AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1041620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1041620 MtrunA17_Chr7g0268531 97.945 438 6 1 1 438 1 435 0.0 880
Msa1041620 MtrunA17_Chr1g0196181 64.667 450 98 10 40 438 44 483 0.0 538
Msa1041620 MtrunA17_Chr8g0346171 67.766 273 80 3 35 307 87 351 1.20e-131 388
Msa1041620 MtrunA17_Chr7g0266501 64.158 279 95 1 30 308 69 342 9.28e-126 373
Msa1041620 MtrunA17_Chr4g0026251 64.286 266 86 1 28 293 66 322 4.62e-124 364
Msa1041620 MtrunA17_Chr2g0321541 63.139 274 96 1 35 308 50 318 1.91e-120 358
Msa1041620 MtrunA17_Chr7g0250591 73.786 206 47 2 102 307 14 212 2.66e-98 293
Msa1041620 MtrunA17_Chr5g0426461 61.783 157 56 1 102 258 16 168 2.93e-63 201
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1041620 AT4G03100.1 66.479 355 92 4 30 358 39 392 3.92e-161 461
Msa1041620 AT2G46710.1 67.586 290 86 5 35 320 77 362 4.88e-135 396
Msa1041620 AT5G22400.1 64.437 284 95 2 29 312 87 364 2.24e-129 382
Msa1041620 AT3G11490.1 60.606 297 107 3 35 327 69 359 2.62e-122 363
Msa1041620 AT1G08340.1 63.673 245 89 0 63 307 1 245 2.78e-113 336

Find 100 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAAATAGTTTAGTATATT+TGG 0.064059 7_1:+79197807 None:intergenic
TTGAATCAGCTTTGCTTAAT+TGG 0.091752 7_1:-79199152 Msa1041620:CDS
GTGCTTGTTAATCTATTCTT+AGG 0.184145 7_1:-79197749 Msa1041620:three_prime_UTR
TCCAAATATACTAAACTATT+TGG 0.186491 7_1:-79197808 Msa1041620:three_prime_UTR
TAATTGGGCTGTTGATCTTA+TGG 0.232844 7_1:-79199136 Msa1041620:CDS
GCTTAATTAAAGCATGGTTT+AGG 0.267143 7_1:-79199275 Msa1041620:CDS
AAGCATACCTGAGTCATATT+TGG 0.279990 7_1:+79199048 None:intergenic
CTTAATTAAAGCATGGTTTA+GGG 0.299820 7_1:-79199274 Msa1041620:CDS
TGTCGAGCCGTTTCTATAAC+TGG 0.304547 7_1:+79198123 None:intergenic
TTTCGTATAAATCCAGAAAA+TGG 0.307758 7_1:-79199372 Msa1041620:CDS
GTGTCTTTACTTTCTATTGA+TGG 0.311575 7_1:+79198067 None:intergenic
TGAAGAGGATTATAACAAAA+TGG 0.341839 7_1:-79199100 Msa1041620:CDS
AGAATGCTTCTTAGAACAAT+TGG 0.343443 7_1:-79198245 Msa1041620:CDS
CTTCCTTCAGGAGTGTTAGA+TGG 0.358229 7_1:-79199249 Msa1041620:CDS
AATTGCAGTGTTAGTGTGTT+TGG 0.363248 7_1:-79199615 Msa1041620:intron
CTTGTGTATACTTGATTAGT+AGG 0.370251 7_1:-79197900 Msa1041620:three_prime_UTR
CTAACATGCTTAACATTTGT+AGG 0.376675 7_1:+79200475 None:intergenic
TGAATCAGCTTTGCTTAATT+GGG 0.382771 7_1:-79199151 Msa1041620:CDS
AATTTGAGCTTCTTGTTGTC+AGG 0.386910 7_1:-79197973 Msa1041620:three_prime_UTR
TGGTTTAGGGAACTTCCTTC+AGG 0.390002 7_1:-79199261 Msa1041620:CDS
ATCTACCATCTCCACATCAT+TGG 0.394673 7_1:+79198045 None:intergenic
TGACATTGATGTACATTGTT+TGG 0.396606 7_1:-79199301 Msa1041620:CDS
GAAGAGGAAGCAGAGACGGC+GGG 0.403827 7_1:-79200618 Msa1041620:CDS
CAGACAGGAATCCTCAGTTT+TGG 0.410752 7_1:+79198150 None:intergenic
TTAAGCAAAGCTGATTCAAC+TGG 0.417940 7_1:+79199156 None:intergenic
TTTGGACACATAACATAATC+AGG 0.421537 7_1:+79197825 None:intergenic
CAATGTACATCAATGTCATT+TGG 0.423147 7_1:+79199306 None:intergenic
GTGAGTGGTGGATGCGGTGG+TGG 0.428914 7_1:-79200658 Msa1041620:CDS
TGCTTGTTAATCTATTCTTA+GGG 0.431102 7_1:-79197748 Msa1041620:three_prime_UTR
TCTTCTTGCAAATGCTCTGC+AGG 0.433059 7_1:+79198187 None:intergenic
