Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0335990 | XP_003596831.1 | 89.035 | 456 | 26 | 2 | 1 | 437 | 1 | 451 | 0.0 | 806 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0335990 | sp|Q9FMR1|RGAP1_ARATH | 55.802 | 405 | 132 | 7 | 52 | 437 | 90 | 466 | 1.07e-135 | 400 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0134550 | Msa0335990 | 0.801026 | 1.093098e-48 | -8.615850e-47 |
| Msa0189050 | Msa0335990 | 0.811777 | 5.908592e-51 | -8.615850e-47 |
| Msa0219140 | Msa0335990 | 0.885414 | 8.297972e-72 | -8.615850e-47 |
| Msa0231310 | Msa0335990 | 0.809965 | 1.457854e-50 | -8.615850e-47 |
| Msa0258960 | Msa0335990 | 0.856859 | 2.419623e-62 | -8.615850e-47 |
| Msa0298180 | Msa0335990 | 0.866390 | 2.951983e-65 | -8.615850e-47 |
| Msa0309160 | Msa0335990 | 0.812779 | 3.569670e-51 | -8.615850e-47 |
| Msa0335990 | Msa1041620 | 0.803415 | 3.523899e-49 | -8.615850e-47 |
| Msa0335990 | Msa1081650 | 0.804296 | 2.312457e-49 | -8.615850e-47 |
| Msa0335990 | Msa1166520 | 0.802466 | 5.535361e-49 | -8.615850e-47 |
| Msa0335990 | Msa1390410 | 0.813917 | 2.007864e-51 | -8.615850e-47 |
| Msa0335990 | Msa1443430 | 0.993427 | 1.156785e-199 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0335990 | MtrunA17_Chr2g0321541 | 89.035 | 456 | 26 | 2 | 1 | 437 | 1 | 451 | 0.0 | 806 |
| Msa0335990 | MtrunA17_Chr7g0266501 | 51.435 | 418 | 160 | 7 | 52 | 437 | 71 | 477 | 3.88e-132 | 389 |
| Msa0335990 | MtrunA17_Chr4g0026251 | 65.217 | 299 | 79 | 3 | 46 | 325 | 64 | 356 | 9.46e-131 | 381 |
| Msa0335990 | MtrunA17_Chr8g0346171 | 56.886 | 334 | 107 | 5 | 47 | 361 | 79 | 394 | 1.45e-117 | 352 |
| Msa0335990 | MtrunA17_Chr1g0196181 | 68.376 | 234 | 55 | 1 | 75 | 289 | 64 | 297 | 1.26e-109 | 332 |
| Msa0335990 | MtrunA17_Chr7g0268531 | 60.618 | 259 | 78 | 2 | 55 | 289 | 32 | 290 | 2.25e-97 | 298 |
| Msa0335990 | MtrunA17_Chr7g0250591 | 51.152 | 217 | 84 | 3 | 117 | 316 | 14 | 225 | 1.54e-62 | 201 |
| Msa0335990 | MtrunA17_Chr5g0426461 | 64.968 | 157 | 32 | 2 | 117 | 254 | 16 | 168 | 5.31e-61 | 196 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0335990 | AT5G22400.1 | 55.802 | 405 | 132 | 7 | 52 | 437 | 90 | 466 | 1.08e-136 | 400 |
| Msa0335990 | AT3G11490.1 | 54.237 | 354 | 104 | 5 | 25 | 328 | 19 | 364 | 3.89e-117 | 349 |
| Msa0335990 | AT2G46710.1 | 60.137 | 291 | 93 | 3 | 21 | 289 | 44 | 333 | 2.79e-112 | 338 |
| Msa0335990 | AT1G08340.1 | 64.898 | 245 | 67 | 1 | 78 | 303 | 1 | 245 | 1.15e-111 | 332 |
| Msa0335990 | AT4G03100.1 | 59.851 | 269 | 78 | 2 | 50 | 288 | 39 | 307 | 9.63e-108 | 325 |
Find 91 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAAGGTTGCAAATTTCTA+AGG | 0.198022 | 2_4:+55269302 | Msa0335990:three_prime_UTR |
| TCTTGAAAATGCTTATATTA+AGG | 0.202458 | 2_4:+55268748 | Msa0335990:CDS |
| GTAAGTTTGTTTAAAGTATA+AGG | 0.221431 | 2_4:+55269286 | Msa0335990:three_prime_UTR |
| ATATTATTTGTTGCGTGTTT+TGG | 0.231978 | 2_4:-55266027 | None:intergenic |
| TGATAGGTTCAATGGTTTCT+TGG | 0.248536 | 2_4:+55266567 | Msa0335990:CDS |
| CCTAGCACTAGGAGGCCTTC+TGG | 0.256375 | 2_4:-55266620 | None:intergenic |
| AAAAGTGTCGGTCGAGAAAA+AGG | 0.290122 | 2_4:+55269160 | Msa0335990:CDS |
| TGTCATGGTGGCAATGAAAA+AGG | 0.303033 | 2_4:-55266269 | None:intergenic |
| GGAACTTCCTAGCGGCGTTC+TGG | 0.311234 | 2_4:+55268345 | Msa0335990:CDS |
| GATAGGTTCAATGGTTTCTT+GGG | 0.327251 | 2_4:+55266568 | Msa0335990:CDS |
