Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1443430 | sp|Q9FMR1|RGAP1_ARATH | 55.802 | 405 | 132 | 7 | 52 | 437 | 90 | 466 | 1.07e-135 | 400 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1443430 | G7ITU3 | 89.035 | 456 | 26 | 2 | 1 | 437 | 1 | 451 | 0.0 | 806 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032040 | Msa1443430 | 0.801978 | 6.974755e-49 | -8.615850e-47 |
| Msa0040190 | Msa1443430 | 0.805586 | 1.242802e-49 | -8.615850e-47 |
| Msa0087880 | Msa1443430 | 0.804091 | 2.550945e-49 | -8.615850e-47 |
| Msa1390410 | Msa1443430 | 0.823375 | 1.433031e-53 | -8.615850e-47 |
| Msa0681040 | Msa1443430 | 0.801530 | 8.622267e-49 | -8.615850e-47 |
| Msa0747500 | Msa1443430 | -0.800073 | 1.710190e-48 | -8.615850e-47 |
| Msa0134550 | Msa1443430 | 0.810412 | 1.167668e-50 | -8.615850e-47 |
| Msa0189050 | Msa1443430 | 0.821283 | 4.385130e-53 | -8.615850e-47 |
| Msa0219140 | Msa1443430 | 0.897342 | 1.543494e-76 | -8.615850e-47 |
| Msa0231310 | Msa1443430 | 0.819532 | 1.105287e-52 | -8.615850e-47 |
| Msa1242390 | Msa1443430 | 0.805324 | 1.410458e-49 | -8.615850e-47 |
| Msa1041620 | Msa1443430 | 0.817400 | 3.362367e-52 | -8.615850e-47 |
| Msa1081650 | Msa1443430 | 0.817630 | 2.985384e-52 | -8.615850e-47 |
| Msa0258960 | Msa1443430 | 0.867353 | 1.457196e-65 | -8.615850e-47 |
| Msa0269360 | Msa1443430 | 0.801465 | 8.892047e-49 | -8.615850e-47 |
| Msa0298180 | Msa1443430 | 0.876680 | 1.152106e-68 | -8.615850e-47 |
| Msa0309160 | Msa1443430 | 0.822118 | 2.811222e-53 | -8.615850e-47 |
| Msa0335990 | Msa1443430 | 0.993427 | 1.156785e-199 | -8.615850e-47 |
| Msa1166520 | Msa1443430 | 0.815908 | 7.263166e-52 | -8.615850e-47 |
| Msa0504630 | Msa1443430 | 0.804736 | 1.871830e-49 | -8.615850e-47 |
| Msa0587060 | Msa1443430 | 0.801839 | 7.451926e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1443430 | MtrunA17_Chr2g0321541 | 89.035 | 456 | 26 | 2 | 1 | 437 | 1 | 451 | 0.0 | 806 |
| Msa1443430 | MtrunA17_Chr7g0266501 | 51.435 | 418 | 160 | 7 | 52 | 437 | 71 | 477 | 3.88e-132 | 389 |
| Msa1443430 | MtrunA17_Chr4g0026251 | 65.217 | 299 | 79 | 3 | 46 | 325 | 64 | 356 | 9.46e-131 | 381 |
| Msa1443430 | MtrunA17_Chr8g0346171 | 56.886 | 334 | 107 | 5 | 47 | 361 | 79 | 394 | 1.45e-117 | 352 |
| Msa1443430 | MtrunA17_Chr1g0196181 | 68.376 | 234 | 55 | 1 | 75 | 289 | 64 | 297 | 1.26e-109 | 332 |
| Msa1443430 | MtrunA17_Chr7g0268531 | 60.618 | 259 | 78 | 2 | 55 | 289 | 32 | 290 | 2.25e-97 | 298 |
| Msa1443430 | MtrunA17_Chr7g0250591 | 51.152 | 217 | 84 | 3 | 117 | 316 | 14 | 225 | 1.54e-62 | 201 |
| Msa1443430 | MtrunA17_Chr5g0426461 | 64.968 | 157 | 32 | 2 | 117 | 254 | 16 | 168 | 5.31e-61 | 196 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1443430 | AT5G22400.1 | 55.802 | 405 | 132 | 7 | 52 | 437 | 90 | 466 | 1.08e-136 | 400 |
| Msa1443430 | AT3G11490.1 | 54.237 | 354 | 104 | 5 | 25 | 328 | 19 | 364 | 3.89e-117 | 349 |
| Msa1443430 | AT2G46710.1 | 60.137 | 291 | 93 | 3 | 21 | 289 | 44 | 333 | 2.79e-112 | 338 |
| Msa1443430 | AT1G08340.1 | 64.898 | 245 | 67 | 1 | 78 | 303 | 1 | 245 | 1.15e-111 | 332 |
| Msa1443430 | AT4G03100.1 | 59.851 | 269 | 78 | 2 | 50 | 288 | 39 | 307 | 9.63e-108 | 325 |
Find 91 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAAGGTTGCAAATTTCTA+AGG | 0.198022 | tig0030443:+35698 | Msa1443430:three_prime_UTR |
| TCTTGAAAATGCTTATATTA+AGG | 0.202458 | tig0030443:+35144 | Msa1443430:CDS |