ATTAGCTACGAATTTCATCT+AGG 0.433903 7_1:-79197781 Msa1041620:three_prime_UTR
CAATGTTCTTATGATTCAAA+AGG 0.438953 7_1:-79199573 Msa1041620:CDS
CTGCATTAGTAACAGAATAG+TGG 0.443345 7_1:+79199539 None:intergenic
CTGCTGTTGCTGTTTCTTCG+CGG 0.447979 7_1:+79198425 None:intergenic
AGAAGAGGAAGCAGAGACGG+CGG 0.455159 7_1:-79200619 Msa1041620:CDS
CACTATTCTGTTACTAATGC+AGG 0.459853 7_1:-79199538 Msa1041620:CDS
GTTCATCATCCAATGGAGAT+TGG 0.485515 7_1:-79200502 Msa1041620:CDS
TTGAGGGAGCAATTGAATAG+TGG 0.488849 7_1:-79199336 Msa1041620:CDS
AGGTACCTAGCACTAGGAAC+AGG 0.489014 7_1:+79200382 None:intergenic
ATTGATGTACATTGTTTGGC+TGG 0.490876 7_1:-79199297 Msa1041620:CDS
ATGCAGCTTCTTCAATGTTG+TGG 0.493347 7_1:+79198287 None:intergenic
TCTATAACTGGAACTCAGAC+AGG 0.498474 7_1:+79198135 None:intergenic
TGCATTAGTAACAGAATAGT+GGG 0.498479 7_1:+79199540 None:intergenic
GGAAGAAGAGGAAGCAGAGA+CGG 0.498925 7_1:-79200622 Msa1041620:CDS
GCAGGAGAGGTTATACTCAC+AGG 0.501375 7_1:-79199520 Msa1041620:CDS
GCATGCATTAGAGCAGTTAG+TGG 0.503772 7_1:+79198499 None:intergenic
TTGCATTCAAGAACTTCCTC+AGG 0.507388 7_1:+79199219 None:intergenic
CTGCTCCTGTTCCTAGTGCT+AGG 0.511600 7_1:-79200387 Msa1041620:intron
ATTATAACAAAATGGATGCT+AGG 0.516074 7_1:-79199092 Msa1041620:CDS
AGTAGTGTGAAGGGAAGAAG+AGG 0.521967 7_1:-79200634 Msa1041620:CDS
TGGTGAAGAGGAACATTTGA+GGG 0.526583 7_1:-79199352 Msa1041620:CDS
GCAGCTAACATTAACGCTGC+TGG 0.527383 7_1:+79200583 None:intergenic
GTAGGCCATCCAATCTCCAT+TGG 0.529727 7_1:+79200493 None:intergenic
ATACTCACAGGGAGGACTAA+AGG 0.532224 7_1:-79199508 Msa1041620:intron
CATCCACCACTCACCATCAC+TGG 0.532322 7_1:+79200667 None:intergenic
ATTACTCTTGTGAACTTCAA+CGG 0.536185 7_1:+79200862 None:intergenic
CTGAGTTCCAGTTATAGAAA+CGG 0.539389 7_1:-79198130 Msa1041620:CDS
AGCTGCTTTGAAGAAATCAA+TGG 0.544551 7_1:-79200566 Msa1041620:CDS
ATCATCCAATGGAGATTGGA+TGG 0.548029 7_1:-79200498 Msa1041620:CDS
ACGGCGGAGATTACATCGTC+AGG 0.549741 7_1:+79200523 None:intergenic
ATGATCATCATAATCTAACT+TGG 0.553962 7_1:+79198321 None:intergenic
TTCTGTTACTAATGCAGGAG+AGG 0.557243 7_1:-79199533 Msa1041620:CDS
GGATGCTAGGAATATTGCTA+TGG 0.560041 7_1:-79199079 Msa1041620:CDS
TGTGATGGGTTATGTTATGA+AGG 0.562409 7_1:+79200829 None:intergenic
GAAGATGAGAGGACCAGTGA+TGG 0.565192 7_1:-79200680 Msa1041620:exon
CGGTGGTGGTAGTAGTGTGA+AGG 0.570136 7_1:-79200644 Msa1041620:CDS
GGCTGATGTTGTAGTTGAAG+AGG 0.571255 7_1:-79199115 Msa1041620:CDS
TGGCTGGCTTAATTAAAGCA+TGG 0.577136 7_1:-79199281 Msa1041620:CDS
AAATCCAGAAAATGGTGAAG+AGG 0.577700 7_1:-79199364 Msa1041620:CDS
ACATGAACTTCAAGCTCAAG+AGG 0.579188 7_1:+79200412 None:intergenic
AGACACCAATGATGTGGAGA+TGG 0.581128 7_1:-79198050 Msa1041620:CDS
TAAAACGATCAAACGTGACA+TGG 0.583384 7_1:+79200452 None:intergenic
ATGGTGAAGAGGAACATTTG+AGG 0.585254 7_1:-79199353 Msa1041620:CDS
ATGGTGAGTGGTGGATGCGG+TGG 0.589261 7_1:-79200661 Msa1041620:CDS
CTCCGCCGTTCATCATCCAA+TGG 0.590362 7_1:-79200509 Msa1041620:CDS
ATAAGAAGATAGTGTTTGTG+TGG 0.594668 7_1:-79200707 Msa1041620:five_prime_UTR
CTAGCACTAGGAACAGGAGC+AGG 0.596477 7_1:+79200388 None:intergenic
AAGTAAAGACACCAATGATG+TGG 0.596557 7_1:-79198056 Msa1041620:CDS
AGTCCATCTAACACTCCTGA+AGG 0.599306 7_1:+79199246 None:intergenic
CAGGAGAGGTTATACTCACA+GGG 0.599702 7_1:-79199519 Msa1041620:CDS