| TTGTCTGGCAGGACTAATTA+AGG | 0.347959 | 2_4:+55267446 | Msa0335990:CDS |
| GAAGGTTCTAAATTCAATCT+TGG | 0.352625 | 2_4:-55268810 | None:intergenic |
| CAATACAGTCTTCCTCAGTT+TGG | 0.354458 | 2_4:-55268399 | None:intergenic |
| CTGAAGCTGCACTCTTGGAT+TGG | 0.367227 | 2_4:+55268446 | Msa0335990:CDS |
| GAAGTTGAAGTTGAAGTTGA+AGG | 0.390622 | 2_4:-55266349 | None:intergenic |
| TCCTCAACTGAAAGAGAATC+TGG | 0.397060 | 2_4:+55268972 | Msa0335990:CDS |
| GTTGTTGTGTAACATGTTGT+TGG | 0.400032 | 2_4:+55265934 | Msa0335990:five_prime_UTR |
| AGTAGTTCAAATGCTAGAAA+AGG | 0.402969 | 2_4:+55269098 | Msa0335990:CDS |
| TCATGCTGAAGCTGCACTCT+TGG | 0.410731 | 2_4:+55268441 | Msa0335990:CDS |
| GAACAGACCTGAGTCATGTT+TGG | 0.422768 | 2_4:-55268550 | None:intergenic |
| CTAGCACTAGGAGGCCTTCT+GGG | 0.423002 | 2_4:-55266619 | None:intergenic |
| TACATCAGCCATTAGATTGA+TGG | 0.431052 | 2_4:-55268470 | None:intergenic |
| ACAATGTACATCAATGTCTT+CGG | 0.436039 | 2_4:-55267427 | None:intergenic |
| CAATGTACATCAATGTCTTC+GGG | 0.437265 | 2_4:-55267426 | None:intergenic |
| GGAGGCCTTCTGGGAAAATC+AGG | 0.439195 | 2_4:-55266610 | None:intergenic |
| GTTAGGAATCAATTGAACTT+AGG | 0.440142 | 2_4:+55267396 | Msa0335990:CDS |
| AGACATTGATGTACATTGTC+TGG | 0.451823 | 2_4:+55267431 | Msa0335990:CDS |
| GGATTGGGCCATCAATCTAA+TGG | 0.467322 | 2_4:+55268462 | Msa0335990:CDS |
| TGAAGCTGCACTCTTGGATT+GGG | 0.473582 | 2_4:+55268447 | Msa0335990:CDS |
| AAGTAAAATGAGGTGGAGAA+TGG | 0.481632 | 2_4:-55266300 | None:intergenic |
| ATAGTCAAGAGGAACATGTT+AGG | 0.482181 | 2_4:+55267379 | Msa0335990:CDS |
| GCGTACATCAATGCAGTGAA+TGG | 0.486250 | 2_4:-55268708 | None:intergenic |
| AAATCAGGTTCAAACTCGTC+AGG | 0.491520 | 2_4:-55266595 | None:intergenic |
| GCCAGATTCTCTTTCAGTTG+AGG | 0.491573 | 2_4:-55268973 | None:intergenic |
| GGACAACAACCTGTGATCAA+TGG | 0.493660 | 2_4:+55269137 | Msa0335990:CDS |
| GAATCAATTGAACTTAGGAT+TGG | 0.495739 | 2_4:+55267401 | Msa0335990:CDS |
| GTAGTTCAAATGCTAGAAAA+GGG | 0.502633 | 2_4:+55269099 | Msa0335990:CDS |
| TGTTACACAACAACATTGAA+AGG | 0.509170 | 2_4:-55265925 | None:intergenic |
| CAAAAGTAACGTGCGCGACA+TGG | 0.509730 | 2_4:-55266546 | None:intergenic |
| AAAAGGAAGAGTAGAGCTAA+AGG | 0.510961 | 2_4:-55265897 | None:intergenic |
| GATCAGACCGAGTCGAAGCT+TGG | 0.514597 | 2_4:+55269213 | Msa0335990:CDS |
| AACATTGAAAGGGAAACAAA+AGG | 0.515029 | 2_4:-55265914 | None:intergenic |
| TACTTTAAACAAACTTACAA+AGG | 0.523846 | 2_4:-55269281 | None:intergenic |
| TTCACCGCCAAGCTTCGACT+CGG | 0.526197 | 2_4:-55269220 | None:intergenic |
| GGACTCATTATCACAAGAGC+AGG | 0.528004 | 2_4:+55268366 | Msa0335990:CDS |
| GTGGGGAAGAATAACAAGTC+TGG | 0.528840 | 2_4:+55269068 | Msa0335990:CDS |
| TTTGTACATGTATAGGTGGA+AGG | 0.531414 | 2_4:+55267333 | Msa0335990:intron |
| AAGGACGCTACGAGAAAGAA+AGG | 0.533822 | 2_4:+55268767 | Msa0335990:CDS |
| GTTACACAACAACATTGAAA+GGG | 0.536375 | 2_4:-55265924 | None:intergenic |
| TTGTTGCCACTACTCTTGAA+AGG | 0.537642 | 2_4:-55266481 | None:intergenic |
| GCGACATGGCGAACGTTAGT+TGG | 0.540156 | 2_4:-55266532 | None:intergenic |
| TTATTTCCTTTCAAGAGTAG+TGG | 0.553770 | 2_4:+55266475 | Msa0335990:CDS |
| ATAAGGTTGCAAATTTCTAA+GGG | 0.554414 | 2_4:+55269303 | Msa0335990:three_prime_UTR |
| ATTGATGTACATTGTCTGGC+AGG | 0.558765 | 2_4:+55267435 | Msa0335990:CDS |
| TTGTACATGTATAGGTGGAA+GGG | 0.562108 | 2_4:+55267334 | Msa0335990:intron |
