Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298180 | XP_003596831.1 | 95.175 | 456 | 17 | 1 | 1 | 456 | 1 | 451 | 0.0 | 895 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298180 | sp|Q9FMR1|RGAP1_ARATH | 59.506 | 405 | 136 | 6 | 52 | 456 | 90 | 466 | 1.45e-150 | 439 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298180 | G7ITU3 | 95.175 | 456 | 17 | 1 | 1 | 456 | 1 | 451 | 0.0 | 895 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025060 | Msa0298180 | 0.811606 | 6.437203e-51 | -8.615850e-47 |
| Msa0028450 | Msa0298180 | 0.811854 | 5.683562e-51 | -8.615850e-47 |
| Msa0032210 | Msa0298180 | 0.808266 | 3.369953e-50 | -8.615850e-47 |
| Msa0089410 | Msa0298180 | 0.801189 | 1.012770e-48 | -8.615850e-47 |
| Msa0092750 | Msa0298180 | 0.809014 | 2.332566e-50 | -8.615850e-47 |
| Msa0095550 | Msa0298180 | 0.801945 | 7.087546e-49 | -8.615850e-47 |
| Msa0136520 | Msa0298180 | 0.804996 | 1.651821e-49 | -8.615850e-47 |
| Msa0143360 | Msa0298180 | 0.801262 | 9.785047e-49 | -8.615850e-47 |
| Msa0172110 | Msa0298180 | 0.806557 | 7.765033e-50 | -8.615850e-47 |
| Msa0172530 | Msa0298180 | 0.812988 | 3.213149e-51 | -8.615850e-47 |
| Msa0172580 | Msa0298180 | 0.802600 | 5.194947e-49 | -8.615850e-47 |
| Msa0219140 | Msa0298180 | 0.934950 | 1.822902e-96 | -8.615850e-47 |
| Msa0258960 | Msa0298180 | 0.929123 | 1.090949e-92 | -8.615850e-47 |
| Msa0266120 | Msa0298180 | 0.820764 | 5.771974e-53 | -8.615850e-47 |
| Msa0298180 | Msa0304040 | 0.813647 | 2.301957e-51 | -8.615850e-47 |
| Msa0298180 | Msa0335990 | 0.866390 | 2.951983e-65 | -8.615850e-47 |
| Msa0298180 | Msa0384130 | 0.845332 | 4.339219e-59 | -8.615850e-47 |
| Msa0298180 | Msa0434840 | 0.817933 | 2.550173e-52 | -8.615850e-47 |
| Msa0298180 | Msa0478750 | 0.842834 | 2.029669e-58 | -8.615850e-47 |
| Msa0298180 | Msa0499950 | 0.804489 | 2.108060e-49 | -8.615850e-47 |
| Msa0298180 | Msa0522830 | 0.859963 | 2.875252e-63 | -8.615850e-47 |
| Msa0298180 | Msa0553940 | 0.813284 | 2.766963e-51 | -8.615850e-47 |
| Msa0298180 | Msa0587060 | 0.802599 | 5.196841e-49 | -8.615850e-47 |
| Msa0298180 | Msa0648410 | 0.839886 | 1.211900e-57 | -8.615850e-47 |
| Msa0298180 | Msa0690920 | 0.846489 | 2.103376e-59 | -8.615850e-47 |
| Msa0298180 | Msa0744070 | 0.817928 | 2.556865e-52 | -8.615850e-47 |
| Msa0298180 | Msa0762390 | 0.812629 | 3.851440e-51 | -8.615850e-47 |
| Msa0298180 | Msa0762470 | 0.805498 | 1.296975e-49 | -8.615850e-47 |
| Msa0298180 | Msa0825300 | 0.815370 | 9.573584e-52 | -8.615850e-47 |
| Msa0298180 | Msa0854520 | 0.803093 | 4.109267e-49 | -8.615850e-47 |
| Msa0298180 | Msa0854560 | 0.813595 | 2.363944e-51 | -8.615850e-47 |
| Msa0298180 | Msa0967920 | 0.808706 | 2.714454e-50 | -8.615850e-47 |
| Msa0298180 | Msa1041620 | 0.819918 | 9.023198e-53 | -8.615850e-47 |
| Msa0298180 | Msa1081650 | 0.852527 | 4.353139e-61 | -8.615850e-47 |
| Msa0298180 | Msa1166520 | 0.808956 | 2.400070e-50 | -8.615850e-47 |
| Msa0298180 | Msa1235960 | 0.803861 | 2.847731e-49 | -8.615850e-47 |
| Msa0298180 | Msa1235990 | 0.801254 | 9.819941e-49 | -8.615850e-47 |
| Msa0298180 | Msa1239870 | -0.800608 | 1.330783e-48 | -8.615850e-47 |
| Msa0298180 | Msa1252220 | 0.806575 | 7.697705e-50 | -8.615850e-47 |
| Msa0298180 | Msa1258600 | -0.801522 | 8.652876e-49 | -8.615850e-47 |
| Msa0298180 | Msa1316090 | 0.806019 | 1.007962e-49 | -8.615850e-47 |
| Msa0298180 | Msa1357760 | 0.819526 | 1.108751e-52 | -8.615850e-47 |
| Msa0298180 | Msa1397550 | 0.804481 | 2.116063e-49 | -8.615850e-47 |
| Msa0298180 | Msa1400940 | -0.805957 | 1.038577e-49 | -8.615850e-47 |
| Msa0298180 | Msa1443430 | 0.876680 | 1.152106e-68 | -8.615850e-47 |
| Msa0298180 | Msa1458250 | 0.802217 | 6.229791e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298180 | MtrunA17_Chr2g0321541 | 95.175 | 456 | 17 | 1 | 1 | 456 | 1 | 451 | 0.0 | 895 |