ATCTGATGAATGAGATGACA+TGG 0.603264 7_1:+79198393 None:intergenic
AAAGTAAGGTACCTAGCACT+AGG 0.611243 7_1:+79200376 None:intergenic
TCTTAATTAGATGCAAACAA+AGG 0.614596 7_1:+79197995 None:intergenic
AACGGCTCGACAACAACTGA+GGG 0.615985 7_1:-79198112 Msa1041620:CDS
AATCTCCATTGGATGATGAA+CGG 0.625225 7_1:+79200504 None:intergenic
ATCAATGGTTGCTTGTAGTG+TGG 0.627262 7_1:-79200551 Msa1041620:CDS
GTGATGGTGAGTGGTGGATG+CGG 0.627794 7_1:-79200664 Msa1041620:CDS
AAGAGGAAGCAGAGACGGCG+GGG 0.629048 7_1:-79200617 Msa1041620:CDS
AAACGGCTCGACAACAACTG+AGG 0.661142 7_1:-79198113 Msa1041620:CDS
CAACAAGAAATGTATACTAG+CGG 0.664805 7_1:-79198358 Msa1041620:CDS
GGACCAGTGATGGTGAGTGG+TGG 0.667309 7_1:-79200670 Msa1041620:CDS
GGTGGTGGTAGTAGTGTGAA+GGG 0.668108 7_1:-79200643 Msa1041620:CDS
CTCCATTGGATGATGAACGG+CGG 0.679903 7_1:+79200507 None:intergenic
GTTAGATGGACTTTCACCTG+AGG 0.686418 7_1:-79199235 Msa1041620:CDS
AGAGAGTCCTACCAAAACTG+AGG 0.688445 7_1:-79198161 Msa1041620:CDS
ACTAACTGCTCTAATGCATG+CGG 0.693394 7_1:-79198497 Msa1041620:CDS
AGAGGACCAGTGATGGTGAG+TGG 0.694819 7_1:-79200673 Msa1041620:CDS
TGTGTGGAGAAGAAGATGAG+AGG 0.729777 7_1:-79200691 Msa1041620:exon
GCATTAGTAACAGAATAGTG+GGG 0.751385 7_1:+79199541 None:intergenic
GAGAGGTTATACTCACAGGG+AGG 0.769530 7_1:-79199516 Msa1041620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTAAAAAATTGAATTTTTTT+AGG - chr7_1:79198373-79198392 Msa1041620:CDS 10.0%
!!! AAAATTTTAATTATAGCAAT+TGG + chr7_1:79198775-79198794 None:intergenic 10.0%
!! AATTAAAAAATGAAAAAAGA+GGG + chr7_1:79199068-79199087 None:intergenic 10.0%
!! TAATTAAAAAATGAAAAAAG+AGG + chr7_1:79199069-79199088 None:intergenic 10.0%
!!! TTTTTAATTAATGAATTTTC+AGG - chr7_1:79199079-79199098 Msa1041620:CDS 10.0%
!!! AAATTTTGATTTTGAATTTG+AGG + chr7_1:79197742-79197761 None:intergenic 15.0%
!! AAATGAAAAAGAAAAAAGTA+AGG + chr7_1:79198126-79198145 None:intergenic 15.0%
!! AGTAAAAGTTAGTAATTAAA+TGG - chr7_1:79198534-79198553 Msa1041620:intron 15.0%
!!! TTTTGTAGTAACATTTCAAT+GGG - chr7_1:79198336-79198355 Msa1041620:CDS 20.0%
!!! AACTTTTCATCATCAAATAA+AGG + chr7_1:79198590-79198609 None:intergenic 20.0%
!!! AGTTTCTTTGATTTAATGAT+TGG - chr7_1:79198722-79198741 Msa1041620:intron 20.0%
!!! GTTTCTTTGATTTAATGATT+GGG - chr7_1:79198723-79198742 Msa1041620:intron 20.0%
!!! CATGATTTAATAATAGCTTT+TGG + chr7_1:79198798-79198817 None:intergenic 20.0%
!!! AGGGAAAAATATTTTATAGT+TGG + chr7_1:79199049-79199068 None:intergenic 20.0%
!! CAAAAACATTAAAACTTTAG+GGG + chr7_1:79199650-79199669 None:intergenic 20.0%
!! GCAAAAACATTAAAACTTTA+GGG + chr7_1:79199651-79199670 None:intergenic 20.0%
!! TGCAAAAACATTAAAACTTT+AGG + chr7_1:79199652-79199671 None:intergenic 20.0%
!! TCCAAATATACTAAACTATT+TGG - chr7_1:79200677-79200696 Msa1041620:CDS 20.0%
!! TCCAAATAGTTTAGTATATT+TGG + chr7_1:79200681-79200700 None:intergenic 20.0%
!!! GAGTTTTTGATGTTTTTGTT+GGG + chr7_1:79197717-79197736 None:intergenic 25.0%
!!! TGAGTTTTTGATGTTTTTGT+TGG + chr7_1:79197718-79197737 None:intergenic 25.0%
!! AAACTCGAGATTTTACTTAA+GGG - chr7_1:79198263-79198282 Msa1041620:CDS 25.0%
! CTAAATTAGAAACCAACATT+TGG + chr7_1:79198316-79198335 None:intergenic 25.0%
!! GTTTTGTAGTAACATTTCAA+TGG - chr7_1:79198335-79198354 Msa1041620:CDS 25.0%
