AlfalfaGEDB | Msa0428580

M. sativa cultivar zhongmu-4 / Msa0428580

KEGG: K17046
GO: -
PFAM: PF08766.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428580	XP_003602786.1	96.415	530	12	4	1	528	1	525	0.0	987

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428580	sp\|Q9SMM8\|DEKP1_ARATH	48.970	437	191	12	71	499	30	442	4.93e-111	341

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428580	G7J3D6	96.415	530	12	4	1	528	1	525	0.0	987

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa0428580	0.817777	2.765545e-52	-8.615850e-47
Msa0000880	Msa0428580	0.824259	8.892189e-54	-8.615850e-47
Msa0000910	Msa0428580	0.819236	1.290949e-52	-8.615850e-47
Msa0001940	Msa0428580	0.846720	1.818788e-59	-8.615850e-47
Msa0002560	Msa0428580	0.839787	1.285726e-57	-8.615850e-47
Msa0002680	Msa0428580	0.835704	1.437254e-56	-8.615850e-47
Msa0002710	Msa0428580	0.828293	9.743125e-55	-8.615850e-47
Msa0003220	Msa0428580	0.853398	2.453669e-61	-8.615850e-47
Msa0003270	Msa0428580	0.815707	8.051744e-52	-8.615850e-47
Msa0003400	Msa0428580	0.815392	9.467312e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428580	MtrunA17_Chr3g0132011	96.415	530	12	4	1	528	1	525	0.0	987
Msa0428580	MtrunA17_Chr3g0102341	40.334	419	215	9	95	491	371	776	2.61e-67	232
Msa0428580	MtrunA17_Chr5g0446481	51.613	186	82	4	95	279	397	575	1.15e-53	195

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428580	AT3G48710.1	48.970	437	191	12	71	499	30	442	5.01e-112	341
Msa0428580	AT5G63550.2	49.043	418	173	10	96	499	94	485	4.26e-99	310
Msa0428580	AT5G63550.1	48.558	416	177	9	96	499	94	484	1.48e-97	306
Msa0428580	AT5G55660.1	52.632	171	73	4	95	263	323	487	5.38e-46	172
Msa0428580	AT4G26630.2	43.860	285	129	6	12	270	207	486	2.15e-42	162
Msa0428580	AT4G26630.1	43.860	285	129	6	12	270	207	486	2.15e-42	162

