Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0241630 | KEH37091.1 | 95.000 | 380 | 19 | 0 | 1 | 380 | 1 | 380 | 0.0 | 695 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0241630 | A0A072V637 | 95.000 | 380 | 19 | 0 | 1 | 380 | 1 | 380 | 0.0 | 695 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030160 | Msa0241630 | 0.813987 | 1.937475e-51 | -8.615850e-47 |
| Msa0103250 | Msa0241630 | 0.801617 | 8.275488e-49 | -8.615850e-47 |
| Msa0106620 | Msa0241630 | 0.814538 | 1.463929e-51 | -8.615850e-47 |
| Msa0106710 | Msa0241630 | 0.800206 | 1.606415e-48 | -8.615850e-47 |
| Msa0192480 | Msa0241630 | 0.817644 | 2.963133e-52 | -8.615850e-47 |
| Msa0223230 | Msa0241630 | 0.850210 | 1.967355e-60 | -8.615850e-47 |
| Msa0237210 | Msa0241630 | 0.802175 | 6.353966e-49 | -8.615850e-47 |
| Msa0241630 | Msa0274980 | 0.817082 | 3.965562e-52 | -8.615850e-47 |
| Msa0241630 | Msa0279710 | 0.928439 | 2.881791e-92 | -8.615850e-47 |
| Msa0241630 | Msa0300320 | 0.801314 | 9.546549e-49 | -8.615850e-47 |
| Msa0241630 | Msa0315690 | 0.817802 | 2.730258e-52 | -8.615850e-47 |
| Msa0241630 | Msa0320500 | 0.804735 | 1.872578e-49 | -8.615850e-47 |
| Msa0241630 | Msa0322560 | 0.980955 | 1.985660e-151 | -8.615850e-47 |
| Msa0241630 | Msa0341690 | 0.802075 | 6.664779e-49 | -8.615850e-47 |
| Msa0241630 | Msa0361910 | 0.804783 | 1.830192e-49 | -8.615850e-47 |
| Msa0241630 | Msa0378970 | 0.802281 | 6.043020e-49 | -8.615850e-47 |
| Msa0241630 | Msa0428580 | 0.802962 | 4.373749e-49 | -8.615850e-47 |
| Msa0241630 | Msa0474940 | 0.801422 | 9.073893e-49 | -8.615850e-47 |
| Msa0241630 | Msa0534720 | 0.801807 | 7.562949e-49 | -8.615850e-47 |
| Msa0241630 | Msa0590830 | 0.803460 | 3.449134e-49 | -8.615850e-47 |
| Msa0241630 | Msa0592080 | 0.803163 | 3.973622e-49 | -8.615850e-47 |
| Msa0241630 | Msa0624900 | 0.801470 | 8.870628e-49 | -8.615850e-47 |
| Msa0241630 | Msa1145810 | 0.824277 | 8.807750e-54 | -8.615850e-47 |
| Msa0241630 | Msa1155170 | -0.805828 | 1.105425e-49 | -8.615850e-47 |
| Msa0241630 | Msa1186020 | 0.806586 | 7.654720e-50 | -8.615850e-47 |
| Msa0241630 | Msa1219000 | 0.825620 | 4.244090e-54 | -8.615850e-47 |
| Msa0241630 | Msa1332760 | 0.833130 | 6.364252e-56 | -8.615850e-47 |
| Msa0241630 | Msa1440310 | 0.820533 | 6.522733e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0241630 | MtrunA17_Chr2g0293221 | 94.737 | 380 | 19 | 1 | 1 | 380 | 1 | 379 | 0.0 | 689 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0241630 | AT1G19980.1 | 33.957 | 374 | 191 | 9 | 14 | 377 | 9 | 336 | 5.79e-56 | 187 |
Find 75 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATGTGCAACGATTTAAAA+AGG | 0.174149 | 2_2:+17340446 | None:intergenic |
| GTCTCTGTGGTGGGAATAAT+TGG | 0.175468 | 2_2:+17339617 | None:intergenic |
| GTGGAATCAATTTAATAAAA+TGG | 0.179907 | 2_2:-17340718 | Msa0241630:CDS |
| CAAAACTAAAGTCATCTTTA+AGG | 0.195780 | 2_2:-17339562 | Msa0241630:CDS |
| TACCCTGCTCAGTTCATCTT+TGG | 0.230573 | 2_2:+17340815 | None:intergenic |
| TTCTGATATTAAACGTTATA+AGG | 0.239982 | 2_2:-17342225 | Msa0241630:CDS |
| CTTAAAGATGACTTTAGTTT+TGG | 0.240955 | 2_2:+17339563 | None:intergenic |
| GAATTCCAACGGTCGACTTT+TGG | 0.257272 | 2_2:+17342512 | None:intergenic |
| TCTACGGCGTTTGAAGGTTT+TGG | 0.295363 | 2_2:+17342389 | None:intergenic |
