AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0428580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0428580 MtrunA17_Chr3g0132011 96.415 530 12 4 1 528 1 525 0.0 987
Msa0428580 MtrunA17_Chr3g0102341 40.334 419 215 9 95 491 371 776 2.61e-67 232
Msa0428580 MtrunA17_Chr5g0446481 51.613 186 82 4 95 279 397 575 1.15e-53 195
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0428580 AT3G48710.1 48.970 437 191 12 71 499 30 442 5.01e-112 341
Msa0428580 AT5G63550.2 49.043 418 173 10 96 499 94 485 4.26e-99 310
Msa0428580 AT5G63550.1 48.558 416 177 9 96 499 94 484 1.48e-97 306
Msa0428580 AT5G55660.1 52.632 171 73 4 95 263 323 487 5.38e-46 172
Msa0428580 AT4G26630.2 43.860 285 129 6 12 270 207 486 2.15e-42 162
Msa0428580 AT4G26630.1 43.860 285 129 6 12 270 207 486 2.15e-42 162

Find 140 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAAAGCTGTTGGAATTTC+TGG 0.096765 3_2:-79548775 Msa0428580:CDS
TTCACACTACTCTTGTTTAT+TGG 0.122133 3_2:+79548904 None:intergenic
CCTATTCTACTTCTAATTCT+AGG 0.171908 3_2:-79550631 Msa0428580:five_prime_UTR
GCAATGTTAAATTTATTTAT+TGG 0.173383 3_2:-79545928 Msa0428580:three_prime_UTR
TTCTGGTTTGGGTTCATCTT+TGG 0.192982 3_2:+79550498 None:intergenic
TTCAACTTCTTCTTCTGGTT+TGG 0.223760 3_2:+79550486 None:intergenic
TATGATAGATGCTCTAAATT+AGG 0.236927 3_2:-79546078 Msa0428580:three_prime_UTR
TTCAATTATCAGTCCTTTAC+TGG 0.245498 3_2:+79550174 None:intergenic
ATGTTGACAGGTAAACATTT+TGG 0.262420 3_2:-79546408 Msa0428580:intron
AAATGACAAATCTGTAATAA+AGG 0.263279 3_2:+79546018 None:intergenic
TCAACTTCTTCTTCTGGTTT+GGG 0.267047 3_2:+79550487 None:intergenic
CAATGTTAAATTTATTTATT+GGG 0.289715 3_2:-79545927 Msa0428580:three_prime_UTR
GAACCTTCACCTTCGAAGTT+TGG 0.300483 3_2:-79550208 Msa0428580:CDS
GTTACTTCAACTTCTTCTTC+TGG 0.304574 3_2:+79550481 None:intergenic
TAACATTGCTCTAAATTAGA+AGG 0.312028 3_2:+79545942 None:intergenic
AGAATAGGAAAGATGAGATT+TGG 0.329354 3_2:+79550646 None:intergenic
AATAAAGACAATACCTTTGC+AGG 0.331373 3_2:+79548319 None:intergenic
GGAAAGATGAGATTTGGAAT+TGG 0.340647 3_2:+79550652 None:intergenic
ACCGTCTTCCTTTCCCTAGT+TGG 0.341819 3_2:+79550244 None:intergenic
AAAGCTTTGGTAGGTATGTT+TGG 0.342703 3_2:-79546120 Msa0428580:three_prime_UTR
AACTGCAAAGGCTGCGGTTA+AGG 0.346132 3_2:-79547018 Msa0428580:CDS
GAAAGATGAGATTTGGAATT+GGG 0.348178 3_2:+79550653 None:intergenic
AATGACAAATCTGTAATAAA+GGG 0.349283 3_2:+79546019 None:intergenic
GAAGTACTCTTGTGAGCTTT+TGG 0.351465 3_2:+79547275 None:intergenic
CACTGCAACATCTTCATCTT+GGG 0.358494 3_2:+79547352 None:intergenic
GGAAGATGCTGGTGAGAAGA+AGG 0.360035 3_2:-79550326 Msa0428580:CDS
TAAGGAAGTAGATTTCAATA+AGG 0.361423 3_2:-79546626 Msa0428580:intron
TCTTCCCAAACAGTATACTA+TGG 0.363218 3_2:+79549333 None:intergenic
TTCATCATCATCATCTTTCT+CGG 0.365632 3_2:+79550396 None:intergenic
CCACTGCAACATCTTCATCT+TGG 0.375147 3_2:+79547351 None:intergenic
CTATCACTCGTCGGAGTAAC+CGG 0.377163 3_2:+79550268 None:intergenic
ATGCTCCATAGTATACTGTT+TGG 0.382079 3_2:-79549338 Msa0428580:CDS
CTATTCTACTTCTAATTCTA+GGG 0.384269 3_2:-79550630 Msa0428580:five_prime_UTR
GTCTATACAGGTTAAAGCTT+TGG 0.386031 3_2:-79546133 Msa0428580:three_prime_UTR
TTTGGTATCGTCTAGGGTTT+CGG 0.386462 3_2:+79550543 None:intergenic
CTCCTGTTAGCTGTCTATAC+AGG 0.397071 3_2:-79546145 Msa0428580:three_prime_UTR
GTGCGGGTTACATCTAAATA+TGG 0.398787 3_2:+79546042 None:intergenic
CCTAGAATTAGAAGTAGAAT+AGG 0.410516 3_2:+79550631 None:intergenic
AACAATCTAAAGAGGAATAT+AGG 0.417865 3_2:-79549208 Msa0428580:CDS
TGCTCCATAGTATACTGTTT+GGG 0.420968 3_2:-79549337 Msa0428580:CDS
CCCACACATAACCAGAAAAC+TGG 0.422298 3_2:+79549185 None:intergenic
ACCTTTGCAGGTGTTTCTCC+AGG 0.429504 3_2:+79548331 None:intergenic
CGGTTACTCCGACGAGTGAT+AGG 0.432059 3_2:-79550267 Msa0428580:CDS
GGTAGCCATGGATGAAGAAA+AGG 0.436423 3_2:+79550564 None:intergenic
AAAGGAAAAGCAAGATACTA+AGG 0.439714 3_2:-79547057 Msa0428580:CDS
TGTGGATTTAGCTTCAGCTT+TGG 0.444959 3_2:+79547223 None:intergenic
AGCATATGCAGGTTGTCATC+AGG 0.452386 3_2:+79549356 None:intergenic
AGTTGTAGTTGAGATTCTTA+AGG 0.454398 3_2:-79546644 Msa0428580:CDS
CAGCTCAAGGATATTCCTAA+TGG 0.456524 3_2:-79550049 Msa0428580:intron
CGACGAGTGATAGGCCAACT+AGG 0.464921 3_2:-79550258 Msa0428580:CDS
TCTAGGGTTTCTCTTCCGCT+AGG 0.467674 3_2:-79550614 Msa0428580:five_prime_UTR
CTGCCTACTCGGCTCTACCT+TGG 0.468843 3_2:+79546678 None:intergenic
AACCTGTATAGACAGCTAAC+AGG 0.473251 3_2:+79546143 None:intergenic
TAAAGGACTGATAATTGAAA+AGG 0.476582 3_2:-79550170 Msa0428580:intron
GGAAGGTCTTCTTCCAGTAA+AGG 0.477738 3_2:-79550187 Msa0428580:CDS
TGCAGAAAATAGAATCTTGT+GGG 0.483707 3_2:-79546197 Msa0428580:three_prime_UTR
TAGAGCATCTATCATAGAAA+AGG 0.483847 3_2:+79546085 None:intergenic
GATGTTGCAGTGGCAAATAA+TGG 0.486223 3_2:-79547341 Msa0428580:CDS
AAAACAGAGAACAAGGGTAA+AGG 0.493647 3_2:-79548986 Msa0428580:CDS
GGTTGCAGGTTGATCTGACT+TGG 0.495113 3_2:+79547097 None:intergenic
GATGTCGATGCGGGTAAAGA+TGG 0.495668 3_2:-79546270 Msa0428580:CDS