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Find 140 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGAGAACAAGGGTAA+AGG	0.493647	3_2:-79548986	Msa0428580:CDS
AAAAGATCGTACCAAGTTGG+CGG	0.607538	3_2:+79546493	None:intergenic
AAACAAGAGTAGTGTGAAGA+AGG	0.535530	3_2:-79548899	Msa0428580:intron
AAAGATGATGATGATGAAGA+TGG	0.532403	3_2:-79550391	Msa0428580:CDS
AAAGCAAGATACTAAGGGAA+AGG	0.596671	3_2:-79547051	Msa0428580:CDS
AAAGCCTTCTGATGTTGAAG+AGG	0.584119	3_2:-79547411	Msa0428580:CDS
AAAGCTTTGGTAGGTATGTT+TGG	0.342703	3_2:-79546120	Msa0428580:three_prime_UTR
AAAGGAAAAGCAAGATACTA+AGG	0.439714	3_2:-79547057	Msa0428580:CDS
AAATAATGGAAGTGATAACG+AGG	0.765529	3_2:-79547327	Msa0428580:CDS
AAATCTGTAATAAAGGGGTG+CGG	0.557661	3_2:+79546025	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATACTTGAGACGAGAA+CGG	+	chr3_2:79545986-79546005	None:intergenic	30.0%
AGAGAGAGAAATAAAAAAGG+GGG	+	chr3_2:79546142-79546161	None:intergenic	30.0%
AGAATAGGAAAGATGAGATT+TGG	+	chr3_2:79546176-79546195	None:intergenic	30.0%
CCTAGAATTAGAAGTAGAAT+AGG	+	chr3_2:79546191-79546210	None:intergenic	30.0%
CCTATTCTACTTCTAATTCT+AGG	-	chr3_2:79546188-79546207	Msa0428580:three_prime_UTR	30.0%
TTCATCATCATCATCTTTCT+CGG	+	chr3_2:79546426-79546445	None:intergenic	30.0%
TTCAATTATCAGTCCTTTAC+TGG	+	chr3_2:79546648-79546667	None:intergenic	30.0%
TACCTCAAAAACCAAAATTG+AGG	+	chr3_2:79546695-79546714	None:intergenic	30.0%
TGCTCAAAAGTAACTATGTA+AGG	+	chr3_2:79546808-79546827	None:intergenic	30.0%
TGAAGATATCGTGTGAATTT+AGG	-	chr3_2:79546836-79546855	Msa0428580:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	79545927	79550914	79545927	ID=Msa0428580;Name=Msa0428580
chr3_2	mRNA	79545927	79550914	79545927	ID=Msa0428580-mRNA-1;Parent=Msa0428580;Name=Msa0428580-mRNA-1;_AED=0.08;_eAED=0.08;_QI=342\|1\|1\|1\|1\|1\|11\|315\|531
chr3_2	exon	79545927	79546420	79545927	ID=Msa0428580-mRNA-1:exon:21481;Parent=Msa0428580-mRNA-1
chr3_2	exon	79546505	79546535	79546505	ID=Msa0428580-mRNA-1:exon:21480;Parent=Msa0428580-mRNA-1
chr3_2	exon	79546627	79546724	79546627	ID=Msa0428580-mRNA-1:exon:21479;Parent=Msa0428580-mRNA-1
chr3_2	exon	79547012	79547468	79547012	ID=Msa0428580-mRNA-1:exon:21478;Parent=Msa0428580-mRNA-1
chr3_2	exon	79548333	79548395	79548333	ID=Msa0428580-mRNA-1:exon:21477;Parent=Msa0428580-mRNA-1
chr3_2	exon	79548728	79548808	79548728	ID=Msa0428580-mRNA-1:exon:21476;Parent=Msa0428580-mRNA-1
chr3_2	exon	79548900	79549010	79548900	ID=Msa0428580-mRNA-1:exon:21475;Parent=Msa0428580-mRNA-1
chr3_2	exon	79549174	79549233	79549174	ID=Msa0428580-mRNA-1:exon:21474;Parent=Msa0428580-mRNA-1
chr3_2	exon	79549325	79549404	79549325	ID=Msa0428580-mRNA-1:exon:21473;Parent=Msa0428580-mRNA-1
chr3_2	exon	79550050	79550083	79550050	ID=Msa0428580-mRNA-1:exon:21472;Parent=Msa0428580-mRNA-1
chr3_2	exon	79550171	79550914	79550171	ID=Msa0428580-mRNA-1:exon:21471;Parent=Msa0428580-mRNA-1
chr3_2	five_prime_UTR	79550573	79550914	79550573	ID=Msa0428580-mRNA-1:five_prime_utr;Parent=Msa0428580-mRNA-1
chr3_2	CDS	79550171	79550572	79550171	ID=Msa0428580-mRNA-1:cds;Parent=Msa0428580-mRNA-1
chr3_2	CDS	79550050	79550083	79550050	ID=Msa0428580-mRNA-1:cds;Parent=Msa0428580-mRNA-1
chr3_2	CDS	79549325	79549404	79549325	ID=Msa0428580-mRNA-1:cds;Parent=Msa0428580-mRNA-1
chr3_2	CDS	79549174	79549233	79549174	ID=Msa0428580-mRNA-1:cds;Parent=Msa0428580-mRNA-1
chr3_2	CDS	79548900	79549010	79548900	ID=Msa0428580-mRNA-1:cds;Parent=Msa0428580-mRNA-1
chr3_2	CDS	79548728	79548808	79548728	ID=Msa0428580-mRNA-1:cds;Parent=Msa0428580-mRNA-1
chr3_2	CDS	79548333	79548395	79548333	ID=Msa0428580-mRNA-1:cds;Parent=Msa0428580-mRNA-1
chr3_2	CDS	79547012	79547468	79547012	ID=Msa0428580-mRNA-1:cds;Parent=Msa0428580-mRNA-1
chr3_2	CDS	79546627	79546724	79546627	ID=Msa0428580-mRNA-1:cds;Parent=Msa0428580-mRNA-1
chr3_2	CDS	79546505	79546535	79546505	ID=Msa0428580-mRNA-1:cds;Parent=Msa0428580-mRNA-1
chr3_2	CDS	79546242	79546420	79546242	ID=Msa0428580-mRNA-1:cds;Parent=Msa0428580-mRNA-1
chr3_2	three_prime_UTR	79545927	79546241	79545927	ID=Msa0428580-mRNA-1:three_prime_utr;Parent=Msa0428580-mRNA-1

