AlfalfaGEDB | Msa0192480

M. sativa cultivar zhongmu-4 / Msa0192480

KEGG: K07466
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0192480	XP_003593631.1	98.684	152	2	0	1	152	1	152	2.52e-105	307

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0192480	sp\|O49453\|Y4844_ARATH	65.152	132	46	0	17	148	17	148	2.51e-58	181

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0192480	G7ISE9	98.684	152	2	0	1	152	1	152	1.20e-105	307

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0012940	Msa0192480	0.841268	5.266982e-58	-8.615850e-47
Msa0017390	Msa0192480	0.807158	5.793979e-50	-8.615850e-47
Msa0028930	Msa0192480	0.812721	3.675962e-51	-8.615850e-47
Msa0031820	Msa0192480	0.812988	3.212822e-51	-8.615850e-47
Msa0032920	Msa0192480	-0.807633	4.594452e-50	-8.615850e-47
Msa0033880	Msa0192480	0.833107	6.448775e-56	-8.615850e-47
Msa0035130	Msa0192480	0.811816	5.794627e-51	-8.615850e-47
Msa0037160	Msa0192480	0.830933	2.221805e-55	-8.615850e-47
Msa0039250	Msa0192480	0.830248	3.267982e-55	-8.615850e-47
Msa0040690	Msa0192480	0.806350	8.586178e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0192480	MtrunA17_Chr2g0282661	98.684	152	2	0	1	152	1	152	2.31e-109	307
Msa0192480	MtrunA17_Chr2g0324821	66.667	144	40	2	12	152	2	140	3.33e-65	195
Msa0192480	MtrunA17_Chr5g0413571	65.217	138	42	2	13	150	4	135	3.93e-60	182
Msa0192480	MtrunA17_Chr8g0365411	54.348	138	24	1	14	151	5	103	3.06e-46	146
Msa0192480	MtrunA17_Chr6g0476691	60.000	105	35	1	47	151	2	99	2.23e-38	126
Msa0192480	MtrunA17_Chr5g0438061	38.462	130	65	2	20	148	103	218	1.42e-20	84.0
Msa0192480	MtrunA17_Chr5g0438041	39.259	135	63	4	20	149	5	125	1.78e-20	81.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0192480	AT2G33845.1	68.382	136	38	1	17	152	52	182	1.95e-64	195
Msa0192480	AT1G23750.1	63.121	141	46	1	11	151	3	137	6.09e-63	189
Msa0192480	AT4G28440.1	65.152	132	46	0	17	148	17	148	2.56e-59	181
Msa0192480	AT1G10590.2	61.940	134	46	3	16	148	7	136	2.22e-56	173
Msa0192480	AT1G10590.1	61.940	134	46	3	16	148	7	136	2.22e-56	173
Msa0192480	AT1G10590.3	61.940	134	46	3	16	148	21	150	3.61e-56	173
Msa0192480	AT1G03810.1	60.902	133	49	1	17	149	14	143	3.20e-54	168
Msa0192480	AT1G23750.2	68.571	105	27	1	47	151	2	100	1.34e-47	149

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Find 37 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCACTTTCACAAAAG+TGG	0.453220	2_1:+8314365	Msa0192480:CDS
AAAGTGGATCAGATGAAACC+AGG	0.663122	2_1:+8314381	Msa0192480:CDS
AAAGTGTGTCCGTTTGTTCC+TGG	0.370124	2_1:-8314399	None:intergenic
AATGTTGTTTCACATGAAGA+TGG	0.450601	2_1:+8314324	Msa0192480:CDS
ACATGTTTAAGGGATCAATG+AGG	0.703797	2_1:+8315724	Msa0192480:CDS
AGAACCTTGTTCATTGCGAG+CGG	0.622173	2_1:-8314562	None:intergenic
AGACAATGGACTATAAAATT+TGG	0.261459	2_1:-8316102	None:intergenic
AGACACTCAGAGATAAGAGT+AGG	0.601286	2_1:-8314507	None:intergenic
AGACCTTCTTCATCTTCTCG+TGG	0.632890	2_1:+8314474	Msa0192480:CDS
AGAGTAATTCATAGTTAAAG+AGG	0.491467	2_1:+8315857	Msa0192480:exon

