AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1166520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1166520 MtrunA17_Chr7g0268531 97.945 438 6 1 1 438 1 435 0.0 880
Msa1166520 MtrunA17_Chr1g0196181 64.667 450 98 10 40 438 44 483 0.0 538
Msa1166520 MtrunA17_Chr8g0346171 67.766 273 80 3 35 307 87 351 1.20e-131 388
Msa1166520 MtrunA17_Chr7g0266501 64.158 279 95 1 30 308 69 342 9.28e-126 373
Msa1166520 MtrunA17_Chr4g0026251 64.286 266 86 1 28 293 66 322 4.62e-124 364
Msa1166520 MtrunA17_Chr2g0321541 63.139 274 96 1 35 308 50 318 1.91e-120 358
Msa1166520 MtrunA17_Chr7g0250591 73.786 206 47 2 102 307 14 212 2.66e-98 293
Msa1166520 MtrunA17_Chr5g0426461 61.783 157 56 1 102 258 16 168 2.93e-63 201
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1166520 AT4G03100.1 66.479 355 92 4 30 358 39 392 3.92e-161 461
Msa1166520 AT2G46710.1 67.586 290 86 5 35 320 77 362 4.88e-135 396
Msa1166520 AT5G22400.1 64.437 284 95 2 29 312 87 364 2.24e-129 382
Msa1166520 AT3G11490.1 60.606 297 107 3 35 327 69 359 2.62e-122 363
Msa1166520 AT1G08340.1 63.673 245 89 0 63 307 1 245 2.78e-113 336

Find 100 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAAATAGTTTAGTATATT+TGG 0.064059 7_4:+58614272 None:intergenic
TTGAATCAGCTTTGCTTAAT+TGG 0.091752 7_4:-58615617 Msa1166520:CDS
GTGCTTGTTAATCTATTCTT+AGG 0.184145 7_4:-58614214 Msa1166520:three_prime_UTR
TCCAAATATACTAAACTATT+TGG 0.186491 7_4:-58614273 Msa1166520:three_prime_UTR
TAATTGGGCTGTTGATCTTA+TGG 0.232844 7_4:-58615601 Msa1166520:CDS
GCTTAATTAAAGCATGGTTT+AGG 0.267143 7_4:-58615740 Msa1166520:CDS
AAGCATACCTGAGTCATATT+TGG 0.279990 7_4:+58615513 None:intergenic
CTTAATTAAAGCATGGTTTA+GGG 0.299820 7_4:-58615739 Msa1166520:CDS
TGTCGAGCCGTTTCTATAAC+TGG 0.304547 7_4:+58614588 None:intergenic
TTTCGTATAAATCCAGAAAA+TGG 0.307758 7_4:-58615837 Msa1166520:CDS
GTGTCTTTACTTTCTATTGA+TGG 0.311575 7_4:+58614532 None:intergenic
TGAAGAGGATTATAACAAAA+TGG 0.341839 7_4:-58615565 Msa1166520:CDS
AGAATGCTTCTTAGAACAAT+TGG 0.343443 7_4:-58614710 Msa1166520:CDS
CTTCCTTCAGGAGTGTTAGA+TGG 0.358229 7_4:-58615714 Msa1166520:CDS
AATTGCAGTGTTAGTGTGTT+TGG 0.363248 7_4:-58616080 Msa1166520:intron
CTTGTGTATACTTGATTAGT+AGG 0.370251 7_4:-58614365 Msa1166520:three_prime_UTR
CTAACATGCTTAACATTTGT+AGG 0.376675 7_4:+58616940 None:intergenic
TGAATCAGCTTTGCTTAATT+GGG 0.382771 7_4:-58615616 Msa1166520:CDS
AATTTGAGCTTCTTGTTGTC+AGG 0.386910 7_4:-58614438 Msa1166520:three_prime_UTR
TGGTTTAGGGAACTTCCTTC+AGG 0.390002 7_4:-58615726 Msa1166520:CDS
ATCTACCATCTCCACATCAT+TGG 0.394673 7_4:+58614510 None:intergenic
TGACATTGATGTACATTGTT+TGG 0.396606 7_4:-58615766 Msa1166520:CDS
GAAGAGGAAGCAGAGACGGC+GGG 0.403827 7_4:-58617083 Msa1166520:CDS
CAGACAGGAATCCTCAGTTT+TGG 0.410752 7_4:+58614615 None:intergenic
TTAAGCAAAGCTGATTCAAC+TGG 0.417940 7_4:+58615621 None:intergenic
TTTGGACACATAACATAATC+AGG 0.421537 7_4:+58614290 None:intergenic
CAATGTACATCAATGTCATT+TGG 0.423147 7_4:+58615771 None:intergenic
GTGAGTGGTGGATGCGGTGG+TGG 0.428914 7_4:-58617123 Msa1166520:CDS
TGCTTGTTAATCTATTCTTA+GGG 0.431102 7_4:-58614213 Msa1166520:three_prime_UTR
TCTTCTTGCAAATGCTCTGC+AGG 0.433059 7_4:+58614652 None:intergenic
ATTAGCTACGAATTTCATCT+AGG 0.433903 7_4:-58614246 Msa1166520:three_prime_UTR
