AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1086670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1086670 MtrunA17_CPg0492851 99.692 325 1 0 53 377 1 325 0.0 660
Msa1086670 MtrunA17_Chr4g0015731 99.692 325 1 0 53 377 1 325 0.0 660
Msa1086670 MtrunA17_Chr4g0016821 99.692 325 1 0 53 377 1 325 0.0 660
Msa1086670 MtrunA17_Chr4g0016981 83.186 113 4 1 96 208 42 139 1.51e-58 187
Msa1086670 MtrunA17_Chr4g0016991 95.385 65 3 0 313 377 1 65 2.95e-36 126
Msa1086670 MtrunA17_Chr3g0141111 97.561 41 1 0 1 41 15 55 1.77e-22 90.1
Msa1086670 MtrunA17_Chr5g0403621 95.122 41 2 0 1 41 86 126 7.50e-21 88.6
Msa1086670 MtrunA17_CPg0492871 97.561 41 1 0 1 41 86 126 2.06e-20 89.0
Msa1086670 MtrunA17_Chr4g0015721 97.561 41 1 0 1 41 86 126 2.06e-20 89.0
Msa1086670 MtrunA17_Chr4g0016811 97.561 41 1 0 1 41 95 135 2.22e-20 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1086670 ATCG00540.1 90.625 320 30 0 58 377 1 320 0.0 595

Find 86 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTGGCATCTATTATTT+TGG 0.108321 7_2:+87509166 Msa1086670:CDS
TTCTAAGTGGTTATTCTATT+AGG 0.178048 7_2:+87507750 Msa1086670:CDS
ACAAGGTCTGTTGTTCTTCT+TGG 0.210830 7_2:+87509151 Msa1086670:CDS
CTTGTGGTAGGCCCCGTTCC+TGG 0.214230 7_2:+87508735 Msa1086670:CDS
ACATTAGGATTACTCGTTAA+TGG 0.226644 7_2:-87509074 None:intergenic
TCTAAGTGGTTATTCTATTA+GGG 0.279115 7_2:+87507751 Msa1086670:CDS
TAGAATAACCACTTAGAATA+AGG 0.296044 7_2:-87507745 None:intergenic
CTACAGGCTTATTAGCTAAA+TGG 0.299374 7_2:-87508470 None:intergenic
CTATATACGTAGGCGGGAAT+AGG 0.308836 7_2:+87508838 Msa1086670:CDS
CTATATTTCTTCCCAGGAAC+GGG 0.314257 7_2:-87508747 None:intergenic
AATCCTAATGTGGGTGGATT+TGG 0.318985 7_2:+87509086 Msa1086670:CDS
AACTCATTATTCTTAACTCT+TGG 0.323937 7_2:+87507782 Msa1086670:CDS
AAAATTATACGAAAAGAAAA+AGG 0.339453 7_2:+87508939 Msa1086670:CDS
TATATACGTAGGCGGGAATA+GGG 0.340058 7_2:+87508839 Msa1086670:CDS
CTATTCCCGCCTACGTATAT+AGG 0.341092 7_2:-87508837 None:intergenic
GTTAAACAAGTTCTTGCTAA+TGG 0.346567 7_2:+87508567 Msa1086670:CDS
GGTTGTTCGTCTCTATCAAT+TGG 0.367131 7_2:-87507673 None:intergenic
CCCTCTGAAACAAGAAGTTC+TGG 0.373836 7_2:-87509029 None:intergenic
TAATGTGGGTGGATTTGGTC+AGG 0.386047 7_2:+87509091 Msa1086670:CDS
TGACCAAATCCACCCACATT+AGG 0.412065 7_2:-87509089 None:intergenic
TGTTTAACTTGCATATCATA+AGG 0.412925 7_2:-87508552 None:intergenic
ACTCATTATTCTTAACTCTT+GGG 0.414290 7_2:+87507783 Msa1086670:CDS
TCTCTCTTAGTAGCGGGATC+TGG 0.425976 7_2:-87508795 None:intergenic
AATGGGATATGCATTTGAAA+TGG 0.432612 7_2:-87508385 None:intergenic
GTTTATAATGCTACAGCAAC+AGG 0.436701 7_2:+87508906 Msa1086670:CDS
GATCATGAGCAATACGGAAA+TGG 0.442149 7_2:-87508343 None:intergenic
AAATCGTATGGATACGGTCT+TGG 0.446811 7_2:-87507694 None:intergenic
TTGTGGTAGGCCCCGTTCCT+GGG 0.450790 7_2:+87508736 Msa1086670:CDS
TTATTACTCTTGCTCCCGTC+GGG 0.465288 7_2:-87508879 None:intergenic
ATATGTTTCCTTATTCTAAG+TGG 0.468100 7_2:+87507737 Msa1086670:CDS
TACAGAAATGCAAAATCGTA+TGG 0.481344 7_2:-87507706 None:intergenic
ACTGCTTCAAATACAGTATC+GGG 0.488265 7_2:-87508519 None:intergenic
AAAAGCATTTCTAGTTTGCA+TGG 0.489913 7_2:-87508292 None:intergenic
TGGATACGAAATAACGATAG+TGG 0.491690 7_2:+87508962 Msa1086670:CDS
AACTGCTTCAAATACAGTAT+CGG 0.494328 7_2:-87508520 None:intergenic