Gene Sequence

>Msa0428580

ATGGCTACCGAAACCCTAGACGATACCAAACCAAAACAAGTCGAAAACGAAGCCAAAGATGAACCCAAACCAGAAGAAGAAGTTGAAGTAACTGAACAAGACGCGGAAATTGCTGAATCTGATGAGAAGAAAGAGATCGATGAACATGAAGATTCCGAGAAAGATGATGATGATGAAGATGGAGACGAAGATGATGCTGATGCTGATGCTGATGATGAGGAGGAGGAAGATGCTGGTGAGAAGAAGGGTGTGAAGAAAGAAGCGTCGTCCGAGAAGAAGAGTCCGGTTACTCCGACGAGTGATAGGCCAACTAGGGAAAGGAAGACGGTGGAGCGATACTCTGAACCTTCACCTTCGAAGTTTGGAAGGTCTTCTTCCAGTAAAGGACTGATAATTGAAAAGGGACGTGGTACTCAGCTCAAGGATATTCCTAATGTGGCTTTCAAGTTGTCAAAGAGAAAACCTGATGACAACCTGCATATGCTCCATAGTATACTGTTTGGGAAGAAAACAAAGGTTAACAATCTAAAGAGGAATATAGGCCAGTTTTCTGGTTATGTGTGGGCTGAAAATGAGGAAAAACAGAGAACAAGGGTAAAGGAGAGGATTGACAAATGTGTGAAAGAAAAATTGATTGTCTTCTGCGATGTTCTTAATATTCCAATAAACAAGAGTAGTGTGAAGAAGGAGGAACTGTCTGCAAAGCTGTTGGAATTTCTGGAGTCCCCACATGCTACTACTGATGTTCTTCTTGCTGAAAAAGAACAGAAAGGTAAGAAGCGAGTTAGAAAAGCAACCTCTAGCAAATCTCCTGGAGAAACACCTGCAAAGAAGAAAAAGCAAACTTCAGAATCTGGAAAAAAGCGAAAGCCTTCTGATGTTGAAGAGGATGACCAAGCTGAACTTTCTGATGCAAAAGATGAGTCCCAAGATGAAGATGTTGCAGTGGCAAATAATGGAAGTGATAACGAGGTGGGTAAATCAGAGGGAGAGGAAGATACACCAAAAGCTCACAAGAGTACTTCCAAAAAATCTGTGAAGGAGGGTTCAGTTGCCAAAGCTGAAGCTAAATCCACATCTGTTAAGAAGACCTCTGCAAAAGCTGCCAAAAGCAGTGAAAAAACTCCAAAAAAATCAATACCAAAAAAATCAATTACCGAGCAGGATTCTGCTTCTCTTTCCAAGTCAGATCAACCTGCAACCAAGATACAAAAAACTGGAAAGGAAAAGCAAGATACTAAGGGAAAGGCTGCAAGCAAAACTGCAAAGGCTGCGGTTAAGGATCAAGGTAAAGGTAAAAGTAGTAAGAAGACCAAGGTAGAGCCGAGTAGGCAGGACATGCACGCAGTTGTAGTTGAGATTCTTAAGGAAGTAGATTTCAATAAGGCAACTTTGTGTGATATCCTCCGCCAACTTGGTAAACATTTTGGCCTTGATTTAATGCATAGAAAAGCAGAGGTGAAGGATATCATCACAGATGTAATTAATAATATGTCTGATGAGGAAGATGAAGGTGAGGAAGAAGCTGATAGTGATGGCGATGGGGATGTCGATGCGGGTAAAGATGGCGACGCCAGTGATGAAGATGAAGAGTAA

Protein sequence

>Msa0428580

MATETLDDTKPKQVENEAKDEPKPEEEVEVTEQDAEIAESDEKKEIDEHEDSEKDDDDEDGDEDDADADADDEEEEDAGEKKGVKKEASSEKKSPVTPTSDRPTRERKTVERYSEPSPSKFGRSSSSKGLIIEKGRGTQLKDIPNVAFKLSKRKPDDNLHMLHSILFGKKTKVNNLKRNIGQFSGYVWAENEEKQRTRVKERIDKCVKEKLIVFCDVLNIPINKSSVKKEELSAKLLEFLESPHATTDVLLAEKEQKGKKRVRKATSSKSPGETPAKKKKQTSESGKKRKPSDVEEDDQAELSDAKDESQDEDVAVANNGSDNEVGKSEGEEDTPKAHKSTSKKSVKEGSVAKAEAKSTSVKKTSAKAAKSSEKTPKKSIPKKSITEQDSASLSKSDQPATKIQKTGKEKQDTKGKAASKTAKAAVKDQGKGKSSKKTKVEPSRQDMHAVVVEILKEVDFNKATLCDILRQLGKHFGLDLMHRKAEVKDIITDVINNMSDEEDEGEEEADSDGDGDVDAGKDGDASDEDEE*