CAATGTTCTTATGATTCAAA+AGG 0.438953 7_4:-58616038 Msa1166520:CDS
CTGCATTAGTAACAGAATAG+TGG 0.443345 7_4:+58616004 None:intergenic
CTGCTGTTGCTGTTTCTTCG+CGG 0.447979 7_4:+58614890 None:intergenic
AGAAGAGGAAGCAGAGACGG+CGG 0.455159 7_4:-58617084 Msa1166520:CDS
CACTATTCTGTTACTAATGC+AGG 0.459853 7_4:-58616003 Msa1166520:CDS
GTTCATCATCCAATGGAGAT+TGG 0.485515 7_4:-58616967 Msa1166520:CDS
TTGAGGGAGCAATTGAATAG+TGG 0.488849 7_4:-58615801 Msa1166520:CDS
AGGTACCTAGCACTAGGAAC+AGG 0.489014 7_4:+58616847 None:intergenic
ATTGATGTACATTGTTTGGC+TGG 0.490876 7_4:-58615762 Msa1166520:CDS
ATGCAGCTTCTTCAATGTTG+TGG 0.493347 7_4:+58614752 None:intergenic
TCTATAACTGGAACTCAGAC+AGG 0.498474 7_4:+58614600 None:intergenic
TGCATTAGTAACAGAATAGT+GGG 0.498479 7_4:+58616005 None:intergenic
GGAAGAAGAGGAAGCAGAGA+CGG 0.498925 7_4:-58617087 Msa1166520:CDS
GCAGGAGAGGTTATACTCAC+AGG 0.501375 7_4:-58615985 Msa1166520:CDS
GCATGCATTAGAGCAGTTAG+TGG 0.503772 7_4:+58614964 None:intergenic
TTGCATTCAAGAACTTCCTC+AGG 0.507388 7_4:+58615684 None:intergenic
CTGCTCCTGTTCCTAGTGCT+AGG 0.511600 7_4:-58616852 Msa1166520:intron
ATTATAACAAAATGGATGCT+AGG 0.516074 7_4:-58615557 Msa1166520:CDS
AGTAGTGTGAAGGGAAGAAG+AGG 0.521967 7_4:-58617099 Msa1166520:CDS
TGGTGAAGAGGAACATTTGA+GGG 0.526583 7_4:-58615817 Msa1166520:CDS
GCAGCTAACATTAACGCTGC+TGG 0.527383 7_4:+58617048 None:intergenic
GTAGGCCATCCAATCTCCAT+TGG 0.529727 7_4:+58616958 None:intergenic
ATACTCACAGGGAGGACTAA+AGG 0.532224 7_4:-58615973 Msa1166520:intron
CATCCACCACTCACCATCAC+TGG 0.532322 7_4:+58617132 None:intergenic
ATTACTCTTGTGAACTTCAA+CGG 0.536185 7_4:+58617326 None:intergenic
CTGAGTTCCAGTTATAGAAA+CGG 0.539389 7_4:-58614595 Msa1166520:CDS
AGCTGCTTTGAAGAAATCAA+TGG 0.544551 7_4:-58617031 Msa1166520:CDS
ATCATCCAATGGAGATTGGA+TGG 0.548029 7_4:-58616963 Msa1166520:CDS
ACGGCGGAGATTACATCGTC+AGG 0.549741 7_4:+58616988 None:intergenic
ATGATCATCATAATCTAACT+TGG 0.553962 7_4:+58614786 None:intergenic
TTCTGTTACTAATGCAGGAG+AGG 0.557243 7_4:-58615998 Msa1166520:CDS
GGATGCTAGGAATATTGCTA+TGG 0.560041 7_4:-58615544 Msa1166520:CDS
TGTGATGGGTTATGTTATGA+AGG 0.562409 7_4:+58617293 None:intergenic
GAAGATGAGAGGACCAGTGA+TGG 0.565192 7_4:-58617145 Msa1166520:exon
CGGTGGTGGTAGTAGTGTGA+AGG 0.570136 7_4:-58617109 Msa1166520:CDS
GGCTGATGTTGTAGTTGAAG+AGG 0.571255 7_4:-58615580 Msa1166520:CDS
TGGCTGGCTTAATTAAAGCA+TGG 0.577136 7_4:-58615746 Msa1166520:CDS
AAATCCAGAAAATGGTGAAG+AGG 0.577700 7_4:-58615829 Msa1166520:CDS
ACATGAACTTCAAGCTCAAG+AGG 0.579188 7_4:+58616877 None:intergenic
AGACACCAATGATGTGGAGA+TGG 0.581128 7_4:-58614515 Msa1166520:CDS
TAAAACGATCAAACGTGACA+TGG 0.583384 7_4:+58616917 None:intergenic
ATGGTGAAGAGGAACATTTG+AGG 0.585254 7_4:-58615818 Msa1166520:CDS
ATGGTGAGTGGTGGATGCGG+TGG 0.589261 7_4:-58617126 Msa1166520:CDS
CTCCGCCGTTCATCATCCAA+TGG 0.590362 7_4:-58616974 Msa1166520:CDS
ATAAGAAGATAGTGTTTGTG+TGG 0.594668 7_4:-58617172 Msa1166520:five_prime_UTR
CTAGCACTAGGAACAGGAGC+AGG 0.596477 7_4:+58616853 None:intergenic
AAGTAAAGACACCAATGATG+TGG 0.596557 7_4:-58614521 Msa1166520:CDS
AGTCCATCTAACACTCCTGA+AGG 0.599306 7_4:+58615711 None:intergenic
CAGGAGAGGTTATACTCACA+GGG 0.599702 7_4:-58615984 Msa1166520:CDS