| AAATGAGAAATAGTAAGACT+TGG | 0.562992 | 2_4:-55266134 | None:intergenic |
| CCAGAAGGCCTCCTAGTGCT+AGG | 0.566429 | 2_4:+55266620 | Msa0335990:CDS |
| GAAATGACTCGAAAAGTCTA+CGG | 0.568493 | 2_4:-55268848 | None:intergenic |
| CGGTGTACATTCTCATCAGA+AGG | 0.569866 | 2_4:-55268828 | None:intergenic |
| CAACAAAGACGTTTGCAACA+TGG | 0.570037 | 2_4:+55266498 | Msa0335990:CDS |
| GGAATCAGATTTCATTACAA+TGG | 0.570601 | 2_4:-55269461 | None:intergenic |
| GAAGTTGAAGTTGAAGGTGT+TGG | 0.580577 | 2_4:-55266343 | None:intergenic |
| AATGAGTCCAGAACGCCGCT+AGG | 0.582282 | 2_4:-55268352 | None:intergenic |
| GGAAAATGTGGTTGTGAAGG+AGG | 0.586388 | 2_4:-55266415 | None:intergenic |
| TGAGAATCTAATTTGCAATG+AGG | 0.590817 | 2_4:+55269013 | Msa0335990:CDS |
| AAGAGTGCAGCTTCAGCATG+AGG | 0.593298 | 2_4:-55268439 | None:intergenic |
| CAGTTATCTTATGATTCAAG+AGG | 0.593577 | 2_4:+55267153 | Msa0335990:CDS |
| TAATGCAGACAATAGTCAAG+AGG | 0.607790 | 2_4:+55267368 | Msa0335990:CDS |
| ACATGGCGAACGTTAGTTGG+AGG | 0.610488 | 2_4:-55266529 | None:intergenic |
| AGTGGAAAATGTGGTTGTGA+AGG | 0.613159 | 2_4:-55266418 | None:intergenic |
| GAATGCGCGCAACATTGCCA+TGG | 0.614312 | 2_4:+55268519 | Msa0335990:CDS |
| TATTACATATACCTAGCACT+AGG | 0.623924 | 2_4:-55266631 | None:intergenic |
| TGCAGCAGCAGACAATGAAG+AGG | 0.625545 | 2_4:+55268884 | Msa0335990:CDS |
| AGTTAGAATGAAGAAAAGTG+TGG | 0.627548 | 2_4:-55266088 | None:intergenic |
| TATATAAGTTAAACAAACAC+AGG | 0.627876 | 2_4:-55269367 | None:intergenic |
| GTTAGAATGAAGAAAAGTGT+GGG | 0.630052 | 2_4:-55266087 | None:intergenic |
| TGGCAAGAGAATGAAGAGAG+AGG | 0.631862 | 2_4:-55266379 | None:intergenic |
| TGTGATCAATGGAAAAGTGT+CGG | 0.637614 | 2_4:+55269148 | Msa0335990:CDS |
| AAGACTGTATTGAATTAGTG+AGG | 0.637862 | 2_4:+55268410 | Msa0335990:CDS |
| AGTTATCTTATGATTCAAGA+GGG | 0.643572 | 2_4:+55267154 | Msa0335990:CDS |
| TACATATACCTAGCACTAGG+AGG | 0.645242 | 2_4:-55266628 | None:intergenic |
| TTTCCTCCGAAAAGAAACGT+GGG | 0.647448 | 2_4:+55269050 | Msa0335990:CDS |
| GATGATGAAGTAAAATGAGG+TGG | 0.654198 | 2_4:-55266307 | None:intergenic |
| GTTGATGATGAAGTAAAATG+AGG | 0.658128 | 2_4:-55266310 | None:intergenic |
| CAGACCGAGTCGAAGCTTGG+CGG | 0.664957 | 2_4:+55269216 | Msa0335990:CDS |
| GTTTCCTCCGAAAAGAAACG+TGG | 0.672738 | 2_4:+55269049 | Msa0335990:CDS |
| GGTAATGCAATGCCAAACTG+AGG | 0.689673 | 2_4:+55268387 | Msa0335990:CDS |
| AGAATGGAGAACTTCTGTCA+TGG | 0.691349 | 2_4:-55266284 | None:intergenic |
| TTCCTCCGAAAAGAAACGTG+GGG | 0.693572 | 2_4:+55269051 | Msa0335990:CDS |
| ATGGAGAACTTCTGTCATGG+TGG | 0.693833 | 2_4:-55266281 | None:intergenic |
| TGGTTTCGGGAACTTCCTAG+CGG | 0.730728 | 2_4:+55268337 | Msa0335990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGAAAGAAAAAAAAAAC+TGG | - | chr2_4:55266730-55266749 | None:intergenic | 15.0% |
| !!! | TATAAAAGCATTAATGAAAA+AGG | - | chr2_4:55268261-55268280 | None:intergenic | 15.0% |
| !!! | TATTTTCTGAATTAAGAAAG+TGG | - | chr2_4:55266194-55266213 | None:intergenic | 20.0% |
| !! | TACTAAACAAAAATCAGATA+TGG | - | chr2_4:55266753-55266772 | None:intergenic | 20.0% |
| !! | TTAGTAGTGTATATAATTCA+TGG | + | chr2_4:55266767-55266786 | Msa0335990:intron | 20.0% |
| !! | ACCATTTATATGTCATAATT+TGG | + | chr2_4:55266842-55266861 | Msa0335990:intron | 20.0% |
| !! | TCCAAATTATGACATATAAA+TGG | - | chr2_4:55266846-55266865 | None:intergenic | 20.0% |
| !! | TCATAATTTGGATTGAATAA+GGG | + | chr2_4:55266854-55266873 | Msa0335990:intron | 20.0% |