TTACTCTTCATCTTCATCAC+TGG 0.499151 3_2:+79546242 None:intergenic
CTTCACCTTCGAAGTTTGGA+AGG 0.500580 3_2:-79550204 Msa0428580:CDS
GCAACCTCTAGCAAATCTCC+TGG 0.500613 3_2:-79548349 Msa0428580:CDS
GAAGATGCTGGTGAGAAGAA+GGG 0.505112 3_2:-79550325 Msa0428580:CDS
CAAGGTAGAGCCGAGTAGGC+AGG 0.505315 3_2:-79546677 Msa0428580:CDS
GGAACTGTCTGCAAAGCTGT+TGG 0.508885 3_2:-79548784 Msa0428580:CDS
CTAGGGTTTCTCTTCCGCTA+GGG 0.510869 3_2:-79550613 Msa0428580:five_prime_UTR
GCGTGCATGTCCTGCCTACT+CGG 0.511396 3_2:+79546667 None:intergenic
GGCGATGGGGATGTCGATGC+GGG 0.518653 3_2:-79546279 Msa0428580:CDS
TGTGATATCCTCCGCCAACT+TGG 0.519770 3_2:-79546504 Msa0428580:intron
GATGAGGAGGAGGAAGATGC+TGG 0.524251 3_2:-79550337 Msa0428580:CDS
TGAAAATAAAATTTAGCTGT+GGG 0.524487 3_2:+79546170 None:intergenic
GTCTAGGGTTTCGGTAGCCA+TGG 0.528885 3_2:+79550552 None:intergenic
AAGCTGATAGTGATGGCGAT+GGG 0.530338 3_2:-79546293 Msa0428580:CDS
AAAGATGATGATGATGAAGA+TGG 0.532403 3_2:-79550391 Msa0428580:CDS
CAATAATAATGTTTACATGC+AGG 0.532869 3_2:+79545965 None:intergenic
CTTCCAAACTTCGAAGGTGA+AGG 0.533904 3_2:+79550205 None:intergenic
AAACAAGAGTAGTGTGAAGA+AGG 0.535530 3_2:-79548899 Msa0428580:intron
AAGGCTGCGGTTAAGGATCA+AGG 0.539742 3_2:-79547011 Msa0428580:intron
GTATACTATGGAGCATATGC+AGG 0.541768 3_2:+79549345 None:intergenic
GGTGGGTAAATCAGAGGGAG+AGG 0.543397 3_2:-79547306 Msa0428580:CDS
TCATCCTCTTCAACATCAGA+AGG 0.546993 3_2:+79547407 None:intergenic
GCATAGAAAAGCAGAGGTGA+AGG 0.548691 3_2:-79546373 Msa0428580:CDS
AAGCAAAACTGCAAAGGCTG+CGG 0.555092 3_2:-79547024 Msa0428580:CDS
GGCTGCAAGCAAAACTGCAA+AGG 0.556180 3_2:-79547030 Msa0428580:CDS
AAATCTGTAATAAAGGGGTG+CGG 0.557661 3_2:+79546025 None:intergenic
ATGAAAATAAAATTTAGCTG+TGG 0.560967 3_2:+79546169 None:intergenic
AGACCAAGGTAGAGCCGAGT+AGG 0.561195 3_2:-79546681 Msa0428580:CDS
GTCAGGTTAACAATCTAAAG+AGG 0.562124 3_2:-79549216 Msa0428580:intron
AGTAACCGGACTCTTCTTCT+CGG 0.563106 3_2:+79550282 None:intergenic
CTGCAGAAAATAGAATCTTG+TGG 0.567663 3_2:-79546198 Msa0428580:three_prime_UTR
TCCTGGAGAAACACCTGCAA+AGG 0.568341 3_2:-79548332 Msa0428580:intron
ATACAGGTTAAAGCTTTGGT+AGG 0.571121 3_2:-79546129 Msa0428580:three_prime_UTR
AGAGGTCTTCTTAACAGATG+TGG 0.571409 3_2:+79547205 None:intergenic
AGATCGTACCAAGTTGGCGG+AGG 0.575455 3_2:+79546496 None:intergenic
GAAGCTGATAGTGATGGCGA+TGG 0.577833 3_2:-79546294 Msa0428580:CDS
AATGGAAGTGATAACGAGGT+GGG 0.578180 3_2:-79547323 Msa0428580:CDS
GTAGCCATGGATGAAGAAAA+GGG 0.579235 3_2:+79550565 None:intergenic
AAAGCCTTCTGATGTTGAAG+AGG 0.584119 3_2:-79547411 Msa0428580:CDS
TTGCATCAGAAAGTTCAGCT+TGG 0.584847 3_2:+79547384 None:intergenic
AATCTGTAATAAAGGGGTGC+GGG 0.591429 3_2:+79546026 None:intergenic
GACGAGTGATAGGCCAACTA+GGG 0.592833 3_2:-79550257 Msa0428580:CDS
AAAGCAAGATACTAAGGGAA+AGG 0.596671 3_2:-79547051 Msa0428580:CDS
TGGCGATGGGGATGTCGATG+CGG 0.597275 3_2:-79546280 Msa0428580:CDS
CTAGTTGGCCTATCACTCGT+CGG 0.600264 3_2:+79550259 None:intergenic
GTCGTCCGAGAAGAAGAGTC+CGG 0.602321 3_2:-79550287 Msa0428580:CDS
AACGAGGTGGGTAAATCAGA+GGG 0.602782 3_2:-79547311 Msa0428580:CDS
AAAAGATCGTACCAAGTTGG+CGG 0.607538 3_2:+79546493 None:intergenic
GCCAACTAGGGAAAGGAAGA+CGG 0.609544 3_2:-79550245 Msa0428580:CDS
TGCTGATGCTGATGATGAGG+AGG 0.610866 3_2:-79550350 Msa0428580:CDS
GGGACGTGGTACTCAGCTCA+AGG 0.613257 3_2:-79550062 Msa0428580:CDS
GAGGAAGAAGCTGATAGTGA+TGG 0.613294 3_2:-79546300 Msa0428580:CDS
TGATGAGGAAGATGAAGGTG+AGG 0.613693 3_2:-79546319 Msa0428580:CDS
GTGATAGGCCAACTAGGGAA+AGG 0.614124 3_2:-79550252 Msa0428580:CDS
AAGGAAAAGCAAGATACTAA+GGG 0.616103 3_2:-79547056 Msa0428580:CDS
AATTAATAATATGTCTGATG+AGG 0.618113 3_2:-79546334 Msa0428580:CDS
ATGACAAATCTGTAATAAAG+GGG 0.618647 3_2:+79546020 None:intergenic
TGATGCTGATGATGAGGAGG+AGG 0.619807 3_2:-79550347 Msa0428580:CDS
GAACATCAGTAGTAGCATGT+GGG 0.620057 3_2:+79548748 None:intergenic
TTATGTGTGGGCTGAAAATG+AGG 0.621414 3_2:-79549173 Msa0428580:intron
TTTAATGCATAGAAAAGCAG+AGG 0.621749 3_2:-79546379 Msa0428580:CDS
GAAGACCTTCCAAACTTCGA+AGG 0.621788 3_2:+79550199 None:intergenic
AGAACATCAGTAGTAGCATG+TGG 0.622938 3_2:+79548747 None:intergenic
TTCTCCAGGAGATTTGCTAG+AGG 0.624862 3_2:+79548345 None:intergenic
AGAGAACAAGGGTAAAGGAG+AGG 0.625869 3_2:-79548981 Msa0428580:CDS
TAATGGAAGTGATAACGAGG+TGG 0.625907 3_2:-79547324 Msa0428580:CDS
TAACGAGGTGGGTAAATCAG+AGG 0.626281 3_2:-79547312 Msa0428580:CDS
AACATCAGTAGTAGCATGTG+GGG 0.636718 3_2:+79548749 None:intergenic
TAAAAGTAGTAAGAAGACCA+AGG 0.637365 3_2:-79546695 Msa0428580:CDS
CCAAGATGAAGATGTTGCAG+TGG 0.642055 3_2:-79547351 Msa0428580:CDS
TGATGCTGATGCTGATGATG+AGG 0.644932 3_2:-79550353 Msa0428580:CDS
AAGAGAAGCAGAATCCTGCT+CGG 0.653130 3_2:+79547121 None:intergenic
ATGTCTGATGAGGAAGATGA+AGG 0.653342 3_2:-79546324 Msa0428580:CDS
AACTAGGGAAAGGAAGACGG+TGG 0.691004 3_2:-79550242 Msa0428580:CDS
ACTGTTTGGGAAGAAAACAA+AGG 0.691158 3_2:-79549324 Msa0428580:intron
AGCTGATAGTGATGGCGATG+GGG 0.696008 3_2:-79546292 Msa0428580:CDS
TGAAGTAACTGAACAAGACG+CGG 0.710408 3_2:-79550467 Msa0428580:CDS