| CAAACTATTCTCTAGCTAAA+AGG | 0.301161 | 2_2:+17339220 | None:intergenic |
| AGAAAGTAAAGTAGCTGATA+TGG | 0.308879 | 2_2:-17340559 | Msa0241630:CDS |
| GCAGTCTGAAAATATTAAAA+AGG | 0.342062 | 2_2:-17340601 | Msa0241630:CDS |
| GTCAGGACTCTCAACGGAAT+TGG | 0.342907 | 2_2:-17340505 | Msa0241630:CDS |
| ACTGTTCTCTTCCAACTTCA+AGG | 0.343289 | 2_2:-17339588 | Msa0241630:CDS |
| AATCTGTAGAGCGTGGAAAT+TGG | 0.346900 | 2_2:-17342367 | Msa0241630:CDS |
| GGTTCAGATGATGAAGAATC+AGG | 0.362544 | 2_2:-17342324 | Msa0241630:CDS |
| GTGAGCTTTCTGTTTGGAAT+AGG | 0.362590 | 2_2:-17339311 | Msa0241630:three_prime_UTR |
| AGTAGATATTATTGTGTGTT+TGG | 0.367439 | 2_2:-17339496 | Msa0241630:three_prime_UTR |
| AAAACATACTTCTCCATTCA+AGG | 0.368522 | 2_2:+17341020 | None:intergenic |
| ATCTGTAGAGCGTGGAAATT+GGG | 0.376472 | 2_2:-17342366 | Msa0241630:CDS |
| AATACAAGACTGAGTGTGTT+TGG | 0.381842 | 2_2:+17339378 | None:intergenic |
| AGTTCATCTTTGGTTTCATC+AGG | 0.393750 | 2_2:+17340825 | None:intergenic |
| AAGTTGGAAGAGAACAGTTT+GGG | 0.411264 | 2_2:+17339593 | None:intergenic |
| AGAGAGTACAAAGGATGATT+TGG | 0.418152 | 2_2:-17341082 | Msa0241630:CDS |
| GAAGTTGGAAGAGAACAGTT+TGG | 0.431216 | 2_2:+17339592 | None:intergenic |
| CTCTTGCCAGTATCCTTCAA+TGG | 0.432868 | 2_2:+17340915 | None:intergenic |
| CGCATCGTGTGATGCAGAAT+AGG | 0.438445 | 2_2:+17342425 | None:intergenic |
| TAAACAAGAAGAAGTAGAAA+AGG | 0.440876 | 2_2:-17340667 | Msa0241630:CDS |
| GGAACGCCATTGAAGGATAC+TGG | 0.442386 | 2_2:-17340921 | Msa0241630:CDS |
| TATCCTTCAATGGCGTTCCT+TGG | 0.442878 | 2_2:+17340925 | None:intergenic |
| ATCCACAAATTTCTCAGAAA+AGG | 0.443545 | 2_2:-17340322 | Msa0241630:intron |
| CTGGAAAAGTTGAGAGTAGC+AGG | 0.443901 | 2_2:-17340410 | Msa0241630:CDS |
| ACAGATTCTACGGCGTTTGA+AGG | 0.453164 | 2_2:+17342383 | None:intergenic |
| AGCTAAGGCTGATTTGATGA+TGG | 0.458362 | 2_2:-17342049 | Msa0241630:CDS |
| TGATTAGTGAGCTTTCTGTT+TGG | 0.467706 | 2_2:-17339317 | Msa0241630:three_prime_UTR |
| TTCTGAGAAATTTGTGGATG+TGG | 0.488850 | 2_2:+17340326 | None:intergenic |
| TATTGTGTGTTTGGAACCAT+CGG | 0.490823 | 2_2:-17339487 | Msa0241630:three_prime_UTR |
| TGATGTTTGAAGAGAAGAAA+CGG | 0.503982 | 2_2:-17342083 | Msa0241630:CDS |
| CTTCTTCTTCCCACTACTTG+AGG | 0.508521 | 2_2:+17340881 | None:intergenic |
| AAACCAAAGATGAACTGAGC+AGG | 0.509542 | 2_2:-17340818 | Msa0241630:CDS |
| TCTCTGTGGTGGGAATAATT+GGG | 0.509585 | 2_2:+17339618 | None:intergenic |
| AAGAAAGGAACCTCAAGTAG+TGG | 0.509613 | 2_2:-17340891 | Msa0241630:CDS |
| GAGTACAAAGGATGATTTGG+AGG | 0.515610 | 2_2:-17341079 | Msa0241630:CDS |
| TCTTGTATTTGTTTATTGCA+TGG | 0.516464 | 2_2:-17339364 | Msa0241630:three_prime_UTR |
| GGACCAAGGAACGCCATTGA+AGG | 0.522380 | 2_2:-17340928 | Msa0241630:CDS |
| AAAAGAAGCTTGAAGAGGAA+AGG | 0.524428 | 2_2:-17339644 | Msa0241630:CDS |
| TACATAATTCAGCTCAAAAG+TGG | 0.525721 | 2_2:+17339252 | None:intergenic |
| AAACATACTTGTTTCTAGCA+TGG | 0.526753 | 2_2:-17340631 | Msa0241630:CDS |
| GATGTGGAAGCATGTTCATC+AGG | 0.527344 | 2_2:+17340342 | None:intergenic |
| GCTAAGGCTGATTTGATGAT+GGG | 0.535120 | 2_2:-17342048 | Msa0241630:CDS |
| TCCACGCTCTACAGATTCTA+CGG | 0.536952 | 2_2:+17342373 | None:intergenic |
| AGATTAAACAAGGAAATGTC+AGG | 0.539359 | 2_2:-17340522 | Msa0241630:CDS |