ATCTGATGAATGAGATGACA+TGG 0.603264 7_4:+58614858 None:intergenic
AAAGTAAGGTACCTAGCACT+AGG 0.611243 7_4:+58616841 None:intergenic
TCTTAATTAGATGCAAACAA+AGG 0.614596 7_4:+58614460 None:intergenic
AACGGCTCGACAACAACTGA+GGG 0.615985 7_4:-58614577 Msa1166520:CDS
AATCTCCATTGGATGATGAA+CGG 0.625225 7_4:+58616969 None:intergenic
ATCAATGGTTGCTTGTAGTG+TGG 0.627262 7_4:-58617016 Msa1166520:CDS
GTGATGGTGAGTGGTGGATG+CGG 0.627794 7_4:-58617129 Msa1166520:CDS
AAGAGGAAGCAGAGACGGCG+GGG 0.629048 7_4:-58617082 Msa1166520:CDS
AAACGGCTCGACAACAACTG+AGG 0.661142 7_4:-58614578 Msa1166520:CDS
CAACAAGAAATGTATACTAG+CGG 0.664805 7_4:-58614823 Msa1166520:CDS
GGACCAGTGATGGTGAGTGG+TGG 0.667309 7_4:-58617135 Msa1166520:CDS
GGTGGTGGTAGTAGTGTGAA+GGG 0.668108 7_4:-58617108 Msa1166520:CDS
CTCCATTGGATGATGAACGG+CGG 0.679903 7_4:+58616972 None:intergenic
GTTAGATGGACTTTCACCTG+AGG 0.686418 7_4:-58615700 Msa1166520:CDS
AGAGAGTCCTACCAAAACTG+AGG 0.688445 7_4:-58614626 Msa1166520:CDS
ACTAACTGCTCTAATGCATG+CGG 0.693394 7_4:-58614962 Msa1166520:CDS
AGAGGACCAGTGATGGTGAG+TGG 0.694819 7_4:-58617138 Msa1166520:CDS
TGTGTGGAGAAGAAGATGAG+AGG 0.729777 7_4:-58617156 Msa1166520:exon
GCATTAGTAACAGAATAGTG+GGG 0.751385 7_4:+58616006 None:intergenic
GAGAGGTTATACTCACAGGG+AGG 0.769530 7_4:-58615981 Msa1166520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTAAAAAATTGAATTTTTTT+AGG - chr7_4:58614837-58614856 Msa1166520:CDS 10.0%
!!! AAAATTTTAATTATAGCAAT+TGG + chr7_4:58615239-58615258 None:intergenic 10.0%
!! AATTAAAAAATGAAAAAAGA+GGG + chr7_4:58615532-58615551 None:intergenic 10.0%
!! TAATTAAAAAATGAAAAAAG+AGG + chr7_4:58615533-58615552 None:intergenic 10.0%
!!! TTTTTAATTAATGAATTTTC+AGG - chr7_4:58615543-58615562 Msa1166520:CDS 10.0%
!!! AAATTTTGATTTTGAATTTG+AGG + chr7_4:58614207-58614226 None:intergenic 15.0%
!! AAATGAAAAAGAAAAAAGTA+AGG + chr7_4:58614590-58614609 None:intergenic 15.0%
!! AGTAAAAGTTAGTAATTAAA+TGG - chr7_4:58614998-58615017 Msa1166520:intron 15.0%
!!! TTTTGTAGTAACATTTCAAT+GGG - chr7_4:58614800-58614819 Msa1166520:CDS 20.0%
!!! AACTTTTCATCATCAAATAA+AGG + chr7_4:58615054-58615073 None:intergenic 20.0%
!!! AGTTTCTTTGATTTAATGAT+TGG - chr7_4:58615186-58615205 Msa1166520:intron 20.0%
!!! GTTTCTTTGATTTAATGATT+GGG - chr7_4:58615187-58615206 Msa1166520:intron 20.0%
!!! CATGATTTAATAATAGCTTT+TGG + chr7_4:58615262-58615281 None:intergenic 20.0%
!!! AGGGAAAAATATTTTATAGT+TGG + chr7_4:58615513-58615532 None:intergenic 20.0%
!! CAAAAACATTAAAACTTTAG+GGG + chr7_4:58616114-58616133 None:intergenic 20.0%
!! GCAAAAACATTAAAACTTTA+GGG + chr7_4:58616115-58616134 None:intergenic 20.0%
!! TGCAAAAACATTAAAACTTT+AGG + chr7_4:58616116-58616135 None:intergenic 20.0%
!! TCCAAATATACTAAACTATT+TGG - chr7_4:58617141-58617160 Msa1166520:CDS 20.0%
!! TCCAAATAGTTTAGTATATT+TGG + chr7_4:58617145-58617164 None:intergenic 20.0%
!!! GAGTTTTTGATGTTTTTGTT+GGG + chr7_4:58614182-58614201 None:intergenic 25.0%
!!! TGAGTTTTTGATGTTTTTGT+TGG + chr7_4:58614183-58614202 None:intergenic 25.0%
!! AAACTCGAGATTTTACTTAA+GGG - chr7_4:58614727-58614746 Msa1166520:CDS 25.0%
! CTAAATTAGAAACCAACATT+TGG + chr7_4:58614780-58614799 None:intergenic 25.0%
!! GTTTTGTAGTAACATTTCAA+TGG - chr7_4:58614799-58614818 Msa1166520:CDS 25.0%