GAAAAGATTGAAAACCCTAG+CGG 0.718687 3_2:+79550599 None:intergenic
AAATAATGGAAGTGATAACG+AGG 0.765529 3_2:-79547327 Msa0428580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATTTATTTCATTTATTTAA+AGG - chr3_2:79547542-79547561 Msa0428580:intron 10.0%
!!! GTTTGTTATTTAATATAAAT+GGG - chr3_2:79548114-79548133 Msa0428580:intron 10.0%
!!! ATTTTTTTTTTCCTCAATTT+TGG - chr3_2:79546681-79546700 Msa0428580:CDS 15.0%
!!! GTTTTTGATTAATTTGATTT+TGG - chr3_2:79546723-79546742 Msa0428580:intron 15.0%
!!! GGTTTGTTATTTAATATAAA+TGG - chr3_2:79548113-79548132 Msa0428580:intron 15.0%
!!! AATATCAATTTTAGAATACT+TGG + chr3_2:79548308-79548327 None:intergenic 15.0%
!!! TGTCTTTATTTTATTCATTT+TGG - chr3_2:79548513-79548532 Msa0428580:intron 15.0%
!!! TTTTTTGGTATTGATTTTTT+TGG + chr3_2:79549670-79549689 None:intergenic 15.0%
!! TTCAGAATAACAAAAAATTA+GGG + chr3_2:79549983-79550002 None:intergenic 15.0%
!! GCAATGTTAAATTTATTTAT+TGG - chr3_2:79550891-79550910 Msa0428580:five_prime_UTR 15.0%
!! ATAGAGAGAGAAATAAAAAA+GGG + chr3_2:79546144-79546163 None:intergenic 20.0%
!! TATAGAGAGAGAAATAAAAA+AGG + chr3_2:79546145-79546164 None:intergenic 20.0%
!!! TTGATTTTGGTTATTTTTTC+AGG - chr3_2:79546736-79546755 Msa0428580:intron 20.0%
!!! TGATTTTGGTTATTTTTTCA+GGG - chr3_2:79546737-79546756 Msa0428580:intron 20.0%
!! AATGAAATAAATCTTTGCAA+AGG + chr3_2:79547535-79547554 None:intergenic 20.0%
!!! TATATCATTTTTGAATCCAA+AGG - chr3_2:79547953-79547972 Msa0428580:intron 20.0%
!!! TTTATTTTCCATTTTAGAAG+TGG + chr3_2:79547989-79548008 None:intergenic 20.0%
!!! ATAAATGGGTTAATATCATT+TGG - chr3_2:79548128-79548147 Msa0428580:intron 20.0%
!!! AATAAAAAAGATGATTTGTC+TGG + chr3_2:79548260-79548279 None:intergenic 20.0%
!!! AGACAAATCATCTTTTTTAT+TGG - chr3_2:79548259-79548278 Msa0428580:intron 20.0%
!! GAGAAAACTTAATTAATGTT+TGG - chr3_2:79548956-79548975 Msa0428580:CDS 20.0%
!! TCAGAATAACAAAAAATTAG+GGG + chr3_2:79549982-79550001 None:intergenic 20.0%
!! GTTCAGAATAACAAAAAATT+AGG + chr3_2:79549984-79550003 None:intergenic 20.0%
!! AATTAATAATATGTCTGATG+AGG - chr3_2:79550485-79550504 Msa0428580:CDS 20.0%
!! TGAAAATAAAATTTAGCTGT+GGG + chr3_2:79550652-79550671 None:intergenic 20.0%
!! ATGAAAATAAAATTTAGCTG+TGG + chr3_2:79550653-79550672 None:intergenic 20.0%
!! AATGACAAATCTGTAATAAA+GGG + chr3_2:79550803-79550822 None:intergenic 20.0%
!! AAATGACAAATCTGTAATAA+AGG + chr3_2:79550804-79550823 None:intergenic 20.0%
!!! TTTTTGGTTTTTAGTTTTGC+CGG - chr3_2:79546020-79546039 Msa0428580:three_prime_UTR 25.0%
! TAGAGAGAGAAATAAAAAAG+GGG + chr3_2:79546143-79546162 None:intergenic 25.0%
! CTATTCTACTTCTAATTCTA+GGG - chr3_2:79546189-79546208 Msa0428580:three_prime_UTR 25.0%
! TAAAGGACTGATAATTGAAA+AGG - chr3_2:79546649-79546668 Msa0428580:CDS 25.0%
!! TATAGTTGATTGAAGTATCA+TGG - chr3_2:79546980-79546999 Msa0428580:intron 25.0%
! AATTATAAGTCACGCTTATT+GGG + chr3_2:79547075-79547094 None:intergenic 25.0%
!! AAGTAATTGGTTTCAACAAA+AGG + chr3_2:79547205-79547224 None:intergenic 25.0%
! GCAAACAAAAATAAACATGT+GGG + chr3_2:79547232-79547251 None:intergenic 25.0%
! TTTCAATAACCAAAATGGTA+TGG + chr3_2:79547306-79547325 None:intergenic 25.0%
! TTTATTGCAAACTATTTCAG+TGG - chr3_2:79547417-79547436 Msa0428580:CDS 25.0%
! AACAATCTAAAGAGGAATAT+AGG - chr3_2:79547611-79547630 Msa0428580:intron 25.0%
! AATAGATATGAATCTTTGTG+AGG - chr3_2:79547708-79547727 Msa0428580:intron 25.0%
! ATAGATATGAATCTTTGTGA+GGG - chr3_2:79547709-79547728 Msa0428580:intron 25.0%
! ATCTACATCTTCACAATTAT+TGG - chr3_2:79547805-79547824 Msa0428580:intron 25.0%
!! TTCTAACAAAACATGTTTTC+AGG - chr3_2:79548011-79548030 Msa0428580:intron 25.0%
!!! TTGCTTTTATGTTAACAGAA+AGG - chr3_2:79548428-79548447 Msa0428580:intron 25.0%
!!! TTCTAGAGTTTGACTTTTTT+TGG - chr3_2:79548666-79548685 Msa0428580:intron 25.0%
!!! TCTAGAGTTTGACTTTTTTT+GGG - chr3_2:79548667-79548686 Msa0428580:intron 25.0%
! GAATATATGTGATGTATTTG+AGG + chr3_2:79548856-79548875 None:intergenic 25.0%
! TTTATGGAACTATCTTGAAT+GGG + chr3_2:79548925-79548944 None:intergenic 25.0%
!! TTTTATGGAACTATCTTGAA+TGG + chr3_2:79548926-79548945 None:intergenic 25.0%
! TTCAAGATAGTTCCATAAAA+AGG - chr3_2:79548926-79548945 Msa0428580:CDS 25.0%
!! TTCTCATTGTTTCCTTTTTA+TGG + chr3_2:79548941-79548960 None:intergenic 25.0%
! GAAGATATCTTCATACAAAT+TGG + chr3_2:79549083-79549102 None:intergenic 25.0%
! TTTATTCGCTAAAATGAACA+GGG + chr3_2:79549175-79549194 None:intergenic 25.0%
! ATTTATTCGCTAAAATGAAC+AGG + chr3_2:79549176-79549195 None:intergenic 25.0%
!!! TATCATCCTTTTATTTCCTT+TGG - chr3_2:79549249-79549268 Msa0428580:intron 25.0%
! AAGATCATCAAACATAAAGA+GGG + chr3_2:79549851-79549870 None:intergenic 25.0%
! AACTAAAGGTTTAAAAACTG+TGG + chr3_2:79549930-79549949 None:intergenic 25.0%
! AGAATAACAAAAAATTAGGG+GGG + chr3_2:79549980-79549999 None:intergenic 25.0%
! CAGAATAACAAAAAATTAGG+GGG + chr3_2:79549981-79550000 None:intergenic 25.0%
! TAAGGAAGTAGATTTCAATA+AGG - chr3_2:79550193-79550212 Msa0428580:CDS 25.0%