| GATACTGGCAAGAGGAAGAA+AGG | 0.541904 | 2_2:-17340906 | Msa0241630:CDS |
| ACGGTTGCTTGAAGAAGCTA+AGG | 0.550968 | 2_2:-17342064 | Msa0241630:CDS |
| AAAATTGCAGAATCAACGCT+GGG | 0.563347 | 2_2:-17342249 | Msa0241630:CDS |
| TAAAATTGCAGAATCAACGC+TGG | 0.563506 | 2_2:-17342250 | Msa0241630:CDS |
| TTGAGAAAGGTAATCAAACC+CGG | 0.569015 | 2_2:+17341047 | None:intergenic |
| AAACGCCAAAAGTCGACCGT+TGG | 0.590442 | 2_2:-17342517 | None:intergenic |
| AGAAAGGAACCTCAAGTAGT+GGG | 0.601571 | 2_2:-17340890 | Msa0241630:CDS |
| AGGAGAAAAGAAGCTTGAAG+AGG | 0.617154 | 2_2:-17339649 | Msa0241630:CDS |
| AGTTTGGGAGTCTCTGTGGT+GGG | 0.621503 | 2_2:+17339608 | None:intergenic |
| TTATAAGGATCAAATTACTC+AGG | 0.623873 | 2_2:-17342210 | Msa0241630:intron |
| AACCAAAGATGAACTGAGCA+GGG | 0.624655 | 2_2:-17340817 | Msa0241630:CDS |
| GCCGTAGAATCTGTAGAGCG+TGG | 0.627881 | 2_2:-17342374 | Msa0241630:CDS |
| GGAAATGTCAGGACTCTCAA+CGG | 0.628067 | 2_2:-17340511 | Msa0241630:CDS |
| CAGTTTGGGAGTCTCTGTGG+TGG | 0.629969 | 2_2:+17339607 | None:intergenic |
| GGCCACACCGTGAAAACCGA+TGG | 0.632545 | 2_2:+17339471 | None:intergenic |
| ACATCGAGTACTAGTGACTC+TGG | 0.637582 | 2_2:-17340429 | Msa0241630:CDS |
| AAGAAGAAGAAGAATTCCAA+CGG | 0.639833 | 2_2:+17342501 | None:intergenic |
| CATACTTGTTTCTAGCATGG+AGG | 0.643179 | 2_2:-17340628 | Msa0241630:CDS |
| GAACAGTTTGGGAGTCTCTG+TGG | 0.665247 | 2_2:+17339604 | None:intergenic |
| TTTGACTGCAGAGAGTACAA+AGG | 0.671398 | 2_2:-17341091 | Msa0241630:intron |
| CATTGAAGGATACTGGCAAG+AGG | 0.671920 | 2_2:-17340914 | Msa0241630:CDS |
| GTCACTTTATAACAGGACCA+AGG | 0.685155 | 2_2:-17340942 | Msa0241630:intron |
| GTTAAAGAGAGCTTAACGTG+CGG | 0.748635 | 2_2:+17339407 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAAAGGTTTTTTTAA+TGG | - | chr2_2:17339600-17339619 | Msa0241630:CDS | 10.0% |
| !!! | AAAAAAAAGGTTTTTTTAAT+GGG | - | chr2_2:17339601-17339620 | Msa0241630:CDS | 10.0% |
| !!! | TTTCATGTTTTTTTATTAAT+TGG | - | chr2_2:17339771-17339790 | Msa0241630:intron | 10.0% |
| !!! | TATTCAACAATTTCAATTTT+AGG | - | chr2_2:17339555-17339574 | Msa0241630:CDS | 15.0% |
| !!! | ATTCAACAATTTCAATTTTA+GGG | - | chr2_2:17339556-17339575 | Msa0241630:CDS | 15.0% |
| !!! | TTTAAGTTGTTGAAAAAAAA+AGG | - | chr2_2:17339588-17339607 | Msa0241630:CDS | 15.0% |
| !! | TAAAAAAACATGAAAGAAAA+AGG | + | chr2_2:17339766-17339785 | None:intergenic | 15.0% |
| !!! | ATGTTTTTTTATTAATTGGT+TGG | - | chr2_2:17339775-17339794 | Msa0241630:intron | 15.0% |
| !! | GAATATTTGTATAGAAATTT+AGG | - | chr2_2:17339949-17339968 | Msa0241630:intron | 15.0% |
| !!! | TGGATTGTTTTATAAAATAA+TGG | - | chr2_2:17340038-17340057 | Msa0241630:intron | 15.0% |
| !! | AATAGAAATGACTAATAAAA+AGG | + | chr2_2:17340761-17340780 | None:intergenic | 15.0% |
| !! | TTCTGATATTAAACGTTATA+AGG | - | chr2_2:17339515-17339534 | Msa0241630:three_prime_UTR | 20.0% |
| !!! | AGAATCTTCTATTTTGAAAT+GGG | - | chr2_2:17339727-17339746 | Msa0241630:intron | 20.0% |
| !!! | TAATTGGTTGGTATTTAAAT+AGG | - | chr2_2:17339787-17339806 | Msa0241630:intron | 20.0% |
| !! | ACTGTTAGTCAAATTATTAT+CGG | - | chr2_2:17340181-17340200 | Msa0241630:intron | 20.0% |
| !! | AAAAACACTAATACTTTGTT+TGG | + | chr2_2:17340555-17340574 | None:intergenic | 20.0% |
