-mRNA-1:exon:9004;Parent=Msa0322560-mRNA-1 |
| chr2_4 | five_prime_UTR | 25513480 | 25513580 | 25513480 | ID=Msa0322560-mRNA-1:five_prime_utr;Parent=Msa0322560-mRNA-1 |
| chr2_4 | CDS | 25513261 | 25513479 | 25513261 | ID=Msa0322560-mRNA-1:cds;Parent=Msa0322560-mRNA-1 |
| chr2_4 | CDS | 25513056 | 25513167 | 25513056 | ID=Msa0322560-mRNA-1:cds;Parent=Msa0322560-mRNA-1 |
| chr2_4 | CDS | 25512078 | 25512151 | 25512078 | ID=Msa0322560-mRNA-1:cds;Parent=Msa0322560-mRNA-1 |
| chr2_4 | CDS | 25511372 | 25511998 | 25511372 | ID=Msa0322560-mRNA-1:cds;Parent=Msa0322560-mRNA-1 |
| chr2_4 | CDS | 25510603 | 25510719 | 25510603 | ID=Msa0322560-mRNA-1:cds;Parent=Msa0322560-mRNA-1 |
| chr2_4 | three_prime_UTR | 25510279 | 25510602 | 25510279 | ID=Msa0322560-mRNA-1:three_prime_utr;Parent=Msa0322560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