| GTAAGTTTGTTTAAAGTATA+AGG | 0.221431 | tig0030443:+35682 | Msa1443430:three_prime_UTR |
| ATATTATTTGTTGCGTGTTT+TGG | 0.231978 | tig0030443:-32427 | None:intergenic |
| TGATAGGTTCAATGGTTTCT+TGG | 0.248536 | tig0030443:+32967 | Msa1443430:CDS |
| CCTAGCACTAGGAGGCCTTC+TGG | 0.256375 | tig0030443:-33020 | None:intergenic |
| AAAAGTGTCGGTCGAGAAAA+AGG | 0.290122 | tig0030443:+35556 | Msa1443430:CDS |
| TGTCATGGTGGCAATGAAAA+AGG | 0.303033 | tig0030443:-32669 | None:intergenic |
| GGAACTTCCTAGCGGCGTTC+TGG | 0.311234 | tig0030443:+34742 | Msa1443430:CDS |
| GATAGGTTCAATGGTTTCTT+GGG | 0.327251 | tig0030443:+32968 | Msa1443430:CDS |
| TTGTCTGGCAGGACTAATTA+AGG | 0.347959 | tig0030443:+33846 | Msa1443430:CDS |
| GAAGGTTCTAAATTCAATCT+TGG | 0.352625 | tig0030443:-35206 | None:intergenic |
| CAATACAGTCTTCCTCAGTT+TGG | 0.354458 | tig0030443:-34796 | None:intergenic |
| CTGAAGCTGCACTCTTGGAT+TGG | 0.367227 | tig0030443:+34843 | Msa1443430:CDS |
| GAAGTTGAAGTTGAAGTTGA+AGG | 0.390622 | tig0030443:-32749 | None:intergenic |
| TCCTCAACTGAAAGAGAATC+TGG | 0.397060 | tig0030443:+35368 | Msa1443430:CDS |
| GTTGTTGTGTAACATGTTGT+TGG | 0.400032 | tig0030443:+32334 | Msa1443430:five_prime_UTR |
| AGTAGTTCAAATGCTAGAAA+AGG | 0.402969 | tig0030443:+35494 | Msa1443430:CDS |
| TCATGCTGAAGCTGCACTCT+TGG | 0.410731 | tig0030443:+34838 | Msa1443430:CDS |
| GAACAGACCTGAGTCATGTT+TGG | 0.422768 | tig0030443:-34947 | None:intergenic |
| CTAGCACTAGGAGGCCTTCT+GGG | 0.423002 | tig0030443:-33019 | None:intergenic |
| TACATCAGCCATTAGATTGA+TGG | 0.431052 | tig0030443:-34867 | None:intergenic |
| ACAATGTACATCAATGTCTT+CGG | 0.436039 | tig0030443:-33827 | None:intergenic |
| CAATGTACATCAATGTCTTC+GGG | 0.437265 | tig0030443:-33826 | None:intergenic |
| GGAGGCCTTCTGGGAAAATC+AGG | 0.439195 | tig0030443:-33010 | None:intergenic |
| GTTAGGAATCAATTGAACTT+AGG | 0.440142 | tig0030443:+33796 | Msa1443430:CDS |
| AGACATTGATGTACATTGTC+TGG | 0.451823 | tig0030443:+33831 | Msa1443430:CDS |
| GGATTGGGCCATCAATCTAA+TGG | 0.467322 | tig0030443:+34859 | Msa1443430:CDS |
| TGAAGCTGCACTCTTGGATT+GGG | 0.473582 | tig0030443:+34844 | Msa1443430:CDS |
| AAGTAAAATGAGGTGGAGAA+TGG | 0.481632 | tig0030443:-32700 | None:intergenic |
| ATAGTCAAGAGGAACATGTT+AGG | 0.482181 | tig0030443:+33779 | Msa1443430:CDS |
| GCGTACATCAATGCAGTGAA+TGG | 0.486250 | tig0030443:-35104 | None:intergenic |
| AAATCAGGTTCAAACTCGTC+AGG | 0.491520 | tig0030443:-32995 | None:intergenic |
| GCCAGATTCTCTTTCAGTTG+AGG | 0.491573 | tig0030443:-35369 | None:intergenic |
| GGACAACAACCTGTGATCAA+TGG | 0.493660 | tig0030443:+35533 | Msa1443430:CDS |
| GAATCAATTGAACTTAGGAT+TGG | 0.495739 | tig0030443:+33801 | Msa1443430:CDS |
| GTAGTTCAAATGCTAGAAAA+GGG | 0.502633 | tig0030443:+35495 | Msa1443430:CDS |
| TGTTACACAACAACATTGAA+AGG | 0.509170 | tig0030443:-32325 | None:intergenic |
| CAAAAGTAACGTGCGCGACA+TGG | 0.509730 | tig0030443:-32946 | None:intergenic |
| AAAAGGAAGAGTAGAGCTAA+AGG | 0.510961 | tig0030443:-32297 | None:intergenic |
| GATCAGACCGAGTCGAAGCT+TGG | 0.514597 | tig0030443:+35609 | Msa1443430:CDS |
| AACATTGAAAGGGAAACAAA+AGG | 0.515029 | tig0030443:-32314 | None:intergenic |
| TACTTTAAACAAACTTACAA+AGG | 0.523846 | tig0030443:-35677 | None:intergenic |
| TTCACCGCCAAGCTTCGACT+CGG | 0.526197 | tig0030443:-35616 | None:intergenic |
| GGACTCATTATCACAAGAGC+AGG | 0.528004 | tig0030443:+34763 | Msa1443430:CDS |
| GTGGGGAAGAATAACAAGTC+TGG | 0.528840 | tig0030443:+35464 | Msa1443430:CDS |