| !!! | ATTGTTATAATTAGCTTTGT+TGG | - | chr2_2:17340608-17340627 | Msa0241630:CDS | 20.0% |
| !!! | TATGTTTTCTGATATTTATC+AGG | - | chr2_2:17340735-17340754 | Msa0241630:CDS | 20.0% |
| !! | GTGGAATCAATTTAATAAAA+TGG | - | chr2_2:17341022-17341041 | Msa0241630:intron | 20.0% |
| !! | AGAAACAAAAAGATTAAACA+AGG | - | chr2_2:17341208-17341227 | Msa0241630:intron | 20.0% |
| !! | ATCATTTAATACATACAGTA+CGG | + | chr2_2:17341481-17341500 | None:intergenic | 20.0% |
| ! | TTATAAGGATCAAATTACTC+AGG | - | chr2_2:17339530-17339549 | Msa0241630:three_prime_UTR | 25.0% |
| !!! | GAGAATCTTCTATTTTGAAA+TGG | - | chr2_2:17339726-17339745 | Msa0241630:intron | 25.0% |
| !!! | TTCTATTTTGAAATGGGTTT+TGG | - | chr2_2:17339733-17339752 | Msa0241630:intron | 25.0% |
| !!! | TCTATTTTGAAATGGGTTTT+GGG | - | chr2_2:17339734-17339753 | Msa0241630:intron | 25.0% |
| ! | TTCTATAACCCAAAATCAAA+GGG | + | chr2_2:17339830-17339849 | None:intergenic | 25.0% |
| ! | TTTCTATAACCCAAAATCAA+AGG | + | chr2_2:17339831-17339850 | None:intergenic | 25.0% |
| ! | TTTGATGTTATGTTCCTTAT+CGG | - | chr2_2:17339923-17339942 | Msa0241630:intron | 25.0% |
| ! | TACAAATATTCAAACCGATA+AGG | + | chr2_2:17339940-17339959 | None:intergenic | 25.0% |
| ! | AAGGTAAGTCTTAATGTAAT+TGG | + | chr2_2:17340116-17340135 | None:intergenic | 25.0% |
| ! | TAATTTCACTTTCTAAGCTA+AGG | + | chr2_2:17340247-17340266 | None:intergenic | 25.0% |
| ! | TGAAATTATCCTATCAATCT+TGG | - | chr2_2:17340259-17340278 | Msa0241630:intron | 25.0% |
| ! | GAAATACCTTATTGTTTGAT+CGG | - | chr2_2:17340404-17340423 | Msa0241630:CDS | 25.0% |
| ! | TAAAAACCGATCAAACAATA+AGG | + | chr2_2:17340413-17340432 | None:intergenic | 25.0% |
| ! | CAAAATTAGTAAATTCAACG+TGG | - | chr2_2:17340527-17340546 | Msa0241630:CDS | 25.0% |
| ! | TAAACAAGAAGAAGTAGAAA+AGG | - | chr2_2:17341073-17341092 | Msa0241630:CDS | 25.0% |
| ! | GCAGTCTGAAAATATTAAAA+AGG | - | chr2_2:17341139-17341158 | Msa0241630:intron | 25.0% |
| ! | GATTTAAAAAGGGTTTAACT+TGG | + | chr2_2:17341286-17341305 | None:intergenic | 25.0% |
| ! | TATTAAATGATTCTCTTCTC+AGG | - | chr2_2:17341490-17341509 | Msa0241630:intron | 25.0% |
| ! | TATAATGCAACTCACTAATT+CGG | + | chr2_2:17341925-17341944 | None:intergenic | 25.0% |
| !!! | CTTAAAGATGACTTTAGTTT+TGG | + | chr2_2:17342180-17342199 | None:intergenic | 25.0% |
| ! | CAAAACTAAAGTCATCTTTA+AGG | - | chr2_2:17342178-17342197 | Msa0241630:intron | 25.0% |
| ! | AGTAGATATTATTGTGTGTT+TGG | - | chr2_2:17342244-17342263 | Msa0241630:CDS | 25.0% |
| ! | TCTTGTATTTGTTTATTGCA+TGG | - | chr2_2:17342376-17342395 | Msa0241630:CDS | 25.0% |
| AAGAAGAAGAAGAATTCCAA+CGG | + | chr2_2:17339242-17339261 | None:intergenic | 30.0% | |
| GGAAAAAATATTCAGCACTT+TGG | - | chr2_2:17339395-17339414 | Msa0241630:three_prime_UTR | 30.0% | |
| TGATGTTTGAAGAGAAGAAA+CGG | - | chr2_2:17339657-17339676 | Msa0241630:intron | 30.0% | |
| ! | TGGTTGGTATTTAAATAGGT+TGG | - | chr2_2:17339791-17339810 | Msa0241630:intron | 30.0% |
| ! | GGTTGGTATTTAAATAGGTT+GGG | - | chr2_2:17339792-17339811 | Msa0241630:intron | 30.0% |
| !! | TAAATAGGTTGGGTTTTTGA+TGG | - | chr2_2:17339802-17339821 | Msa0241630:intron | 30.0% |
| !! | AAATAGGTTGGGTTTTTGAT+GGG | - | chr2_2:17339803-17339822 | Msa0241630:intron | 30.0% |
| !!! | TGTCTTGTTGTTTTTGTTCT+TGG | - | chr2_2:17339886-17339905 | Msa0241630:intron | 30.0% |
