AlfalfaGEDB | Msa0231310

M. sativa cultivar zhongmu-4 / Msa0231310

KEGG: K21867
GO: GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0012505 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0031984 GO:0033993 GO:0034220 GO:0042175 GO:0042221 GO:0042391 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097305 GO:0098655 GO:0098660 GO:0098662 GO:0098827 GO:1901700
PFAM: PF00520.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0231310	XP_003593018.1	96.506	830	26	2	1	827	1	830	0.0	1666

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0231310	sp\|Q38898\|AKT2_ARATH	68.485	825	215	8	12	825	11	801	0.0	1130

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0231310	G7IPF9	96.506	830	26	2	1	827	1	830	0.0	1666

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0231310	0.813021	3.160505e-51	-8.615850e-47
Msa0008330	Msa0231310	0.801634	8.208237e-49	-8.615850e-47
Msa0016830	Msa0231310	0.800273	1.556941e-48	-8.615850e-47
Msa0023150	Msa0231310	0.836453	9.274515e-57	-8.615850e-47
Msa0028610	Msa0231310	0.805804	1.118289e-49	-8.615850e-47
Msa0030710	Msa0231310	0.817208	3.714798e-52	-8.615850e-47
Msa0032040	Msa0231310	0.835774	1.379334e-56	-8.615850e-47
Msa0033600	Msa0231310	0.812044	5.167228e-51	-8.615850e-47
Msa0033650	Msa0231310	0.818356	2.045959e-52	-8.615850e-47
Msa0034800	Msa0231310	0.833715	4.546794e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0231310	MtrunA17_Chr2g0277651	96.506	830	26	2	1	827	1	830	0.0	1666
Msa0231310	MtrunA17_Chr4g0063141	47.853	652	330	5	44	689	28	675	0.0	631
Msa0231310	MtrunA17_Chr8g0356081	48.880	491	240	3	44	525	22	510	2.13e-167	501
Msa0231310	MtrunA17_Chr1g0148981	38.163	773	368	14	16	689	8	769	3.56e-163	500
Msa0231310	MtrunA17_Chr3g0138671	45.347	505	267	5	36	532	17	520	1.64e-145	442
Msa0231310	MtrunA17_Chr2g0286031	53.867	375	162	2	145	519	17	380	8.18e-140	429
Msa0231310	MtrunA17_Chr3g0138131	50.253	396	181	6	45	433	46	432	1.32e-131	401
Msa0231310	MtrunA17_Chr5g0434371	31.074	782	493	15	61	824	81	834	2.11e-117	375
Msa0231310	MtrunA17_Chr3g0138141	29.664	327	211	4	446	767	11	323	1.56e-38	149
Msa0231310	MtrunA17_Chr4g0063071	31.034	232	151	3	286	508	5	236	1.90e-27	112

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0231310	AT4G22200.1	68.485	825	215	8	12	825	11	801	0.0	1130
Msa0231310	AT4G22200.2	73.905	571	134	6	12	570	11	578	0.0	859
Msa0231310	AT2G26650.1	41.327	859	435	12	22	824	12	857	0.0	660
Msa0231310	AT4G32500.1	39.863	873	457	12	10	822	14	878	0.0	624
Msa0231310	AT2G25600.1	45.401	674	349	7	27	689	35	700	0.0	602
Msa0231310	AT2G26650.2	40.867	761	385	10	120	824	1	752	0.0	577
Msa0231310	AT5G46240.1	47.628	548	275	4	40	587	29	564	5.96e-178	528
Msa0231310	AT4G18290.1	52.391	481	227	2	40	520	29	507	5.67e-174	518
Msa0231310	AT4G18290.2	52.391	481	227	2	40	520	40	518	1.37e-173	518
Msa0231310	AT4G32650.1	46.998	483	252	4	36	515	51	532	3.43e-137	422

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Find 138 sgRNAs with CRISPR-Local