!! AAAATTTTTAACCTGCAAAC+TGG + chr3_2:79550246-79550265 None:intergenic 25.0%
! TGATAAAATTTCTTCCTTCA+GGG - chr3_2:79550352-79550371 Msa0428580:CDS 25.0%
!! TTTTGCAATTAAATGTTGAC+AGG - chr3_2:79550399-79550418 Msa0428580:CDS 25.0%
!! CTTTTCTATGCATTAAATCA+AGG + chr3_2:79550437-79550456 None:intergenic 25.0%
!! TATGATAGATGCTCTAAATT+AGG - chr3_2:79550741-79550760 Msa0428580:five_prime_UTR 25.0%
! ATGACAAATCTGTAATAAAG+GGG + chr3_2:79550802-79550821 None:intergenic 25.0%
! CAATAATAATGTTTACATGC+AGG + chr3_2:79550857-79550876 None:intergenic 25.0%
!! TAACATTGCTCTAAATTAGA+AGG + chr3_2:79550880-79550899 None:intergenic 25.0%
AAAAATACTTGAGACGAGAA+CGG + chr3_2:79545986-79546005 None:intergenic 30.0%
!!! TTTTGGTTTTTAGTTTTGCC+GGG - chr3_2:79546021-79546040 Msa0428580:three_prime_UTR 30.0%
!!! CTTCTTTTTTTTCTTTCTCC+CGG + chr3_2:79546042-79546061 None:intergenic 30.0%
AGAGAGAGAAATAAAAAAGG+GGG + chr3_2:79546142-79546161 None:intergenic 30.0%
! GAAAGATGAGATTTGGAATT+GGG + chr3_2:79546169-79546188 None:intergenic 30.0%
AGAATAGGAAAGATGAGATT+TGG + chr3_2:79546176-79546195 None:intergenic 30.0%
CCTAGAATTAGAAGTAGAAT+AGG + chr3_2:79546191-79546210 None:intergenic 30.0%
CCTATTCTACTTCTAATTCT+AGG - chr3_2:79546188-79546207 Msa0428580:three_prime_UTR 30.0%
TTCATCATCATCATCTTTCT+CGG + chr3_2:79546426-79546445 None:intergenic 30.0%
! AAAGATGATGATGATGAAGA+TGG - chr3_2:79546428-79546447 Msa0428580:intron 30.0%
TTCAATTATCAGTCCTTTAC+TGG + chr3_2:79546648-79546667 None:intergenic 30.0%
!!! TTCCTCAATTTTGGTTTTTG+AGG - chr3_2:79546690-79546709 Msa0428580:CDS 30.0%
TACCTCAAAAACCAAAATTG+AGG + chr3_2:79546695-79546714 None:intergenic 30.0%
TGCTCAAAAGTAACTATGTA+AGG + chr3_2:79546808-79546827 None:intergenic 30.0%
TGAAGATATCGTGTGAATTT+AGG - chr3_2:79546836-79546855 Msa0428580:intron 30.0%
GAAGATATCGTGTGAATTTA+GGG - chr3_2:79546837-79546856 Msa0428580:intron 30.0%
TAAACAAGACTTCCAAATAC+TGG + chr3_2:79546919-79546938 None:intergenic 30.0%
GAATTATAAGTCACGCTTAT+TGG + chr3_2:79547076-79547095 None:intergenic 30.0%
TAAGCGTGACTTATAATTCT+AGG - chr3_2:79547077-79547096 Msa0428580:CDS 30.0%
AAGCGTGACTTATAATTCTA+GGG - chr3_2:79547078-79547097 Msa0428580:CDS 30.0%
ACAAAAGGTTGCTTATATGT+TGG + chr3_2:79547190-79547209 None:intergenic 30.0%
GGCAAACAAAAATAAACATG+TGG + chr3_2:79547233-79547252 None:intergenic 30.0%
TGACAAGTATTATGCATGTA+CGG + chr3_2:79547254-79547273 None:intergenic 30.0%
CAGTGTTTCAATAACCAAAA+TGG + chr3_2:79547311-79547330 None:intergenic 30.0%
!!! CACTGACTTTCATAATCTTT+TGG - chr3_2:79547326-79547345 Msa0428580:CDS 30.0%
TGTTATGTGTATGGTATTAG+TGG - chr3_2:79547351-79547370 Msa0428580:CDS 30.0%
TAGATATGAATCTTTGTGAG+GGG - chr3_2:79547710-79547729 Msa0428580:intron 30.0%
GAAGATGTAGATTTAATTGC+AGG + chr3_2:79547797-79547816 None:intergenic 30.0%
! TTCACACTACTCTTGTTTAT+TGG + chr3_2:79547918-79547937 None:intergenic 30.0%
! TTCAAGTACCACTTCTAAAA+TGG - chr3_2:79547978-79547997 Msa0428580:intron 30.0%
!! TAACAAAACATGTTTTCAGG+AGG - chr3_2:79548014-79548033 Msa0428580:intron 30.0%
TCATCAATCAGTTAAGACAA+AGG + chr3_2:79548229-79548248 None:intergenic 30.0%
AATAAAGACAATACCTTTGC+AGG + chr3_2:79548503-79548522 None:intergenic 30.0%
CTAGAACGAATATTCAGAAT+TGG + chr3_2:79548652-79548671 None:intergenic 30.0%
! TGATTTGGATAGTTGTATTG+TGG - chr3_2:79548752-79548771 Msa0428580:CDS 30.0%
GATACTTGTAATATGCTGTT+TGG - chr3_2:79549000-79549019 Msa0428580:intron 30.0%
! GGTTCTAATTAAAGTCAATC+AGG + chr3_2:79549154-79549173 None:intergenic 30.0%
AATCCTCCAAAGGAAATAAA+AGG + chr3_2:79549258-79549277 None:intergenic 30.0%
AAAAAGCAAACTTCAGAATC+TGG - chr3_2:79549376-79549395 Msa0428580:CDS 30.0%
! AAATAATGGAAGTGATAACG+AGG - chr3_2:79549492-79549511 Msa0428580:intron 30.0%
TACTTCCAAAAAATCTGTGA+AGG - chr3_2:79549561-79549580 Msa0428580:intron 30.0%
!!! TGCTCGGTAATTGATTTTTT+TGG + chr3_2:79549685-79549704 None:intergenic 30.0%
AAAAAAATCAATTACCGAGC+AGG - chr3_2:79549684-79549703 Msa0428580:intron 30.0%
!!! CTTTCCAGTTTTTTGTATCT+TGG + chr3_2:79549746-79549765 None:intergenic 30.0%
CAAGATACAAAAAACTGGAA+AGG - chr3_2:79549744-79549763 Msa0428580:intron 30.0%
AAAGGAAAAGCAAGATACTA+AGG - chr3_2:79549762-79549781 Msa0428580:intron 30.0%
AAGGAAAAGCAAGATACTAA+GGG - chr3_2:79549763-79549782 Msa0428580:intron 30.0%
CAAGATCATCAAACATAAAG+AGG + chr3_2:79549852-79549871 None:intergenic 30.0%
!! TTAAGCATTGAAGTCTATAG+AGG + chr3_2:79549876-79549895 None:intergenic 30.0%
TAGACTTCAATGCTTAATCT+AGG - chr3_2:79549879-79549898 Msa0428580:intron 30.0%
AGACTTCAATGCTTAATCTA+GGG - chr3_2:79549880-79549899 Msa0428580:intron 30.0%
GAATAACAAAAAATTAGGGG+GGG + chr3_2:79549979-79549998 None:intergenic 30.0%
! CTTTTACCTTTACCTACAAT+TGG + chr3_2:79550110-79550129 None:intergenic 30.0%
TAAAAGTAGTAAGAAGACCA+AGG - chr3_2:79550124-79550143 Msa0428580:intron 30.0%
AGTTGTAGTTGAGATTCTTA+AGG - chr3_2:79550175-79550194 Msa0428580:CDS 30.0%
! TTTTGAATATGTCTTGATGC+AGG - chr3_2:79550284-79550303 Msa0428580:CDS 30.0%