| Msa0298180 | MtrunA17_Chr7g0266501 | 55.263 | 418 | 163 | 6 | 52 | 456 | 71 | 477 | 1.50e-149 | 434 |
| Msa0298180 | MtrunA17_Chr4g0026251 | 72.069 | 290 | 75 | 2 | 55 | 344 | 73 | 356 | 2.28e-146 | 422 |
| Msa0298180 | MtrunA17_Chr8g0346171 | 59.880 | 334 | 116 | 4 | 47 | 380 | 79 | 394 | 2.11e-130 | 386 |
| Msa0298180 | MtrunA17_Chr1g0196181 | 74.026 | 231 | 60 | 0 | 78 | 308 | 67 | 297 | 5.71e-123 | 366 |
| Msa0298180 | MtrunA17_Chr7g0268531 | 65.251 | 259 | 85 | 1 | 55 | 308 | 32 | 290 | 3.56e-111 | 335 |
| Msa0298180 | MtrunA17_Chr5g0426461 | 75.974 | 154 | 33 | 1 | 117 | 270 | 16 | 165 | 4.01e-77 | 238 |
| Msa0298180 | MtrunA17_Chr7g0250591 | 55.251 | 219 | 91 | 3 | 117 | 335 | 14 | 225 | 9.40e-72 | 226 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298180 | AT5G22400.1 | 59.506 | 405 | 136 | 6 | 52 | 456 | 90 | 466 | 1.47e-151 | 439 |
| Msa0298180 | AT3G11490.1 | 58.192 | 354 | 109 | 4 | 25 | 347 | 19 | 364 | 1.98e-132 | 389 |
| Msa0298180 | AT2G46710.1 | 63.574 | 291 | 102 | 2 | 21 | 308 | 44 | 333 | 3.14e-125 | 372 |
| Msa0298180 | AT1G08340.1 | 69.796 | 245 | 74 | 0 | 78 | 322 | 1 | 245 | 3.68e-125 | 367 |
| Msa0298180 | AT4G03100.1 | 63.504 | 274 | 89 | 1 | 50 | 312 | 39 | 312 | 6.02e-122 | 362 |
Find 95 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAAGGTTGCAAATTTCTA+AGG | 0.198022 | 2_3:+52114159 | Msa0298180:three_prime_UTR |
| TCTTGAAAATGCTTATATTA+AGG | 0.202458 | 2_3:+52113605 | Msa0298180:CDS |
| GTAAGTTTGTTTAAAGTATA+AGG | 0.221431 | 2_3:+52114143 | Msa0298180:three_prime_UTR |
| ATATTATTTGTTGCGTGTTT+TGG | 0.231978 | 2_3:-52110787 | None:intergenic |
| TGATAGGTTCAATGGTTTCT+TGG | 0.248536 | 2_3:+52111327 | Msa0298180:CDS |
| CCTAGCACTAGGAGGCCTTC+TGG | 0.256375 | 2_3:-52111380 | None:intergenic |
| AAAAGTGTCGGTCGAGAAAA+AGG | 0.290122 | 2_3:+52114017 | Msa0298180:CDS |
| TGTCATGGTGGCAATGAAAA+AGG | 0.303033 | 2_3:-52111029 | None:intergenic |
| GGAACTTCCTAGCGGCGTTC+TGG | 0.311234 | 2_3:+52113203 | Msa0298180:CDS |
| GATAGGTTCAATGGTTTCTT+GGG | 0.329734 | 2_3:+52111328 | Msa0298180:CDS |
| TTGTCTGGCAGGACTAATTA+AGG | 0.347959 | 2_3:+52112403 | Msa0298180:CDS |
| GAAGGTTCTAAATTCAATCT+TGG | 0.352625 | 2_3:-52113667 | None:intergenic |
| CAATACAGTCTTCCTCAGTT+TGG | 0.364130 | 2_3:-52113257 | None:intergenic |
| GTATGTTCAAGAAGGGTTGC+AGG | 0.366227 | 2_3:+52112175 | Msa0298180:CDS |
| CTGAAGCTGCACTCTTGGAT+TGG | 0.367227 | 2_3:+52113304 | Msa0298180:CDS |
| TGCATTAACAGAAGAATTGT+TGG | 0.374854 | 2_3:-52112143 | None:intergenic |
| GAAGTTGAAGTTGAAGTTGA+AGG | 0.390622 | 2_3:-52111109 | None:intergenic |
| TCCTCAACTGAAAGAGAATC+TGG | 0.397060 | 2_3:+52113829 | Msa0298180:CDS |
| GTTGTTGTGTAACATGTTGT+TGG | 0.400032 | 2_3:+52110694 | Msa0298180:five_prime_UTR |
| AGTAGTTCAAATGCTAGAAA+AGG | 0.402969 | 2_3:+52113955 | Msa0298180:CDS |
| TCATGCTGAAGCTGCACTCT+TGG | 0.410731 | 2_3:+52113299 | Msa0298180:CDS |
| GAACAGACCTGAGTCATGTT+TGG | 0.422768 | 2_3:-52113408 | None:intergenic |
| CTAGCACTAGGAGGCCTTCT+GGG | 0.423002 | 2_3:-52111379 | None:intergenic |
| CAATGTACATCAATGTCTTC+AGG | 0.428431 | 2_3:-52112383 | None:intergenic |
| TACATCAGCCATTAGATTGA+TGG | 0.431052 | 2_3:-52113328 | None:intergenic |
| GGAGGCCTTCTGGGAAAATC+AGG | 0.439195 | 2_3:-52111370 | None:intergenic |
| GTTAGGAATCAATTGAACTT+AGG | 0.440142 | 2_3:+52112353 | Msa0298180:CDS |
| GGATTGGGCCATCAATCTAA+TGG | 0.467322 | 2_3:+52113320 | Msa0298180:CDS |
| TGAAGCTGCACTCTTGGATT+GGG | 0.473582 | 2_3:+52113305 | Msa0298180:CDS |
| AAATCAGGTTCAAACTCATC+AGG | 0.480208 | 2_3:-52111355 | None:intergenic |
| AAGTAAAATGAGGTGGAGAA+TGG | 0.481632 | 2_3:-52111060 | None:intergenic |