Find 381 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAGCATTGCCCGTGC+TGG	0.477728	2_2:+3498465	None:intergenic
AAAATCTGAGCATTCCTAAG+AGG	0.515366	2_2:+3500188	None:intergenic
AAAGAGCAGATAGCTGATAG+AGG	0.548443	2_2:+3497840	None:intergenic
AAATAGGAAACTATATATTG+TGG	0.571721	2_2:-3502576	Msa0231310:CDS
AAATTGCTCTCCATTATTCT+TGG	0.270259	2_2:+3503638	None:intergenic
AACAAATTCACAGCCATGTT+AGG	0.383420	2_2:+3498496	None:intergenic
AACAGTTGTCATGGTAGTGA+TGG	0.561364	2_2:+3499745	None:intergenic
AACATGGTTCCTAATGGATG+TGG	0.629876	2_2:-3500281	Msa0231310:CDS
AAGAAGAACAGAAGCAGATT+TGG	0.263100	2_2:-3497496	Msa0231310:CDS
AAGCTCATTCTTCCACCACT+TGG	0.499728	2_2:-3503506	Msa0231310:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTGCTCTCCATTATTCT+TGG	+	chr2_2:3496817-3496836	None:intergenic	30.0%
CATCTTCATCTTTCAATCTA+AGG	-	chr2_2:3496914-3496933	Msa0231310:three_prime_UTR	30.0%
AAGGAGTTGGAAAATTAAGT+TGG	+	chr2_2:3497051-3497070	None:intergenic	30.0%
ATATTAAGAGACAAAGGAGT+TGG	+	chr2_2:3497064-3497083	None:intergenic	30.0%
ATTCCAAAAAAATTGCTGTC+AGG	-	chr2_2:3497989-3498008	Msa0231310:intron	30.0%
TAAGGTTTGAATGGAATATG+TGG	+	chr2_2:3498026-3498045	None:intergenic	30.0%
CCTATCCAAGAATAAGAATT+TGG	+	chr2_2:3498688-3498707	None:intergenic	30.0%
CCAAATTCTTATTCTTGGAT+AGG	-	chr2_2:3498685-3498704	Msa0231310:CDS	30.0%
AAAATCAACACCTGAATAGT+TGG	+	chr2_2:3498766-3498785	None:intergenic	30.0%
TGATTAACGATAGTAGTTGT+AGG	-	chr2_2:3498835-3498854	Msa0231310:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	3496502	3503972	3496502	ID=Msa0231310;Name=Msa0231310
chr2_2	mRNA	3496502	3503972	3496502	ID=Msa0231310-mRNA-1;Parent=Msa0231310;Name=Msa0231310-mRNA-1;_AED=0.08;_eAED=0.08;_QI=321\|1\|1\|1\|0.90\|0.83\|12\|179\|827
chr2_2	exon	3496502	3496555	3496502	ID=Msa0231310-mRNA-1:exon:1456;Parent=Msa0231310-mRNA-1
chr2_2	exon	3496839	3497091	3496839	ID=Msa0231310-mRNA-1:exon:1455;Parent=Msa0231310-mRNA-1
chr2_2	exon	3497357	3497926	3497357	ID=Msa0231310-mRNA-1:exon:1454;Parent=Msa0231310-mRNA-1
chr2_2	exon	3498008	3498083	3498008	ID=Msa0231310-mRNA-1:exon:1453;Parent=Msa0231310-mRNA-1
chr2_2	exon	3498399	3498584	3498399	ID=Msa0231310-mRNA-1:exon:1452;Parent=Msa0231310-mRNA-1
chr2_2	exon	3498675	3498992	3498675	ID=Msa0231310-mRNA-1:exon:1451;Parent=Msa0231310-mRNA-1
chr2_2	exon	3499249	3499488	3499249	ID=Msa0231310-mRNA-1:exon:1450;Parent=Msa0231310-mRNA-1
chr2_2	exon	3499601	3499918	3499601	ID=Msa0231310-mRNA-1:exon:1449;Parent=Msa0231310-mRNA-1
chr2_2	exon	3500013	3500070	3500013	ID=Msa0231310-mRNA-1:exon:1448;Parent=Msa0231310-mRNA-1
chr2_2	exon	3500154	3500312	3500154	ID=Msa0231310-mRNA-1:exon:1447;Parent=Msa0231310-mRNA-1
chr2_2	exon	3502464	3502682	3502464	ID=Msa0231310-mRNA-1:exon:1446;Parent=Msa0231310-mRNA-1
chr2_2	exon	3503440	3503972	3503440	ID=Msa0231310-mRNA-1:exon:1445;Parent=Msa0231310-mRNA-1
chr2_2	five_prime_UTR	3503652	3503972	3503652	ID=Msa0231310-mRNA-1:five_prime_utr;Parent=Msa0231310-mRNA-1
chr2_2	CDS	3503440	3503651	3503440	ID=Msa0231310-mRNA-1:cds;Parent=Msa0231310-mRNA-1
chr2_2	CDS	3502464	3502682	3502464	ID=Msa0231310-mRNA-1:cds;Parent=Msa0231310-mRNA-1
chr2_2	CDS	3500154	3500312	3500154	ID=Msa0231310-mRNA-1:cds;Parent=Msa0231310-mRNA-1
chr2_2	CDS	3500013	3500070	3500013	ID=Msa0231310-mRNA-1:cds;Parent=Msa0231310-mRNA-1
chr2_2	CDS	3499601	3499918	3499601	ID=Msa0231310-mRNA-1:cds;Parent=Msa0231310-mRNA-1
chr2_2	CDS	3499249	3499488	3499249	ID=Msa0231310-mRNA-1:cds;Parent=Msa0231310-mRNA-1
chr2_2	CDS	3498675	3498992	3498675	ID=Msa0231310-mRNA-1:cds;Parent=Msa0231310-mRNA-1
chr2_2	CDS	3498399	3498584	3498399	ID=Msa0231310-mRNA-1:cds;Parent=Msa0231310-mRNA-1
chr2_2	CDS	3498008	3498083	3498008	ID=Msa0231310-mRNA-1:cds;Parent=Msa0231310-mRNA-1
chr2_2	CDS	3497357	3497926	3497357	ID=Msa0231310-mRNA-1:cds;Parent=Msa0231310-mRNA-1
chr2_2	CDS	3496964	3497091	3496964	ID=Msa0231310-mRNA-1:cds;Parent=Msa0231310-mRNA-1
chr2_2	three_prime_UTR	3496839	3496963	3496839	ID=Msa0231310-mRNA-1:three_prime_utr;Parent=Msa0231310-mRNA-1
chr2_2	three_prime_UTR	3496502	3496555	3496502	ID=Msa0231310-mRNA-1:three_prime_utr;Parent=Msa0231310-mRNA-1