! CTGAAGGAAGAAATTTTATC+AGG + chr3_2:79550353-79550372 None:intergenic 30.0%
CTGATAAAATTTCTTCCTTC+AGG - chr3_2:79550351-79550370 Msa0428580:CDS 30.0%
GATAAAATTTCTTCCTTCAG+GGG - chr3_2:79550353-79550372 Msa0428580:CDS 30.0%
ATAAAATTTCTTCCTTCAGG+GGG - chr3_2:79550354-79550373 Msa0428580:CDS 30.0%
! ATGTTGACAGGTAAACATTT+TGG - chr3_2:79550411-79550430 Msa0428580:CDS 30.0%
TTTAATGCATAGAAAAGCAG+AGG - chr3_2:79550440-79550459 Msa0428580:CDS 30.0%
TGCAGAAAATAGAATCTTGT+GGG - chr3_2:79550622-79550641 Msa0428580:five_prime_UTR 30.0%
! TAGAGCATCTATCATAGAAA+AGG + chr3_2:79550737-79550756 None:intergenic 30.0%
GAGAGAGAAATAAAAAAGGG+GGG + chr3_2:79546141-79546160 None:intergenic 35.0%
! GGAAAGATGAGATTTGGAAT+TGG + chr3_2:79546170-79546189 None:intergenic 35.0%
GAAAAGATTGAAAACCCTAG+CGG + chr3_2:79546223-79546242 None:intergenic 35.0%
! TTTTCCCTTTTCTTCATCCA+TGG - chr3_2:79546250-79546269 Msa0428580:CDS 35.0%
!!! TTTTGGTTTGGTATCGTCTA+GGG + chr3_2:79546285-79546304 None:intergenic 35.0%
!!! GTTTTCGACTTGTTTTGGTT+TGG + chr3_2:79546297-79546316 None:intergenic 35.0%
!! TCAACTTCTTCTTCTGGTTT+GGG + chr3_2:79546335-79546354 None:intergenic 35.0%
! TTCAACTTCTTCTTCTGGTT+TGG + chr3_2:79546336-79546355 None:intergenic 35.0%
GTTACTTCAACTTCTTCTTC+TGG + chr3_2:79546341-79546360 None:intergenic 35.0%
AGGCAATTAGACATACCATT+AGG + chr3_2:79546788-79546807 None:intergenic 35.0%
GTCTGTTTGTGTTTGTTCAT+TGG - chr3_2:79546869-79546888 Msa0428580:intron 35.0%
ATACTCACATGACCAGTATT+TGG - chr3_2:79546904-79546923 Msa0428580:intron 35.0%
!! TTGGAAGTCTTGTTTACATC+TGG - chr3_2:79546923-79546942 Msa0428580:intron 35.0%
ATTGCAGCTGTTAAGAACAA+TGG - chr3_2:79547003-79547022 Msa0428580:intron 35.0%
AGCGTGACTTATAATTCTAG+GGG - chr3_2:79547079-79547098 Msa0428580:CDS 35.0%
! TATCTAATTGACTCTACCTG+TGG - chr3_2:79547109-79547128 Msa0428580:CDS 35.0%
! TTTTATGACCATAAGTCCAC+AGG + chr3_2:79547128-79547147 None:intergenic 35.0%
! ACATGTGGGCTATAAGTAAT+TGG + chr3_2:79547218-79547237 None:intergenic 35.0%
CAATAACCAAAATGGTATGG+CGG + chr3_2:79547303-79547322 None:intergenic 35.0%
ATGCTCCATAGTATACTGTT+TGG - chr3_2:79547481-79547500 Msa0428580:intron 35.0%
TGCTCCATAGTATACTGTTT+GGG - chr3_2:79547482-79547501 Msa0428580:intron 35.0%
TCTTCCCAAACAGTATACTA+TGG + chr3_2:79547489-79547508 None:intergenic 35.0%
ACTGTTTGGGAAGAAAACAA+AGG - chr3_2:79547495-79547514 Msa0428580:intron 35.0%
GTCAGGTTAACAATCTAAAG+AGG - chr3_2:79547603-79547622 Msa0428580:intron 35.0%
ACATGATGATCTGATCCTTA+TGG - chr3_2:79547761-79547780 Msa0428580:intron 35.0%
ACATCTTCACAATTATTGGC+AGG - chr3_2:79547809-79547828 Msa0428580:intron 35.0%
AAAACAGAGAACAAGGGTAA+AGG - chr3_2:79547833-79547852 Msa0428580:intron 35.0%
AAACAAGAGTAGTGTGAAGA+AGG - chr3_2:79547920-79547939 Msa0428580:intron 35.0%
AAGTGGTACTTGAATTCCTT+TGG + chr3_2:79547972-79547991 None:intergenic 35.0%
TCTTCTTGCTGAAAAAGAAC+AGG - chr3_2:79548092-79548111 Msa0428580:intron 35.0%
TACATAACAATAGTGCACTG+CGG + chr3_2:79548551-79548570 None:intergenic 35.0%
AATGTCAGAACCTGATTGAA+AGG - chr3_2:79548577-79548596 Msa0428580:intron 35.0%
ATCACCATCACAACATTGAA+AGG + chr3_2:79548736-79548755 None:intergenic 35.0%
! TCAATGTTGTGATGGTGATT+TGG - chr3_2:79548737-79548756 Msa0428580:CDS 35.0%
TGTATTGTGGATTTCTTACC+TGG - chr3_2:79548765-79548784 Msa0428580:CDS 35.0%
! GATTTCTTACCTGGTTTGTA+AGG - chr3_2:79548774-79548793 Msa0428580:CDS 35.0%
!! TTTACAGAAAGTGTCATCCA+AGG + chr3_2:79548902-79548921 None:intergenic 35.0%
!! CATCCTTTTATTTCCTTTGG+AGG - chr3_2:79549252-79549271 Msa0428580:intron 35.0%
TCATAACAGAAATCCTCCAA+AGG + chr3_2:79549268-79549287 None:intergenic 35.0%
TCACTTATTTCACACACACT+AGG + chr3_2:79549304-79549323 None:intergenic 35.0%
!!! CTGAAGTTTGCTTTTTCTTC+TGG + chr3_2:79549372-79549391 None:intergenic 35.0%
TTCCAAAAAATCTGTGAAGG+AGG - chr3_2:79549564-79549583 Msa0428580:intron 35.0%
TCCAAAAAATCTGTGAAGGA+GGG - chr3_2:79549565-79549584 Msa0428580:intron 35.0%
!!! TGGAGTTTTTTCACTGCTTT+TGG + chr3_2:79549650-79549669 None:intergenic 35.0%
!!! GTTTTTTGTATCTTGGTTGC+AGG + chr3_2:79549739-79549758 None:intergenic 35.0%
GCAACCAAGATACAAAAAAC+TGG - chr3_2:79549739-79549758 Msa0428580:intron 35.0%
AAAGCAAGATACTAAGGGAA+AGG - chr3_2:79549768-79549787 Msa0428580:intron 35.0%
GACTTCAATGCTTAATCTAG+GGG - chr3_2:79549881-79549900 Msa0428580:intron 35.0%
TCAGAAAGAACTAAGTAAGC+AGG + chr3_2:79550085-79550104 None:intergenic 35.0%
TTCTTTCTGATGCCAATTGT+AGG - chr3_2:79550095-79550114 Msa0428580:intron 35.0%
TTACTCTTCATCTTCATCAC+TGG + chr3_2:79550580-79550599 None:intergenic 35.0%
CTGCAGAAAATAGAATCTTG+TGG - chr3_2:79550621-79550640 Msa0428580:five_prime_UTR 35.0%
GTCTATACAGGTTAAAGCTT+TGG - chr3_2:79550686-79550705 Msa0428580:five_prime_UTR 35.0%
! ATACAGGTTAAAGCTTTGGT+AGG - chr3_2:79550690-79550709 Msa0428580:five_prime_UTR 35.0%
! AAAGCTTTGGTAGGTATGTT+TGG - chr3_2:79550699-79550718 Msa0428580:five_prime_UTR 35.0%
AAATCTGTAATAAAGGGGTG+CGG + chr3_2:79550797-79550816 None:intergenic 35.0%
GTAGCCATGGATGAAGAAAA+GGG + chr3_2:79546257-79546276 None:intergenic 40.0%