! TTTGTAGTAACATTTCAATG+GGG - chr7_4:58614801-58614820 Msa1166520:CDS 25.0%
!! TTAGGGTAAGATTTTATTGT+TGG - chr7_4:58614855-58614874 Msa1166520:CDS 25.0%
! TTTCATATTATCCTTCAATG+AGG - chr7_4:58614947-58614966 Msa1166520:CDS 25.0%
! ATGATGAAAAGTTTCCATAA+CGG - chr7_4:58615061-58615080 Msa1166520:intron 25.0%
! AAGAAACTTATTGTAAGTAG+TGG + chr7_4:58615174-58615193 None:intergenic 25.0%
! CAATGTTCTTATGATTCAAA+AGG - chr7_4:58615376-58615395 Msa1166520:intron 25.0%
! TTTCGTATAAATCCAGAAAA+TGG - chr7_4:58615577-58615596 Msa1166520:CDS 25.0%
! CTTAATTAAAGCATGGTTTA+GGG - chr7_4:58615675-58615694 Msa1166520:CDS 25.0%
! TGAAGAGGATTATAACAAAA+TGG - chr7_4:58615849-58615868 Msa1166520:CDS 25.0%
! ATTATAACAAAATGGATGCT+AGG - chr7_4:58615857-58615876 Msa1166520:intron 25.0%
! ATCATTTACACACAAAAATG+TGG + chr7_4:58616276-58616295 None:intergenic 25.0%
!! TTTTCAGTAAATTCATCACT+TGG + chr7_4:58616479-58616498 None:intergenic 25.0%
! ATGATCATCATAATCTAACT+TGG + chr7_4:58616631-58616650 None:intergenic 25.0%
! TCTTAATTAGATGCAAACAA+AGG + chr7_4:58616957-58616976 None:intergenic 25.0%
!! ATTTTGTGTTTTACAAGCAA+GGG - chr7_4:58617023-58617042 Msa1166520:CDS 25.0%
!!! TAGTAGGTTTTTCTTGTTTT+TGG - chr7_4:58617065-58617084 Msa1166520:CDS 25.0%
!! TGCTTGTTAATCTATTCTTA+GGG - chr7_4:58617201-58617220 Msa1166520:five_prime_UTR 25.0%
! AGATTGATTAAGCCTAAAAA+TGG - chr7_4:58617231-58617250 Msa1166520:five_prime_UTR 25.0%
!! CGTTCATGATCAAAATTTTA+TGG - chr7_4:58617270-58617289 Msa1166520:five_prime_UTR 25.0%
ATTACTCTTGTGAACTTCAA+CGG + chr7_4:58614091-58614110 None:intergenic 30.0%
!!! TGTTTGTTTTTGTGTGTGAT+GGG + chr7_4:58614138-58614157 None:intergenic 30.0%
!!! ATGTTTGTTTTTGTGTGTGA+TGG + chr7_4:58614139-58614158 None:intergenic 30.0%
ATAAGAAGATAGTGTTTGTG+TGG - chr7_4:58614242-58614261 Msa1166520:three_prime_UTR 30.0%
CTAACATGCTTAACATTTGT+AGG + chr7_4:58614477-58614496 None:intergenic 30.0%
!! TCACGTTTGATCGTTTTAAT+GGG - chr7_4:58614502-58614521 Msa1166520:CDS 30.0%
!!! TGATCGTTTTAATGGGTTTT+TGG - chr7_4:58614509-58614528 Msa1166520:CDS 30.0%
!!! GATCGTTTTAATGGGTTTTT+GGG - chr7_4:58614510-58614529 Msa1166520:CDS 30.0%
! CAAACTCGAGATTTTACTTA+AGG - chr7_4:58614726-58614745 Msa1166520:CDS 30.0%
TTACTTAAGGGATCTAAATC+CGG - chr7_4:58614739-58614758 Msa1166520:CDS 30.0%
AACTGAAAAAACCTCATTGA+AGG + chr7_4:58614961-58614980 None:intergenic 30.0%
!!! TTCAATGAGGTTTTTTCAGT+TGG - chr7_4:58614960-58614979 Msa1166520:CDS 30.0%
AAAGGCAAATCTCAATAACT+TGG + chr7_4:58615036-58615055 None:intergenic 30.0%
TTGTAAGTAGTGGCATAAAA+CGG + chr7_4:58615164-58615183 None:intergenic 30.0%
TCACAAATCACATCAGAATA+TGG + chr7_4:58615306-58615325 None:intergenic 30.0%
TGCATTAGTAACAGAATAGT+GGG + chr7_4:58615412-58615431 None:intergenic 30.0%
! TATAGTTGGTTCACATAATC+TGG + chr7_4:58615499-58615518 None:intergenic 30.0%
!! TTAATGAATTTTCAGGCTGA+AGG - chr7_4:58615550-58615569 Msa1166520:CDS 30.0%
CAATGTACATCAATGTCATT+TGG + chr7_4:58615646-58615665 None:intergenic 30.0%
TGACATTGATGTACATTGTT+TGG - chr7_4:58615648-58615667 Msa1166520:CDS 30.0%
GCTTAATTAAAGCATGGTTT+AGG - chr7_4:58615674-58615693 Msa1166520:CDS 30.0%
TTGAATCAGCTTTGCTTAAT+TGG - chr7_4:58615797-58615816 Msa1166520:CDS 30.0%