| TTTGTACATGTATAGGTGGA+AGG | 0.531414 | tig0030443:+33733 | Msa1443430:intron |
| AAGGACGCTACGAGAAAGAA+AGG | 0.533822 | tig0030443:+35163 | Msa1443430:CDS |
| GTTACACAACAACATTGAAA+GGG | 0.536375 | tig0030443:-32324 | None:intergenic |
| TTGTTGCCACTACTCTTGAA+AGG | 0.537642 | tig0030443:-32881 | None:intergenic |
| GCGACATGGCGAACGTTAGT+TGG | 0.540156 | tig0030443:-32932 | None:intergenic |
| TTATTTCCTTTCAAGAGTAG+TGG | 0.553770 | tig0030443:+32875 | Msa1443430:CDS |
| ATAAGGTTGCAAATTTCTAA+GGG | 0.554414 | tig0030443:+35699 | Msa1443430:three_prime_UTR |
| ATTGATGTACATTGTCTGGC+AGG | 0.558765 | tig0030443:+33835 | Msa1443430:CDS |
| TTGTACATGTATAGGTGGAA+GGG | 0.562108 | tig0030443:+33734 | Msa1443430:intron |
| AAATGAGAAATAGTAAGACT+TGG | 0.562992 | tig0030443:-32534 | None:intergenic |
| CCAGAAGGCCTCCTAGTGCT+AGG | 0.566429 | tig0030443:+33020 | Msa1443430:CDS |
| GAAATGACTCGAAAAGTCTA+CGG | 0.568493 | tig0030443:-35244 | None:intergenic |
| CGGTGTACATTCTCATCAGA+AGG | 0.569866 | tig0030443:-35224 | None:intergenic |
| CAACAAAGACGTTTGCAACA+TGG | 0.570037 | tig0030443:+32898 | Msa1443430:CDS |
| GGAATCAGATTTCATTACAA+TGG | 0.570601 | tig0030443:-35857 | None:intergenic |
| GAAGTTGAAGTTGAAGGTGT+TGG | 0.580577 | tig0030443:-32743 | None:intergenic |
| AATGAGTCCAGAACGCCGCT+AGG | 0.582282 | tig0030443:-34749 | None:intergenic |
| GGAAAATGTGGTTGTGAAGG+AGG | 0.586388 | tig0030443:-32815 | None:intergenic |
| TGAGAATCTAATTTGCAATG+AGG | 0.590817 | tig0030443:+35409 | Msa1443430:CDS |
| AAGAGTGCAGCTTCAGCATG+AGG | 0.593298 | tig0030443:-34836 | None:intergenic |
| CAGTTATCTTATGATTCAAG+AGG | 0.593577 | tig0030443:+33553 | Msa1443430:CDS |
| TAATGCAGACAATAGTCAAG+AGG | 0.607790 | tig0030443:+33768 | Msa1443430:CDS |
| ACATGGCGAACGTTAGTTGG+AGG | 0.610488 | tig0030443:-32929 | None:intergenic |
| AGTGGAAAATGTGGTTGTGA+AGG | 0.613159 | tig0030443:-32818 | None:intergenic |
| GAATGCGCGCAACATTGCCA+TGG | 0.614312 | tig0030443:+34916 | Msa1443430:CDS |
| TATTACATATACCTAGCACT+AGG | 0.623924 | tig0030443:-33031 | None:intergenic |
| TGCAGCAGCAGACAATGAAG+AGG | 0.625545 | tig0030443:+35280 | Msa1443430:CDS |
| AGTTAGAATGAAGAAAAGTG+TGG | 0.627548 | tig0030443:-32488 | None:intergenic |
| TATATAAGTTAAACAAACAC+AGG | 0.627876 | tig0030443:-35763 | None:intergenic |
| GTTAGAATGAAGAAAAGTGT+GGG | 0.630052 | tig0030443:-32487 | None:intergenic |
| TGGCAAGAGAATGAAGAGAG+AGG | 0.631862 | tig0030443:-32779 | None:intergenic |
| TGTGATCAATGGAAAAGTGT+CGG | 0.637614 | tig0030443:+35544 | Msa1443430:CDS |
| AAGACTGTATTGAATTAGTG+AGG | 0.637862 | tig0030443:+34807 | Msa1443430:CDS |
| AGTTATCTTATGATTCAAGA+GGG | 0.643572 | tig0030443:+33554 | Msa1443430:CDS |
| TACATATACCTAGCACTAGG+AGG | 0.645242 | tig0030443:-33028 | None:intergenic |
| TTTCCTCCGAAAAGAAACGT+GGG | 0.647448 | tig0030443:+35446 | Msa1443430:CDS |
| GATGATGAAGTAAAATGAGG+TGG | 0.654198 | tig0030443:-32707 | None:intergenic |
| GTTGATGATGAAGTAAAATG+AGG | 0.658128 | tig0030443:-32710 | None:intergenic |
| CAGACCGAGTCGAAGCTTGG+CGG | 0.664957 | tig0030443:+35612 | Msa1443430:CDS |
| GTTTCCTCCGAAAAGAAACG+TGG | 0.672738 | tig0030443:+35445 | Msa1443430:CDS |
| GGTAATGCAATGCCAAACTG+AGG | 0.689673 | tig0030443:+34784 | Msa1443430:CDS |
| AGAATGGAGAACTTCTGTCA+TGG | 0.691349 | tig0030443:-32684 | None:intergenic |
| TTCCTCCGAAAAGAAACGTG+GGG | 0.693572 | tig0030443:+35447 | Msa1443430:CDS |
| ATGGAGAACTTCTGTCATGG+TGG | 0.693833 | tig0030443:-32681 | None:intergenic |