! TTTGGTATCGTCTAGGGTTT+CGG + chr3_2:79546279-79546298 None:intergenic 40.0%
!!! GTTTTGGTTTGGTATCGTCT+AGG + chr3_2:79546286-79546305 None:intergenic 40.0%
!! GCTTCGTTTTCGACTTGTTT+TGG + chr3_2:79546302-79546321 None:intergenic 40.0%
!! TTCTGGTTTGGGTTCATCTT+TGG + chr3_2:79546324-79546343 None:intergenic 40.0%
TGAAGTAACTGAACAAGACG+CGG - chr3_2:79546352-79546371 Msa0428580:CDS 40.0%
!!! TGGTTATTTTTTCAGGGACG+TGG - chr3_2:79546743-79546762 Msa0428580:intron 40.0%
CAGCTCAAGGATATTCCTAA+TGG - chr3_2:79546770-79546789 Msa0428580:intron 40.0%
! TTTTCCTATGTTACGCGCAT+AGG - chr3_2:79546948-79546967 Msa0428580:intron 40.0%
GCGTGACTTATAATTCTAGG+GGG - chr3_2:79547080-79547099 Msa0428580:CDS 40.0%
! TTTTGTCCGCCATACCATTT+TGG - chr3_2:79547294-79547313 Msa0428580:CDS 40.0%
! CTTTTGGCGTGTTATGTGTA+TGG - chr3_2:79547342-79547361 Msa0428580:CDS 40.0%
GTATACTATGGAGCATATGC+AGG + chr3_2:79547477-79547496 None:intergenic 40.0%
!! TCAGGAATAGCAAAGGTGTT+AGG + chr3_2:79547577-79547596 None:intergenic 40.0%
!! ACACCTTTGCTATTCCTGAA+TGG - chr3_2:79547578-79547597 Msa0428580:intron 40.0%
! AGGAATATAGGCCAGTTTTC+TGG - chr3_2:79547623-79547642 Msa0428580:intron 40.0%
!!! CCAGTTTTCTGGTTATGTGT+GGG - chr3_2:79547634-79547653 Msa0428580:intron 40.0%
! TTATGTGTGGGCTGAAAATG+AGG - chr3_2:79547646-79547665 Msa0428580:intron 40.0%
GCAGGTTAATATCAGCCATA+AGG + chr3_2:79547779-79547798 None:intergenic 40.0%
GCAGGAAAAACAGAGAACAA+GGG - chr3_2:79547827-79547846 Msa0428580:intron 40.0%
TGCAAAGCTGTTGGAATTTC+TGG - chr3_2:79548044-79548063 Msa0428580:intron 40.0%
AACATCAGTAGTAGCATGTG+GGG + chr3_2:79548073-79548092 None:intergenic 40.0%
GAACATCAGTAGTAGCATGT+GGG + chr3_2:79548074-79548093 None:intergenic 40.0%
AGAACATCAGTAGTAGCATG+TGG + chr3_2:79548075-79548094 None:intergenic 40.0%
ATTGTGCTTGATCACGACTT+TGG - chr3_2:79548692-79548711 Msa0428580:intron 40.0%
GACACCTTTCAATGTTGTGA+TGG - chr3_2:79548729-79548748 Msa0428580:CDS 40.0%
TGAACTTGACCTTACAAACC+AGG + chr3_2:79548786-79548805 None:intergenic 40.0%
! GTGATGTATTTGAGGCTGAA+TGG + chr3_2:79548848-79548867 None:intergenic 40.0%
TAAGAAGCTGCAGAAAGAAC+TGG + chr3_2:79549211-79549230 None:intergenic 40.0%
AAAGCCTTCTGATGTTGAAG+AGG - chr3_2:79549408-79549427 Msa0428580:intron 40.0%
TCATCCTCTTCAACATCAGA+AGG + chr3_2:79549415-79549434 None:intergenic 40.0%
TTGCATCAGAAAGTTCAGCT+TGG + chr3_2:79549438-79549457 None:intergenic 40.0%
CACTGCAACATCTTCATCTT+GGG + chr3_2:79549470-79549489 None:intergenic 40.0%
GATGTTGCAGTGGCAAATAA+TGG - chr3_2:79549478-79549497 Msa0428580:intron 40.0%
! TAATGGAAGTGATAACGAGG+TGG - chr3_2:79549495-79549514 Msa0428580:intron 40.0%
! AATGGAAGTGATAACGAGGT+GGG - chr3_2:79549496-79549515 Msa0428580:intron 40.0%
!! GAAGTACTCTTGTGAGCTTT+TGG + chr3_2:79549547-79549566 None:intergenic 40.0%
!!! ACCCTCCTTCACAGATTTTT+TGG + chr3_2:79549569-79549588 None:intergenic 40.0%
! TGTGGATTTAGCTTCAGCTT+TGG + chr3_2:79549599-79549618 None:intergenic 40.0%
AGAGGTCTTCTTAACAGATG+TGG + chr3_2:79549617-79549636 None:intergenic 40.0%
! GTACTTGTTACTCTACTGGT+TGG - chr3_2:79549903-79549922 Msa0428580:intron 40.0%
CAGTTCAGCATGACAACTAA+AGG + chr3_2:79549944-79549963 None:intergenic 40.0%
CTGATGCCAATTGTAGGTAA+AGG - chr3_2:79550101-79550120 Msa0428580:intron 40.0%
GCAATTCATTACCAGTTTGC+AGG - chr3_2:79550232-79550251 Msa0428580:CDS 40.0%
! AAAAGATCGTACCAAGTTGG+CGG + chr3_2:79550329-79550348 None:intergenic 40.0%
GGAAAAAGATCGTACCAAGT+TGG + chr3_2:79550332-79550351 None:intergenic 40.0%
CAAGAAATTATTCCCCCTGA+AGG + chr3_2:79550369-79550388 None:intergenic 40.0%
ATGTCTGATGAGGAAGATGA+AGG - chr3_2:79550495-79550514 Msa0428580:CDS 40.0%
AACCTGTATAGACAGCTAAC+AGG + chr3_2:79550679-79550698 None:intergenic 40.0%
! GTGCGGGTTACATCTAAATA+TGG + chr3_2:79550780-79550799 None:intergenic 40.0%
! AATCTGTAATAAAGGGGTGC+GGG + chr3_2:79550796-79550815 None:intergenic 40.0%
GGTAGCCATGGATGAAGAAA+AGG + chr3_2:79546258-79546277 None:intergenic 45.0%
! TGATGCTGATGCTGATGATG+AGG - chr3_2:79546466-79546485 Msa0428580:intron 45.0%
GAAGATGCTGGTGAGAAGAA+GGG - chr3_2:79546494-79546513 Msa0428580:intron 45.0%
AGTAACCGGACTCTTCTTCT+CGG + chr3_2:79546540-79546559 None:intergenic 45.0%
GAACCTTCACCTTCGAAGTT+TGG - chr3_2:79546611-79546630 Msa0428580:intron 45.0%
CTTCCAAACTTCGAAGGTGA+AGG + chr3_2:79546617-79546636 None:intergenic 45.0%
CTTCACCTTCGAAGTTTGGA+AGG - chr3_2:79546615-79546634 Msa0428580:intron 45.0%
GAAGACCTTCCAAACTTCGA+AGG + chr3_2:79546623-79546642 None:intergenic 45.0%
GGAAGGTCTTCTTCCAGTAA+AGG - chr3_2:79546632-79546651 Msa0428580:CDS 45.0%
TGACTCTACCTGTGGACTTA+TGG - chr3_2:79547117-79547136 Msa0428580:CDS 45.0%
AGCATATGCAGGTTGTCATC+AGG + chr3_2:79547466-79547485 None:intergenic 45.0%
CCACCATTCAGGAATAGCAA+AGG + chr3_2:79547584-79547603 None:intergenic 45.0%
!! CCTTTGCTATTCCTGAATGG+TGG - chr3_2:79547581-79547600 Msa0428580:intron 45.0%
TGTTAACCTGACCACCATTC+AGG + chr3_2:79547595-79547614 None:intergenic 45.0%