| AATCCAACAAGAATAACAAC+AGG | + | chr2_2:17340024-17340043 | None:intergenic | 30.0% | |
| TTATCCTATCAATCTTGGAA+TGG | - | chr2_2:17340264-17340283 | Msa0241630:intron | 30.0% | |
| TAACTAAAAACACACGTTCT+AGG | + | chr2_2:17340471-17340490 | None:intergenic | 30.0% | |
| TCTCAATATCACTTCCAAAT+TGG | - | chr2_2:17340494-17340513 | Msa0241630:CDS | 30.0% | |
| !! | AGCTTTTAAACTATTTGCTG+AGG | - | chr2_2:17340581-17340600 | Msa0241630:CDS | 30.0% |
| !! | CATTCAAGGATTTTTGAGAA+AGG | + | chr2_2:17340709-17340728 | None:intergenic | 30.0% |
| CTTTCTCAAAAATCCTTGAA+TGG | - | chr2_2:17340707-17340726 | Msa0241630:CDS | 30.0% | |
| AAAACATACTTCTCCATTCA+AGG | + | chr2_2:17340723-17340742 | None:intergenic | 30.0% | |
| ! | CTTTTCTTTCTCTGCAATTT+TGG | + | chr2_2:17340892-17340911 | None:intergenic | 30.0% |
| ! | TGCAAGAAAAGAATTTTGTG+TGG | - | chr2_2:17341003-17341022 | Msa0241630:intron | 30.0% |
| !! | AAACATACTTGTTTCTAGCA+TGG | - | chr2_2:17341109-17341128 | Msa0241630:intron | 30.0% |
| AGAAAGTAAAGTAGCTGATA+TGG | - | chr2_2:17341181-17341200 | Msa0241630:intron | 30.0% | |
| AGATTAAACAAGGAAATGTC+AGG | - | chr2_2:17341218-17341237 | Msa0241630:intron | 30.0% | |
| GATGTGCAACGATTTAAAAA+GGG | + | chr2_2:17341296-17341315 | None:intergenic | 30.0% | |
| ATCCACAAATTTCTCAGAAA+AGG | - | chr2_2:17341418-17341437 | Msa0241630:intron | 30.0% | |
| !! | TACCTTTTCTGAGAAATTTG+TGG | + | chr2_2:17341423-17341442 | None:intergenic | 30.0% |
| TAAGCAGATAGCAAAAGAAT+GGG | + | chr2_2:17341454-17341473 | None:intergenic | 30.0% | |
| ATAAGCAGATAGCAAAAGAA+TGG | + | chr2_2:17341455-17341474 | None:intergenic | 30.0% | |
| TGACTATAACTATATCAGCT+TGG | + | chr2_2:17341889-17341908 | None:intergenic | 30.0% | |
| ATAATGCAACTCACTAATTC+GGG | + | chr2_2:17341924-17341943 | None:intergenic | 30.0% | |
| CAACAATAACATTCATGGAA+GGG | + | chr2_2:17342068-17342087 | None:intergenic | 30.0% | |
| ACAACAATAACATTCATGGA+AGG | + | chr2_2:17342069-17342088 | None:intergenic | 30.0% | |
| TACATAATTCAGCTCAAAAG+TGG | + | chr2_2:17342491-17342510 | None:intergenic | 30.0% | |
| TAAAATTGCAGAATCAACGC+TGG | - | chr2_2:17339490-17339509 | Msa0241630:three_prime_UTR | 35.0% | |
| AAAATTGCAGAATCAACGCT+GGG | - | chr2_2:17339491-17339510 | Msa0241630:three_prime_UTR | 35.0% | |
| ATTATGAAGCAGCAGAAAAC+CGG | - | chr2_2:17339977-17339996 | Msa0241630:intron | 35.0% | |
| TATGAACAATACATTCCGAC+CGG | + | chr2_2:17339999-17340018 | None:intergenic | 35.0% | |
| ! | AGTCCTGTTGTTATTCTTGT+TGG | - | chr2_2:17340018-17340037 | Msa0241630:intron | 35.0% |
| GTACCTACACTTATGATAGA+AGG | - | chr2_2:17340143-17340162 | Msa0241630:intron | 35.0% | |
| ACACCTTCTATCATAAGTGT+AGG | + | chr2_2:17340149-17340168 | None:intergenic | 35.0% | |
| AACCACATAACTGTAAGAGT+TGG | - | chr2_2:17340371-17340390 | Msa0241630:CDS | 35.0% | |
| ! | AATAAGGTATTTCACCACCA+AGG | + | chr2_2:17340397-17340416 | None:intergenic | 35.0% |
| TATCACTTCCAAATTGGCAT+TGG | - | chr2_2:17340500-17340519 | Msa0241630:CDS | 35.0% | |
| ATCACTTCCAAATTGGCATT+GGG | - | chr2_2:17340501-17340520 | Msa0241630:CDS | 35.0% | |
| ! | AGAGAGTACAAAGGATGATT+TGG | - | chr2_2:17340658-17340677 | Msa0241630:CDS | 35.0% |
| !!! | GATTTGGAGGATTTTAAAGC+CGG | - | chr2_2:17340674-17340693 | Msa0241630:CDS | 35.0% |