| !! | AACTATGCTAAGAAAAATAT+AGG | + | chr2_4:55266982-55267001 | Msa0335990:intron | 20.0% |
| !! | AAAATCAAACAAAAAAAGAG+AGG | - | chr2_4:55267090-55267109 | None:intergenic | 20.0% |
| !! | ATTATTTGGGAATGTAAATT+GGG | + | chr2_4:55267875-55267894 | Msa0335990:intron | 20.0% |
| !!! | TTCAAGTTAATCACAATATT+TGG | + | chr2_4:55268661-55268680 | Msa0335990:intron | 20.0% |
| !! | TCTTGAAAATGCTTATATTA+AGG | + | chr2_4:55268748-55268767 | Msa0335990:CDS | 20.0% |
| !! | TACTTTAAACAAACTTACAA+AGG | - | chr2_4:55269284-55269303 | None:intergenic | 20.0% |
| !!! | GTAAGTTTGTTTAAAGTATA+AGG | + | chr2_4:55269286-55269305 | Msa0335990:three_prime_UTR | 20.0% |
| !! | TATATAAGTTAAACAAACAC+AGG | - | chr2_4:55269370-55269389 | None:intergenic | 20.0% |
| !!! | ATATTATTTGTTGCGTGTTT+TGG | - | chr2_4:55266030-55266049 | None:intergenic | 25.0% |
| !! | ATCATGAAGTGAGTATTTTA+AGG | - | chr2_4:55266059-55266078 | None:intergenic | 25.0% |
| ! | AAATGAGAAATAGTAAGACT+TGG | - | chr2_4:55266137-55266156 | None:intergenic | 25.0% |
| ! | GTCATAATTTGGATTGAATA+AGG | + | chr2_4:55266853-55266872 | Msa0335990:intron | 25.0% |
| ! | GAGGAAAAAGTAAAACAAAA+AGG | - | chr2_4:55267071-55267090 | None:intergenic | 25.0% |
| ! | AGTTATCTTATGATTCAAGA+GGG | + | chr2_4:55267154-55267173 | Msa0335990:CDS | 25.0% |
| !!! | ACTAGTTCAATTATTTTGCT+TGG | + | chr2_4:55267297-55267316 | Msa0335990:intron | 25.0% |
| ! | AGTTGAATTTGTACATGTAT+AGG | + | chr2_4:55267326-55267345 | Msa0335990:intron | 25.0% |
| ! | AAAGAAGGTGAAAAAATTCT+TGG | - | chr2_4:55267631-55267650 | None:intergenic | 25.0% |
| !!! | TTTTTTCACCTTCTTTAGAA+AGG | + | chr2_4:55267635-55267654 | Msa0335990:intron | 25.0% |
| !!! | TTTTTCACCTTCTTTAGAAA+GGG | + | chr2_4:55267636-55267655 | Msa0335990:intron | 25.0% |
| !!! | TTTTAAACCCTTTCTAAAGA+AGG | - | chr2_4:55267646-55267665 | None:intergenic | 25.0% |
| ! | TTTGTCTCATTTATTAGACT+TGG | - | chr2_4:55267790-55267809 | None:intergenic | 25.0% |
| ! | CATTATTTGGGAATGTAAAT+TGG | + | chr2_4:55267874-55267893 | Msa0335990:intron | 25.0% |
| ! | ATATATCCTGTAGTTATGAA+TGG | + | chr2_4:55267904-55267923 | Msa0335990:intron | 25.0% |
| ! | AGCTAACATAACAACATATA+GGG | - | chr2_4:55268039-55268058 | None:intergenic | 25.0% |
| ! | TAGCTAACATAACAACATAT+AGG | - | chr2_4:55268040-55268059 | None:intergenic | 25.0% |
| ! | ATTTCAAAGATGAAAATGCA+CGG | - | chr2_4:55268215-55268234 | None:intergenic | 25.0% |
| !! | TGATATTCTTGTACTTTTCA+AGG | + | chr2_4:55268312-55268331 | Msa0335990:intron | 25.0% |
| ! | GCTAAACTATTATTAGTTCA+TGG | + | chr2_4:55268611-55268630 | Msa0335990:intron | 25.0% |
| ! | TATAAGGTTGCAAATTTCTA+AGG | + | chr2_4:55269302-55269321 | Msa0335990:three_prime_UTR | 25.0% |
| ! | ATAAGGTTGCAAATTTCTAA+GGG | + | chr2_4:55269303-55269322 | Msa0335990:three_prime_UTR | 25.0% |
| AACATTGAAAGGGAAACAAA+AGG | - | chr2_4:55265917-55265936 | None:intergenic | 30.0% | |
| GTTACACAACAACATTGAAA+GGG | - | chr2_4:55265927-55265946 | None:intergenic | 30.0% | |
| TGTTACACAACAACATTGAA+AGG | - | chr2_4:55265928-55265947 | None:intergenic | 30.0% | |
| ! | GTTAGAATGAAGAAAAGTGT+GGG | - | chr2_4:55266090-55266109 | None:intergenic | 30.0% |
| AGTTAGAATGAAGAAAAGTG+TGG | - | chr2_4:55266091-55266110 | None:intergenic | 30.0% | |
| !! | GTTGATGATGAAGTAAAATG+AGG | - | chr2_4:55266313-55266332 | None:intergenic | 30.0% |