!!! GCCAGTTTTCTGGTTATGTG+TGG - chr3_2:79547633-79547652 Msa0428580:intron 45.0%
CCCACACATAACCAGAAAAC+TGG + chr3_2:79547637-79547656 None:intergenic 45.0%
GGCAGGAAAAACAGAGAACA+AGG - chr3_2:79547826-79547845 Msa0428580:intron 45.0%
AGAGAACAAGGGTAAAGGAG+AGG - chr3_2:79547838-79547857 Msa0428580:intron 45.0%
!! TTCTCCAGGAGATTTGCTAG+AGG + chr3_2:79548477-79548496 None:intergenic 45.0%
TCATCCAAGGCAGAATGGTT+GGG + chr3_2:79548889-79548908 None:intergenic 45.0%
AAGTGTCATCCAAGGCAGAA+TGG + chr3_2:79548894-79548913 None:intergenic 45.0%
CCACTGCAACATCTTCATCT+TGG + chr3_2:79549471-79549490 None:intergenic 45.0%
CCAAGATGAAGATGTTGCAG+TGG - chr3_2:79549468-79549487 Msa0428580:intron 45.0%
TAACGAGGTGGGTAAATCAG+AGG - chr3_2:79549507-79549526 Msa0428580:intron 45.0%
AACGAGGTGGGTAAATCAGA+GGG - chr3_2:79549508-79549527 Msa0428580:intron 45.0%
AAGAGAAGCAGAATCCTGCT+CGG + chr3_2:79549701-79549720 None:intergenic 45.0%
AAGCAAAACTGCAAAGGCTG+CGG - chr3_2:79549795-79549814 Msa0428580:intron 45.0%
!! AGGGGTACTTGTTACTCTAC+TGG - chr3_2:79549899-79549918 Msa0428580:intron 45.0%
AAATTAGGGGGGGAACAAAC+AGG + chr3_2:79549969-79549988 None:intergenic 45.0%
GCATAGAAAAGCAGAGGTGA+AGG - chr3_2:79550446-79550465 Msa0428580:CDS 45.0%
TGATGAGGAAGATGAAGGTG+AGG - chr3_2:79550500-79550519 Msa0428580:CDS 45.0%
! GAGGAAGAAGCTGATAGTGA+TGG - chr3_2:79550519-79550538 Msa0428580:CDS 45.0%
! AAGCTGATAGTGATGGCGAT+GGG - chr3_2:79550526-79550545 Msa0428580:CDS 45.0%
CTCCTGTTAGCTGTCTATAC+AGG - chr3_2:79550674-79550693 Msa0428580:five_prime_UTR 45.0%
!!! TTGATTTTATTTTTTATTTT+TGG - chr3_2:79546004-79546023 Msa0428580:three_prime_UTR 5.0%
!!! ATATTTTTCTTTTTTATATA+TGG - chr3_2:79550037-79550056 Msa0428580:intron 5.0%
! TCTAGGGTTTCTCTTCCGCT+AGG - chr3_2:79546205-79546224 Msa0428580:three_prime_UTR 50.0%
CTAGGGTTTCTCTTCCGCTA+GGG - chr3_2:79546206-79546225 Msa0428580:three_prime_UTR 50.0%
! TGCTGATGCTGATGATGAGG+AGG - chr3_2:79546469-79546488 Msa0428580:intron 50.0%
! TGATGCTGATGATGAGGAGG+AGG - chr3_2:79546472-79546491 Msa0428580:intron 50.0%
GGAAGATGCTGGTGAGAAGA+AGG - chr3_2:79546493-79546512 Msa0428580:intron 50.0%
CTATCACTCGTCGGAGTAAC+CGG + chr3_2:79546554-79546573 None:intergenic 50.0%
! CTAGTTGGCCTATCACTCGT+CGG + chr3_2:79546563-79546582 None:intergenic 50.0%
GACGAGTGATAGGCCAACTA+GGG - chr3_2:79546562-79546581 Msa0428580:intron 50.0%
GTGATAGGCCAACTAGGGAA+AGG - chr3_2:79546567-79546586 Msa0428580:intron 50.0%
GCCAACTAGGGAAAGGAAGA+CGG - chr3_2:79546574-79546593 Msa0428580:intron 50.0%
ACCGTCTTCCTTTCCCTAGT+TGG + chr3_2:79546578-79546597 None:intergenic 50.0%
AACTAGGGAAAGGAAGACGG+TGG - chr3_2:79546577-79546596 Msa0428580:intron 50.0%
TGTGCCTATGCGCGTAACAT+AGG + chr3_2:79546955-79546974 None:intergenic 50.0%
GCTATTCCTGAATGGTGGTC+AGG - chr3_2:79547586-79547605 Msa0428580:intron 50.0%
GGAACTGTCTGCAAAGCTGT+TGG - chr3_2:79548035-79548054 Msa0428580:intron 50.0%
GCAACCTCTAGCAAATCTCC+TGG - chr3_2:79548470-79548489 Msa0428580:intron 50.0%
TCCTGGAGAAACACCTGCAA+AGG - chr3_2:79548487-79548506 Msa0428580:intron 50.0%
ACCTTTGCAGGTGTTTCTCC+AGG + chr3_2:79548491-79548510 None:intergenic 50.0%
CCACGTGCAACCTTTCAATC+AGG + chr3_2:79548590-79548609 None:intergenic 50.0%
CCTGATTGAAAGGTTGCACG+TGG - chr3_2:79548587-79548606 Msa0428580:intron 50.0%
TACTCCCAACCATTCTGCCT+TGG - chr3_2:79548882-79548901 Msa0428580:intron 50.0%
GTCATCCAAGGCAGAATGGT+TGG + chr3_2:79548890-79548909 None:intergenic 50.0%
! GCTTTTGGCAGCTTTTGCAG+AGG + chr3_2:79549635-79549654 None:intergenic 50.0%
!! GGTTGCAGGTTGATCTGACT+TGG + chr3_2:79549725-79549744 None:intergenic 50.0%
GGCTGCAAGCAAAACTGCAA+AGG - chr3_2:79549789-79549808 Msa0428580:intron 50.0%
AACTGCAAAGGCTGCGGTTA+AGG - chr3_2:79549801-79549820 Msa0428580:intron 50.0%
AAGGCTGCGGTTAAGGATCA+AGG - chr3_2:79549808-79549827 Msa0428580:intron 50.0%
TGTGATATCCTCCGCCAACT+TGG - chr3_2:79550315-79550334 Msa0428580:CDS 50.0%
! GAAGCTGATAGTGATGGCGA+TGG - chr3_2:79550525-79550544 Msa0428580:CDS 50.0%
! AGCTGATAGTGATGGCGATG+GGG - chr3_2:79550527-79550546 Msa0428580:CDS 50.0%
GATGTCGATGCGGGTAAAGA+TGG - chr3_2:79550549-79550568 Msa0428580:CDS 50.0%
! GTCTAGGGTTTCGGTAGCCA+TGG + chr3_2:79546270-79546289 None:intergenic 55.0%
GATGAGGAGGAGGAAGATGC+TGG - chr3_2:79546482-79546501 Msa0428580:intron 55.0%
GTCGTCCGAGAAGAAGAGTC+CGG - chr3_2:79546532-79546551 Msa0428580:intron 55.0%
CGGTTACTCCGACGAGTGAT+AGG - chr3_2:79546552-79546571 Msa0428580:intron 55.0%
CGACGAGTGATAGGCCAACT+AGG - chr3_2:79546561-79546580 Msa0428580:intron 55.0%
GGTGGGTAAATCAGAGGGAG+AGG - chr3_2:79549513-79549532 Msa0428580:intron 55.0%
AGACCAAGGTAGAGCCGAGT+AGG - chr3_2:79550138-79550157 Msa0428580:intron 55.0%
! AGATCGTACCAAGTTGGCGG+AGG + chr3_2:79550326-79550345 None:intergenic 55.0%
GGGACGTGGTACTCAGCTCA+AGG - chr3_2:79546757-79546776 Msa0428580:intron 60.0%
CTGCCTACTCGGCTCTACCT+TGG + chr3_2:79550144-79550163 None:intergenic 60.0%
CAAGGTAGAGCCGAGTAGGC+AGG - chr3_2:79550142-79550161 Msa0428580:intron 60.0%