| ATAGTCAAGAGGAACATGTT+AGG | 0.482181 | 2_3:+52112336 | Msa0298180:CDS |
| GCGTACATCAATGCAGTGAA+TGG | 0.486250 | 2_3:-52113565 | None:intergenic |
| GCCAGATTCTCTTTCAGTTG+AGG | 0.491573 | 2_3:-52113830 | None:intergenic |
| GCGACATGGCGAACGTTAGT+TGG | 0.492707 | 2_3:-52111292 | None:intergenic |
| GGACAACAACCTGTGATCAA+TGG | 0.493660 | 2_3:+52113994 | Msa0298180:CDS |
| GAATCAATTGAACTTAGGAT+TGG | 0.495739 | 2_3:+52112358 | Msa0298180:CDS |
| GTAGTTCAAATGCTAGAAAA+GGG | 0.502633 | 2_3:+52113956 | Msa0298180:CDS |
| TGTTACACAACAACATTGAA+AGG | 0.509170 | 2_3:-52110685 | None:intergenic |
| AAAAGGAAGAGTAGAGCTAA+AGG | 0.510961 | 2_3:-52110657 | None:intergenic |
| GATCAGACCGAGTCGAAGCT+TGG | 0.514597 | 2_3:+52114070 | Msa0298180:CDS |
| AACATTGAAAGGGAAACAAA+AGG | 0.515029 | 2_3:-52110674 | None:intergenic |
| GGCATTTGTATGTTCAAGAA+GGG | 0.517493 | 2_3:+52112168 | Msa0298180:CDS |
| AGACATTGATGTACATTGTC+TGG | 0.518937 | 2_3:+52112388 | Msa0298180:CDS |
| AGGCATTTGTATGTTCAAGA+AGG | 0.519056 | 2_3:+52112167 | Msa0298180:CDS |
| TACTTTAAACAAACTTACAA+AGG | 0.523846 | 2_3:-52114138 | None:intergenic |
| TTCACCGCCAAGCTTCGACT+CGG | 0.526197 | 2_3:-52114077 | None:intergenic |
| GTGGGGAAGAATAACAAGTC+TGG | 0.528840 | 2_3:+52113925 | Msa0298180:CDS |
| CAAAAGTAACGTGTGCGACA+TGG | 0.530420 | 2_3:-52111306 | None:intergenic |
| TTTGTACATGTATAGGTGGA+AGG | 0.531414 | 2_3:+52112290 | Msa0298180:intron |
| AAGGACGCTACGAGAAAGAA+AGG | 0.533822 | 2_3:+52113624 | Msa0298180:CDS |
| GGAAAATGTGGTTGCGAAGG+AGG | 0.535139 | 2_3:-52111175 | None:intergenic |
| GTTACACAACAACATTGAAA+GGG | 0.536375 | 2_3:-52110684 | None:intergenic |
| TTGTTGCCACTACTCTTGAA+AGG | 0.537642 | 2_3:-52111241 | None:intergenic |
| CAATTCTTCTGTTAATGCAA+AGG | 0.543052 | 2_3:+52112147 | Msa0298180:CDS |
| TTATTTCCTTTCAAGAGTAG+TGG | 0.553770 | 2_3:+52111235 | Msa0298180:CDS |
| ATAAGGTTGCAAATTTCTAA+GGG | 0.554414 | 2_3:+52114160 | Msa0298180:three_prime_UTR |
| ATTGATGTACATTGTCTGGC+AGG | 0.558765 | 2_3:+52112392 | Msa0298180:CDS |
| AGTGGAAAATGTGGTTGCGA+AGG | 0.560047 | 2_3:-52111178 | None:intergenic |
| TTGTACATGTATAGGTGGAA+GGG | 0.562108 | 2_3:+52112291 | Msa0298180:intron |
| AAATGAGAAATAGTAAGACT+TGG | 0.562992 | 2_3:-52110894 | None:intergenic |
| CCAGAAGGCCTCCTAGTGCT+AGG | 0.566429 | 2_3:+52111380 | Msa0298180:CDS |
| GAAATGACTCGAAAAGTCTA+CGG | 0.568493 | 2_3:-52113705 | None:intergenic |
| CGGTGTACATTCTCATCAGA+AGG | 0.569866 | 2_3:-52113685 | None:intergenic |
| CAACAAAGACCTTTGCAACA+TGG | 0.570037 | 2_3:+52111258 | Msa0298180:CDS |
| GGAATCAGATTTCATTACAA+TGG | 0.570601 | 2_3:-52114319 | None:intergenic |
| GACTTATGTCCATGTTGCAA+AGG | 0.574114 | 2_3:-52111267 | None:intergenic |
| GAAGTTGAAGTTGAAGGTGT+TGG | 0.580577 | 2_3:-52111103 | None:intergenic |
| AATGAGTCCAGAACGCCGCT+AGG | 0.582282 | 2_3:-52113210 | None:intergenic |
| TGAGAATCTAATTTGCAATG+AGG | 0.590817 | 2_3:+52113870 | Msa0298180:CDS |
| AAGAGTGCAGCTTCAGCATG+AGG | 0.593298 | 2_3:-52113297 | None:intergenic |
| CAGTTATCTTATGATTCAAG+AGG | 0.593577 | 2_3:+52112110 | Msa0298180:CDS |
| TAATGCAGACAATAGTCAAG+AGG | 0.607790 | 2_3:+52112325 | Msa0298180:CDS |
| ACATGGCGAACGTTAGTTGG+AGG | 0.608049 | 2_3:-52111289 | None:intergenic |
| GAACGCGCGCAACATTGCCA+TGG | 0.618131 | 2_3:+52113377 | Msa0298180:CDS |
| TATTACATATACCTAGCACT+AGG | 0.623513 | 2_3:-52111391 | None:intergenic |
| TGCAGCAGCAGACAATGAAG+AGG | 0.625545 | 2_3:+52113741 | Msa0298180:CDS |
| AGTTAGAATGAAGAAAAGTG+TGG | 0.627548 | 2_3:-52110848 | None:intergenic |
| TATATAAGTTAAACAAACAC+AGG | 0.627876 | 2_3:-52114224 | None:intergenic |
| GTTAGAATGAAGAAAAGTGT+GGG | 0.630052 | 2_3:-52110847 | None:intergenic |
| TGGCAAGAGAATGAAGAGAG+AGG | 0.631862 | 2_3:-52111139 | None:intergenic |