! TTTGTAGTAACATTTCAATG+GGG - chr7_1:79198337-79198356 Msa1041620:CDS 25.0%
!! TTAGGGTAAGATTTTATTGT+TGG - chr7_1:79198391-79198410 Msa1041620:CDS 25.0%
! TTTCATATTATCCTTCAATG+AGG - chr7_1:79198483-79198502 Msa1041620:CDS 25.0%
! ATGATGAAAAGTTTCCATAA+CGG - chr7_1:79198597-79198616 Msa1041620:intron 25.0%
! AAGAAACTTATTGTAAGTAG+TGG + chr7_1:79198710-79198729 None:intergenic 25.0%
! CAATGTTCTTATGATTCAAA+AGG - chr7_1:79198912-79198931 Msa1041620:intron 25.0%
! TTTCGTATAAATCCAGAAAA+TGG - chr7_1:79199113-79199132 Msa1041620:CDS 25.0%
! CTTAATTAAAGCATGGTTTA+GGG - chr7_1:79199211-79199230 Msa1041620:CDS 25.0%
! TGAAGAGGATTATAACAAAA+TGG - chr7_1:79199385-79199404 Msa1041620:CDS 25.0%
! ATTATAACAAAATGGATGCT+AGG - chr7_1:79199393-79199412 Msa1041620:intron 25.0%
! ATCATTTACACACAAAAATG+TGG + chr7_1:79199812-79199831 None:intergenic 25.0%
!! TTTTCAGTAAATTCATCACT+TGG + chr7_1:79200015-79200034 None:intergenic 25.0%
! ATGATCATCATAATCTAACT+TGG + chr7_1:79200167-79200186 None:intergenic 25.0%
! TCTTAATTAGATGCAAACAA+AGG + chr7_1:79200493-79200512 None:intergenic 25.0%
!! ATTTTGTGTTTTACAAGCAA+GGG - chr7_1:79200559-79200578 Msa1041620:CDS 25.0%
!!! TAGTAGGTTTTTCTTGTTTT+TGG - chr7_1:79200601-79200620 Msa1041620:CDS 25.0%
!! TGCTTGTTAATCTATTCTTA+GGG - chr7_1:79200737-79200756 Msa1041620:five_prime_UTR 25.0%
! AGATTGATTAAGCCTAAAAA+TGG - chr7_1:79200767-79200786 Msa1041620:five_prime_UTR 25.0%
!! CGTTCATGATCAAAATTTTA+TGG - chr7_1:79200806-79200825 Msa1041620:five_prime_UTR 25.0%
ATTACTCTTGTGAACTTCAA+CGG + chr7_1:79197626-79197645 None:intergenic 30.0%
!!! TGTTTGTTTTTGTGTGTGAT+GGG + chr7_1:79197673-79197692 None:intergenic 30.0%
!!! ATGTTTGTTTTTGTGTGTGA+TGG + chr7_1:79197674-79197693 None:intergenic 30.0%
ATAAGAAGATAGTGTTTGTG+TGG - chr7_1:79197778-79197797 Msa1041620:three_prime_UTR 30.0%
CTAACATGCTTAACATTTGT+AGG + chr7_1:79198013-79198032 None:intergenic 30.0%
!! TCACGTTTGATCGTTTTAAT+GGG - chr7_1:79198038-79198057 Msa1041620:CDS 30.0%
!!! TGATCGTTTTAATGGGTTTT+TGG - chr7_1:79198045-79198064 Msa1041620:CDS 30.0%
!!! GATCGTTTTAATGGGTTTTT+GGG - chr7_1:79198046-79198065 Msa1041620:CDS 30.0%
! CAAACTCGAGATTTTACTTA+AGG - chr7_1:79198262-79198281 Msa1041620:CDS 30.0%
TTACTTAAGGGATCTAAATC+CGG - chr7_1:79198275-79198294 Msa1041620:CDS 30.0%
AACTGAAAAAACCTCATTGA+AGG + chr7_1:79198497-79198516 None:intergenic 30.0%
!!! TTCAATGAGGTTTTTTCAGT+TGG - chr7_1:79198496-79198515 Msa1041620:CDS 30.0%
AAAGGCAAATCTCAATAACT+TGG + chr7_1:79198572-79198591 None:intergenic 30.0%
TTGTAAGTAGTGGCATAAAA+CGG + chr7_1:79198700-79198719 None:intergenic 30.0%
TCACAAATCACATCAGAATA+TGG + chr7_1:79198842-79198861 None:intergenic 30.0%
TGCATTAGTAACAGAATAGT+GGG + chr7_1:79198948-79198967 None:intergenic 30.0%
! TATAGTTGGTTCACATAATC+TGG + chr7_1:79199035-79199054 None:intergenic 30.0%
!! TTAATGAATTTTCAGGCTGA+AGG - chr7_1:79199086-79199105 Msa1041620:CDS 30.0%
CAATGTACATCAATGTCATT+TGG + chr7_1:79199182-79199201 None:intergenic 30.0%
TGACATTGATGTACATTGTT+TGG - chr7_1:79199184-79199203 Msa1041620:CDS 30.0%
GCTTAATTAAAGCATGGTTT+AGG - chr7_1:79199210-79199229 Msa1041620:CDS 30.0%
TTGAATCAGCTTTGCTTAAT+TGG - chr7_1:79199333-79199352 Msa1041620:CDS 30.0%