| TTATTTCCTTTCAAGAGTAG+TGG | + | chr2_4:55266475-55266494 | Msa0335990:CDS | 30.0% | |
| !!! | GTTACTTTTGATAGGTTCAA+TGG | + | chr2_4:55266559-55266578 | Msa0335990:CDS | 30.0% |
| TATTACATATACCTAGCACT+AGG | - | chr2_4:55266634-55266653 | None:intergenic | 30.0% | |
| GTGACAATGCATTACTAAAT+TGG | + | chr2_4:55266876-55266895 | Msa0335990:intron | 30.0% | |
| ATGATTCGTTCGCTAATTAA+AGG | - | chr2_4:55267028-55267047 | None:intergenic | 30.0% | |
| CAGTTATCTTATGATTCAAG+AGG | + | chr2_4:55267153-55267172 | Msa0335990:CDS | 30.0% | |
| TGCATTAACAGAAGAATTGT+TGG | - | chr2_4:55267189-55267208 | None:intergenic | 30.0% | |
| CAATTCTTCTGTTAATGCAA+AGG | + | chr2_4:55267190-55267209 | Msa0335990:intron | 30.0% | |
| TGAATTTGTACATGTATAGG+TGG | + | chr2_4:55267329-55267348 | Msa0335990:intron | 30.0% | |
| GTTAGGAATCAATTGAACTT+AGG | + | chr2_4:55267396-55267415 | Msa0335990:CDS | 30.0% | |
| GAATCAATTGAACTTAGGAT+TGG | + | chr2_4:55267401-55267420 | Msa0335990:CDS | 30.0% | |
| ACAATGTACATCAATGTCTT+CGG | - | chr2_4:55267430-55267449 | None:intergenic | 30.0% | |
| GTTTAGTGAATTGATCTGAA+TGG | + | chr2_4:55267532-55267551 | Msa0335990:intron | 30.0% | |
| TGATTCATCATGTAACTGAT+TGG | + | chr2_4:55267730-55267749 | Msa0335990:intron | 30.0% | |
| !! | ACATCATTTTCAAGACACAT+TGG | + | chr2_4:55267814-55267833 | Msa0335990:intron | 30.0% |
| TTACATTCCCAAATAATGCA+TGG | - | chr2_4:55267872-55267891 | None:intergenic | 30.0% | |
| AAACTACCATTCATAACTAC+AGG | - | chr2_4:55267913-55267932 | None:intergenic | 30.0% | |
| CATAACAACATATAGGGTAA+AGG | - | chr2_4:55268033-55268052 | None:intergenic | 30.0% | |
| ! | AGTTTCTAGGTGTGTATTTA+GGG | - | chr2_4:55268091-55268110 | None:intergenic | 30.0% |
| ! | TAGTTTCTAGGTGTGTATTT+AGG | - | chr2_4:55268092-55268111 | None:intergenic | 30.0% |
| ! | ACACAAGTATTGTAGTTTCT+AGG | - | chr2_4:55268104-55268123 | None:intergenic | 30.0% |
| AAGACTGTATTGAATTAGTG+AGG | + | chr2_4:55268410-55268429 | Msa0335990:CDS | 30.0% | |
| TCTGATAGTACTTATACCTT+AGG | + | chr2_4:55268638-55268657 | Msa0335990:intron | 30.0% | |
| ! | TTGTGATTAACTTGAACCTA+AGG | - | chr2_4:55268657-55268676 | None:intergenic | 30.0% |
| !! | GAAGGTTCTAAATTCAATCT+TGG | - | chr2_4:55268813-55268832 | None:intergenic | 30.0% |
| ! | TGAGAATCTAATTTGCAATG+AGG | + | chr2_4:55269013-55269032 | Msa0335990:CDS | 30.0% |
| AGTAGTTCAAATGCTAGAAA+AGG | + | chr2_4:55269098-55269117 | Msa0335990:CDS | 30.0% | |
| GTAGTTCAAATGCTAGAAAA+GGG | + | chr2_4:55269099-55269118 | Msa0335990:CDS | 30.0% | |
| AAAAGGAAGAGTAGAGCTAA+AGG | - | chr2_4:55265900-55265919 | None:intergenic | 35.0% | |
| GTTGTTGTGTAACATGTTGT+TGG | + | chr2_4:55265934-55265953 | Msa0335990:five_prime_UTR | 35.0% | |
| ! | GTTTTGTGTGTTAGATAGAG+TGG | - | chr2_4:55265977-55265996 | None:intergenic | 35.0% |
| !! | TTTTGAGTATTGTGTTGAGC+TGG | - | chr2_4:55266114-55266133 | None:intergenic | 35.0% |
| AAGTAAAATGAGGTGGAGAA+TGG | - | chr2_4:55266303-55266322 | None:intergenic | 35.0% | |
| GATGATGAAGTAAAATGAGG+TGG | - | chr2_4:55266310-55266329 | None:intergenic | 35.0% | |
| GAAGTTGAAGTTGAAGTTGA+AGG | - | chr2_4:55266352-55266371 | None:intergenic | 35.0% | |
| TTGTGAAGGAGGTTGAAAAA+TGG | - | chr2_4:55266407-55266426 | None:intergenic | 35.0% | |
| AGCTCAAAAAGTGGAAAATG+TGG | - | chr2_4:55266430-55266449 | None:intergenic | 35.0% | |
| GTTACTAGTAGCTCAAAAAG+TGG | - | chr2_4:55266439-55266458 | None:intergenic | 35.0% | |