| TGTGATCAATGGAAAAGTGT+CGG | 0.637614 | 2_3:+52114005 | Msa0298180:CDS |
| AGTTATCTTATGATTCAAGA+GGG | 0.643572 | 2_3:+52112111 | Msa0298180:CDS |
| TACATATACCTAGCACTAGG+AGG | 0.644832 | 2_3:-52111388 | None:intergenic |
| TTTCCTCCGAAAAGAAACGT+GGG | 0.647448 | 2_3:+52113907 | Msa0298180:CDS |
| AAGACTGTATTGAACTAGTG+AGG | 0.648835 | 2_3:+52113268 | Msa0298180:CDS |
| GATGATGAAGTAAAATGAGG+TGG | 0.654198 | 2_3:-52111067 | None:intergenic |
| GTTGATGATGAAGTAAAATG+AGG | 0.658128 | 2_3:-52111070 | None:intergenic |
| CAGACCGAGTCGAAGCTTGG+CGG | 0.664957 | 2_3:+52114073 | Msa0298180:CDS |
| GTTTCCTCCGAAAAGAAACG+TGG | 0.672738 | 2_3:+52113906 | Msa0298180:CDS |
| AGAATGGAGAACTTCTGTCA+TGG | 0.691349 | 2_3:-52111044 | None:intergenic |
| TTCCTCCGAAAAGAAACGTG+GGG | 0.693572 | 2_3:+52113908 | Msa0298180:CDS |
| ATGGAGAACTTCTGTCATGG+TGG | 0.693833 | 2_3:-52111041 | None:intergenic |
| AGTAATGCAATGCCAAACTG+AGG | 0.695720 | 2_3:+52113245 | Msa0298180:CDS |
| TGGTTTCGGGAACTTCCTAG+CGG | 0.730728 | 2_3:+52113195 | Msa0298180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTACGTTTTTAAAA+AGG | + | chr2_3:52112592-52112611 | Msa0298180:intron | 10.0% |
| !! | ATCATAAAACTTTACATATA+GGG | - | chr2_3:52112992-52113011 | None:intergenic | 15.0% |
| !!! | TATAAAAGCATTAATGAAAA+AGG | - | chr2_3:52113126-52113145 | None:intergenic | 15.0% |
| !!! | TATTTTCTGAATTAAGAAAG+TGG | - | chr2_3:52110954-52110973 | None:intergenic | 20.0% |
| !! | TTATTAACAAAAATAAGCGA+TGG | - | chr2_3:52111506-52111525 | None:intergenic | 20.0% |
| !! | TTATGACATATAAATGGTAA+AGG | - | chr2_3:52111574-52111593 | None:intergenic | 20.0% |
| !! | ACCATTTATATGTCATAATT+TGG | + | chr2_3:52111576-52111595 | Msa0298180:intron | 20.0% |
| !! | TCCAAATTATGACATATAAA+TGG | - | chr2_3:52111580-52111599 | None:intergenic | 20.0% |
| !! | TCATAATTTGGATTGAATTT+AGG | + | chr2_3:52111588-52111607 | Msa0298180:intron | 20.0% |
| !! | CATAATTTGGATTGAATTTA+GGG | + | chr2_3:52111589-52111608 | Msa0298180:intron | 20.0% |
| !! | ACCATTTATATGTCATAATT+TGG | + | chr2_3:52111576-52111595 | Msa0298180:intron | 20.0% |
| !! | TCCAAATTATGACATATAAA+TGG | - | chr2_3:52111580-52111599 | None:intergenic | 20.0% |
| !! | TCATAATTTGGATTGAATAA+GGG | + | chr2_3:52111812-52111831 | Msa0298180:intron | 20.0% |
| !!! | TCAAAAACTATCTAAGATTT+TGG | + | chr2_3:52111902-52111921 | Msa0298180:intron | 20.0% |
| !! | AAAATCAAACAAAAAAAGAG+AGG | - | chr2_3:52112047-52112066 | None:intergenic | 20.0% |
| !!! | AATATTTAGGATGGTAAATT+GGG | + | chr2_3:52112827-52112846 | Msa0298180:intron | 20.0% |
| !! | GATCATAAAACTTTACATAT+AGG | - | chr2_3:52112993-52113012 | None:intergenic | 20.0% |
| !! | TCTTGAAAATGCTTATATTA+AGG | + | chr2_3:52113605-52113624 | Msa0298180:CDS | 20.0% |
| !! | TACTTTAAACAAACTTACAA+AGG | - | chr2_3:52114141-52114160 | None:intergenic | 20.0% |
| !!! | GTAAGTTTGTTTAAAGTATA+AGG | + | chr2_3:52114143-52114162 | Msa0298180:three_prime_UTR | 20.0% |
| !! | TATATAAGTTAAACAAACAC+AGG | - | chr2_3:52114227-52114246 | None:intergenic | 20.0% |
| !!! | ATATTATTTGTTGCGTGTTT+TGG | - | chr2_3:52110790-52110809 | None:intergenic | 25.0% |
| !! | ATCATGAAGTGAGTATTTTA+AGG | - | chr2_3:52110819-52110838 | None:intergenic | 25.0% |
| ! | AAATGAGAAATAGTAAGACT+TGG | - | chr2_3:52110897-52110916 | None:intergenic | 25.0% |
| ! | TACATAACTAAATGAACGAT+TGG | + | chr2_3:52111618-52111637 | Msa0298180:intron | 25.0% |
| ! | AGTAGTGTGTATATAATTCA+TGG | + | chr2_3:52111725-52111744 | Msa0298180:intron | 25.0% |
| ! | GTCATAATTTGGATTGAATA+AGG | + | chr2_3:52111811-52111830 | Msa0298180:intron | 25.0% |
| ! | GAGGAAAAAGTAAAACAAAA+AGG | - | chr2_3:52112028-52112047 | None:intergenic | 25.0% |
| ! | AGTTATCTTATGATTCAAGA+GGG | + | chr2_3:52112111-52112130 | Msa0298180:CDS | 25.0% |