ATTTCACTATATTTCTTCCC+AGG 0.497196 7_2:-87508753 None:intergenic
ATGGGATATGCATTTGAAAT+GGG 0.502392 7_2:-87508384 None:intergenic
GAGCAATACGGAAATGGATC+GGG 0.505456 7_2:-87508337 None:intergenic
CAAGATCCGTTACGTGTACA+AGG 0.506414 7_2:+87509134 Msa1086670:CDS
TATATAGATCATGAGCAATA+CGG 0.512581 7_2:-87508349 None:intergenic
ATCCGCCCGGTAGCTTCTCT+CGG 0.516777 7_2:-87508432 None:intergenic
AATATCCTATATACGTAGGC+GGG 0.517081 7_2:+87508832 Msa1086670:CDS
TAATAAGCCTGTAGATATTG+AGG 0.521759 7_2:+87508479 Msa1086670:CDS
ATGTGGGTGGATTTGGTCAG+GGG 0.523100 7_2:+87509093 Msa1086670:CDS
TGTGGAACCTCAATATCTAC+AGG 0.524236 7_2:-87508486 None:intergenic
ATTATTACTCTTGCTCCCGT+CGG 0.527873 7_2:-87508880 None:intergenic
CCAGAACTTCTTGTTTCAGA+GGG 0.530598 7_2:+87509029 Msa1086670:CDS
ACTATATTTCTTCCCAGGAA+CGG 0.533921 7_2:-87508748 None:intergenic
AATGTGGGTGGATTTGGTCA+GGG 0.534197 7_2:+87509092 Msa1086670:CDS
ATCTCGGGCGAAATACGATC+AGG 0.534200 7_2:-87508654 None:intergenic
GAAACAAGAAGTTCTGGTCC+TGG 0.545439 7_2:-87509023 None:intergenic
GCGGGATCTGGAGAAAGAAT+AGG 0.547213 7_2:-87508783 None:intergenic
GTAGGCGGGAATAGGGGAAG+GGG 0.547797 7_2:+87508846 Msa1086670:CDS
AATGCAAAATCGTATGGATA+CGG 0.548969 7_2:-87507700 None:intergenic
GTGAACATCTCTCTTAGTAG+CGG 0.549431 7_2:-87508802 None:intergenic
ACCAGAACTTCTTGTTTCAG+AGG 0.553828 7_2:+87509028 Msa1086670:CDS
AAAATCCGAGAGAAGCTACC+GGG 0.554646 7_2:+87508427 Msa1086670:CDS
TGAGCAATACGGAAATGGAT+CGG 0.555873 7_2:-87508338 None:intergenic
GTGATTGATATTATACCGCC+AGG 0.566218 7_2:+87509005 Msa1086670:CDS
TGAACATCTCTCTTAGTAGC+GGG 0.566429 7_2:-87508801 None:intergenic
ATTAACGAGTAATCCTAATG+TGG 0.573726 7_2:+87509076 Msa1086670:CDS
GGGGCCAATTCAAAACCCTC+TGG 0.574508 7_2:-87508630 None:intergenic
GGGGTCAGATTTATCCCGAC+GGG 0.575656 7_2:+87508865 Msa1086670:CDS
ACGTAGGCGGGAATAGGGGA+AGG 0.589088 7_2:+87508844 Msa1086670:CDS
ACGATAGTGGATGCATCGGA+TGG 0.592008 7_2:+87508975 Msa1086670:CDS
ATCTGGAGAAAGAATAGGAA+AGG 0.599901 7_2:-87508778 None:intergenic
AACAGACCTTGTACACGTAA+CGG 0.600684 7_2:-87509140 None:intergenic
GAAAATCCGAGAGAAGCTAC+CGG 0.606144 7_2:+87508426 Msa1086670:CDS
TGTGGGTGGATTTGGTCAGG+GGG 0.611690 7_2:+87509094 Msa1086670:CDS
AAATATCCTATATACGTAGG+CGG 0.616381 7_2:+87508831 Msa1086670:CDS
TTAAAATATCCTATATACGT+AGG 0.623794 7_2:+87508828 Msa1086670:CDS
ACGAGTAATCCTAATGTGGG+TGG 0.626177 7_2:+87509080 Msa1086670:CDS
TCGGGCGAAATACGATCAGG+AGG 0.629985 7_2:-87508651 None:intergenic
ATTAGCACATACAATCCGCC+CGG 0.633238 7_2:-87508445 None:intergenic
AATAACGATAGTGGATGCAT+CGG 0.634066 7_2:+87508971 Msa1086670:CDS
TATATTTCTTCCCAGGAACG+GGG 0.637585 7_2:-87508746 None:intergenic
ATATACGTAGGCGGGAATAG+GGG 0.641009 7_2:+87508840 Msa1086670:CDS
CGTAGGCGGGAATAGGGGAA+GGG 0.650670 7_2:+87508845 Msa1086670:CDS
TTAACGAGTAATCCTAATGT+GGG 0.652400 7_2:+87509077 Msa1086670:CDS
AGATATTGAGGTTCCACAAG+CGG 0.653295 7_2:+87508491 Msa1086670:CDS
CGGGCGAAATACGATCAGGA+GGG 0.656521 7_2:-87508650 None:intergenic
GGGCGAAATACGATCAGGAG+GGG 0.658846 7_2:-87508649 None:intergenic
AGGGGTCAGATTTATCCCGA+CGG 0.672516 7_2:+87508864 Msa1086670:CDS
GTATCGGGAAGTACCGCTTG+TGG 0.687149 7_2:-87508504 None:intergenic
ACAAGAAGTTCTGGTCCTGG+CGG 0.692543 7_2:-87509020 None:intergenic