TGAATCAGCTTTGCTTAATT+GGG - chr7_1:79199334-79199353 Msa1041620:CDS 30.0%
AGAGCCTAATAAAATCATGT+GGG - chr7_1:79199513-79199532 Msa1041620:CDS 30.0%
GCATTAAGCATAATTTCGTT+TGG + chr7_1:79199862-79199881 None:intergenic 30.0%
CATGCATGTGTAATATATAC+AGG + chr7_1:79199891-79199910 None:intergenic 30.0%
CAACAAGAAATGTATACTAG+CGG - chr7_1:79200127-79200146 Msa1041620:intron 30.0%
AGAATGCTTCTTAGAACAAT+TGG - chr7_1:79200240-79200259 Msa1041620:intron 30.0%
GTGTCTTTACTTTCTATTGA+TGG + chr7_1:79200421-79200440 None:intergenic 30.0%
! GATTTTGTGTTTTACAAGCA+AGG - chr7_1:79200558-79200577 Msa1041620:CDS 30.0%
! TTTTGTGTTTTACAAGCAAG+GGG - chr7_1:79200560-79200579 Msa1041620:CDS 30.0%
CTTGTGTATACTTGATTAGT+AGG - chr7_1:79200585-79200604 Msa1041620:CDS 30.0%
TTTGGACACATAACATAATC+AGG + chr7_1:79200663-79200682 None:intergenic 30.0%
ATTAGCTACGAATTTCATCT+AGG - chr7_1:79200704-79200723 Msa1041620:five_prime_UTR 30.0%
! GTGCTTGTTAATCTATTCTT+AGG - chr7_1:79200736-79200755 Msa1041620:five_prime_UTR 30.0%
!! ACATAACTAGCACCATTTTT+AGG + chr7_1:79200782-79200801 None:intergenic 30.0%
!! TGTGATGGGTTATGTTATGA+AGG + chr7_1:79197659-79197678 None:intergenic 35.0%
!! AGCTGCTTTGAAGAAATCAA+TGG - chr7_1:79197919-79197938 Msa1041620:three_prime_UTR 35.0%
AATCTCCATTGGATGATGAA+CGG + chr7_1:79197984-79198003 None:intergenic 35.0%
TAAAACGATCAAACGTGACA+TGG + chr7_1:79198036-79198055 None:intergenic 35.0%
! GTCACGTTTGATCGTTTTAA+TGG - chr7_1:79198037-79198056 Msa1041620:CDS 35.0%
! CAACATTTGGTTAGTCCAAA+TGG + chr7_1:79198303-79198322 None:intergenic 35.0%
CATTTGGACTAACCAAATGT+TGG - chr7_1:79198301-79198320 Msa1041620:CDS 35.0%
! GGGTAAGATTTTATTGTTGG+TGG - chr7_1:79198394-79198413 Msa1041620:CDS 35.0%
AGTTTCCATAACGGTAATGT+AGG - chr7_1:79198606-79198625 Msa1041620:intron 35.0%
CAAATCCTACATTACCGTTA+TGG + chr7_1:79198614-79198633 None:intergenic 35.0%
AATTGCAGTGTTAGTGTGTT+TGG - chr7_1:79198870-79198889 Msa1041620:intron 35.0%
GCATTAGTAACAGAATAGTG+GGG + chr7_1:79198947-79198966 None:intergenic 35.0%
CTGCATTAGTAACAGAATAG+TGG + chr7_1:79198949-79198968 None:intergenic 35.0%
CACTATTCTGTTACTAATGC+AGG - chr7_1:79198947-79198966 Msa1041620:intron 35.0%
GTTCACATAATCTGGAAAAC+TGG + chr7_1:79199027-79199046 None:intergenic 35.0%
AAATCCAGAAAATGGTGAAG+AGG - chr7_1:79199121-79199140 Msa1041620:CDS 35.0%
ATTGATGTACATTGTTTGGC+TGG - chr7_1:79199188-79199207 Msa1041620:CDS 35.0%
! TTAAGCAAAGCTGATTCAAC+TGG + chr7_1:79199332-79199351 None:intergenic 35.0%
TAATTGGGCTGTTGATCTTA+TGG - chr7_1:79199349-79199368 Msa1041620:CDS 35.0%
! TTTTGCTCCAAATATGACTC+AGG - chr7_1:79199430-79199449 Msa1041620:intron 35.0%
AAGCATACCTGAGTCATATT+TGG + chr7_1:79199440-79199459 None:intergenic 35.0%
CAGAGCCTAATAAAATCATG+TGG - chr7_1:79199512-79199531 Msa1041620:CDS 35.0%
! GGATCCCACATGATTTTATT+AGG + chr7_1:79199520-79199539 None:intergenic 35.0%
GCATAAAACATTCAAATCCG+AGG + chr7_1:79199553-79199572 None:intergenic 35.0%
TTACACACAAAAATGTGGAG+TGG + chr7_1:79199807-79199826 None:intergenic 35.0%
ATCTGATGAATGAGATGACA+TGG + chr7_1:79200095-79200114 None:intergenic 35.0%
CTGAGTTCCAGTTATAGAAA+CGG - chr7_1:79200355-79200374 Msa1041620:intron 35.0%
AAGTAAAGACACCAATGATG+TGG - chr7_1:79200429-79200448 Msa1041620:CDS 35.0%