| TGGTTTCGGGAACTTCCTAG+CGG | 0.730728 | tig0030443:+34734 | Msa1443430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGAAAGAAAAAAAAAAC+TGG | - | tig0030443:33130-33149 | None:intergenic | 15.0% |
| !!! | TATAAAAGCATTAATGAAAA+AGG | - | tig0030443:34658-34677 | None:intergenic | 15.0% |
| !!! | TATTTTCTGAATTAAGAAAG+TGG | - | tig0030443:32594-32613 | None:intergenic | 20.0% |
| !! | TACTAAACAAAAATCAGATA+TGG | - | tig0030443:33153-33172 | None:intergenic | 20.0% |
| !! | TTAGTAGTGTATATAATTCA+TGG | + | tig0030443:33167-33186 | Msa1443430:intron | 20.0% |
| !! | ACCATTTATATGTCATAATT+TGG | + | tig0030443:33242-33261 | Msa1443430:intron | 20.0% |
| !! | TCCAAATTATGACATATAAA+TGG | - | tig0030443:33246-33265 | None:intergenic | 20.0% |
| !! | TCATAATTTGGATTGAATAA+GGG | + | tig0030443:33254-33273 | Msa1443430:intron | 20.0% |
| !! | AACTATGCTAAGAAAAATAT+AGG | + | tig0030443:33382-33401 | Msa1443430:intron | 20.0% |
| !! | AAAATCAAACAAAAAAAGAG+AGG | - | tig0030443:33490-33509 | None:intergenic | 20.0% |
| !! | ATTATTTGGGAATGTAAATT+GGG | + | tig0030443:34274-34293 | Msa1443430:intron | 20.0% |
| !!! | TTCAAGTTAATCACAATATT+TGG | + | tig0030443:35057-35076 | Msa1443430:intron | 20.0% |
| !! | TCTTGAAAATGCTTATATTA+AGG | + | tig0030443:35144-35163 | Msa1443430:CDS | 20.0% |
| !! | TACTTTAAACAAACTTACAA+AGG | - | tig0030443:35680-35699 | None:intergenic | 20.0% |
| !!! | GTAAGTTTGTTTAAAGTATA+AGG | + | tig0030443:35682-35701 | Msa1443430:three_prime_UTR | 20.0% |
| !! | TATATAAGTTAAACAAACAC+AGG | - | tig0030443:35766-35785 | None:intergenic | 20.0% |
| !!! | ATATTATTTGTTGCGTGTTT+TGG | - | tig0030443:32430-32449 | None:intergenic | 25.0% |
| !! | ATCATGAAGTGAGTATTTTA+AGG | - | tig0030443:32459-32478 | None:intergenic | 25.0% |
| ! | AAATGAGAAATAGTAAGACT+TGG | - | tig0030443:32537-32556 | None:intergenic | 25.0% |
| ! | GTCATAATTTGGATTGAATA+AGG | + | tig0030443:33253-33272 | Msa1443430:intron | 25.0% |
| ! | GAGGAAAAAGTAAAACAAAA+AGG | - | tig0030443:33471-33490 | None:intergenic | 25.0% |
| ! | AGTTATCTTATGATTCAAGA+GGG | + | tig0030443:33554-33573 | Msa1443430:CDS | 25.0% |
| !!! | ACTAGTTCAATTATTTTGCT+TGG | + | tig0030443:33697-33716 | Msa1443430:intron | 25.0% |
| ! | AGTTGAATTTGTACATGTAT+AGG | + | tig0030443:33726-33745 | Msa1443430:intron | 25.0% |
| ! | AAAGAAGGTGAAAAAATTCT+TGG | - | tig0030443:34031-34050 | None:intergenic | 25.0% |
| !!! | TTTTTTCACCTTCTTTAGAA+AGG | + | tig0030443:34035-34054 | Msa1443430:intron | 25.0% |
| !!! | GTTTTAAACCTTTCTAAAGA+AGG | - | tig0030443:34046-34065 | None:intergenic | 25.0% |
| ! | TTTGTCTCATTTATTAGACT+TGG | - | tig0030443:34189-34208 | None:intergenic | 25.0% |
| ! | CATTATTTGGGAATGTAAAT+TGG | + | tig0030443:34273-34292 | Msa1443430:intron | 25.0% |
| ! | ATATATCCTGTAGTTATGAA+TGG | + | tig0030443:34303-34322 | Msa1443430:intron | 25.0% |
| ! | AGCTAACATAACAACATATA+GGG | - | tig0030443:34436-34455 | None:intergenic | 25.0% |
| ! | TAGCTAACATAACAACATAT+AGG | - | tig0030443:34437-34456 | None:intergenic | 25.0% |
| ! | ATTTCAAAGATGAAAATGCA+CGG | - | tig0030443:34612-34631 | None:intergenic | 25.0% |
| !! | TGATATTCTTGTACTTTTCA+AGG | + | tig0030443:34709-34728 | Msa1443430:intron | 25.0% |
| ! | GCTAAACTATTATTAGTTCA+TGG | + | tig0030443:35007-35026 | Msa1443430:intron | 25.0% |
| ! | TATAAGGTTGCAAATTTCTA+AGG | + | tig0030443:35698-35717 | Msa1443430:three_prime_UTR | 25.0% |
| ! | ATAAGGTTGCAAATTTCTAA+GGG | + | tig0030443:35699-35718 | Msa1443430:three_prime_UTR | 25.0% |