GCGTGCATGTCCTGCCTACT+CGG + chr3_2:79550155-79550174 None:intergenic 60.0%
TGGCGATGGGGATGTCGATG+CGG - chr3_2:79550539-79550558 Msa0428580:CDS 60.0%
GGCGATGGGGATGTCGATGC+GGG - chr3_2:79550540-79550559 Msa0428580:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 79545927 79550914 79545927 ID=Msa0428580;Name=Msa0428580
chr3_2 mRNA 79545927 79550914 79545927 ID=Msa0428580-mRNA-1;Parent=Msa0428580;Name=Msa0428580-mRNA-1;_AED=0.08;_eAED=0.08;_QI=342|1|1|1|1|1|11|315|531
chr3_2 exon 79545927 79546420 79545927 ID=Msa0428580-mRNA-1:exon:21481;Parent=Msa0428580-mRNA-1
chr3_2 exon 79546505 79546535 79546505 ID=Msa0428580-mRNA-1:exon:21480;Parent=Msa0428580-mRNA-1
chr3_2 exon 79546627 79546724 79546627 ID=Msa0428580-mRNA-1:exon:21479;Parent=Msa0428580-mRNA-1
chr3_2 exon 79547012 79547468 79547012 ID=Msa0428580-mRNA-1:exon:21478;Parent=Msa0428580-mRNA-1
chr3_2 exon 79548333 79548395 79548333 ID=Msa0428580-mRNA-1:exon:21477;Parent=Msa0428580-mRNA-1
chr3_2 exon 79548728 79548808 79548728 ID=Msa0428580-mRNA-1:exon:21476;Parent=Msa0428580-mRNA-1
chr3_2 exon 79548900 79549010 79548900 ID=Msa0428580-mRNA-1:exon:21475;Parent=Msa0428580-mRNA-1
chr3_2 exon 79549174 79549233 79549174 ID=Msa0428580-mRNA-1:exon:21474;Parent=Msa0428580-mRNA-1
chr3_2 exon 79549325 79549404 79549325 ID=Msa0428580-mRNA-1:exon:21473;Parent=Msa0428580-mRNA-1
chr3_2 exon 79550050 79550083 79550050 ID=Msa0428580-mRNA-1:exon:21472;Parent=Msa0428580-mRNA-1
chr3_2 exon 79550171 79550914 79550171 ID=Msa0428580-mRNA-1:exon:21471;Parent=Msa0428580-mRNA-1
chr3_2 five_prime_UTR 79550573 79550914 79550573 ID=Msa0428580-mRNA-1:five_prime_utr;Parent=Msa0428580-mRNA-1
chr3_2 CDS 79550171 79550572 79550171 ID=Msa0428580-mRNA-1:cds;Parent=Msa0428580-mRNA-1
chr3_2 CDS 79550050 79550083 79550050 ID=Msa0428580-mRNA-1:cds;Parent=Msa0428580-mRNA-1
chr3_2 CDS 79549325 79549404 79549325 ID=Msa0428580-mRNA-1:cds;Parent=Msa0428580-mRNA-1
chr3_2 CDS 79549174 79549233 79549174 ID=Msa0428580-mRNA-1:cds;Parent=Msa0428580-mRNA-1
chr3_2 CDS 79548900 79549010 79548900 ID=Msa0428580-mRNA-1:cds;Parent=Msa0428580-mRNA-1
chr3_2 CDS 79548728 79548808 79548728 ID=Msa0428580-mRNA-1:cds;Parent=Msa0428580-mRNA-1
chr3_2 CDS 79548333 79548395 79548333 ID=Msa0428580-mRNA-1:cds;Parent=Msa0428580-mRNA-1
chr3_2 CDS 79547012 79547468 79547012 ID=Msa0428580-mRNA-1:cds;Parent=Msa0428580-mRNA-1
chr3_2 CDS 79546627 79546724 79546627 ID=Msa0428580-mRNA-1:cds;Parent=Msa0428580-mRNA-1
chr3_2 CDS 79546505 79546535 79546505 ID=Msa0428580-mRNA-1:cds;Parent=Msa0428580-mRNA-1
chr3_2 CDS 79546242 79546420 79546242 ID=Msa0428580-mRNA-1:cds;Parent=Msa0428580-mRNA-1
chr3_2 three_prime_UTR 79545927 79546241 79545927 ID=Msa0428580-mRNA-1:three_prime_utr;Parent=Msa0428580-mRNA-1
Gene Sequence

>Msa0428580

ATGGCTACCGAAACCCTAGACGATACCAAACCAAAACAAGTCGAAAACGAAGCCAAAGATGAACCCAAACCAGAAGAAGAAGTTGAAGTAACTGAACAAGACGCGGAAATTGCTGAATCTGATGAGAAGAAAGAGATCGATGAACATGAAGATTCCGAGAAAGATGATGATGATGAAGATGGAGACGAAGATGATGCTGATGCTGATGCTGATGATGAGGAGGAGGAAGATGCTGGTGAGAAGAAGGGTGTGAAGAAAGAAGCGTCGTCCGAGAAGAAGAGTCCGGTTACTCCGACGAGTGATAGGCCAACTAGGGAAAGGAAGACGGTGGAGCGATACTCTGAACCTTCACCTTCGAAGTTTGGAAGGTCTTCTTCCAGTAAAGGACTGATAATTGAAAAGGGACGTGGTACTCAGCTCAAGGATATTCCTAATGTGGCTTTCAAGTTGTCAAAGAGAAAACCTGATGACAACCTGCATATGCTCCATAGTATACTGTTTGGGAAGAAAACAAAGGTTAACAATCTAAAGAGGAATATAGGCCAGTTTTCTGGTTATGTGTGGGCTGAAAATGAGGAAAAACAGAGAACAAGGGTAAAGGAGAGGATTGACAAATGTGTGAAAGAAAAATTGATTGTCTTCTGCGATGTTCTTAATATTCCAATAAACAAGAGTAGTGTGAAGAAGGAGGAACTGTCTGCAAAGCTGTTGGAATTTCTGGAGTCCCCACATGCTACTACTGATGTTCTTCTTGCTGAAAAAGAACAGAAAGGTAAGAAGCGAGTTAGAAAAGCAACCTCTAGCAAATCTCCTGGAGAAACACCTGCAAAGAAGAAAAAGCAAACTTCAGAATCTGGAAAAAAGCGAAAGCCTTCTGATGTTGAAGAGGATGACCAAGCTGAACTTTCTGATGCAAAAGATGAGTCCCAAGATGAAGATGTTGCAGTGGCAAATAATGGAAGTGATAACGAGGTGGGTAAATCAGAGGGAGAGGAAGATACACCAAAAGCTCACAAGAGTACTTCCAAAAAATCTGTGAAGGAGGGTTCAGTTGCCAAAGCTGAAGCTAAATCCACATCTGTTAAGAAGACCTCTGCAAAAGCTGCCAAAAGCAGTGAAAAAACTCCAAAAAAATCAATACCAAAAAAATCAATTACCGAGCAGGATTCTGCTTCTCTTTCCAAGTCAGATCAACCTGCAACCAAGATACAAAAAACTGGAAAGGAAAAGCAAGATACTAAGGGAAAGGCTGCAAGCAAAACTGCAAAGGCTGCGGTTAAGGATCAAGGTAAAGGTAAAAGTAGTAAGAAGACCAAGGTAGAGCCGAGTAGGCAGGACATGCACGCAGTTGTAGTTGAGATTCTTAAGGAAGTAGATTTCAATAAGGCAACTTTGTGTGATATCCTCCGCCAACTTGGTAAACATTTTGGCCTTGATTTAATGCATAGAAAAGCAGAGGTGAAGGATATCATCACAGATGTAATTAATAATATGTCTGATGAGGAAGATGAAGGTGAGGAAGAAGCTGATAGTGATGGCGATGGGGATGTCGATGCGGGTAAAGATGGCGACGCCAGTGATGAAGATGAAGAGTAA

Protein sequence

>Msa0428580

MATETLDDTKPKQVENEAKDEPKPEEEVEVTEQDAEIAESDEKKEIDEHEDSEKDDDDEDGDEDDADADADDEEEEDAGEKKGVKKEASSEKKSPVTPTSDRPTRERKTVERYSEPSPSKFGRSSSSKGLIIEKGRGTQLKDIPNVAFKLSKRKPDDNLHMLHSILFGKKTKVNNLKRNIGQFSGYVWAENEEKQRTRVKERIDKCVKEKLIVFCDVLNIPINKSSVKKEELSAKLLEFLESPHATTDVLLAEKEQKGKKRVRKATSSKSPGETPAKKKKQTSESGKKRKPSDVEEDDQAELSDAKDESQDEDVAVANNGSDNEVGKSEGEEDTPKAHKSTSKKSVKEGSVAKAEAKSTSVKKTSAKAAKSSEKTPKKSIPKKSITEQDSASLSKSDQPATKIQKTGKEKQDTKGKAASKTAKAAVKDQGKGKSSKKTKVEPSRQDMHAVVVEILKEVDFNKATLCDILRQLGKHFGLDLMHRKAEVKDIITDVINNMSDEEDEGEEEADSDGDGDVDAGKDGDASDEDEE*