! AATTTGAGCTTCTTGTTGTC+AGG - chr7_1:79200512-79200531 Msa1041620:CDS 35.0%
ATCAATGGTTGCTTGTAGTG+TGG - chr7_1:79197934-79197953 Msa1041620:three_prime_UTR 40.0%
GTTCATCATCCAATGGAGAT+TGG - chr7_1:79197983-79198002 Msa1041620:exon 40.0%
ATCATCCAATGGAGATTGGA+TGG - chr7_1:79197987-79198006 Msa1041620:exon 40.0%
ACATGAACTTCAAGCTCAAG+AGG + chr7_1:79198076-79198095 None:intergenic 40.0%
! AAAGTAAGGTACCTAGCACT+AGG + chr7_1:79198112-79198131 None:intergenic 40.0%
!! TGGAGATTATCAGTTGGTGA+TGG + chr7_1:79198198-79198217 None:intergenic 40.0%
GATCTAAATCCGGTTCCATT+TGG - chr7_1:79198285-79198304 Msa1041620:CDS 40.0%
! TTGGTTAGTCCAAATGGAAC+CGG + chr7_1:79198297-79198316 None:intergenic 40.0%
TTCTGTTACTAATGCAGGAG+AGG - chr7_1:79198952-79198971 Msa1041620:intron 40.0%
! TGTTCCTCTTCACCATTTTC+TGG + chr7_1:79199128-79199147 None:intergenic 40.0%
ATGGTGAAGAGGAACATTTG+AGG - chr7_1:79199132-79199151 Msa1041620:CDS 40.0%
TGGTGAAGAGGAACATTTGA+GGG - chr7_1:79199133-79199152 Msa1041620:CDS 40.0%
TTGAGGGAGCAATTGAATAG+TGG - chr7_1:79199149-79199168 Msa1041620:CDS 40.0%
!! TGGCTGGCTTAATTAAAGCA+TGG - chr7_1:79199204-79199223 Msa1041620:CDS 40.0%
TTGCATTCAAGAACTTCCTC+AGG + chr7_1:79199269-79199288 None:intergenic 40.0%
GGATGCTAGGAATATTGCTA+TGG - chr7_1:79199406-79199425 Msa1041620:intron 40.0%
ATCTTGTGACTTCACGTAGT+CGG + chr7_1:79199593-79199612 None:intergenic 40.0%
TAGATGAGATGACTCAAGCA+TGG + chr7_1:79199678-79199697 None:intergenic 40.0%
ACTAACTGCTCTAATGCATG+CGG - chr7_1:79199988-79200007 Msa1041620:intron 40.0%
ATGCAGCTTCTTCAATGTTG+TGG + chr7_1:79200201-79200220 None:intergenic 40.0%
TCTATAACTGGAACTCAGAC+AGG + chr7_1:79200353-79200372 None:intergenic 40.0%
ATCTACCATCTCCACATCAT+TGG + chr7_1:79200443-79200462 None:intergenic 40.0%
TGTGTGGAGAAGAAGATGAG+AGG - chr7_1:79197794-79197813 Msa1041620:three_prime_UTR 45.0%
AGTAGTGTGAAGGGAAGAAG+AGG - chr7_1:79197851-79197870 Msa1041620:three_prime_UTR 45.0%
CACCAACTGATAATCTCCAC+CGG - chr7_1:79198199-79198218 Msa1041620:CDS 45.0%
ACCAACTGATAATCTCCACC+GGG - chr7_1:79198200-79198219 Msa1041620:CDS 45.0%
AATCTCGAGTTTGAGCAGTG+CGG + chr7_1:79198255-79198274 None:intergenic 45.0%
CAGGAGAGGTTATACTCACA+GGG - chr7_1:79198966-79198985 Msa1041620:intron 45.0%
ATACTCACAGGGAGGACTAA+AGG - chr7_1:79198977-79198996 Msa1041620:intron 45.0%
TGGTTTAGGGAACTTCCTTC+AGG - chr7_1:79199224-79199243 Msa1041620:CDS 45.0%
!! CTTCCTTCAGGAGTGTTAGA+TGG - chr7_1:79199236-79199255 Msa1041620:CDS 45.0%
AGTCCATCTAACACTCCTGA+AGG + chr7_1:79199242-79199261 None:intergenic 45.0%
! GTTAGATGGACTTTCACCTG+AGG - chr7_1:79199250-79199269 Msa1041620:CDS 45.0%
GGCTGATGTTGTAGTTGAAG+AGG - chr7_1:79199370-79199389 Msa1041620:CDS 45.0%
CAAATCCGAGGTTGACGATT+TGG + chr7_1:79199541-79199560 None:intergenic 45.0%
ACTTCACGTAGTCGGTATAC+GGG + chr7_1:79199585-79199604 None:intergenic 45.0%
GACTTCACGTAGTCGGTATA+CGG + chr7_1:79199586-79199605 None:intergenic 45.0%
GGGGTGAGTTTGACAGATTT+AGG + chr7_1:79199631-79199650 None:intergenic 45.0%
GCATGCATTAGAGCAGTTAG+TGG + chr7_1:79199989-79200008 None:intergenic 45.0%
TCTTCTTGCAAATGCTCTGC+AGG + chr7_1:79200301-79200320 None:intergenic 45.0%