| ! | ACTAGTTCAATTATATTGCT+TGG | + | chr2_3:52112254-52112273 | Msa0298180:intron | 25.0% |
| ! | AGTTGAATTTGTACATGTAT+AGG | + | chr2_3:52112283-52112302 | Msa0298180:intron | 25.0% |
| !!! | ATGTTGAATAGTTTTGCTAT+AGG | + | chr2_3:52112548-52112567 | Msa0298180:intron | 25.0% |
| ! | TTTGTCTCATTTATTAGACT+TGG | - | chr2_3:52112742-52112761 | None:intergenic | 25.0% |
| !! | CAATATTTAGGATGGTAAAT+TGG | + | chr2_3:52112826-52112845 | Msa0298180:intron | 25.0% |
| ! | ATATATCCTGTAGTTATGAA+TGG | + | chr2_3:52112856-52112875 | Msa0298180:intron | 25.0% |
| ! | AAACTTTACATATAGGGTAA+AGG | - | chr2_3:52112986-52113005 | None:intergenic | 25.0% |
| !! | TTTTCAAAGATGAAAATGCA+TGG | - | chr2_3:52113079-52113098 | None:intergenic | 25.0% |
| !! | TGATATTCTTGTACTTTTCA+AGG | + | chr2_3:52113170-52113189 | Msa0298180:intron | 25.0% |
| ! | GCTAAACTATTATTAGTTCA+TGG | + | chr2_3:52113468-52113487 | Msa0298180:intron | 25.0% |
| !! | TTCAAGTTAATCACAGTATT+TGG | + | chr2_3:52113518-52113537 | Msa0298180:intron | 25.0% |
| ! | TATAAGGTTGCAAATTTCTA+AGG | + | chr2_3:52114159-52114178 | Msa0298180:three_prime_UTR | 25.0% |
| ! | ATAAGGTTGCAAATTTCTAA+GGG | + | chr2_3:52114160-52114179 | Msa0298180:three_prime_UTR | 25.0% |
| AACATTGAAAGGGAAACAAA+AGG | - | chr2_3:52110677-52110696 | None:intergenic | 30.0% | |
| GTTACACAACAACATTGAAA+GGG | - | chr2_3:52110687-52110706 | None:intergenic | 30.0% | |
| TGTTACACAACAACATTGAA+AGG | - | chr2_3:52110688-52110707 | None:intergenic | 30.0% | |
| ! | GTTAGAATGAAGAAAAGTGT+GGG | - | chr2_3:52110850-52110869 | None:intergenic | 30.0% |
| AGTTAGAATGAAGAAAAGTG+TGG | - | chr2_3:52110851-52110870 | None:intergenic | 30.0% | |
| !! | GTTGATGATGAAGTAAAATG+AGG | - | chr2_3:52111073-52111092 | None:intergenic | 30.0% |
| TTATTTCCTTTCAAGAGTAG+TGG | + | chr2_3:52111235-52111254 | Msa0298180:CDS | 30.0% | |
| !!! | GTTACTTTTGATAGGTTCAA+TGG | + | chr2_3:52111319-52111338 | Msa0298180:CDS | 30.0% |
| TATTACATATACCTAGCACT+AGG | - | chr2_3:52111394-52111413 | None:intergenic | 30.0% | |
| GCGATGGAAATAAATAAAAC+TGG | - | chr2_3:52111490-52111509 | None:intergenic | 30.0% | |
| GTGACAATGCATTACTAAAT+TGG | + | chr2_3:52111834-52111853 | Msa0298180:intron | 30.0% | |
| ! | AACTATGCTAAGAAAAGCAT+AGG | + | chr2_3:52111940-52111959 | Msa0298180:intron | 30.0% |
| ATGATTCGTTCGCTAATTAA+AGG | - | chr2_3:52111985-52112004 | None:intergenic | 30.0% | |
| CAGTTATCTTATGATTCAAG+AGG | + | chr2_3:52112110-52112129 | Msa0298180:CDS | 30.0% | |
| TGCATTAACAGAAGAATTGT+TGG | - | chr2_3:52112146-52112165 | None:intergenic | 30.0% | |
| CAATTCTTCTGTTAATGCAA+AGG | + | chr2_3:52112147-52112166 | Msa0298180:CDS | 30.0% | |
| TGAATTTGTACATGTATAGG+TGG | + | chr2_3:52112286-52112305 | Msa0298180:intron | 30.0% | |
| GTTAGGAATCAATTGAACTT+AGG | + | chr2_3:52112353-52112372 | Msa0298180:CDS | 30.0% | |
| GAATCAATTGAACTTAGGAT+TGG | + | chr2_3:52112358-52112377 | Msa0298180:CDS | 30.0% | |
| TGATTCATCATGTAACTGAT+TGG | + | chr2_3:52112682-52112701 | Msa0298180:intron | 30.0% | |
| !! | ACATCATTTTCAAGACACAT+TGG | + | chr2_3:52112766-52112785 | Msa0298180:intron | 30.0% |
| TTACCATCCTAAATATTGCA+TGG | - | chr2_3:52112824-52112843 | None:intergenic | 30.0% | |
| AAATGTCCATTCATAACTAC+AGG | - | chr2_3:52112865-52112884 | None:intergenic | 30.0% | |
| AAAGGAGTTGAAGAAGTTAA+AGG | - | chr2_3:52112968-52112987 | None:intergenic | 30.0% | |
| TCTGATAGTACTTATACCTT+AGG | + | chr2_3:52113495-52113514 | Msa0298180:intron | 30.0% | |
| !! | GAAGGTTCTAAATTCAATCT+TGG | - | chr2_3:52113670-52113689 | None:intergenic | 30.0% |
| ! | TGAGAATCTAATTTGCAATG+AGG | + | chr2_3:52113870-52113889 | Msa0298180:CDS | 30.0% |
| AGTAGTTCAAATGCTAGAAA+AGG | + | chr2_3:52113955-52113974 | Msa0298180:CDS | 30.0% | |