ATCCGAGAGAAGCTACCGGG+CGG 0.767274 7_2:+87508430 Msa1086670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACATAAATCAGTTAATAAA+AGG - chr7_2:87507858-87507877 None:intergenic 15.0%
!!! TTATTAACTGATTTATGTAT+AGG + chr7_2:87507859-87507878 Msa1086670:intron 15.0%
!!! TAGATACAATTTTAAAATAC+TGG + chr7_2:87507995-87508014 Msa1086670:intron 15.0%
!! AAAATTTCTACAATAAGATT+AGG - chr7_2:87508255-87508274 None:intergenic 15.0%
!!! ACAAGAATATTTTTTTTTGT+GGG - chr7_2:87508720-87508739 None:intergenic 15.0%
!! AAAATTATACGAAAAGAAAA+AGG + chr7_2:87508939-87508958 Msa1086670:CDS 15.0%
!! TAAAAAGAAACAATTTGAAA+AGG + chr7_2:87509208-87509227 Msa1086670:CDS 15.0%
!! TACATAAATCAGTTAATAAA+AGG - chr7_2:87507858-87507877 None:intergenic 15.0%
!!! TTATTAACTGATTTATGTAT+AGG + chr7_2:87507859-87507878 Msa1086670:intron 15.0%
!!! TAGATACAATTTTAAAATAC+TGG + chr7_2:87507995-87508014 Msa1086670:intron 15.0%
!! AAAATTTCTACAATAAGATT+AGG - chr7_2:87508255-87508274 None:intergenic 15.0%
!!! ACAAGAATATTTTTTTTTGT+GGG - chr7_2:87508720-87508739 None:intergenic 15.0%
!! AAAATTATACGAAAAGAAAA+AGG + chr7_2:87508939-87508958 Msa1086670:CDS 15.0%
!! TAAAAAGAAACAATTTGAAA+AGG + chr7_2:87509208-87509227 Msa1086670:CDS 15.0%
!!! AAAATTGTATCTAAAATGAC+TGG - chr7_2:87507988-87508007 None:intergenic 20.0%
!!! AAATTTTATAATTGGATCAG+TGG - chr7_2:87508096-87508115 None:intergenic 20.0%
!!! AAATGATTTTCCTAGAATAT+AGG - chr7_2:87508187-87508206 None:intergenic 20.0%
!!! ATCTTATTGTAGAAATTTTC+AGG + chr7_2:87508256-87508275 Msa1086670:intron 20.0%
!!! ACCTATTTTTTCTTTAATCT+CGG - chr7_2:87508673-87508692 None:intergenic 20.0%
!!! CACAAGAATATTTTTTTTTG+TGG - chr7_2:87508721-87508740 None:intergenic 20.0%
!! CACAAAAAAAAATATTCTTG+TGG + chr7_2:87508719-87508738 Msa1086670:CDS 20.0%
!! AAAAAAAATATTCTTGTGGT+AGG + chr7_2:87508723-87508742 Msa1086670:CDS 20.0%
!! TTAAAATATCCTATATACGT+AGG + chr7_2:87508828-87508847 Msa1086670:CDS 20.0%
!!! AAAATTGTATCTAAAATGAC+TGG - chr7_2:87507988-87508007 None:intergenic 20.0%
!!! AAATTTTATAATTGGATCAG+TGG - chr7_2:87508096-87508115 None:intergenic 20.0%
!!! AAATGATTTTCCTAGAATAT+AGG - chr7_2:87508187-87508206 None:intergenic 20.0%
!!! ATCTTATTGTAGAAATTTTC+AGG + chr7_2:87508256-87508275 Msa1086670:intron 20.0%
!!! ACCTATTTTTTCTTTAATCT+CGG - chr7_2:87508673-87508692 None:intergenic 20.0%
!!! CACAAGAATATTTTTTTTTG+TGG - chr7_2:87508721-87508740 None:intergenic 20.0%
!! CACAAAAAAAAATATTCTTG+TGG + chr7_2:87508719-87508738 Msa1086670:CDS 20.0%
!! AAAAAAAATATTCTTGTGGT+AGG + chr7_2:87508723-87508742 Msa1086670:CDS 20.0%
!! TTAAAATATCCTATATACGT+AGG + chr7_2:87508828-87508847 Msa1086670:CDS 20.0%
! ATATGTTTCCTTATTCTAAG+TGG + chr7_2:87507737-87507756 Msa1086670:CDS 25.0%
! TAGAATAACCACTTAGAATA+AGG - chr7_2:87507748-87507767 None:intergenic 25.0%
! TTCTAAGTGGTTATTCTATT+AGG + chr7_2:87507750-87507769 Msa1086670:CDS 25.0%
! TCTAAGTGGTTATTCTATTA+GGG + chr7_2:87507751-87507770 Msa1086670:CDS 25.0%
! AACTCATTATTCTTAACTCT+TGG + chr7_2:87507782-87507801 Msa1086670:CDS 25.0%
! ACTCATTATTCTTAACTCTT+GGG + chr7_2:87507783-87507802 Msa1086670:CDS 25.0%
! CAGAATGATCAAATTATATC+TGG + chr7_2:87507946-87507965 Msa1086670:intron 25.0%
! GAGATACACGATTTAAATAA+CGG - chr7_2:87508026-87508045 None:intergenic 25.0%