| !!! | ATTTGGAGGATTTTAAAGCC+GGG | - | chr2_2:17340675-17340694 | Msa0241630:CDS | 35.0% |
| TTGAGAAAGGTAATCAAACC+CGG | + | chr2_2:17340696-17340715 | None:intergenic | 35.0% | |
| ! | CTGAGAAGTCACTTTATAAC+AGG | - | chr2_2:17340791-17340810 | Msa0241630:CDS | 35.0% |
| ! | AGTTCATCTTTGGTTTCATC+AGG | + | chr2_2:17340918-17340937 | None:intergenic | 35.0% |
| CGATGTGCAACGATTTAAAA+AGG | + | chr2_2:17341297-17341316 | None:intergenic | 35.0% | |
| !!! | CGTGTCTCTTTCTTTTTTCA+AGG | + | chr2_2:17341372-17341391 | None:intergenic | 35.0% |
| ! | TTCTGAGAAATTTGTGGATG+TGG | + | chr2_2:17341417-17341436 | None:intergenic | 35.0% |
| TTCGTTAGACTAAACACACA+AGG | + | chr2_2:17341612-17341631 | None:intergenic | 35.0% | |
| TGTTTAGTCTAACGAACACA+GGG | - | chr2_2:17341616-17341635 | Msa0241630:intron | 35.0% | |
| CTGGACAACAATAACATTCA+TGG | + | chr2_2:17342073-17342092 | None:intergenic | 35.0% | |
| CATGAATGTTATTGTTGTCC+AGG | - | chr2_2:17342071-17342090 | Msa0241630:CDS | 35.0% | |
| AAAAGAAGCTTGAAGAGGAA+AGG | - | chr2_2:17342096-17342115 | Msa0241630:CDS | 35.0% | |
| AAGTTGGAAGAGAACAGTTT+GGG | + | chr2_2:17342150-17342169 | None:intergenic | 35.0% | |
| !!! | TAGTTTTGGAACCTTGAAGT+TGG | + | chr2_2:17342166-17342185 | None:intergenic | 35.0% |
| ! | TATTGTGTGTTTGGAACCAT+CGG | - | chr2_2:17342253-17342272 | Msa0241630:CDS | 35.0% |
| !! | CTACTAGTTGTAGCTGTTTT+TGG | + | chr2_2:17342302-17342321 | None:intergenic | 35.0% |
| AATACAAGACTGAGTGTGTT+TGG | + | chr2_2:17342365-17342384 | None:intergenic | 35.0% | |
| TGATTAGTGAGCTTTCTGTT+TGG | - | chr2_2:17342423-17342442 | Msa0241630:exon | 35.0% | |
| AATCTGTAGAGCGTGGAAAT+TGG | - | chr2_2:17339373-17339392 | Msa0241630:three_prime_UTR | 40.0% | |
| ATCTGTAGAGCGTGGAAATT+GGG | - | chr2_2:17339374-17339393 | Msa0241630:three_prime_UTR | 40.0% | |
| GGTTCAGATGATGAAGAATC+AGG | - | chr2_2:17339416-17339435 | Msa0241630:three_prime_UTR | 40.0% | |
| !! | AGCTAAGGCTGATTTGATGA+TGG | - | chr2_2:17339691-17339710 | Msa0241630:intron | 40.0% |
| !! | GCTAAGGCTGATTTGATGAT+GGG | - | chr2_2:17339692-17339711 | Msa0241630:intron | 40.0% |
| !! | TTGATGGGTCCCTTTGATTT+TGG | - | chr2_2:17339818-17339837 | Msa0241630:intron | 40.0% |
| !! | TGATGGGTCCCTTTGATTTT+GGG | - | chr2_2:17339819-17339838 | Msa0241630:intron | 40.0% |
| AAGTGTAGGTACTACAGAGA+AGG | + | chr2_2:17340135-17340154 | None:intergenic | 40.0% | |
| ! | CTTATGATAGAAGGTGTGTC+CGG | - | chr2_2:17340152-17340171 | Msa0241630:intron | 40.0% |
| TTTGACTAACAGTGAGACTC+CGG | + | chr2_2:17340174-17340193 | None:intergenic | 40.0% | |
| GTGACCATTCCAAGATTGAT+AGG | + | chr2_2:17340271-17340290 | None:intergenic | 40.0% | |
| ATCTTGGAATGGTCACTGAT+AGG | - | chr2_2:17340275-17340294 | Msa0241630:intron | 40.0% | |
| TGTTGTTGTAGCACACTTCT+AGG | - | chr2_2:17340324-17340343 | Msa0241630:CDS | 40.0% | |
| ! | ATAACTGTAAGAGTTGGCCT+TGG | - | chr2_2:17340377-17340396 | Msa0241630:CDS | 40.0% |
| CCTACTGTGAAAACAAACAC+TGG | + | chr2_2:17340444-17340463 | None:intergenic | 40.0% | |
| !! | CCAGTGTTTGTTTTCACAGT+AGG | - | chr2_2:17340441-17340460 | Msa0241630:CDS | 40.0% |
| ! | TTTGACTGCAGAGAGTACAA+AGG | - | chr2_2:17340649-17340668 | Msa0241630:CDS | 40.0% |
| ! | GAGTACAAAGGATGATTTGG+AGG | - | chr2_2:17340661-17340680 | Msa0241630:CDS | 40.0% |