AGAGAGTCCTACCAAAACTG+AGG - chr7_1:79200324-79200343 Msa1041620:intron 45.0%
!! CAGGAATCCTCAGTTTTGGT+AGG + chr7_1:79200334-79200353 None:intergenic 45.0%
! CAGACAGGAATCCTCAGTTT+TGG + chr7_1:79200338-79200357 None:intergenic 45.0%
TGTCGAGCCGTTTCTATAAC+TGG + chr7_1:79200365-79200384 None:intergenic 45.0%
AGACACCAATGATGTGGAGA+TGG - chr7_1:79200435-79200454 Msa1041620:CDS 45.0%
!!! TAAAAAATTGAATTTTTTTA+GGG - chr7_1:79198374-79198393 Msa1041620:CDS 5.0%
GAAGATGAGAGGACCAGTGA+TGG - chr7_1:79197805-79197824 Msa1041620:three_prime_UTR 50.0%
! GGTGGTGGTAGTAGTGTGAA+GGG - chr7_1:79197842-79197861 Msa1041620:three_prime_UTR 50.0%
GGAAGAAGAGGAAGCAGAGA+CGG - chr7_1:79197863-79197882 Msa1041620:three_prime_UTR 50.0%
GCAGCTAACATTAACGCTGC+TGG + chr7_1:79197905-79197924 None:intergenic 50.0%
CTCCATTGGATGATGAACGG+CGG + chr7_1:79197981-79198000 None:intergenic 50.0%
GTAGGCCATCCAATCTCCAT+TGG + chr7_1:79197995-79198014 None:intergenic 50.0%
AGGTACCTAGCACTAGGAAC+AGG + chr7_1:79198106-79198125 None:intergenic 50.0%
TCCCGGTGGAGATTATCAGT+TGG + chr7_1:79198204-79198223 None:intergenic 50.0%
GCAGTGCGGATGAAAGTAGT+CGG + chr7_1:79198241-79198260 None:intergenic 50.0%
GCAGGAGAGGTTATACTCAC+AGG - chr7_1:79198965-79198984 Msa1041620:intron 50.0%
GAGAGGTTATACTCACAGGG+AGG - chr7_1:79198969-79198988 Msa1041620:intron 50.0%
AGGCTCTGCGATTTCTTGCA+GGG + chr7_1:79199500-79199519 None:intergenic 50.0%
TAGGCTCTGCGATTTCTTGC+AGG + chr7_1:79199501-79199520 None:intergenic 50.0%
GGGATCCAAATCGTCAACCT+CGG - chr7_1:79199533-79199552 Msa1041620:CDS 50.0%
!! CTGCTGTTGCTGTTTCTTCG+CGG + chr7_1:79200063-79200082 None:intergenic 50.0%
AAACGGCTCGACAACAACTG+AGG - chr7_1:79200372-79200391 Msa1041620:intron 50.0%
AACGGCTCGACAACAACTGA+GGG - chr7_1:79200373-79200392 Msa1041620:intron 50.0%
! AGAGGACCAGTGATGGTGAG+TGG - chr7_1:79197812-79197831 Msa1041620:three_prime_UTR 55.0%
CATCCACCACTCACCATCAC+TGG + chr7_1:79197821-79197840 None:intergenic 55.0%
!! GTGATGGTGAGTGGTGGATG+CGG - chr7_1:79197821-79197840 Msa1041620:three_prime_UTR 55.0%
! CGGTGGTGGTAGTAGTGTGA+AGG - chr7_1:79197841-79197860 Msa1041620:three_prime_UTR 55.0%
AGAAGAGGAAGCAGAGACGG+CGG - chr7_1:79197866-79197885 Msa1041620:three_prime_UTR 55.0%
ACGGCGGAGATTACATCGTC+AGG + chr7_1:79197965-79197984 None:intergenic 55.0%
CTCCGCCGTTCATCATCCAA+TGG - chr7_1:79197976-79197995 Msa1041620:three_prime_UTR 55.0%
CTAGCACTAGGAACAGGAGC+AGG + chr7_1:79198100-79198119 None:intergenic 55.0%
CTGCTCCTGTTCCTAGTGCT+AGG - chr7_1:79198098-79198117 Msa1041620:CDS 55.0%
TCTCCACCGGGAAAACTGAC+TGG - chr7_1:79198212-79198231 Msa1041620:CDS 55.0%
GTGCGGATGAAAGTAGTCGG+TGG + chr7_1:79198238-79198257 None:intergenic 55.0%
GGCTCTGCGATTTCTTGCAG+GGG + chr7_1:79199499-79199518 None:intergenic 55.0%
! GGACCAGTGATGGTGAGTGG+TGG - chr7_1:79197815-79197834 Msa1041620:three_prime_UTR 60.0%
!! ATGGTGAGTGGTGGATGCGG+TGG - chr7_1:79197824-79197843 Msa1041620:three_prime_UTR 60.0%
GAAGAGGAAGCAGAGACGGC+GGG - chr7_1:79197867-79197886 Msa1041620:three_prime_UTR 60.0%
AAGAGGAAGCAGAGACGGCG+GGG - chr7_1:79197868-79197887 Msa1041620:three_prime_UTR 60.0%
! TGGCCAGTCAGTTTTCCCGG+TGG + chr7_1:79198218-79198237 None:intergenic 60.0%
! CGGTGGCCAGTCAGTTTTCC+CGG + chr7_1:79198221-79198240 None:intergenic 60.0%