| TGATAGGTTCAATGGTTTCT+TGG | + | chr2_4:55266567-55266586 | Msa0335990:CDS | 35.0% | |
| GATAGGTTCAATGGTTTCTT+GGG | + | chr2_4:55266568-55266587 | Msa0335990:CDS | 35.0% | |
| GCATTACTAAATTGGATGCT+TGG | + | chr2_4:55266884-55266903 | Msa0335990:intron | 35.0% | |
| ATTCGTTCGCTAATTAAAGG+CGG | - | chr2_4:55267025-55267044 | None:intergenic | 35.0% | |
| ! | ACATGTAGTGCAACTGTTTT+TGG | + | chr2_4:55267111-55267130 | Msa0335990:intron | 35.0% |
| AGGCATTTGTATGTTCAAGA+AGG | + | chr2_4:55267210-55267229 | Msa0335990:intron | 35.0% | |
| GGCATTTGTATGTTCAAGAA+GGG | + | chr2_4:55267211-55267230 | Msa0335990:intron | 35.0% | |
| TTTGTACATGTATAGGTGGA+AGG | + | chr2_4:55267333-55267352 | Msa0335990:intron | 35.0% | |
| TTGTACATGTATAGGTGGAA+GGG | + | chr2_4:55267334-55267353 | Msa0335990:intron | 35.0% | |
| TAATGCAGACAATAGTCAAG+AGG | + | chr2_4:55267368-55267387 | Msa0335990:CDS | 35.0% | |
| ATAGTCAAGAGGAACATGTT+AGG | + | chr2_4:55267379-55267398 | Msa0335990:CDS | 35.0% | |
| CAATGTACATCAATGTCTTC+GGG | - | chr2_4:55267429-55267448 | None:intergenic | 35.0% | |
| AGACATTGATGTACATTGTC+TGG | + | chr2_4:55267431-55267450 | Msa0335990:CDS | 35.0% | |
| TCATGTAACTGATTGGAGAA+AGG | + | chr2_4:55267737-55267756 | Msa0335990:intron | 35.0% | |
| TAGCTACACCATGCATTATT+TGG | + | chr2_4:55267861-55267880 | Msa0335990:intron | 35.0% | |
| AGCTACACCATGCATTATTT+GGG | + | chr2_4:55267862-55267881 | Msa0335990:intron | 35.0% | |
| AAAGGAGTTGAAGGAGTTAA+AGG | - | chr2_4:55268015-55268034 | None:intergenic | 35.0% | |
| ATATAGGGTAAAGGAGTTGA+AGG | - | chr2_4:55268024-55268043 | None:intergenic | 35.0% | |
| TGTCAAATACGCATGACATT+AGG | - | chr2_4:55268177-55268196 | None:intergenic | 35.0% | |
| !! | TTCTTGTACTTTTCAAGGCT+TGG | + | chr2_4:55268317-55268336 | Msa0335990:intron | 35.0% |
| !! | TACTTTTCAAGGCTTGGTTT+CGG | + | chr2_4:55268323-55268342 | Msa0335990:intron | 35.0% |
| TACATCAGCCATTAGATTGA+TGG | - | chr2_4:55268473-55268492 | None:intergenic | 35.0% | |
| GAAATGACTCGAAAAGTCTA+CGG | - | chr2_4:55268851-55268870 | None:intergenic | 35.0% | |
| !!! | GGAGTTTTTTTCGAGTGATT+CGG | - | chr2_4:55268955-55268974 | None:intergenic | 35.0% |
| ! | TTGTTGTCCTCTTGTCTTTT+TGG | - | chr2_4:55269126-55269145 | None:intergenic | 35.0% |
| ! | TGTGATCAATGGAAAAGTGT+CGG | + | chr2_4:55269148-55269167 | Msa0335990:CDS | 35.0% |
| TGTCATGGTGGCAATGAAAA+AGG | - | chr2_4:55266272-55266291 | None:intergenic | 40.0% | |
| AGAATGGAGAACTTCTGTCA+TGG | - | chr2_4:55266287-55266306 | None:intergenic | 40.0% | |
| ! | GAAGTTGAAGTTGAAGGTGT+TGG | - | chr2_4:55266346-55266365 | None:intergenic | 40.0% |
| AAGGAGGTTGAAAAATGGCA+TGG | - | chr2_4:55266402-55266421 | None:intergenic | 40.0% | |
| AGTGGAAAATGTGGTTGTGA+AGG | - | chr2_4:55266421-55266440 | None:intergenic | 40.0% | |
| TTGTTGCCACTACTCTTGAA+AGG | - | chr2_4:55266484-55266503 | None:intergenic | 40.0% | |
| CAACAAAGACGTTTGCAACA+TGG | + | chr2_4:55266498-55266517 | Msa0335990:CDS | 40.0% | |
| AAATCAGGTTCAAACTCGTC+AGG | - | chr2_4:55266598-55266617 | None:intergenic | 40.0% | |
| ! | TTGAACCTGATTTTCCCAGA+AGG | + | chr2_4:55266605-55266624 | Msa0335990:CDS | 40.0% |
| TACATATACCTAGCACTAGG+AGG | - | chr2_4:55266631-55266650 | None:intergenic | 40.0% | |
| ATTGATGTACATTGTCTGGC+AGG | + | chr2_4:55267435-55267454 | Msa0335990:CDS | 40.0% | |