| GTAGTTCAAATGCTAGAAAA+GGG | + | chr2_3:52113956-52113975 | Msa0298180:CDS | 30.0% | |
| AAAAGGAAGAGTAGAGCTAA+AGG | - | chr2_3:52110660-52110679 | None:intergenic | 35.0% | |
| GTTGTTGTGTAACATGTTGT+TGG | + | chr2_3:52110694-52110713 | Msa0298180:five_prime_UTR | 35.0% | |
| ! | GTTTTGTGTGTTAGATAGAG+TGG | - | chr2_3:52110737-52110756 | None:intergenic | 35.0% |
| !! | TTTTGAGTATTGTGTTGAGC+TGG | - | chr2_3:52110874-52110893 | None:intergenic | 35.0% |
| AAGTAAAATGAGGTGGAGAA+TGG | - | chr2_3:52111063-52111082 | None:intergenic | 35.0% | |
| GATGATGAAGTAAAATGAGG+TGG | - | chr2_3:52111070-52111089 | None:intergenic | 35.0% | |
| GAAGTTGAAGTTGAAGTTGA+AGG | - | chr2_3:52111112-52111131 | None:intergenic | 35.0% | |
| AGCTCAAAAAGTGGAAAATG+TGG | - | chr2_3:52111190-52111209 | None:intergenic | 35.0% | |
| GTTACTAGTAGCTCAAAAAG+TGG | - | chr2_3:52111199-52111218 | None:intergenic | 35.0% | |
| TGATAGGTTCAATGGTTTCT+TGG | + | chr2_3:52111327-52111346 | Msa0298180:CDS | 35.0% | |
| GATAGGTTCAATGGTTTCTT+GGG | + | chr2_3:52111328-52111347 | Msa0298180:CDS | 35.0% | |
| AAATCAGGTTCAAACTCATC+AGG | - | chr2_3:52111358-52111377 | None:intergenic | 35.0% | |
| GCATTACTAAATTGGATGCT+TGG | + | chr2_3:52111842-52111861 | Msa0298180:intron | 35.0% | |
| ATTCGTTCGCTAATTAAAGG+CGG | - | chr2_3:52111982-52112001 | None:intergenic | 35.0% | |
| ! | ACATGTAGTGCAACTGTTTT+TGG | + | chr2_3:52112068-52112087 | Msa0298180:intron | 35.0% |
| AGGCATTTGTATGTTCAAGA+AGG | + | chr2_3:52112167-52112186 | Msa0298180:CDS | 35.0% | |
| GGCATTTGTATGTTCAAGAA+GGG | + | chr2_3:52112168-52112187 | Msa0298180:CDS | 35.0% | |
| TTTGTACATGTATAGGTGGA+AGG | + | chr2_3:52112290-52112309 | Msa0298180:intron | 35.0% | |
| TTGTACATGTATAGGTGGAA+GGG | + | chr2_3:52112291-52112310 | Msa0298180:intron | 35.0% | |
| TAATGCAGACAATAGTCAAG+AGG | + | chr2_3:52112325-52112344 | Msa0298180:CDS | 35.0% | |
| ATAGTCAAGAGGAACATGTT+AGG | + | chr2_3:52112336-52112355 | Msa0298180:CDS | 35.0% | |
| CAATGTACATCAATGTCTTC+AGG | - | chr2_3:52112386-52112405 | None:intergenic | 35.0% | |
| AGACATTGATGTACATTGTC+TGG | + | chr2_3:52112388-52112407 | Msa0298180:CDS | 35.0% | |
| GGACTAATTAAGGTATGACA+TGG | + | chr2_3:52112413-52112432 | Msa0298180:intron | 35.0% | |
| GTTTCGTGAATTGATCTGAA+TGG | + | chr2_3:52112489-52112508 | Msa0298180:intron | 35.0% | |
| TCATGTAACTGATTGGAGAA+AGG | + | chr2_3:52112689-52112708 | Msa0298180:intron | 35.0% | |
| AGCTACACCATGCAATATTT+AGG | + | chr2_3:52112814-52112833 | Msa0298180:intron | 35.0% | |
| ACACCATGCAATATTTAGGA+TGG | + | chr2_3:52112818-52112837 | Msa0298180:intron | 35.0% | |
| !!! | GTTAGTTTTTTCTCCTTCAC+CGG | + | chr2_3:52112927-52112946 | Msa0298180:intron | 35.0% |
| !! | TTCTTGTACTTTTCAAGGCT+TGG | + | chr2_3:52113175-52113194 | Msa0298180:intron | 35.0% |
| !! | TACTTTTCAAGGCTTGGTTT+CGG | + | chr2_3:52113181-52113200 | Msa0298180:intron | 35.0% |
| AAGACTGTATTGAACTAGTG+AGG | + | chr2_3:52113268-52113287 | Msa0298180:CDS | 35.0% | |
| TACATCAGCCATTAGATTGA+TGG | - | chr2_3:52113331-52113350 | None:intergenic | 35.0% | |
| ! | CTGTGATTAACTTGAACCTA+AGG | - | chr2_3:52113514-52113533 | None:intergenic | 35.0% |
| GAAATGACTCGAAAAGTCTA+CGG | - | chr2_3:52113708-52113727 | None:intergenic | 35.0% | |
| !!! | GGAGTTTTTTTCGAGTGATT+CGG | - | chr2_3:52113812-52113831 | None:intergenic | 35.0% |
| ! | TTGTTGTCCTCTTGTCTTTT+TGG | - | chr2_3:52113983-52114002 | None:intergenic | 35.0% |
| ! | TGTGATCAATGGAAAAGTGT+CGG | + | chr2_3:52114005-52114024 | Msa0298180:CDS | 35.0% |
| TGTCATGGTGGCAATGAAAA+AGG | - | chr2_3:52111032-52111051 | None:intergenic | 40.0% | |
| AGAATGGAGAACTTCTGTCA+TGG | - | chr2_3:52111047-52111066 | None:intergenic | 40.0% | |