!! GTGAGTGGTGGATGCGGTGG+TGG - chr7_1:79197827-79197846 Msa1041620:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 79197621 79200886 79197621 ID=Msa1041620;Name=Msa1041620
chr7_1 mRNA 79197621 79200886 79197621 ID=Msa1041620-mRNA-1;Parent=Msa1041620;Name=Msa1041620-mRNA-1;_AED=0.13;_eAED=0.13;_QI=188|1|1|1|1|1|4|376|438
chr7_1 exon 79197621 79198530 79197621 ID=Msa1041620-mRNA-1:exon:21371;Parent=Msa1041620-mRNA-1
chr7_1 exon 79199056 79199406 79199056 ID=Msa1041620-mRNA-1:exon:21370;Parent=Msa1041620-mRNA-1
chr7_1 exon 79199509 79199629 79199509 ID=Msa1041620-mRNA-1:exon:21369;Parent=Msa1041620-mRNA-1
chr7_1 exon 79200388 79200886 79200388 ID=Msa1041620-mRNA-1:exon:21368;Parent=Msa1041620-mRNA-1
chr7_1 five_prime_UTR 79200699 79200886 79200699 ID=Msa1041620-mRNA-1:five_prime_utr;Parent=Msa1041620-mRNA-1
chr7_1 CDS 79200388 79200698 79200388 ID=Msa1041620-mRNA-1:cds;Parent=Msa1041620-mRNA-1
chr7_1 CDS 79199509 79199629 79199509 ID=Msa1041620-mRNA-1:cds;Parent=Msa1041620-mRNA-1
chr7_1 CDS 79199056 79199406 79199056 ID=Msa1041620-mRNA-1:cds;Parent=Msa1041620-mRNA-1
chr7_1 CDS 79197997 79198530 79197997 ID=Msa1041620-mRNA-1:cds;Parent=Msa1041620-mRNA-1
chr7_1 three_prime_UTR 79197621 79197996 79197621 ID=Msa1041620-mRNA-1:three_prime_utr;Parent=Msa1041620-mRNA-1
Gene Sequence

>Msa1041620

ATGAGAGGACCAGTGATGGTGAGTGGTGGATGCGGTGGTGGTAGTAGTGTGAAGGGAAGAAGAGGAAGCAGAGACGGCGGGGAAGAAGTGTCGCCAGCAGCGTTAATGTTAGCTGCTTTGAAGAAATCAATGGTTGCTTGTAGTGTGGAGAGTCCTGACGATGTAATCTCCGCCGTTCATCATCCAATGGAGATTGGATGGCCTACAAATGTTAAGCATGTTAGCCATGTCACGTTTGATCGTTTTAATGGGTTTTTGGGTCTTCCTCTTGAGCTTGAAGTTCATGTTCCTGCTCCTGTTCCTAGTGCTAGTGTTAGTGTGTTTGGTGTCTCAGCAGAATCAATGCAATGTTCTTATGATTCAAAAGGAAACAGTGTCCCCACTATTCTGTTACTAATGCAGGAGAGGTTATACTCACAGGGAGGACTAAAGGCTGAAGGAATATTTCGTATAAATCCAGAAAATGGTGAAGAGGAACATTTGAGGGAGCAATTGAATAGTGGCATTGTGCCAAATGACATTGATGTACATTGTTTGGCTGGCTTAATTAAAGCATGGTTTAGGGAACTTCCTTCAGGAGTGTTAGATGGACTTTCACCTGAGGAAGTTCTTGAATGCAACACTGAAGAAGAATCTGTTGAGCTTGTGAAGCAGCTGAAACCAGTTGAATCAGCTTTGCTTAATTGGGCTGTTGATCTTATGGCTGATGTTGTAGTTGAAGAGGATTATAACAAAATGGATGCTAGGAATATTGCTATGGTTTTTGCTCCAAATATGACTCAGATGTCTGATCCACTAACTGCTCTAATGCATGCGGTCCAAGTGATGAATTTACTGAAAACACTGATATTGAAGACACTTCGAGACCGCGAAGAAACAGCAACAGCAGAATATTCATCCATGTCATCTCATTCATCAGATGAATATGACAGTCAACAAGAAATGTATACTAGCGGTGAATTGAAAAGAACCAAGTTAGATTATGATGATCATGTTGACTACAGCCACAACATTGAAGAAGCTGCATCTGCTCTAAGTGAGATAGAAGAATGCTTCTTAGAACAATTGGATGATGTTCAGACAAAACGATTCACAAAAGAAAAACCTGCAGAGCATTTGCAAGAAGAGTTAGAGAGTCCTACCAAAACTGAGGATTCCTGTCTGAGTTCCAGTTATAGAAACGGCTCGACAACAACTGAGGGATCAAATGCTGACACAAGTAGTCCATCAATAGAAAGTAAAGACACCAATGATGTGGAGATGGTAGATAAATTTAGTGATTCTGTTTCACTCTTGCCTTTGTTTGCATCTAATTAA

Protein sequence

>Msa1041620

MRGPVMVSGGCGGGSSVKGRRGSRDGGEEVSPAALMLAALKKSMVACSVESPDDVISAVHHPMEIGWPTNVKHVSHVTFDRFNGFLGLPLELEVHVPAPVPSASVSVFGVSAESMQCSYDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENGEEEHLREQLNSGIVPNDIDVHCLAGLIKAWFRELPSGVLDGLSPEEVLECNTEEESVELVKQLKPVESALLNWAVDLMADVVVEEDYNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILKTLRDREETATAEYSSMSSHSSDEYDSQQEMYTSGELKRTKLDYDDHVDYSHNIEEAASALSEIEECFLEQLDDVQTKRFTKEKPAEHLQEELESPTKTEDSCLSSSYRNGSTTTEGSNADTSSPSIESKDTNDVEMVDKFSDSVSLLPLFASN*