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATGATAACTGTTCTCG+TGG	+	chr2_1:8314624-8314643	Msa0192480:intron	30.0%
AAAATGATAACTGTTCTCGT+GGG	+	chr2_1:8314625-8314644	Msa0192480:intron	30.0%
GGGGATCTAAAAATAAACAT+TGG	-	chr2_1:8314856-8314875	None:intergenic	30.0%
TATTAAGAGTTTAGAGAGGA+AGG	+	chr2_1:8314985-8315004	Msa0192480:intron	30.0%
GAAACTTATGATTCATTGGT+TGG	+	chr2_1:8315034-8315053	Msa0192480:intron	30.0%
TAAACACTTGTGACACTATT+TGG	+	chr2_1:8315215-8315234	Msa0192480:intron	30.0%
AAACACTTGTGACACTATTT+GGG	+	chr2_1:8315216-8315235	Msa0192480:intron	30.0%
AAGCTATCCTATAGATGTTA+TGG	-	chr2_1:8315295-8315314	None:intergenic	30.0%
AAATAAACTACAAGCCTACT+TGG	-	chr2_1:8315441-8315460	None:intergenic	30.0%
AAGAAACTATTGATGTTGCA+GGG	-	chr2_1:8315547-8315566	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	8314169	8316125	8314169	ID=Msa0192480;Name=Msa0192480
chr2_1	mRNA	8314169	8316125	8314169	ID=Msa0192480-mRNA-1;Parent=Msa0192480;Name=Msa0192480-mRNA-1;_AED=0.00;_eAED=0.00;_QI=143\|1\|1\|1\|1\|1\|2\|262\|152
chr2_1	exon	8314169	8314579	8314169	ID=Msa0192480-mRNA-1:exon:3816;Parent=Msa0192480-mRNA-1
chr2_1	exon	8315673	8316125	8315673	ID=Msa0192480-mRNA-1:exon:3817;Parent=Msa0192480-mRNA-1
chr2_1	five_prime_UTR	8314169	8314311	8314169	ID=Msa0192480-mRNA-1:five_prime_utr;Parent=Msa0192480-mRNA-1
chr2_1	CDS	8314312	8314579	8314312	ID=Msa0192480-mRNA-1:cds;Parent=Msa0192480-mRNA-1
chr2_1	CDS	8315673	8315863	8315673	ID=Msa0192480-mRNA-1:cds;Parent=Msa0192480-mRNA-1
chr2_1	three_prime_UTR	8315864	8316125	8315864	ID=Msa0192480-mRNA-1:three_prime_utr;Parent=Msa0192480-mRNA-1

Gene Sequence

>Msa0192480

ATGGCATCATCGAATGTTGTTTCACATGAAGATGGAACCAAACCCGCAAAGAGAAAACCCACTTTCACAAAAGTGGATCAGATGAAACCAGGAACAAACGGACACACTTTGATTGCTAAGGTTTTAACCTCCGAAACTGTTCTGCAAAAAGGTGGAGGAACAAGACCTTCTTCATCTTCTCGTGGTATTGTTCGTCCTACTCTTATCTCTGAGTGTCTCATCGGTGATGAAACTGGTACCATCATTTTCACCGCTCGCAATGAACAAGTTGAGCTTATGAAGGCTGGAAATACAGTAATCATTCGCAATGCAAAGATTGACATGTTTAAGGGATCAATGAGGCTGGCCGTTGACAAATGGGGGCGCATTGAGGTCACTGACCCTGCAGAGTTCGTTGTTAAAGAGGATAACAACCTATCTCTCATTGAATATGAATTGGTGAACGCAGTTGAAGAGTAA

Protein sequence

>Msa0192480

MASSNVVSHEDGTKPAKRKPTFTKVDQMKPGTNGHTLIAKVLTSETVLQKGGGTRPSSSSRGIVRPTLISECLIGDETGTIIFTARNEQVELMKAGNTVIIRNAKIDMFKGSMRLAVDKWGRIEVTDPAEFVVKEDNNLSLIEYELVNAVEE*