| ! | GAAGTTGAAGTTGAAGGTGT+TGG | - | chr2_3:52111106-52111125 | None:intergenic | 40.0% |
| AAGGAGGTTGAAAAATGGCA+TGG | - | chr2_3:52111162-52111181 | None:intergenic | 40.0% | |
| TTGCGAAGGAGGTTGAAAAA+TGG | - | chr2_3:52111167-52111186 | None:intergenic | 40.0% | |
| TTGTTGCCACTACTCTTGAA+AGG | - | chr2_3:52111244-52111263 | None:intergenic | 40.0% | |
| CAACAAAGACCTTTGCAACA+TGG | + | chr2_3:52111258-52111277 | Msa0298180:CDS | 40.0% | |
| GACTTATGTCCATGTTGCAA+AGG | - | chr2_3:52111270-52111289 | None:intergenic | 40.0% | |
| !!! | TCGCACACGTTACTTTTGAT+AGG | + | chr2_3:52111311-52111330 | Msa0298180:CDS | 40.0% |
| ! | TTGAACCTGATTTTCCCAGA+AGG | + | chr2_3:52111365-52111384 | Msa0298180:CDS | 40.0% |
| TACATATACCTAGCACTAGG+AGG | - | chr2_3:52111391-52111410 | None:intergenic | 40.0% | |
| ATTGATGTACATTGTCTGGC+AGG | + | chr2_3:52112392-52112411 | Msa0298180:CDS | 40.0% | |
| TTGTCTGGCAGGACTAATTA+AGG | + | chr2_3:52112403-52112422 | Msa0298180:CDS | 40.0% | |
| !! | ACTTTTCAAGGCTTGGTTTC+GGG | + | chr2_3:52113182-52113201 | Msa0298180:intron | 40.0% |
| AGTAATGCAATGCCAAACTG+AGG | + | chr2_3:52113245-52113264 | Msa0298180:CDS | 40.0% | |
| CAATACAGTCTTCCTCAGTT+TGG | - | chr2_3:52113260-52113279 | None:intergenic | 40.0% | |
| !! | TTGGCTTTTCTGATTGCAGA+TGG | + | chr2_3:52113537-52113556 | Msa0298180:intron | 40.0% |
| TCCTCAACTGAAAGAGAATC+TGG | + | chr2_3:52113829-52113848 | Msa0298180:CDS | 40.0% | |
| TTTCCTCCGAAAAGAAACGT+GGG | + | chr2_3:52113907-52113926 | Msa0298180:CDS | 40.0% | |
| ! | TTCTTCCCCACGTTTCTTTT+CGG | - | chr2_3:52113916-52113935 | None:intergenic | 40.0% |
| AAAGGGTCCAAAAAGACAAG+AGG | + | chr2_3:52113973-52113992 | Msa0298180:CDS | 40.0% | |
| ! | GACACTTTTCCATTGATCAC+AGG | - | chr2_3:52114006-52114025 | None:intergenic | 40.0% |
| !! | AAAAGTGTCGGTCGAGAAAA+AGG | + | chr2_3:52114017-52114036 | Msa0298180:CDS | 40.0% |
| !! | AAAGTGTCGGTCGAGAAAAA+GGG | + | chr2_3:52114018-52114037 | Msa0298180:CDS | 40.0% |
| ATGGAGAACTTCTGTCATGG+TGG | - | chr2_3:52111044-52111063 | None:intergenic | 45.0% | |
| TGGCAAGAGAATGAAGAGAG+AGG | - | chr2_3:52111142-52111161 | None:intergenic | 45.0% | |
| AGTGGAAAATGTGGTTGCGA+AGG | - | chr2_3:52111181-52111200 | None:intergenic | 45.0% | |
| CAAAAGTAACGTGTGCGACA+TGG | - | chr2_3:52111309-52111328 | None:intergenic | 45.0% | |
| GTATGTTCAAGAAGGGTTGC+AGG | + | chr2_3:52112175-52112194 | Msa0298180:CDS | 45.0% | |
| AAGGACCAGTGTTCAAACTC+CGG | - | chr2_3:52112949-52112968 | None:intergenic | 45.0% | |
| TGAAGCTGCACTCTTGGATT+GGG | + | chr2_3:52113305-52113324 | Msa0298180:CDS | 45.0% | |
| GGATTGGGCCATCAATCTAA+TGG | + | chr2_3:52113320-52113339 | Msa0298180:CDS | 45.0% | |
| CATGTTTGGCGCAAAAACCA+TGG | - | chr2_3:52113397-52113416 | None:intergenic | 45.0% | |
| ! | TTTTGCGCCAAACATGACTC+AGG | + | chr2_3:52113401-52113420 | Msa0298180:CDS | 45.0% |
| GAACAGACCTGAGTCATGTT+TGG | - | chr2_3:52113411-52113430 | None:intergenic | 45.0% | |
| GCGTACATCAATGCAGTGAA+TGG | - | chr2_3:52113568-52113587 | None:intergenic | 45.0% | |
| AAGGACGCTACGAGAAAGAA+AGG | + | chr2_3:52113624-52113643 | Msa0298180:CDS | 45.0% | |
| CGGTGTACATTCTCATCAGA+AGG | - | chr2_3:52113688-52113707 | None:intergenic | 45.0% | |
| GCCAGATTCTCTTTCAGTTG+AGG | - | chr2_3:52113833-52113852 | None:intergenic | 45.0% | |
| GTTTCCTCCGAAAAGAAACG+TGG | + | chr2_3:52113906-52113925 | Msa0298180:CDS | 45.0% | |
| TTCCTCCGAAAAGAAACGTG+GGG | + | chr2_3:52113908-52113927 | Msa0298180:CDS | 45.0% | |
| GTGGGGAAGAATAACAAGTC+TGG | + | chr2_3:52113925-52113944 | Msa0298180:CDS | 45.0% | |
| GGACAACAACCTGTGATCAA+TGG | + | chr2_3:52113994-52114013 | Msa0298180:CDS | 45.0% | |
| !! | AAAAATATATAAAAAAAGAA+AGG | - | chr2_3:52110989-52111008 | None:intergenic | 5.0% |