| AACATTGAAAGGGAAACAAA+AGG | - | tig0030443:32317-32336 | None:intergenic | 30.0% | |
| GTTACACAACAACATTGAAA+GGG | - | tig0030443:32327-32346 | None:intergenic | 30.0% | |
| TGTTACACAACAACATTGAA+AGG | - | tig0030443:32328-32347 | None:intergenic | 30.0% | |
| ! | GTTAGAATGAAGAAAAGTGT+GGG | - | tig0030443:32490-32509 | None:intergenic | 30.0% |
| AGTTAGAATGAAGAAAAGTG+TGG | - | tig0030443:32491-32510 | None:intergenic | 30.0% | |
| !! | GTTGATGATGAAGTAAAATG+AGG | - | tig0030443:32713-32732 | None:intergenic | 30.0% |
| TTATTTCCTTTCAAGAGTAG+TGG | + | tig0030443:32875-32894 | Msa1443430:CDS | 30.0% | |
| !!! | GTTACTTTTGATAGGTTCAA+TGG | + | tig0030443:32959-32978 | Msa1443430:CDS | 30.0% |
| TATTACATATACCTAGCACT+AGG | - | tig0030443:33034-33053 | None:intergenic | 30.0% | |
| GTGACAATGCATTACTAAAT+TGG | + | tig0030443:33276-33295 | Msa1443430:intron | 30.0% | |
| ATGATTCGTTCGCTAATTAA+AGG | - | tig0030443:33428-33447 | None:intergenic | 30.0% | |
| CAGTTATCTTATGATTCAAG+AGG | + | tig0030443:33553-33572 | Msa1443430:CDS | 30.0% | |
| TGCATTAACAGAAGAATTGT+TGG | - | tig0030443:33589-33608 | None:intergenic | 30.0% | |
| CAATTCTTCTGTTAATGCAA+AGG | + | tig0030443:33590-33609 | Msa1443430:intron | 30.0% | |
| TGAATTTGTACATGTATAGG+TGG | + | tig0030443:33729-33748 | Msa1443430:intron | 30.0% | |
| GTTAGGAATCAATTGAACTT+AGG | + | tig0030443:33796-33815 | Msa1443430:CDS | 30.0% | |
| GAATCAATTGAACTTAGGAT+TGG | + | tig0030443:33801-33820 | Msa1443430:CDS | 30.0% | |
| ACAATGTACATCAATGTCTT+CGG | - | tig0030443:33830-33849 | None:intergenic | 30.0% | |
| GTTTAGTGAATTGATCTGAA+TGG | + | tig0030443:33932-33951 | Msa1443430:intron | 30.0% | |
| TGATTCATCATGTAACTGAT+TGG | + | tig0030443:34129-34148 | Msa1443430:intron | 30.0% | |
| !! | ACATCATTTTCAAGACACAT+TGG | + | tig0030443:34213-34232 | Msa1443430:intron | 30.0% |
| TTACATTCCCAAATAATGCA+TGG | - | tig0030443:34271-34290 | None:intergenic | 30.0% | |
| AAACTACCATTCATAACTAC+AGG | - | tig0030443:34312-34331 | None:intergenic | 30.0% | |
| CATAACAACATATAGGGTAA+AGG | - | tig0030443:34430-34449 | None:intergenic | 30.0% | |
| ! | AGTTTCTAGGTGTGTATTTA+GGG | - | tig0030443:34488-34507 | None:intergenic | 30.0% |
| ! | TAGTTTCTAGGTGTGTATTT+AGG | - | tig0030443:34489-34508 | None:intergenic | 30.0% |
| ! | ACACAAGTATTGTAGTTTCT+AGG | - | tig0030443:34501-34520 | None:intergenic | 30.0% |
| AAGACTGTATTGAATTAGTG+AGG | + | tig0030443:34807-34826 | Msa1443430:CDS | 30.0% | |
| TCTGATAGTACTTATACCTT+AGG | + | tig0030443:35034-35053 | Msa1443430:intron | 30.0% | |
| ! | TTGTGATTAACTTGAACCTA+AGG | - | tig0030443:35053-35072 | None:intergenic | 30.0% |
| !! | GAAGGTTCTAAATTCAATCT+TGG | - | tig0030443:35209-35228 | None:intergenic | 30.0% |
| ! | TGAGAATCTAATTTGCAATG+AGG | + | tig0030443:35409-35428 | Msa1443430:CDS | 30.0% |
| AGTAGTTCAAATGCTAGAAA+AGG | + | tig0030443:35494-35513 | Msa1443430:CDS | 30.0% | |
| GTAGTTCAAATGCTAGAAAA+GGG | + | tig0030443:35495-35514 | Msa1443430:CDS | 30.0% | |
| AAAAGGAAGAGTAGAGCTAA+AGG | - | tig0030443:32300-32319 | None:intergenic | 35.0% | |
| GTTGTTGTGTAACATGTTGT+TGG | + | tig0030443:32334-32353 | Msa1443430:five_prime_UTR | 35.0% | |
| ! | GTTTTGTGTGTTAGATAGAG+TGG | - | tig0030443:32377-32396 | None:intergenic | 35.0% |
| !! | TTTTGAGTATTGTGTTGAGC+TGG | - | tig0030443:32514-32533 | None:intergenic | 35.0% |
| AAGTAAAATGAGGTGGAGAA+TGG | - | tig0030443:32703-32722 | None:intergenic | 35.0% | |