| ! | GTCACTTTATAACAGGACCA+AGG | - | chr2_2:17340798-17340817 | Msa0241630:CDS | 40.0% |
| AAGAAAGGAACCTCAAGTAG+TGG | - | chr2_2:17340849-17340868 | Msa0241630:CDS | 40.0% | |
| AGAAAGGAACCTCAAGTAGT+GGG | - | chr2_2:17340850-17340869 | Msa0241630:CDS | 40.0% | |
| AAACCAAAGATGAACTGAGC+AGG | - | chr2_2:17340922-17340941 | Msa0241630:CDS | 40.0% | |
| AACCAAAGATGAACTGAGCA+GGG | - | chr2_2:17340923-17340942 | Msa0241630:CDS | 40.0% | |
| !! | CATACTTGTTTCTAGCATGG+AGG | - | chr2_2:17341112-17341131 | Msa0241630:intron | 40.0% |
| GTGTTTAGTCTAACGAACAC+AGG | - | chr2_2:17341615-17341634 | Msa0241630:intron | 40.0% | |
| ! | AAACATGTGCTTGTTACCTG+TGG | - | chr2_2:17341821-17341840 | Msa0241630:intron | 40.0% |
| ! | AACATGTGCTTGTTACCTGT+GGG | - | chr2_2:17341822-17341841 | Msa0241630:intron | 40.0% |
| AATAGCAGAATTTACCCCAC+AGG | + | chr2_2:17341840-17341859 | None:intergenic | 40.0% | |
| CAACTCACTAATTCGGGAAT+AGG | + | chr2_2:17341918-17341937 | None:intergenic | 40.0% | |
| GTTGCATTATATCGACCATC+TGG | - | chr2_2:17341934-17341953 | Msa0241630:intron | 40.0% | |
| ! | TCTTCAAGCTTCTTTTCTCC+TGG | + | chr2_2:17342092-17342111 | None:intergenic | 40.0% |
| AGGAGAAAAGAAGCTTGAAG+AGG | - | chr2_2:17342091-17342110 | Msa0241630:CDS | 40.0% | |
| ! | TCTCTGTGGTGGGAATAATT+GGG | + | chr2_2:17342125-17342144 | None:intergenic | 40.0% |
| GAAGTTGGAAGAGAACAGTT+TGG | + | chr2_2:17342151-17342170 | None:intergenic | 40.0% | |
| ACTGTTCTCTTCCAACTTCA+AGG | - | chr2_2:17342152-17342171 | Msa0241630:intron | 40.0% | |
| !!! | TTTGGAACCATCGGTTTTCA+CGG | - | chr2_2:17342262-17342281 | Msa0241630:CDS | 40.0% |
| !!! | GTAGCTGTTTTTGGTACGTT+AGG | + | chr2_2:17342293-17342312 | None:intergenic | 40.0% |
| GTTAAAGAGAGCTTAACGTG+CGG | + | chr2_2:17342336-17342355 | None:intergenic | 40.0% | |
| ! | GTGAGCTTTCTGTTTGGAAT+AGG | - | chr2_2:17342429-17342448 | Msa0241630:exon | 40.0% |
| ! | TCTACGGCGTTTGAAGGTTT+TGG | + | chr2_2:17339354-17339373 | None:intergenic | 45.0% |
| ACAGATTCTACGGCGTTTGA+AGG | + | chr2_2:17339360-17339379 | None:intergenic | 45.0% | |
| TCCACGCTCTACAGATTCTA+CGG | + | chr2_2:17339370-17339389 | None:intergenic | 45.0% | |
| ACGGTTGCTTGAAGAAGCTA+AGG | - | chr2_2:17339676-17339695 | Msa0241630:intron | 45.0% | |
| TGTGCTACAACAACAGTCAG+TGG | + | chr2_2:17340319-17340338 | None:intergenic | 45.0% | |
| GGCCAACTCTTACAGTTATG+TGG | + | chr2_2:17340376-17340395 | None:intergenic | 45.0% | |
| TTTGCGTCCCAATGCCAATT+TGG | + | chr2_2:17340511-17340530 | None:intergenic | 45.0% | |
| TATCCTTCAATGGCGTTCCT+TGG | + | chr2_2:17340818-17340837 | None:intergenic | 45.0% | |
| CTCTTGCCAGTATCCTTCAA+TGG | + | chr2_2:17340828-17340847 | None:intergenic | 45.0% | |
| CATTGAAGGATACTGGCAAG+AGG | - | chr2_2:17340826-17340845 | Msa0241630:CDS | 45.0% | |
| GATACTGGCAAGAGGAAGAA+AGG | - | chr2_2:17340834-17340853 | Msa0241630:CDS | 45.0% | |
| CTTCTTCTTCCCACTACTTG+AGG | + | chr2_2:17340862-17340881 | None:intergenic | 45.0% | |
| TACCCTGCTCAGTTCATCTT+TGG | + | chr2_2:17340928-17340947 | None:intergenic | 45.0% | |
| GGAAATGTCAGGACTCTCAA+CGG | - | chr2_2:17341229-17341248 | Msa0241630:intron | 45.0% | |
| ACATCGAGTACTAGTGACTC+TGG | - | chr2_2:17341311-17341330 | Msa0241630:intron | 45.0% | |