! TTGAGTAAATAGCAGAATAA+TGG + chr7_2:87508205-87508224 Msa1086670:intron 25.0%
!!! TAAATAGCAGAATAATGGAT+AGG + chr7_2:87508210-87508229 Msa1086670:intron 25.0%
!!! AAATAGCAGAATAATGGATA+GGG + chr7_2:87508211-87508230 Msa1086670:intron 25.0%
! TTTCTACAATAAGATTAGGT+AGG - chr7_2:87508251-87508270 None:intergenic 25.0%
!!! AAATTTTCAGGATGAATGAT+TGG + chr7_2:87508268-87508287 Msa1086670:intron 25.0%
!!! AAACTAGAAATGCTTTTTCT+TGG + chr7_2:87508298-87508317 Msa1086670:CDS 25.0%
!!! AAATGCTTTTTCTTGGATAA+AGG + chr7_2:87508305-87508324 Msa1086670:CDS 25.0%
! TATATAGATCATGAGCAATA+CGG - chr7_2:87508352-87508371 None:intergenic 25.0%
!!! TGTTTAACTTGCATATCATA+AGG - chr7_2:87508555-87508574 None:intergenic 25.0%
! TTCTTGCTAATGGTAAAAAA+GGG + chr7_2:87508577-87508596 Msa1086670:CDS 25.0%
!!! CCTATTTTTTCTTTAATCTC+GGG - chr7_2:87508672-87508691 None:intergenic 25.0%
! ATTATACGAAAAGAAAAAGG+TGG + chr7_2:87508942-87508961 Msa1086670:CDS 25.0%
!!! TATTTTGGCACAAATCTTTT+TGG + chr7_2:87509181-87509200 Msa1086670:CDS 25.0%
! ATATGTTTCCTTATTCTAAG+TGG + chr7_2:87507737-87507756 Msa1086670:CDS 25.0%
! TAGAATAACCACTTAGAATA+AGG - chr7_2:87507748-87507767 None:intergenic 25.0%
! TTCTAAGTGGTTATTCTATT+AGG + chr7_2:87507750-87507769 Msa1086670:CDS 25.0%
! TCTAAGTGGTTATTCTATTA+GGG + chr7_2:87507751-87507770 Msa1086670:CDS 25.0%
! AACTCATTATTCTTAACTCT+TGG + chr7_2:87507782-87507801 Msa1086670:CDS 25.0%
! ACTCATTATTCTTAACTCTT+GGG + chr7_2:87507783-87507802 Msa1086670:CDS 25.0%
! CAGAATGATCAAATTATATC+TGG + chr7_2:87507946-87507965 Msa1086670:intron 25.0%
! GAGATACACGATTTAAATAA+CGG - chr7_2:87508026-87508045 None:intergenic 25.0%
! TTGAGTAAATAGCAGAATAA+TGG + chr7_2:87508205-87508224 Msa1086670:intron 25.0%
!!! TAAATAGCAGAATAATGGAT+AGG + chr7_2:87508210-87508229 Msa1086670:intron 25.0%
!!! AAATAGCAGAATAATGGATA+GGG + chr7_2:87508211-87508230 Msa1086670:intron 25.0%
! TTTCTACAATAAGATTAGGT+AGG - chr7_2:87508251-87508270 None:intergenic 25.0%
!!! AAATTTTCAGGATGAATGAT+TGG + chr7_2:87508268-87508287 Msa1086670:intron 25.0%
!!! AAACTAGAAATGCTTTTTCT+TGG + chr7_2:87508298-87508317 Msa1086670:CDS 25.0%
!!! AAATGCTTTTTCTTGGATAA+AGG + chr7_2:87508305-87508324 Msa1086670:CDS 25.0%
! TATATAGATCATGAGCAATA+CGG - chr7_2:87508352-87508371 None:intergenic 25.0%
!!! TGTTTAACTTGCATATCATA+AGG - chr7_2:87508555-87508574 None:intergenic 25.0%
! TTCTTGCTAATGGTAAAAAA+GGG + chr7_2:87508577-87508596 Msa1086670:CDS 25.0%
!!! CCTATTTTTTCTTTAATCTC+GGG - chr7_2:87508672-87508691 None:intergenic 25.0%
! ATTATACGAAAAGAAAAAGG+TGG + chr7_2:87508942-87508961 Msa1086670:CDS 25.0%
!!! TATTTTGGCACAAATCTTTT+TGG + chr7_2:87509181-87509200 Msa1086670:CDS 25.0%
AATGCAAAATCGTATGGATA+CGG - chr7_2:87507703-87507722 None:intergenic 30.0%
TACAGAAATGCAAAATCGTA+TGG - chr7_2:87507709-87507728 None:intergenic 30.0%
! ATCTAAAATGACTGGAAAAG+TGG - chr7_2:87507980-87507999 None:intergenic 30.0%
TGATAAATCACTACAAGTGA+CGG - chr7_2:87508048-87508067 None:intergenic 30.0%
TCGTATTCTTCCTATATTCT+AGG + chr7_2:87508174-87508193 Msa1086670:intron 30.0%
AATAAGATTAGGTAGGTTAC+TGG - chr7_2:87508244-87508263 None:intergenic 30.0%
!! AAAAGCATTTCTAGTTTGCA+TGG - chr7_2:87508295-87508314 None:intergenic 30.0%
! ATGGGATATGCATTTGAAAT+GGG - chr7_2:87508387-87508406 None:intergenic 30.0%