| GATGATGAAGTAAAATGAGG+TGG | - | tig0030443:32710-32729 | None:intergenic | 35.0% | |
| GAAGTTGAAGTTGAAGTTGA+AGG | - | tig0030443:32752-32771 | None:intergenic | 35.0% | |
| TTGTGAAGGAGGTTGAAAAA+TGG | - | tig0030443:32807-32826 | None:intergenic | 35.0% | |
| AGCTCAAAAAGTGGAAAATG+TGG | - | tig0030443:32830-32849 | None:intergenic | 35.0% | |
| GTTACTAGTAGCTCAAAAAG+TGG | - | tig0030443:32839-32858 | None:intergenic | 35.0% | |
| TGATAGGTTCAATGGTTTCT+TGG | + | tig0030443:32967-32986 | Msa1443430:CDS | 35.0% | |
| GATAGGTTCAATGGTTTCTT+GGG | + | tig0030443:32968-32987 | Msa1443430:CDS | 35.0% | |
| GCATTACTAAATTGGATGCT+TGG | + | tig0030443:33284-33303 | Msa1443430:intron | 35.0% | |
| ATTCGTTCGCTAATTAAAGG+CGG | - | tig0030443:33425-33444 | None:intergenic | 35.0% | |
| ! | ACATGTAGTGCAACTGTTTT+TGG | + | tig0030443:33511-33530 | Msa1443430:intron | 35.0% |
| AGGCATTTGTATGTTCAAGA+AGG | + | tig0030443:33610-33629 | Msa1443430:intron | 35.0% | |
| GGCATTTGTATGTTCAAGAA+GGG | + | tig0030443:33611-33630 | Msa1443430:intron | 35.0% | |
| TTTGTACATGTATAGGTGGA+AGG | + | tig0030443:33733-33752 | Msa1443430:intron | 35.0% | |
| TTGTACATGTATAGGTGGAA+GGG | + | tig0030443:33734-33753 | Msa1443430:intron | 35.0% | |
| TAATGCAGACAATAGTCAAG+AGG | + | tig0030443:33768-33787 | Msa1443430:CDS | 35.0% | |
| ATAGTCAAGAGGAACATGTT+AGG | + | tig0030443:33779-33798 | Msa1443430:CDS | 35.0% | |
| CAATGTACATCAATGTCTTC+GGG | - | tig0030443:33829-33848 | None:intergenic | 35.0% | |
| AGACATTGATGTACATTGTC+TGG | + | tig0030443:33831-33850 | Msa1443430:CDS | 35.0% | |
| TCATGTAACTGATTGGAGAA+AGG | + | tig0030443:34136-34155 | Msa1443430:intron | 35.0% | |
| TAGCTACACCATGCATTATT+TGG | + | tig0030443:34260-34279 | Msa1443430:intron | 35.0% | |
| AGCTACACCATGCATTATTT+GGG | + | tig0030443:34261-34280 | Msa1443430:intron | 35.0% | |
| AAAGGAGTTGAAGGAGTTAA+AGG | - | tig0030443:34412-34431 | None:intergenic | 35.0% | |
| ATATAGGGTAAAGGAGTTGA+AGG | - | tig0030443:34421-34440 | None:intergenic | 35.0% | |
| TGTCAAATACGCATGACATT+AGG | - | tig0030443:34574-34593 | None:intergenic | 35.0% | |
| !! | TTCTTGTACTTTTCAAGGCT+TGG | + | tig0030443:34714-34733 | Msa1443430:intron | 35.0% |
| !! | TACTTTTCAAGGCTTGGTTT+CGG | + | tig0030443:34720-34739 | Msa1443430:intron | 35.0% |
| TACATCAGCCATTAGATTGA+TGG | - | tig0030443:34870-34889 | None:intergenic | 35.0% | |
| GAAATGACTCGAAAAGTCTA+CGG | - | tig0030443:35247-35266 | None:intergenic | 35.0% | |
| !!! | GGAGTTTTTTTCGAGTGATT+CGG | - | tig0030443:35351-35370 | None:intergenic | 35.0% |
| ! | TTGTTGTCCTCTTGTCTTTT+TGG | - | tig0030443:35522-35541 | None:intergenic | 35.0% |
| ! | TGTGATCAATGGAAAAGTGT+CGG | + | tig0030443:35544-35563 | Msa1443430:CDS | 35.0% |
| TGTCATGGTGGCAATGAAAA+AGG | - | tig0030443:32672-32691 | None:intergenic | 40.0% | |
| AGAATGGAGAACTTCTGTCA+TGG | - | tig0030443:32687-32706 | None:intergenic | 40.0% | |
| ! | GAAGTTGAAGTTGAAGGTGT+TGG | - | tig0030443:32746-32765 | None:intergenic | 40.0% |
| AAGGAGGTTGAAAAATGGCA+TGG | - | tig0030443:32802-32821 | None:intergenic | 40.0% | |
| AGTGGAAAATGTGGTTGTGA+AGG | - | tig0030443:32821-32840 | None:intergenic | 40.0% | |
| TTGTTGCCACTACTCTTGAA+AGG | - | tig0030443:32884-32903 | None:intergenic | 40.0% | |
| CAACAAAGACGTTTGCAACA+TGG | + | tig0030443:32898-32917 | Msa1443430:CDS | 40.0% | |
| AAATCAGGTTCAAACTCGTC+AGG | - | tig0030443:32998-33017 | None:intergenic | 40.0% | |