| TTGTCTGGCAGGACTAATTA+AGG | + | chr2_4:55267446-55267465 | Msa0335990:CDS | 40.0% | |
| !! | ACTTTTCAAGGCTTGGTTTC+GGG | + | chr2_4:55268324-55268343 | Msa0335990:intron | 40.0% |
| CAATACAGTCTTCCTCAGTT+TGG | - | chr2_4:55268402-55268421 | None:intergenic | 40.0% | |
| !! | TTGGCTTTTCTGATTGCAGA+TGG | + | chr2_4:55268680-55268699 | Msa0335990:intron | 40.0% |
| TCCTCAACTGAAAGAGAATC+TGG | + | chr2_4:55268972-55268991 | Msa0335990:CDS | 40.0% | |
| TTTCCTCCGAAAAGAAACGT+GGG | + | chr2_4:55269050-55269069 | Msa0335990:CDS | 40.0% | |
| ! | TTCTTCCCCACGTTTCTTTT+CGG | - | chr2_4:55269059-55269078 | None:intergenic | 40.0% |
| AAAGGGTCCAAAAAGACAAG+AGG | + | chr2_4:55269116-55269135 | Msa0335990:CDS | 40.0% | |
| ! | GACACTTTTCCATTGATCAC+AGG | - | chr2_4:55269149-55269168 | None:intergenic | 40.0% |
| !! | AAAAGTGTCGGTCGAGAAAA+AGG | + | chr2_4:55269160-55269179 | Msa0335990:CDS | 40.0% |
| !! | AAAGTGTCGGTCGAGAAAAA+GGG | + | chr2_4:55269161-55269180 | Msa0335990:CDS | 40.0% |
| ATGGAGAACTTCTGTCATGG+TGG | - | chr2_4:55266284-55266303 | None:intergenic | 45.0% | |
| TGGCAAGAGAATGAAGAGAG+AGG | - | chr2_4:55266382-55266401 | None:intergenic | 45.0% | |
| GGAAAATGTGGTTGTGAAGG+AGG | - | chr2_4:55266418-55266437 | None:intergenic | 45.0% | |
| !!! | TCGCGCACGTTACTTTTGAT+AGG | + | chr2_4:55266551-55266570 | Msa0335990:CDS | 45.0% |
| GTATGTTCAAGAAGGGTTGC+AGG | + | chr2_4:55267218-55267237 | Msa0335990:intron | 45.0% | |
| GTTCGTTTCTTCTCCTTCAC+CGG | + | chr2_4:55267974-55267993 | Msa0335990:intron | 45.0% | |
| AAGGACCAGTGTTCAAACTC+CGG | - | chr2_4:55267996-55268015 | None:intergenic | 45.0% | |
| GGACTCATTATCACAAGAGC+AGG | + | chr2_4:55268366-55268385 | Msa0335990:CDS | 45.0% | |
| GGTAATGCAATGCCAAACTG+AGG | + | chr2_4:55268387-55268406 | Msa0335990:CDS | 45.0% | |
| TGAAGCTGCACTCTTGGATT+GGG | + | chr2_4:55268447-55268466 | Msa0335990:CDS | 45.0% | |
| GGATTGGGCCATCAATCTAA+TGG | + | chr2_4:55268462-55268481 | Msa0335990:CDS | 45.0% | |
| CATGTTTGGCGCAAAAACCA+TGG | - | chr2_4:55268539-55268558 | None:intergenic | 45.0% | |
| ! | TTTTGCGCCAAACATGACTC+AGG | + | chr2_4:55268543-55268562 | Msa0335990:CDS | 45.0% |
| GAACAGACCTGAGTCATGTT+TGG | - | chr2_4:55268553-55268572 | None:intergenic | 45.0% | |
| GCGTACATCAATGCAGTGAA+TGG | - | chr2_4:55268711-55268730 | None:intergenic | 45.0% | |
| AAGGACGCTACGAGAAAGAA+AGG | + | chr2_4:55268767-55268786 | Msa0335990:CDS | 45.0% | |
| CGGTGTACATTCTCATCAGA+AGG | - | chr2_4:55268831-55268850 | None:intergenic | 45.0% | |
| GCCAGATTCTCTTTCAGTTG+AGG | - | chr2_4:55268976-55268995 | None:intergenic | 45.0% | |
| GTTTCCTCCGAAAAGAAACG+TGG | + | chr2_4:55269049-55269068 | Msa0335990:CDS | 45.0% | |
| TTCCTCCGAAAAGAAACGTG+GGG | + | chr2_4:55269051-55269070 | Msa0335990:CDS | 45.0% | |
| GTGGGGAAGAATAACAAGTC+TGG | + | chr2_4:55269068-55269087 | Msa0335990:CDS | 45.0% | |
| GGACAACAACCTGTGATCAA+TGG | + | chr2_4:55269137-55269156 | Msa0335990:CDS | 45.0% | |
| !! | AAAAATATATAAAAAAAGAA+AGG | - | chr2_4:55266229-55266248 | None:intergenic | 5.0% |
| !! | AAATAAAAAAAAAGTTTAAT+TGG | - | chr2_4:55268575-55268594 | None:intergenic | 5.0% |
| !!! | ATTAAACTTTTTTTTTATTT+TGG | + | chr2_4:55268575-55268594 | Msa0335990:intron | 5.0% |
| ACATGGCGAACGTTAGTTGG+AGG | - | chr2_4:55266532-55266551 | None:intergenic | 50.0% | |
| CAAAAGTAACGTGCGCGACA+TGG | - | chr2_4:55266549-55266568 | None:intergenic | 50.0% | |