Gene Sequence

>Msa0231310

ATGGAGAGCAATTTCAGTTCATATAATCCTCATGACTTAGACTCTAGCATGAAGAGAAAGCACCATGATGTTAAAGAAGATTATTATACATCATCTTCATCTTTCAATCTAAGGAATGTTTCAAAGCTCATTCTTCCACCACTTGGTGTTTCAAAACAGAATTCAGTTTGCTCAAAAGGCTGGATCATATCACCAATGGATTCTAGATACAGGTGTTGGGAGAGTTTTATGGTTATTTTGGTAGCTTATTCTGCATGGGTTTATCCCTTTGAAGTTGCTTTCATGCACTCTTCTCCAAATAGGAAACTATATATTGTGGACAATATTGTTGATCTTTTCTTCGCTGTTGATATTGTTTTGACATTCTTCGTCGCATACGTAGATGGAACAACTCATCTACTTGTCAGAGATTCCAAAAAAATTGCTGTCAGGTACTTGTCAACATGGTTCCTAATGGATGTGGCATCAACTATACCATATGAAGCAATAGGCTACTTTTTAACTGGCAAGCACAAATTGAGTCTACCTTACTACCTCTTAGGAATGCTCAGATTTTGGAGAATTAGACGTGTCAAGCAATTCTTCACAAGGCTTGAGAAAGACATCAGGTTCAGCTATTTCTGGGTCAGATGTGCCAGACTTCTTTCTGTAACACTATTTTCAGTTCATTGTGCTGGGTGCCTCTATTACATGCTAGCTGATATGTACCCTCATGAAGGAAAGACATGGATTGGAGCTGTGATTCCAAACTTCAGAGAGACAAGCCCTCGGATTAGATATATTTCGGCTATTTATTGGTCCATCACTACCATGACAACTGTTGGTTATGGTGATCTTCATGCTGTCAACACCATGGAAATGATTTTCATTATTTTCTACATGCTCTTCAACCTTGGCCTAACTGCTTACTTGATTGGTAACATGACAAATCTTGTTGTTGAAGGAACTCGTCGCACCATGGAATTTAGAAACAGCATTGAAGCAGCATCAAATTTTGTGTGCCGAAATCGGTTGCCTCCAAGGTTAAAAGAGCAGATCCTGGCTTACATGTGTTTGAGATTTAAGGCAGAGAGCTTGAATCAGCATCAGCTAATTGAACAGCTACCAAAGTCAATTTGCAAAGGCATTTGCCAGCATTTGTTTTTTCCAACTGTAGAGAAAGTCTATCTCTTCAAAGGCGTCTCAAAAGAAATCCTTTTGTCCCTAGTTGCAAAAATGAAGGCAGAGTACATACCACCTAAAGAGGATGTAATCATGCAAAATGAATCACCAGATGATGTTTATATTATAGTGTCAGGAGAAGTGGAGATTATTGATAGTGTTATAGAGAAAGAGAGAATTTTAGGCACTCTAACAACTGGAGACATGTTTGGAGAAGTTGGTGCACTTTGTTGTAGGCCTCAGAGTTTTACATACAGAACCAAGACTCTAACACAGCTTCTGAAGCTGAAAACCAGTGATCTTATAGAAGCAATGCAGATTAAAAAAGAAGACAATATACTAATACTCAAAAATTTCCTTCAGCATTTCAAGCAGCTTAAGGATTTGAGTATCAAAGATTTAATGGTGGAAAATGTGGAGGAAGACGATCCTAACATGGCTGTGAATTTGTTAACTGTGGCCAGCACGGGCAATGCTGCTTTTCTCGAGGAGCTTCTAAGAGCTGGTTTGGATCCTGACATTGGAGACTCAAAAGAAAAAACTCCATTGCACATAGCTGCATCAAATGGGCATGAAGAGTGTGTTAAAGTCTTGCTTAAGCATACATGCAACATACATATAAAAGATATGAATGGTGACAATGCACTATGGTATGCTATAGCATCAAAACATCACTCAATATTCAGGATCCTCTATCAGCTATCTGCTCTTTCTGATCCATACACAGCAGGCAATCTCCTATGTACAGCAGCAAAAAGAAATGATATAACAGTGATGCATGAACTTTTAAAGCAAGGATTAAACATTGACTCAAAAGATCGACATGGCATGACAGCTATCCAAATTGCTATGGCAGAAAATCATGTGGACATGGTTCAGTTGCTTGTCATGAACGGCGCAGATGTTACTGATGTACATGTTCATGAATTTTCTGCATCCATCTTAAATGAAATTCTGCAGAAACGCGAAATCGGACATCTAATTAATGTGAGTGAGGCCATGCCTAGTGAGTATGTATTAAAGGTGCAAAGTCAAGAAGAACAGAAGCAGATTTGGGGAAGATATAATGGACTAGATTGTCCAAGAGTAAGCATATATAGAGGTCACCCAGTAGTGAGAAGAGAAAGAGGTTTCATTGAAGCTGGAAAGTTAATAAGGTTGCCTGATTCATTAGAGAAGCTCAAAATTATTGCAGGTGAAAAATTTGGGTTTGATGCAAAAGATACAATGGTGACAAATGAAGAAGGAGCAGAAATAGATTGTATTGATGTGATCAGAGATAATGACAAACTTTTTTTTGTTGAAGAGGCTATTGATGCATAA