| ! | TTGAACCTGATTTTCCCAGA+AGG | + | tig0030443:33005-33024 | Msa1443430:CDS | 40.0% |
| TACATATACCTAGCACTAGG+AGG | - | tig0030443:33031-33050 | None:intergenic | 40.0% | |
| ATTGATGTACATTGTCTGGC+AGG | + | tig0030443:33835-33854 | Msa1443430:CDS | 40.0% | |
| TTGTCTGGCAGGACTAATTA+AGG | + | tig0030443:33846-33865 | Msa1443430:CDS | 40.0% | |
| !! | ACTTTTCAAGGCTTGGTTTC+GGG | + | tig0030443:34721-34740 | Msa1443430:intron | 40.0% |
| CAATACAGTCTTCCTCAGTT+TGG | - | tig0030443:34799-34818 | None:intergenic | 40.0% | |
| !! | TTGGCTTTTCTGATTGCAGA+TGG | + | tig0030443:35076-35095 | Msa1443430:intron | 40.0% |
| TCCTCAACTGAAAGAGAATC+TGG | + | tig0030443:35368-35387 | Msa1443430:CDS | 40.0% | |
| TTTCCTCCGAAAAGAAACGT+GGG | + | tig0030443:35446-35465 | Msa1443430:CDS | 40.0% | |
| ! | TTCTTCCCCACGTTTCTTTT+CGG | - | tig0030443:35455-35474 | None:intergenic | 40.0% |
| AAAGGGTCCAAAAAGACAAG+AGG | + | tig0030443:35512-35531 | Msa1443430:CDS | 40.0% | |
| ! | GACACTTTTCCATTGATCAC+AGG | - | tig0030443:35545-35564 | None:intergenic | 40.0% |
| !! | AAAAGTGTCGGTCGAGAAAA+AGG | + | tig0030443:35556-35575 | Msa1443430:CDS | 40.0% |
| !! | AAAGTGTCGGTCGAGAAAAA+GGG | + | tig0030443:35557-35576 | Msa1443430:CDS | 40.0% |
| ATGGAGAACTTCTGTCATGG+TGG | - | tig0030443:32684-32703 | None:intergenic | 45.0% | |
| TGGCAAGAGAATGAAGAGAG+AGG | - | tig0030443:32782-32801 | None:intergenic | 45.0% | |
| GGAAAATGTGGTTGTGAAGG+AGG | - | tig0030443:32818-32837 | None:intergenic | 45.0% | |
| !!! | TCGCGCACGTTACTTTTGAT+AGG | + | tig0030443:32951-32970 | Msa1443430:CDS | 45.0% |
| GTATGTTCAAGAAGGGTTGC+AGG | + | tig0030443:33618-33637 | Msa1443430:intron | 45.0% | |
| GTTCGTTTCTTCTCCTTCAC+CGG | + | tig0030443:34371-34390 | Msa1443430:intron | 45.0% | |
| AAGGACCAGTGTTCAAACTC+CGG | - | tig0030443:34393-34412 | None:intergenic | 45.0% | |
| GGACTCATTATCACAAGAGC+AGG | + | tig0030443:34763-34782 | Msa1443430:CDS | 45.0% | |
| GGTAATGCAATGCCAAACTG+AGG | + | tig0030443:34784-34803 | Msa1443430:CDS | 45.0% | |
| TGAAGCTGCACTCTTGGATT+GGG | + | tig0030443:34844-34863 | Msa1443430:CDS | 45.0% | |
| GGATTGGGCCATCAATCTAA+TGG | + | tig0030443:34859-34878 | Msa1443430:CDS | 45.0% | |
| CATGTTTGGCGCAAAAACCA+TGG | - | tig0030443:34936-34955 | None:intergenic | 45.0% | |
| ! | TTTTGCGCCAAACATGACTC+AGG | + | tig0030443:34940-34959 | Msa1443430:CDS | 45.0% |
| GAACAGACCTGAGTCATGTT+TGG | - | tig0030443:34950-34969 | None:intergenic | 45.0% | |
| GCGTACATCAATGCAGTGAA+TGG | - | tig0030443:35107-35126 | None:intergenic | 45.0% | |
| AAGGACGCTACGAGAAAGAA+AGG | + | tig0030443:35163-35182 | Msa1443430:CDS | 45.0% | |
| CGGTGTACATTCTCATCAGA+AGG | - | tig0030443:35227-35246 | None:intergenic | 45.0% | |
| GCCAGATTCTCTTTCAGTTG+AGG | - | tig0030443:35372-35391 | None:intergenic | 45.0% | |
| GTTTCCTCCGAAAAGAAACG+TGG | + | tig0030443:35445-35464 | Msa1443430:CDS | 45.0% | |
| TTCCTCCGAAAAGAAACGTG+GGG | + | tig0030443:35447-35466 | Msa1443430:CDS | 45.0% | |
| GTGGGGAAGAATAACAAGTC+TGG | + | tig0030443:35464-35483 | Msa1443430:CDS | 45.0% | |
| GGACAACAACCTGTGATCAA+TGG | + | tig0030443:35533-35552 | Msa1443430:CDS | 45.0% | |
| !! | AAAAATATATAAAAAAAGAA+AGG | - | tig0030443:32629-32648 | None:intergenic | 5.0% |
| !! | AAAATAAAAAAAAGTTTAAT+TGG | - | tig0030443:34972-34991 | None:intergenic | 5.0% |
| !!! | AATTAAACTTTTTTTTATTT+TGG | + | tig0030443:34971-34990 | Msa1443430:intron | 5.0% |
| ACATGGCGAACGTTAGTTGG+AGG | - | tig0030443:32932-32951 | None:intergenic | 50.0% | |