AATGGGATATGCATTTGAAA+TGG - chr7_2:87508388-87508407 None:intergenic 30.0%
TAATAAGCCTGTAGATATTG+AGG + chr7_2:87508479-87508498 Msa1086670:CDS 30.0%
AACTGCTTCAAATACAGTAT+CGG - chr7_2:87508523-87508542 None:intergenic 30.0%
GTTAAACAAGTTCTTGCTAA+TGG + chr7_2:87508567-87508586 Msa1086670:CDS 30.0%
GTTCTTGCTAATGGTAAAAA+AGG + chr7_2:87508576-87508595 Msa1086670:CDS 30.0%
TCTTGCTAATGGTAAAAAAG+GGG + chr7_2:87508578-87508597 Msa1086670:CDS 30.0%
CCCGAGATTAAAGAAAAAAT+AGG + chr7_2:87508669-87508688 Msa1086670:CDS 30.0%
ATTTCACTATATTTCTTCCC+AGG - chr7_2:87508756-87508775 None:intergenic 30.0%
AAATATCCTATATACGTAGG+CGG + chr7_2:87508831-87508850 Msa1086670:CDS 30.0%
ACATTAGGATTACTCGTTAA+TGG - chr7_2:87509077-87509096 None:intergenic 30.0%
ATTAACGAGTAATCCTAATG+TGG + chr7_2:87509076-87509095 Msa1086670:CDS 30.0%
TTAACGAGTAATCCTAATGT+GGG + chr7_2:87509077-87509096 Msa1086670:CDS 30.0%
! CTTCTTGGCATCTATTATTT+TGG + chr7_2:87509166-87509185 Msa1086670:CDS 30.0%
AATGCAAAATCGTATGGATA+CGG - chr7_2:87507703-87507722 None:intergenic 30.0%
TACAGAAATGCAAAATCGTA+TGG - chr7_2:87507709-87507728 None:intergenic 30.0%
! ATCTAAAATGACTGGAAAAG+TGG - chr7_2:87507980-87507999 None:intergenic 30.0%
TGATAAATCACTACAAGTGA+CGG - chr7_2:87508048-87508067 None:intergenic 30.0%
TCGTATTCTTCCTATATTCT+AGG + chr7_2:87508174-87508193 Msa1086670:intron 30.0%
AATAAGATTAGGTAGGTTAC+TGG - chr7_2:87508244-87508263 None:intergenic 30.0%
!! AAAAGCATTTCTAGTTTGCA+TGG - chr7_2:87508295-87508314 None:intergenic 30.0%
! ATGGGATATGCATTTGAAAT+GGG - chr7_2:87508387-87508406 None:intergenic 30.0%
AATGGGATATGCATTTGAAA+TGG - chr7_2:87508388-87508407 None:intergenic 30.0%
TAATAAGCCTGTAGATATTG+AGG + chr7_2:87508479-87508498 Msa1086670:CDS 30.0%
AACTGCTTCAAATACAGTAT+CGG - chr7_2:87508523-87508542 None:intergenic 30.0%
GTTAAACAAGTTCTTGCTAA+TGG + chr7_2:87508567-87508586 Msa1086670:CDS 30.0%
GTTCTTGCTAATGGTAAAAA+AGG + chr7_2:87508576-87508595 Msa1086670:CDS 30.0%
TCTTGCTAATGGTAAAAAAG+GGG + chr7_2:87508578-87508597 Msa1086670:CDS 30.0%
CCCGAGATTAAAGAAAAAAT+AGG + chr7_2:87508669-87508688 Msa1086670:CDS 30.0%
ATTTCACTATATTTCTTCCC+AGG - chr7_2:87508756-87508775 None:intergenic 30.0%
AAATATCCTATATACGTAGG+CGG + chr7_2:87508831-87508850 Msa1086670:CDS 30.0%
ACATTAGGATTACTCGTTAA+TGG - chr7_2:87509077-87509096 None:intergenic 30.0%
ATTAACGAGTAATCCTAATG+TGG + chr7_2:87509076-87509095 Msa1086670:CDS 30.0%
TTAACGAGTAATCCTAATGT+GGG + chr7_2:87509077-87509096 Msa1086670:CDS 30.0%
! CTTCTTGGCATCTATTATTT+TGG + chr7_2:87509166-87509185 Msa1086670:CDS 30.0%
ATAGGATTCCATTCAACTCA+TGG + chr7_2:87507877-87507896 Msa1086670:intron 35.0%
ATTCCATTCAACTCATGGTT+GGG + chr7_2:87507882-87507901 Msa1086670:intron 35.0%
ATGGTTGGGAACTAATGATT+GGG + chr7_2:87507896-87507915 Msa1086670:intron 35.0%
! GGGTCTGTCTATAAAGATTT+TGG + chr7_2:87507916-87507935 Msa1086670:intron 35.0%
!! ATATCCCATTTTTGCTCAAC+AGG + chr7_2:87508398-87508417 Msa1086670:CDS 35.0%
!! TATCCCATTTTTGCTCAACA+GGG + chr7_2:87508399-87508418 Msa1086670:CDS 35.0%
TAACCCTGTTGAGCAAAAAT+GGG - chr7_2:87508405-87508424 None:intergenic 35.0%
ATAACCCTGTTGAGCAAAAA+TGG - chr7_2:87508406-87508425 None:intergenic 35.0%
CTACAGGCTTATTAGCTAAA+TGG - chr7_2:87508473-87508492 None:intergenic 35.0%