| CAGTGTTCAAACTCCGGTGA+AGG | - | chr2_4:55267990-55268009 | None:intergenic | 50.0% | |
| CTTCACCGGAGTTTGAACAC+TGG | + | chr2_4:55267988-55268007 | Msa0335990:intron | 50.0% | |
| TGGTTTCGGGAACTTCCTAG+CGG | + | chr2_4:55268337-55268356 | Msa0335990:CDS | 50.0% | |
| ! | AAGAGTGCAGCTTCAGCATG+AGG | - | chr2_4:55268442-55268461 | None:intergenic | 50.0% |
| TCATGCTGAAGCTGCACTCT+TGG | + | chr2_4:55268441-55268460 | Msa0335990:CDS | 50.0% | |
| CTGAAGCTGCACTCTTGGAT+TGG | + | chr2_4:55268446-55268465 | Msa0335990:CDS | 50.0% | |
| TGCAGCAGCAGACAATGAAG+AGG | + | chr2_4:55268884-55268903 | Msa0335990:CDS | 50.0% | |
| ! | TTCCCCACGTTTCTTTTCGG+AGG | - | chr2_4:55269056-55269075 | None:intergenic | 50.0% |
| CGGTCGAGAAAAAGGGAATG+AGG | + | chr2_4:55269168-55269187 | Msa0335990:CDS | 50.0% | |
| GCGACATGGCGAACGTTAGT+TGG | - | chr2_4:55266535-55266554 | None:intergenic | 55.0% | |
| ! | GGAGGCCTTCTGGGAAAATC+AGG | - | chr2_4:55266613-55266632 | None:intergenic | 55.0% |
| CTAGCACTAGGAGGCCTTCT+GGG | - | chr2_4:55266622-55266641 | None:intergenic | 55.0% | |
| AATGAGTCCAGAACGCCGCT+AGG | - | chr2_4:55268355-55268374 | None:intergenic | 55.0% | |
| GAATGCGCGCAACATTGCCA+TGG | + | chr2_4:55268519-55268538 | Msa0335990:CDS | 55.0% | |
| GATCAGACCGAGTCGAAGCT+TGG | + | chr2_4:55269213-55269232 | Msa0335990:CDS | 55.0% | |
| TTCACCGCCAAGCTTCGACT+CGG | - | chr2_4:55269223-55269242 | None:intergenic | 55.0% | |
| CCTAGCACTAGGAGGCCTTC+TGG | - | chr2_4:55266623-55266642 | None:intergenic | 60.0% | |
| CCAGAAGGCCTCCTAGTGCT+AGG | + | chr2_4:55266620-55266639 | Msa0335990:CDS | 60.0% | |
| GGAACTTCCTAGCGGCGTTC+TGG | + | chr2_4:55268345-55268364 | Msa0335990:CDS | 60.0% | |
| CAGACCGAGTCGAAGCTTGG+CGG | + | chr2_4:55269216-55269235 | Msa0335990:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 55265895 | 55269481 | 55265895 | ID=Msa0335990;Name=Msa0335990 |
| chr2_4 | mRNA | 55265895 | 55269481 | 55265895 | ID=Msa0335990-mRNA-1;Parent=Msa0335990;Name=Msa0335990-mRNA-1;_AED=0.17;_eAED=0.17;_QI=391|0.75|0.8|1|1|1|5|240|437 |
| chr2_4 | exon | 55265895 | 55266641 | 55265895 | ID=Msa0335990-mRNA-1:exon:16728;Parent=Msa0335990-mRNA-1 |
| chr2_4 | exon | 55267119 | 55267182 | 55267119 | ID=Msa0335990-mRNA-1:exon:16729;Parent=Msa0335990-mRNA-1 |
| chr2_4 | exon | 55267348 | 55267467 | 55267348 | ID=Msa0335990-mRNA-1:exon:16730;Parent=Msa0335990-mRNA-1 |
| chr2_4 | exon | 55268334 | 55268564 | 55268334 | ID=Msa0335990-mRNA-1:exon:16731;Parent=Msa0335990-mRNA-1 |
| chr2_4 | exon | 55268699 | 55269481 | 55268699 | ID=Msa0335990-mRNA-1:exon:16732;Parent=Msa0335990-mRNA-1 |
| chr2_4 | five_prime_UTR | 55265895 | 55266285 | 55265895 | ID=Msa0335990-mRNA-1:five_prime_utr;Parent=Msa0335990-mRNA-1 |
| chr2_4 | CDS | 55266286 | 55266641 | 55266286 | ID=Msa0335990-mRNA-1:cds;Parent=Msa0335990-mRNA-1 |
| chr2_4 | CDS | 55267119 | 55267182 | 55267119 | ID=Msa0335990-mRNA-1:cds;Parent=Msa0335990-mRNA-1 |
| chr2_4 | CDS | 55267348 | 55267467 | 55267348 | ID=Msa0335990-mRNA-1:cds;Parent=Msa0335990-mRNA-1 |
| chr2_4 | CDS | 55268334 | 55268564 | 55268334 | ID=Msa0335990-mRNA-1:cds;Parent=Msa0335990-mRNA-1 |
| chr2_4 | CDS | 55268699 | 55269241 | 55268699 | ID=Msa0335990-mRNA-1:cds;Parent=Msa0335990-mRNA-1 |
| chr2_4 | three_prime_UTR | 55269242 | 55269481 | 55269242 | ID=Msa0335990-mRNA-1:three_prime_utr;Parent=Msa0335990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