TGAATCAGCTTTGCTTAATT+GGG - chr7_4:58615798-58615817 Msa1166520:CDS 30.0%
AGAGCCTAATAAAATCATGT+GGG - chr7_4:58615977-58615996 Msa1166520:CDS 30.0%
GCATTAAGCATAATTTCGTT+TGG + chr7_4:58616326-58616345 None:intergenic 30.0%
CATGCATGTGTAATATATAC+AGG + chr7_4:58616355-58616374 None:intergenic 30.0%
CAACAAGAAATGTATACTAG+CGG - chr7_4:58616591-58616610 Msa1166520:intron 30.0%
AGAATGCTTCTTAGAACAAT+TGG - chr7_4:58616704-58616723 Msa1166520:intron 30.0%
GTGTCTTTACTTTCTATTGA+TGG + chr7_4:58616885-58616904 None:intergenic 30.0%
! GATTTTGTGTTTTACAAGCA+AGG - chr7_4:58617022-58617041 Msa1166520:CDS 30.0%
! TTTTGTGTTTTACAAGCAAG+GGG - chr7_4:58617024-58617043 Msa1166520:CDS 30.0%
CTTGTGTATACTTGATTAGT+AGG - chr7_4:58617049-58617068 Msa1166520:CDS 30.0%
TTTGGACACATAACATAATC+AGG + chr7_4:58617127-58617146 None:intergenic 30.0%
ATTAGCTACGAATTTCATCT+AGG - chr7_4:58617168-58617187 Msa1166520:five_prime_UTR 30.0%
! GTGCTTGTTAATCTATTCTT+AGG - chr7_4:58617200-58617219 Msa1166520:five_prime_UTR 30.0%
!! ACATAACTAGCACCATTTTT+AGG + chr7_4:58617246-58617265 None:intergenic 30.0%
!! TGTGATGGGTTATGTTATGA+AGG + chr7_4:58614124-58614143 None:intergenic 35.0%
!! AGCTGCTTTGAAGAAATCAA+TGG - chr7_4:58614383-58614402 Msa1166520:three_prime_UTR 35.0%
AATCTCCATTGGATGATGAA+CGG + chr7_4:58614448-58614467 None:intergenic 35.0%
TAAAACGATCAAACGTGACA+TGG + chr7_4:58614500-58614519 None:intergenic 35.0%
! GTCACGTTTGATCGTTTTAA+TGG - chr7_4:58614501-58614520 Msa1166520:CDS 35.0%
! CAACATTTGGTTAGTCCAAA+TGG + chr7_4:58614767-58614786 None:intergenic 35.0%
CATTTGGACTAACCAAATGT+TGG - chr7_4:58614765-58614784 Msa1166520:CDS 35.0%
! GGGTAAGATTTTATTGTTGG+TGG - chr7_4:58614858-58614877 Msa1166520:CDS 35.0%
AGTTTCCATAACGGTAATGT+AGG - chr7_4:58615070-58615089 Msa1166520:intron 35.0%
CAAATCCTACATTACCGTTA+TGG + chr7_4:58615078-58615097 None:intergenic 35.0%
AATTGCAGTGTTAGTGTGTT+TGG - chr7_4:58615334-58615353 Msa1166520:intron 35.0%
GCATTAGTAACAGAATAGTG+GGG + chr7_4:58615411-58615430 None:intergenic 35.0%
CTGCATTAGTAACAGAATAG+TGG + chr7_4:58615413-58615432 None:intergenic 35.0%
CACTATTCTGTTACTAATGC+AGG - chr7_4:58615411-58615430 Msa1166520:intron 35.0%
GTTCACATAATCTGGAAAAC+TGG + chr7_4:58615491-58615510 None:intergenic 35.0%
AAATCCAGAAAATGGTGAAG+AGG - chr7_4:58615585-58615604 Msa1166520:CDS 35.0%
ATTGATGTACATTGTTTGGC+TGG - chr7_4:58615652-58615671 Msa1166520:CDS 35.0%
! TTAAGCAAAGCTGATTCAAC+TGG + chr7_4:58615796-58615815 None:intergenic 35.0%
TAATTGGGCTGTTGATCTTA+TGG - chr7_4:58615813-58615832 Msa1166520:CDS 35.0%
! TTTTGCTCCAAATATGACTC+AGG - chr7_4:58615894-58615913 Msa1166520:intron 35.0%
AAGCATACCTGAGTCATATT+TGG + chr7_4:58615904-58615923 None:intergenic 35.0%
CAGAGCCTAATAAAATCATG+TGG - chr7_4:58615976-58615995 Msa1166520:CDS 35.0%
! GGATCCCACATGATTTTATT+AGG + chr7_4:58615984-58616003 None:intergenic 35.0%
GCATAAAACATTCAAATCCG+AGG + chr7_4:58616017-58616036 None:intergenic 35.0%
TTACACACAAAAATGTGGAG+TGG + chr7_4:58616271-58616290 None:intergenic 35.0%
ATCTGATGAATGAGATGACA+TGG + chr7_4:58616559-58616578 None:intergenic 35.0%
CTGAGTTCCAGTTATAGAAA+CGG - chr7_4:58616819-58616838 Msa1166520:intron 35.0%
AAGTAAAGACACCAATGATG+TGG - chr7_4:58616893-58616912 Msa1166520:CDS 35.0%