ACTGCTTCAAATACAGTATC+GGG - chr7_2:87508522-87508541 None:intergenic 35.0%
!! AAAAAAGGGGCTTTGAATGT+AGG + chr7_2:87508591-87508610 Msa1086670:CDS 35.0%
!!! TGCTGTTCTTATTTTACCAG+AGG + chr7_2:87508614-87508633 Msa1086670:CDS 35.0%
!!! GCTGTTCTTATTTTACCAGA+GGG + chr7_2:87508615-87508634 Msa1086670:CDS 35.0%
!!! TTTACCAGAGGGTTTTGAAT+TGG + chr7_2:87508626-87508645 Msa1086670:CDS 35.0%
ACTATATTTCTTCCCAGGAA+CGG - chr7_2:87508751-87508770 None:intergenic 35.0%
ATCTGGAGAAAGAATAGGAA+AGG - chr7_2:87508781-87508800 None:intergenic 35.0%
AATATCCTATATACGTAGGC+GGG + chr7_2:87508832-87508851 Msa1086670:CDS 35.0%
GTTTATAATGCTACAGCAAC+AGG + chr7_2:87508906-87508925 Msa1086670:CDS 35.0%
TGGATACGAAATAACGATAG+TGG + chr7_2:87508962-87508981 Msa1086670:CDS 35.0%
!! AATAACGATAGTGGATGCAT+CGG + chr7_2:87508971-87508990 Msa1086670:CDS 35.0%
ATAGGATTCCATTCAACTCA+TGG + chr7_2:87507877-87507896 Msa1086670:intron 35.0%
ATTCCATTCAACTCATGGTT+GGG + chr7_2:87507882-87507901 Msa1086670:intron 35.0%
ATGGTTGGGAACTAATGATT+GGG + chr7_2:87507896-87507915 Msa1086670:intron 35.0%
! GGGTCTGTCTATAAAGATTT+TGG + chr7_2:87507916-87507935 Msa1086670:intron 35.0%
!! ATATCCCATTTTTGCTCAAC+AGG + chr7_2:87508398-87508417 Msa1086670:CDS 35.0%
!! TATCCCATTTTTGCTCAACA+GGG + chr7_2:87508399-87508418 Msa1086670:CDS 35.0%
TAACCCTGTTGAGCAAAAAT+GGG - chr7_2:87508405-87508424 None:intergenic 35.0%
ATAACCCTGTTGAGCAAAAA+TGG - chr7_2:87508406-87508425 None:intergenic 35.0%
CTACAGGCTTATTAGCTAAA+TGG - chr7_2:87508473-87508492 None:intergenic 35.0%
ACTGCTTCAAATACAGTATC+GGG - chr7_2:87508522-87508541 None:intergenic 35.0%
!! AAAAAAGGGGCTTTGAATGT+AGG + chr7_2:87508591-87508610 Msa1086670:CDS 35.0%
!!! TGCTGTTCTTATTTTACCAG+AGG + chr7_2:87508614-87508633 Msa1086670:CDS 35.0%
!!! GCTGTTCTTATTTTACCAGA+GGG + chr7_2:87508615-87508634 Msa1086670:CDS 35.0%
!!! TTTACCAGAGGGTTTTGAAT+TGG + chr7_2:87508626-87508645 Msa1086670:CDS 35.0%
ACTATATTTCTTCCCAGGAA+CGG - chr7_2:87508751-87508770 None:intergenic 35.0%
ATCTGGAGAAAGAATAGGAA+AGG - chr7_2:87508781-87508800 None:intergenic 35.0%
AATATCCTATATACGTAGGC+GGG + chr7_2:87508832-87508851 Msa1086670:CDS 35.0%
GTTTATAATGCTACAGCAAC+AGG + chr7_2:87508906-87508925 Msa1086670:CDS 35.0%
TGGATACGAAATAACGATAG+TGG + chr7_2:87508962-87508981 Msa1086670:CDS 35.0%
!! AATAACGATAGTGGATGCAT+CGG + chr7_2:87508971-87508990 Msa1086670:CDS 35.0%
GGTTGTTCGTCTCTATCAAT+TGG - chr7_2:87507676-87507695 None:intergenic 40.0%
AAATCGTATGGATACGGTCT+TGG - chr7_2:87507697-87507716 None:intergenic 40.0%
GATTCCATTCAACTCATGGT+TGG + chr7_2:87507881-87507900 Msa1086670:intron 40.0%
CATGGTTGGGAACTAATGAT+TGG + chr7_2:87507895-87507914 Msa1086670:intron 40.0%
TGAGCAATACGGAAATGGAT+CGG - chr7_2:87508341-87508360 None:intergenic 40.0%
GATCATGAGCAATACGGAAA+TGG - chr7_2:87508346-87508365 None:intergenic 40.0%
TGTGGAACCTCAATATCTAC+AGG - chr7_2:87508489-87508508 None:intergenic 40.0%
AGATATTGAGGTTCCACAAG+CGG + chr7_2:87508491-87508510 Msa1086670:CDS 40.0%
TATATTTCTTCCCAGGAACG+GGG - chr7_2:87508749-87508768 None:intergenic 40.0%
CTATATTTCTTCCCAGGAAC+GGG - chr7_2:87508750-87508769 None:intergenic 40.0%
TGAACATCTCTCTTAGTAGC+GGG - chr7_2:87508804-87508823 None:intergenic 40.0%
GTGAACATCTCTCTTAGTAG+CGG - chr7_2:87508805-87508824 None:intergenic 40.0%