| CAAAAGTAACGTGCGCGACA+TGG | - | tig0030443:32949-32968 | None:intergenic | 50.0% | |
| CAGTGTTCAAACTCCGGTGA+AGG | - | tig0030443:34387-34406 | None:intergenic | 50.0% | |
| CTTCACCGGAGTTTGAACAC+TGG | + | tig0030443:34385-34404 | Msa1443430:intron | 50.0% | |
| TGGTTTCGGGAACTTCCTAG+CGG | + | tig0030443:34734-34753 | Msa1443430:CDS | 50.0% | |
| ! | AAGAGTGCAGCTTCAGCATG+AGG | - | tig0030443:34839-34858 | None:intergenic | 50.0% |
| TCATGCTGAAGCTGCACTCT+TGG | + | tig0030443:34838-34857 | Msa1443430:CDS | 50.0% | |
| CTGAAGCTGCACTCTTGGAT+TGG | + | tig0030443:34843-34862 | Msa1443430:CDS | 50.0% | |
| TGCAGCAGCAGACAATGAAG+AGG | + | tig0030443:35280-35299 | Msa1443430:CDS | 50.0% | |
| ! | TTCCCCACGTTTCTTTTCGG+AGG | - | tig0030443:35452-35471 | None:intergenic | 50.0% |
| CGGTCGAGAAAAAGGGAATG+AGG | + | tig0030443:35564-35583 | Msa1443430:CDS | 50.0% | |
| GCGACATGGCGAACGTTAGT+TGG | - | tig0030443:32935-32954 | None:intergenic | 55.0% | |
| ! | GGAGGCCTTCTGGGAAAATC+AGG | - | tig0030443:33013-33032 | None:intergenic | 55.0% |
| CTAGCACTAGGAGGCCTTCT+GGG | - | tig0030443:33022-33041 | None:intergenic | 55.0% | |
| AATGAGTCCAGAACGCCGCT+AGG | - | tig0030443:34752-34771 | None:intergenic | 55.0% | |
| GAATGCGCGCAACATTGCCA+TGG | + | tig0030443:34916-34935 | Msa1443430:CDS | 55.0% | |
| GATCAGACCGAGTCGAAGCT+TGG | + | tig0030443:35609-35628 | Msa1443430:CDS | 55.0% | |
| TTCACCGCCAAGCTTCGACT+CGG | - | tig0030443:35619-35638 | None:intergenic | 55.0% | |
| CCTAGCACTAGGAGGCCTTC+TGG | - | tig0030443:33023-33042 | None:intergenic | 60.0% | |
| CCAGAAGGCCTCCTAGTGCT+AGG | + | tig0030443:33020-33039 | Msa1443430:CDS | 60.0% | |
| GGAACTTCCTAGCGGCGTTC+TGG | + | tig0030443:34742-34761 | Msa1443430:CDS | 60.0% | |
| CAGACCGAGTCGAAGCTTGG+CGG | + | tig0030443:35612-35631 | Msa1443430:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0030443 | gene | 32295 | 35877 | 32295 | ID=Msa1443430;Name=Msa1443430 |
| tig0030443 | mRNA | 32295 | 35877 | 32295 | ID=Msa1443430-mRNA-1;Parent=Msa1443430;Name=Msa1443430-mRNA-1;_AED=0.18;_eAED=0.18;_QI=391|0.75|0.8|1|1|1|5|240|437 |
| tig0030443 | exon | 32295 | 33041 | 32295 | ID=Msa1443430-mRNA-1:exon:13926;Parent=Msa1443430-mRNA-1 |
| tig0030443 | exon | 33519 | 33582 | 33519 | ID=Msa1443430-mRNA-1:exon:13927;Parent=Msa1443430-mRNA-1 |
| tig0030443 | exon | 33748 | 33867 | 33748 | ID=Msa1443430-mRNA-1:exon:13928;Parent=Msa1443430-mRNA-1 |
| tig0030443 | exon | 34731 | 34961 | 34731 | ID=Msa1443430-mRNA-1:exon:13929;Parent=Msa1443430-mRNA-1 |
| tig0030443 | exon | 35095 | 35877 | 35095 | ID=Msa1443430-mRNA-1:exon:13930;Parent=Msa1443430-mRNA-1 |
| tig0030443 | five_prime_UTR | 32295 | 32685 | 32295 | ID=Msa1443430-mRNA-1:five_prime_utr;Parent=Msa1443430-mRNA-1 |
| tig0030443 | CDS | 32686 | 33041 | 32686 | ID=Msa1443430-mRNA-1:cds;Parent=Msa1443430-mRNA-1 |
| tig0030443 | CDS | 33519 | 33582 | 33519 | ID=Msa1443430-mRNA-1:cds;Parent=Msa1443430-mRNA-1 |
| tig0030443 | CDS | 33748 | 33867 | 33748 | ID=Msa1443430-mRNA-1:cds;Parent=Msa1443430-mRNA-1 |
| tig0030443 | CDS | 34731 | 34961 | 34731 | ID=Msa1443430-mRNA-1:cds;Parent=Msa1443430-mRNA-1 |
| tig0030443 | CDS | 35095 | 35637 | 35095 | ID=Msa1443430-mRNA-1:cds;Parent=Msa1443430-mRNA-1 |
| tig0030443 | three_prime_UTR | 35638 | 35877 | 35638 | ID=Msa1443430-mRNA-1:three_prime_utr;Parent=Msa1443430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