| CTGGAAAAGTTGAGAGTAGC+AGG | - | chr2_2:17341330-17341349 | Msa0241630:intron | 45.0% | |
| ! | GATGTGGAAGCATGTTCATC+AGG | + | chr2_2:17341401-17341420 | None:intergenic | 45.0% |
| ! | ACATGTGCTTGTTACCTGTG+GGG | - | chr2_2:17341823-17341842 | Msa0241630:intron | 45.0% |
| ! | GCGTTGAAGCTATTTCCAGA+TGG | + | chr2_2:17341952-17341971 | None:intergenic | 45.0% |
| ! | GTCTCTGTGGTGGGAATAAT+TGG | + | chr2_2:17342126-17342145 | None:intergenic | 45.0% |
| !!! | TTTGTTATTTTAATTTTAAA+TGG | - | chr2_2:17340070-17340089 | Msa0241630:intron | 5.0% |
| CGCATCGTGTGATGCAGAAT+AGG | + | chr2_2:17339318-17339337 | None:intergenic | 50.0% | |
| TGAAGCAGCAGAAAACCGGT+CGG | - | chr2_2:17339981-17340000 | Msa0241630:intron | 50.0% | |
| !! | ACTGTAAGAGTTGGCCTTGG+TGG | - | chr2_2:17340380-17340399 | Msa0241630:CDS | 50.0% |
| GGAACGCCATTGAAGGATAC+TGG | - | chr2_2:17340819-17340838 | Msa0241630:CDS | 50.0% | |
| GTCAGGACTCTCAACGGAAT+TGG | - | chr2_2:17341235-17341254 | Msa0241630:intron | 50.0% | |
| AGTTTGGGAGTCTCTGTGGT+GGG | + | chr2_2:17342135-17342154 | None:intergenic | 50.0% | |
| GAACAGTTTGGGAGTCTCTG+TGG | + | chr2_2:17342139-17342158 | None:intergenic | 50.0% | |
| !!! | AACCATCGGTTTTCACGGTG+TGG | - | chr2_2:17342267-17342286 | Msa0241630:CDS | 50.0% |
| GCCGTAGAATCTGTAGAGCG+TGG | - | chr2_2:17339366-17339385 | Msa0241630:three_prime_UTR | 55.0% | |
| GGACCAAGGAACGCCATTGA+AGG | - | chr2_2:17340812-17340831 | Msa0241630:CDS | 55.0% | |
| CAGTTTGGGAGTCTCTGTGG+TGG | + | chr2_2:17342136-17342155 | None:intergenic | 55.0% | |
| GGCCACACCGTGAAAACCGA+TGG | + | chr2_2:17342272-17342291 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 17339229 | 17342533 | 17339229 | ID=Msa0241630;Name=Msa0241630 |
| chr2_2 | mRNA | 17339229 | 17342533 | 17339229 | ID=Msa0241630-mRNA-1;Parent=Msa0241630;Name=Msa0241630-mRNA-1;_AED=0.01;_eAED=0.01;_QI=104|1|1|1|1|1|5|324|382 |
| chr2_2 | exon | 17339229 | 17339669 | 17339229 | ID=Msa0241630-mRNA-1:exon:7115;Parent=Msa0241630-mRNA-1 |
| chr2_2 | exon | 17340323 | 17340949 | 17340323 | ID=Msa0241630-mRNA-1:exon:7114;Parent=Msa0241630-mRNA-1 |
| chr2_2 | exon | 17341029 | 17341102 | 17341029 | ID=Msa0241630-mRNA-1:exon:7113;Parent=Msa0241630-mRNA-1 |
| chr2_2 | exon | 17342007 | 17342118 | 17342007 | ID=Msa0241630-mRNA-1:exon:7112;Parent=Msa0241630-mRNA-1 |
| chr2_2 | exon | 17342211 | 17342533 | 17342211 | ID=Msa0241630-mRNA-1:exon:7111;Parent=Msa0241630-mRNA-1 |
| chr2_2 | five_prime_UTR | 17342430 | 17342533 | 17342430 | ID=Msa0241630-mRNA-1:five_prime_utr;Parent=Msa0241630-mRNA-1 |
| chr2_2 | CDS | 17342211 | 17342429 | 17342211 | ID=Msa0241630-mRNA-1:cds;Parent=Msa0241630-mRNA-1 |
| chr2_2 | CDS | 17342007 | 17342118 | 17342007 | ID=Msa0241630-mRNA-1:cds;Parent=Msa0241630-mRNA-1 |
| chr2_2 | CDS | 17341029 | 17341102 | 17341029 | ID=Msa0241630-mRNA-1:cds;Parent=Msa0241630-mRNA-1 |
| chr2_2 | CDS | 17340323 | 17340949 | 17340323 | ID=Msa0241630-mRNA-1:cds;Parent=Msa0241630-mRNA-1 |
| chr2_2 | CDS | 17339553 | 17339669 | 17339553 | ID=Msa0241630-mRNA-1:cds;Parent=Msa0241630-mRNA-1 |
| chr2_2 | three_prime_UTR | 17339229 | 17339552 | 17339229 | ID=Msa0241630-mRNA-1:three_prime_utr;Parent=Msa0241630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