! AATTTGAGCTTCTTGTTGTC+AGG - chr7_4:58616976-58616995 Msa1166520:CDS 35.0%
ATCAATGGTTGCTTGTAGTG+TGG - chr7_4:58614398-58614417 Msa1166520:three_prime_UTR 40.0%
GTTCATCATCCAATGGAGAT+TGG - chr7_4:58614447-58614466 Msa1166520:exon 40.0%
ATCATCCAATGGAGATTGGA+TGG - chr7_4:58614451-58614470 Msa1166520:exon 40.0%
ACATGAACTTCAAGCTCAAG+AGG + chr7_4:58614540-58614559 None:intergenic 40.0%
! AAAGTAAGGTACCTAGCACT+AGG + chr7_4:58614576-58614595 None:intergenic 40.0%
!! TGGAGATTATCAGTTGGTGA+TGG + chr7_4:58614662-58614681 None:intergenic 40.0%
GATCTAAATCCGGTTCCATT+TGG - chr7_4:58614749-58614768 Msa1166520:CDS 40.0%
! TTGGTTAGTCCAAATGGAAC+CGG + chr7_4:58614761-58614780 None:intergenic 40.0%
TTCTGTTACTAATGCAGGAG+AGG - chr7_4:58615416-58615435 Msa1166520:intron 40.0%
! TGTTCCTCTTCACCATTTTC+TGG + chr7_4:58615592-58615611 None:intergenic 40.0%
ATGGTGAAGAGGAACATTTG+AGG - chr7_4:58615596-58615615 Msa1166520:CDS 40.0%
TGGTGAAGAGGAACATTTGA+GGG - chr7_4:58615597-58615616 Msa1166520:CDS 40.0%
TTGAGGGAGCAATTGAATAG+TGG - chr7_4:58615613-58615632 Msa1166520:CDS 40.0%
!! TGGCTGGCTTAATTAAAGCA+TGG - chr7_4:58615668-58615687 Msa1166520:CDS 40.0%
TTGCATTCAAGAACTTCCTC+AGG + chr7_4:58615733-58615752 None:intergenic 40.0%
GGATGCTAGGAATATTGCTA+TGG - chr7_4:58615870-58615889 Msa1166520:intron 40.0%
ATCTTGTGACTTCACGTAGT+CGG + chr7_4:58616057-58616076 None:intergenic 40.0%
TAGATGAGATGACTCAAGCA+TGG + chr7_4:58616142-58616161 None:intergenic 40.0%
ACTAACTGCTCTAATGCATG+CGG - chr7_4:58616452-58616471 Msa1166520:intron 40.0%
ATGCAGCTTCTTCAATGTTG+TGG + chr7_4:58616665-58616684 None:intergenic 40.0%
TCTATAACTGGAACTCAGAC+AGG + chr7_4:58616817-58616836 None:intergenic 40.0%
ATCTACCATCTCCACATCAT+TGG + chr7_4:58616907-58616926 None:intergenic 40.0%
TGTGTGGAGAAGAAGATGAG+AGG - chr7_4:58614258-58614277 Msa1166520:three_prime_UTR 45.0%
AGTAGTGTGAAGGGAAGAAG+AGG - chr7_4:58614315-58614334 Msa1166520:three_prime_UTR 45.0%
CACCAACTGATAATCTCCAC+CGG - chr7_4:58614663-58614682 Msa1166520:CDS 45.0%
ACCAACTGATAATCTCCACC+GGG - chr7_4:58614664-58614683 Msa1166520:CDS 45.0%
AATCTCGAGTTTGAGCAGTG+CGG + chr7_4:58614719-58614738 None:intergenic 45.0%
CAGGAGAGGTTATACTCACA+GGG - chr7_4:58615430-58615449 Msa1166520:intron 45.0%
ATACTCACAGGGAGGACTAA+AGG - chr7_4:58615441-58615460 Msa1166520:intron 45.0%
TGGTTTAGGGAACTTCCTTC+AGG - chr7_4:58615688-58615707 Msa1166520:CDS 45.0%
!! CTTCCTTCAGGAGTGTTAGA+TGG - chr7_4:58615700-58615719 Msa1166520:CDS 45.0%
AGTCCATCTAACACTCCTGA+AGG + chr7_4:58615706-58615725 None:intergenic 45.0%
! GTTAGATGGACTTTCACCTG+AGG - chr7_4:58615714-58615733 Msa1166520:CDS 45.0%
GGCTGATGTTGTAGTTGAAG+AGG - chr7_4:58615834-58615853 Msa1166520:CDS 45.0%
CAAATCCGAGGTTGACGATT+TGG + chr7_4:58616005-58616024 None:intergenic 45.0%
ACTTCACGTAGTCGGTATAC+GGG + chr7_4:58616049-58616068 None:intergenic 45.0%
GACTTCACGTAGTCGGTATA+CGG + chr7_4:58616050-58616069 None:intergenic 45.0%
GGGGTGAGTTTGACAGATTT+AGG + chr7_4:58616095-58616114 None:intergenic 45.0%
GCATGCATTAGAGCAGTTAG+TGG + chr7_4:58616453-58616472 None:intergenic 45.0%
TCTTCTTGCAAATGCTCTGC+AGG + chr7_4:58616765-58616784 None:intergenic 45.0%
AGAGAGTCCTACCAAAACTG+AGG - chr7_4:58616788-58616807 Msa1166520:intron 45.0%