TATATACGTAGGCGGGAATA+GGG + chr7_2:87508839-87508858 Msa1086670:CDS 40.0%
ATTATTACTCTTGCTCCCGT+CGG - chr7_2:87508883-87508902 None:intergenic 40.0%
GTGATTGATATTATACCGCC+AGG + chr7_2:87509005-87509024 Msa1086670:CDS 40.0%
! ACCAGAACTTCTTGTTTCAG+AGG + chr7_2:87509028-87509047 Msa1086670:CDS 40.0%
! CCAGAACTTCTTGTTTCAGA+GGG + chr7_2:87509029-87509048 Msa1086670:CDS 40.0%
! AATCCTAATGTGGGTGGATT+TGG + chr7_2:87509086-87509105 Msa1086670:CDS 40.0%
AACAGACCTTGTACACGTAA+CGG - chr7_2:87509143-87509162 None:intergenic 40.0%
ACAAGGTCTGTTGTTCTTCT+TGG + chr7_2:87509151-87509170 Msa1086670:CDS 40.0%
GGTTGTTCGTCTCTATCAAT+TGG - chr7_2:87507676-87507695 None:intergenic 40.0%
AAATCGTATGGATACGGTCT+TGG - chr7_2:87507697-87507716 None:intergenic 40.0%
GATTCCATTCAACTCATGGT+TGG + chr7_2:87507881-87507900 Msa1086670:intron 40.0%
CATGGTTGGGAACTAATGAT+TGG + chr7_2:87507895-87507914 Msa1086670:intron 40.0%
TGAGCAATACGGAAATGGAT+CGG - chr7_2:87508341-87508360 None:intergenic 40.0%
GATCATGAGCAATACGGAAA+TGG - chr7_2:87508346-87508365 None:intergenic 40.0%
TGTGGAACCTCAATATCTAC+AGG - chr7_2:87508489-87508508 None:intergenic 40.0%
AGATATTGAGGTTCCACAAG+CGG + chr7_2:87508491-87508510 Msa1086670:CDS 40.0%
TATATTTCTTCCCAGGAACG+GGG - chr7_2:87508749-87508768 None:intergenic 40.0%
CTATATTTCTTCCCAGGAAC+GGG - chr7_2:87508750-87508769 None:intergenic 40.0%
TGAACATCTCTCTTAGTAGC+GGG - chr7_2:87508804-87508823 None:intergenic 40.0%
GTGAACATCTCTCTTAGTAG+CGG - chr7_2:87508805-87508824 None:intergenic 40.0%
TATATACGTAGGCGGGAATA+GGG + chr7_2:87508839-87508858 Msa1086670:CDS 40.0%
ATTATTACTCTTGCTCCCGT+CGG - chr7_2:87508883-87508902 None:intergenic 40.0%
GTGATTGATATTATACCGCC+AGG + chr7_2:87509005-87509024 Msa1086670:CDS 40.0%
! ACCAGAACTTCTTGTTTCAG+AGG + chr7_2:87509028-87509047 Msa1086670:CDS 40.0%
! CCAGAACTTCTTGTTTCAGA+GGG + chr7_2:87509029-87509048 Msa1086670:CDS 40.0%
! AATCCTAATGTGGGTGGATT+TGG + chr7_2:87509086-87509105 Msa1086670:CDS 40.0%
AACAGACCTTGTACACGTAA+CGG - chr7_2:87509143-87509162 None:intergenic 40.0%
ACAAGGTCTGTTGTTCTTCT+TGG + chr7_2:87509151-87509170 Msa1086670:CDS 40.0%
! GTTCCCAACCATGAGTTGAA+TGG - chr7_2:87507888-87507907 None:intergenic 45.0%
GAGCAATACGGAAATGGATC+GGG - chr7_2:87508340-87508359 None:intergenic 45.0%
GAAAATCCGAGAGAAGCTAC+CGG + chr7_2:87508426-87508445 Msa1086670:CDS 45.0%
AAAATCCGAGAGAAGCTACC+GGG + chr7_2:87508427-87508446 Msa1086670:CDS 45.0%
ATTAGCACATACAATCCGCC+CGG - chr7_2:87508448-87508467 None:intergenic 45.0%
CTATTCCCGCCTACGTATAT+AGG - chr7_2:87508840-87508859 None:intergenic 45.0%
CTATATACGTAGGCGGGAAT+AGG + chr7_2:87508838-87508857 Msa1086670:CDS 45.0%
ATATACGTAGGCGGGAATAG+GGG + chr7_2:87508840-87508859 Msa1086670:CDS 45.0%
TTATTACTCTTGCTCCCGTC+GGG - chr7_2:87508882-87508901 None:intergenic 45.0%
! GAAACAAGAAGTTCTGGTCC+TGG - chr7_2:87509026-87509045 None:intergenic 45.0%
!! CCCTCTGAAACAAGAAGTTC+TGG - chr7_2:87509032-87509051 None:intergenic 45.0%
ACGAGTAATCCTAATGTGGG+TGG + chr7_2:87509080-87509099 Msa1086670:CDS 45.0%
TGACCAAATCCACCCACATT+AGG - chr7_2:87509092-87509111 None:intergenic 45.0%
! TAATGTGGGTGGATTTGGTC+AGG + chr7_2:87509091-87509110 Msa1086670:CDS 45.0%
! AATGTGGGTGGATTTGGTCA+GGG + chr7_2:87509092-87509111 Msa1086670:CDS 45.0%