Protein sequence

>Msa0231310

MESNFSSYNPHDLDSSMKRKHHDVKEDYYTSSSSFNLRNVSKLILPPLGVSKQNSVCSKGWIISPMDSRYRCWESFMVILVAYSAWVYPFEVAFMHSSPNRKLYIVDNIVDLFFAVDIVLTFFVAYVDGTTHLLVRDSKKIAVRYLSTWFLMDVASTIPYEAIGYFLTGKHKLSLPYYLLGMLRFWRIRRVKQFFTRLEKDIRFSYFWVRCARLLSVTLFSVHCAGCLYYMLADMYPHEGKTWIGAVIPNFRETSPRIRYISAIYWSITTMTTVGYGDLHAVNTMEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVCRNRLPPRLKEQILAYMCLRFKAESLNQHQLIEQLPKSICKGICQHLFFPTVEKVYLFKGVSKEILLSLVAKMKAEYIPPKEDVIMQNESPDDVYIIVSGEVEIIDSVIEKERILGTLTTGDMFGEVGALCCRPQSFTYRTKTLTQLLKLKTSDLIEAMQIKKEDNILILKNFLQHFKQLKDLSIKDLMVENVEEDDPNMAVNLLTVASTGNAAFLEELLRAGLDPDIGDSKEKTPLHIAASNGHEECVKVLLKHTCNIHIKDMNGDNALWYAIASKHHSIFRILYQLSALSDPYTAGNLLCTAAKRNDITVMHELLKQGLNIDSKDRHGMTAIQIAMAENHVDMVQLLVMNGADVTDVHVHEFSASILNEILQKREIGHLINVSEAMPSEYVLKVQSQEEQKQIWGRYNGLDCPRVSIYRGHPVVRRERGFIEAGKLIRLPDSLEKLKIIAGEKFGFDAKDTMVTNEEGAEIDCIDVIRDNDKLFFVEEAIDA*