!! CAGGAATCCTCAGTTTTGGT+AGG + chr7_4:58616798-58616817 None:intergenic 45.0%
! CAGACAGGAATCCTCAGTTT+TGG + chr7_4:58616802-58616821 None:intergenic 45.0%
TGTCGAGCCGTTTCTATAAC+TGG + chr7_4:58616829-58616848 None:intergenic 45.0%
AGACACCAATGATGTGGAGA+TGG - chr7_4:58616899-58616918 Msa1166520:CDS 45.0%
!!! TAAAAAATTGAATTTTTTTA+GGG - chr7_4:58614838-58614857 Msa1166520:CDS 5.0%
GAAGATGAGAGGACCAGTGA+TGG - chr7_4:58614269-58614288 Msa1166520:three_prime_UTR 50.0%
! GGTGGTGGTAGTAGTGTGAA+GGG - chr7_4:58614306-58614325 Msa1166520:three_prime_UTR 50.0%
GGAAGAAGAGGAAGCAGAGA+CGG - chr7_4:58614327-58614346 Msa1166520:three_prime_UTR 50.0%
GCAGCTAACATTAACGCTGC+TGG + chr7_4:58614369-58614388 None:intergenic 50.0%
CTCCATTGGATGATGAACGG+CGG + chr7_4:58614445-58614464 None:intergenic 50.0%
GTAGGCCATCCAATCTCCAT+TGG + chr7_4:58614459-58614478 None:intergenic 50.0%
AGGTACCTAGCACTAGGAAC+AGG + chr7_4:58614570-58614589 None:intergenic 50.0%
TCCCGGTGGAGATTATCAGT+TGG + chr7_4:58614668-58614687 None:intergenic 50.0%
GCAGTGCGGATGAAAGTAGT+CGG + chr7_4:58614705-58614724 None:intergenic 50.0%
GCAGGAGAGGTTATACTCAC+AGG - chr7_4:58615429-58615448 Msa1166520:intron 50.0%
GAGAGGTTATACTCACAGGG+AGG - chr7_4:58615433-58615452 Msa1166520:intron 50.0%
AGGCTCTGCGATTTCTTGCA+GGG + chr7_4:58615964-58615983 None:intergenic 50.0%
TAGGCTCTGCGATTTCTTGC+AGG + chr7_4:58615965-58615984 None:intergenic 50.0%
GGGATCCAAATCGTCAACCT+CGG - chr7_4:58615997-58616016 Msa1166520:CDS 50.0%
!! CTGCTGTTGCTGTTTCTTCG+CGG + chr7_4:58616527-58616546 None:intergenic 50.0%
AAACGGCTCGACAACAACTG+AGG - chr7_4:58616836-58616855 Msa1166520:intron 50.0%
AACGGCTCGACAACAACTGA+GGG - chr7_4:58616837-58616856 Msa1166520:intron 50.0%
! AGAGGACCAGTGATGGTGAG+TGG - chr7_4:58614276-58614295 Msa1166520:three_prime_UTR 55.0%
CATCCACCACTCACCATCAC+TGG + chr7_4:58614285-58614304 None:intergenic 55.0%
!! GTGATGGTGAGTGGTGGATG+CGG - chr7_4:58614285-58614304 Msa1166520:three_prime_UTR 55.0%
! CGGTGGTGGTAGTAGTGTGA+AGG - chr7_4:58614305-58614324 Msa1166520:three_prime_UTR 55.0%
AGAAGAGGAAGCAGAGACGG+CGG - chr7_4:58614330-58614349 Msa1166520:three_prime_UTR 55.0%
ACGGCGGAGATTACATCGTC+AGG + chr7_4:58614429-58614448 None:intergenic 55.0%
CTCCGCCGTTCATCATCCAA+TGG - chr7_4:58614440-58614459 Msa1166520:three_prime_UTR 55.0%
CTAGCACTAGGAACAGGAGC+AGG + chr7_4:58614564-58614583 None:intergenic 55.0%
CTGCTCCTGTTCCTAGTGCT+AGG - chr7_4:58614562-58614581 Msa1166520:CDS 55.0%
AAAGTAGTCGGTGGCCAGTC+AGG + chr7_4:58614693-58614712 None:intergenic 55.0%
GTGCGGATGAAAGTAGTCGG+TGG + chr7_4:58614702-58614721 None:intergenic 55.0%
GGCTCTGCGATTTCTTGCAG+GGG + chr7_4:58615963-58615982 None:intergenic 55.0%
! GGACCAGTGATGGTGAGTGG+TGG - chr7_4:58614279-58614298 Msa1166520:three_prime_UTR 60.0%
!! ATGGTGAGTGGTGGATGCGG+TGG - chr7_4:58614288-58614307 Msa1166520:three_prime_UTR 60.0%
GAAGAGGAAGCAGAGACGGC+GGG - chr7_4:58614331-58614350 Msa1166520:three_prime_UTR 60.0%
AAGAGGAAGCAGAGACGGCG+GGG - chr7_4:58614332-58614351 Msa1166520:three_prime_UTR 60.0%
TCTCCACCGGGAAACCTGAC+TGG - chr7_4:58614676-58614695 Msa1166520:CDS 60.0%
!! GTGAGTGGTGGATGCGGTGG+TGG - chr7_4:58614291-58614310 Msa1166520:three_prime_UTR 65.0%