| !! | AAAATAAAAAAAAGTTTAAT+TGG | - | chr2_3:52113433-52113452 | None:intergenic | 5.0% |
| !!! | AATTAAACTTTTTTTTATTT+TGG | + | chr2_3:52113432-52113451 | Msa0298180:intron | 5.0% |
| GGAAAATGTGGTTGCGAAGG+AGG | - | chr2_3:52111178-52111197 | None:intergenic | 50.0% | |
| ACATGGCGAACGTTAGTTGG+AGG | - | chr2_3:52111292-52111311 | None:intergenic | 50.0% | |
| CAGTGTTCAAACTCCGGTGA+AGG | - | chr2_3:52112943-52112962 | None:intergenic | 50.0% | |
| CTTCACCGGAGTTTGAACAC+TGG | + | chr2_3:52112941-52112960 | Msa0298180:intron | 50.0% | |
| TGGTTTCGGGAACTTCCTAG+CGG | + | chr2_3:52113195-52113214 | Msa0298180:CDS | 50.0% | |
| ! | AAGAGTGCAGCTTCAGCATG+AGG | - | chr2_3:52113300-52113319 | None:intergenic | 50.0% |
| TCATGCTGAAGCTGCACTCT+TGG | + | chr2_3:52113299-52113318 | Msa0298180:CDS | 50.0% | |
| CTGAAGCTGCACTCTTGGAT+TGG | + | chr2_3:52113304-52113323 | Msa0298180:CDS | 50.0% | |
| TGCAGCAGCAGACAATGAAG+AGG | + | chr2_3:52113741-52113760 | Msa0298180:CDS | 50.0% | |
| ! | TTCCCCACGTTTCTTTTCGG+AGG | - | chr2_3:52113913-52113932 | None:intergenic | 50.0% |
| CGGTCGAGAAAAAGGGAATG+AGG | + | chr2_3:52114025-52114044 | Msa0298180:CDS | 50.0% | |
| GCGACATGGCGAACGTTAGT+TGG | - | chr2_3:52111295-52111314 | None:intergenic | 55.0% | |
| ! | GGAGGCCTTCTGGGAAAATC+AGG | - | chr2_3:52111373-52111392 | None:intergenic | 55.0% |
| CTAGCACTAGGAGGCCTTCT+GGG | - | chr2_3:52111382-52111401 | None:intergenic | 55.0% | |
| AATGAGTCCAGAACGCCGCT+AGG | - | chr2_3:52113213-52113232 | None:intergenic | 55.0% | |
| GATCAGACCGAGTCGAAGCT+TGG | + | chr2_3:52114070-52114089 | Msa0298180:CDS | 55.0% | |
| TTCACCGCCAAGCTTCGACT+CGG | - | chr2_3:52114080-52114099 | None:intergenic | 55.0% | |
| CCTAGCACTAGGAGGCCTTC+TGG | - | chr2_3:52111383-52111402 | None:intergenic | 60.0% | |
| CCAGAAGGCCTCCTAGTGCT+AGG | + | chr2_3:52111380-52111399 | Msa0298180:CDS | 60.0% | |
| GGAACTTCCTAGCGGCGTTC+TGG | + | chr2_3:52113203-52113222 | Msa0298180:CDS | 60.0% | |
| GAACGCGCGCAACATTGCCA+TGG | + | chr2_3:52113377-52113396 | Msa0298180:CDS | 60.0% | |
| CAGACCGAGTCGAAGCTTGG+CGG | + | chr2_3:52114073-52114092 | Msa0298180:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 52110655 | 52114339 | 52110655 | ID=Msa0298180;Name=Msa0298180 |
| chr2_3 | mRNA | 52110655 | 52114339 | 52110655 | ID=Msa0298180-mRNA-1;Parent=Msa0298180;Name=Msa0298180-mRNA-1;_AED=0.19;_eAED=0.19;_QI=391|1|1|1|1|1|5|241|456 |
| chr2_3 | exon | 52110655 | 52111401 | 52110655 | ID=Msa0298180-mRNA-1:exon:16641;Parent=Msa0298180-mRNA-1 |
| chr2_3 | exon | 52112076 | 52112196 | 52112076 | ID=Msa0298180-mRNA-1:exon:16642;Parent=Msa0298180-mRNA-1 |
| chr2_3 | exon | 52112305 | 52112424 | 52112305 | ID=Msa0298180-mRNA-1:exon:16643;Parent=Msa0298180-mRNA-1 |
| chr2_3 | exon | 52113192 | 52113422 | 52113192 | ID=Msa0298180-mRNA-1:exon:16644;Parent=Msa0298180-mRNA-1 |
| chr2_3 | exon | 52113556 | 52114339 | 52113556 | ID=Msa0298180-mRNA-1:exon:16645;Parent=Msa0298180-mRNA-1 |
| chr2_3 | five_prime_UTR | 52110655 | 52111045 | 52110655 | ID=Msa0298180-mRNA-1:five_prime_utr;Parent=Msa0298180-mRNA-1 |
| chr2_3 | CDS | 52111046 | 52111401 | 52111046 | ID=Msa0298180-mRNA-1:cds;Parent=Msa0298180-mRNA-1 |
| chr2_3 | CDS | 52112076 | 52112196 | 52112076 | ID=Msa0298180-mRNA-1:cds;Parent=Msa0298180-mRNA-1 |
| chr2_3 | CDS | 52112305 | 52112424 | 52112305 | ID=Msa0298180-mRNA-1:cds;Parent=Msa0298180-mRNA-1 |
| chr2_3 | CDS | 52113192 | 52113422 | 52113192 | ID=Msa0298180-mRNA-1:cds;Parent=Msa0298180-mRNA-1 |
| chr2_3 | CDS | 52113556 | 52114098 | 52113556 | ID=Msa0298180-mRNA-1:cds;Parent=Msa0298180-mRNA-1 |
| chr2_3 | three_prime_UTR | 52114099 | 52114339 | 52114099 | ID=Msa0298180-mRNA-1:three_prime_utr;Parent=Msa0298180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