TGGCCAGTCAGGTTTCCCGG+TGG + chr7_4:58614682-58614701 None:intergenic 65.0%
CGGTGGCCAGTCAGGTTTCC+CGG + chr7_4:58614685-58614704 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 58614086 58617350 58614086 ID=Msa1166520;Name=Msa1166520
chr7_4 mRNA 58614086 58617350 58614086 ID=Msa1166520-mRNA-1;Parent=Msa1166520;Name=Msa1166520-mRNA-1;_AED=0.13;_eAED=0.13;_QI=187|1|1|1|1|1|4|376|438
chr7_4 exon 58614086 58614995 58614086 ID=Msa1166520-mRNA-1:exon:18056;Parent=Msa1166520-mRNA-1
chr7_4 exon 58615521 58615871 58615521 ID=Msa1166520-mRNA-1:exon:18055;Parent=Msa1166520-mRNA-1
chr7_4 exon 58615974 58616094 58615974 ID=Msa1166520-mRNA-1:exon:18054;Parent=Msa1166520-mRNA-1
chr7_4 exon 58616853 58617350 58616853 ID=Msa1166520-mRNA-1:exon:18053;Parent=Msa1166520-mRNA-1
chr7_4 five_prime_UTR 58617164 58617350 58617164 ID=Msa1166520-mRNA-1:five_prime_utr;Parent=Msa1166520-mRNA-1
chr7_4 CDS 58616853 58617163 58616853 ID=Msa1166520-mRNA-1:cds;Parent=Msa1166520-mRNA-1
chr7_4 CDS 58615974 58616094 58615974 ID=Msa1166520-mRNA-1:cds;Parent=Msa1166520-mRNA-1
chr7_4 CDS 58615521 58615871 58615521 ID=Msa1166520-mRNA-1:cds;Parent=Msa1166520-mRNA-1
chr7_4 CDS 58614462 58614995 58614462 ID=Msa1166520-mRNA-1:cds;Parent=Msa1166520-mRNA-1
chr7_4 three_prime_UTR 58614086 58614461 58614086 ID=Msa1166520-mRNA-1:three_prime_utr;Parent=Msa1166520-mRNA-1
Gene Sequence

>Msa1166520

ATGAGAGGACCAGTGATGGTGAGTGGTGGATGCGGTGGTGGTAGTAGTGTGAAGGGAAGAAGAGGAAGCAGAGACGGCGGGGAAGAAGTGTCGCCAGCAGCGTTAATGTTAGCTGCTTTGAAGAAATCAATGGTTGCTTGTAGTGTGGAGAGTCCTGACGATGTAATCTCCGCCGTTCATCATCCAATGGAGATTGGATGGCCTACAAATGTTAAGCATGTTAGCCATGTCACGTTTGATCGTTTTAATGGGTTTTTGGGTCTTCCTCTTGAGCTTGAAGTTCATGTTCCTGCTCCTGTTCCTAGTGCTAGTGTTAGTGTGTTTGGTGTCTCAGCAGAATCAATGCAATGTTCTTATGATTCAAAAGGAAACAGTGTCCCCACTATTCTGTTACTAATGCAGGAGAGGTTATACTCACAGGGAGGACTAAAGGCTGAAGGAATATTTCGTATAAATCCAGAAAATGGTGAAGAGGAACATTTGAGGGAGCAATTGAATAGTGGCATTGTGCCAAATGACATTGATGTACATTGTTTGGCTGGCTTAATTAAAGCATGGTTTAGGGAACTTCCTTCAGGAGTGTTAGATGGACTTTCACCTGAGGAAGTTCTTGAATGCAACACTGAAGAAGAATCTGTTGAGCTTGTGAAGCAGCTGAAACCAGTTGAATCAGCTTTGCTTAATTGGGCTGTTGATCTTATGGCTGATGTTGTAGTTGAAGAGGATTATAACAAAATGGATGCTAGGAATATTGCTATGGTTTTTGCTCCAAATATGACTCAGATGTCTGATCCACTAACTGCTCTAATGCATGCGGTCCAAGTGATGAATTTACTGAAAACACTGATATTGAAGACACTTCGAGACCGCGAAGAAACAGCAACAGCAGAATATTCATCCATGTCATCTCATTCATCAGATGAATATGACAGTCAACAAGAAATGTATACTAGCGGTGAATTGAAAAGAACCAAGTTAGATTATGATGATCATGTTGACTACAGCCACAACATTGAAGAAGCTGCATCTGCTCTAAGTGAGATAGAAGAATGCTTCTTAGAACAATTGGATGATGTTCAGACAAAACGATTCACAAAAGAAAAACCTGCAGAGCATTTGCAAGAAGAGTTAGAGAGTCCTACCAAAACTGAGGATTCCTGTCTGAGTTCCAGTTATAGAAACGGCTCGACAACAACTGAGGGATCAAATGCTGACACAAGTAGTCCATCAATAGAAAGTAAAGACACCAATGATGTGGAGATGGTAGATAAATTTAGTGATTCTGTTTCACTCTTGCCTTTGTTTGCATCTAATTAA

Protein sequence

>Msa1166520

MRGPVMVSGGCGGGSSVKGRRGSRDGGEEVSPAALMLAALKKSMVACSVESPDDVISAVHHPMEIGWPTNVKHVSHVTFDRFNGFLGLPLELEVHVPAPVPSASVSVFGVSAESMQCSYDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENGEEEHLREQLNSGIVPNDIDVHCLAGLIKAWFRELPSGVLDGLSPEEVLECNTEEESVELVKQLKPVESALLNWAVDLMADVVVEEDYNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILKTLRDREETATAEYSSMSSHSSDEYDSQQEMYTSGELKRTKLDYDDHVDYSHNIEEAASALSEIEECFLEQLDDVQTKRFTKEKPAEHLQEELESPTKTEDSCLSSSYRNGSTTTEGSNADTSSPSIESKDTNDVEMVDKFSDSVSLLPLFASN*