CAAGATCCGTTACGTGTACA+AGG + chr7_2:87509134-87509153 Msa1086670:CDS 45.0%
! GTTCCCAACCATGAGTTGAA+TGG - chr7_2:87507888-87507907 None:intergenic 45.0%
GAGCAATACGGAAATGGATC+GGG - chr7_2:87508340-87508359 None:intergenic 45.0%
GAAAATCCGAGAGAAGCTAC+CGG + chr7_2:87508426-87508445 Msa1086670:CDS 45.0%
AAAATCCGAGAGAAGCTACC+GGG + chr7_2:87508427-87508446 Msa1086670:CDS 45.0%
ATTAGCACATACAATCCGCC+CGG - chr7_2:87508448-87508467 None:intergenic 45.0%
CTATTCCCGCCTACGTATAT+AGG - chr7_2:87508840-87508859 None:intergenic 45.0%
CTATATACGTAGGCGGGAAT+AGG + chr7_2:87508838-87508857 Msa1086670:CDS 45.0%
ATATACGTAGGCGGGAATAG+GGG + chr7_2:87508840-87508859 Msa1086670:CDS 45.0%
TTATTACTCTTGCTCCCGTC+GGG - chr7_2:87508882-87508901 None:intergenic 45.0%
! GAAACAAGAAGTTCTGGTCC+TGG - chr7_2:87509026-87509045 None:intergenic 45.0%
!! CCCTCTGAAACAAGAAGTTC+TGG - chr7_2:87509032-87509051 None:intergenic 45.0%
ACGAGTAATCCTAATGTGGG+TGG + chr7_2:87509080-87509099 Msa1086670:CDS 45.0%
TGACCAAATCCACCCACATT+AGG - chr7_2:87509092-87509111 None:intergenic 45.0%
! TAATGTGGGTGGATTTGGTC+AGG + chr7_2:87509091-87509110 Msa1086670:CDS 45.0%
! AATGTGGGTGGATTTGGTCA+GGG + chr7_2:87509092-87509111 Msa1086670:CDS 45.0%
CAAGATCCGTTACGTGTACA+AGG + chr7_2:87509134-87509153 Msa1086670:CDS 45.0%
!!! AAAAAAACAAATTTTATAAT+TGG - chr7_2:87508104-87508123 None:intergenic 5.0%
!!! AAAAAAACAAATTTTATAAT+TGG - chr7_2:87508104-87508123 None:intergenic 5.0%
ATCTCGGGCGAAATACGATC+AGG - chr7_2:87508657-87508676 None:intergenic 50.0%
GCGGGATCTGGAGAAAGAAT+AGG - chr7_2:87508786-87508805 None:intergenic 50.0%
! TCTCTCTTAGTAGCGGGATC+TGG - chr7_2:87508798-87508817 None:intergenic 50.0%
AGGGGTCAGATTTATCCCGA+CGG + chr7_2:87508864-87508883 Msa1086670:CDS 50.0%
!! ACGATAGTGGATGCATCGGA+TGG + chr7_2:87508975-87508994 Msa1086670:CDS 50.0%
! ACAAGAAGTTCTGGTCCTGG+CGG - chr7_2:87509023-87509042 None:intergenic 50.0%
! ATGTGGGTGGATTTGGTCAG+GGG + chr7_2:87509093-87509112 Msa1086670:CDS 50.0%
ATCTCGGGCGAAATACGATC+AGG - chr7_2:87508657-87508676 None:intergenic 50.0%
GCGGGATCTGGAGAAAGAAT+AGG - chr7_2:87508786-87508805 None:intergenic 50.0%
! TCTCTCTTAGTAGCGGGATC+TGG - chr7_2:87508798-87508817 None:intergenic 50.0%
AGGGGTCAGATTTATCCCGA+CGG + chr7_2:87508864-87508883 Msa1086670:CDS 50.0%
!! ACGATAGTGGATGCATCGGA+TGG + chr7_2:87508975-87508994 Msa1086670:CDS 50.0%
! ACAAGAAGTTCTGGTCCTGG+CGG - chr7_2:87509023-87509042 None:intergenic 50.0%
! ATGTGGGTGGATTTGGTCAG+GGG + chr7_2:87509093-87509112 Msa1086670:CDS 50.0%
!! GTATCGGGAAGTACCGCTTG+TGG - chr7_2:87508507-87508526 None:intergenic 55.0%
GGGGCCAATTCAAAACCCTC+TGG - chr7_2:87508633-87508652 None:intergenic 55.0%
GGGCGAAATACGATCAGGAG+GGG - chr7_2:87508652-87508671 None:intergenic 55.0%
CGGGCGAAATACGATCAGGA+GGG - chr7_2:87508653-87508672 None:intergenic 55.0%
TCGGGCGAAATACGATCAGG+AGG - chr7_2:87508654-87508673 None:intergenic 55.0%
GGGGTCAGATTTATCCCGAC+GGG + chr7_2:87508865-87508884 Msa1086670:CDS 55.0%
! TGTGGGTGGATTTGGTCAGG+GGG + chr7_2:87509094-87509113 Msa1086670:CDS 55.0%
!! GTATCGGGAAGTACCGCTTG+TGG - chr7_2:87508507-87508526 None:intergenic 55.0%
GGGGCCAATTCAAAACCCTC+TGG - chr7_2:87508633-87508652 None:intergenic 55.0%
GGGCGAAATACGATCAGGAG+GGG - chr7_2:87508652-87508671 None:intergenic 55.0%
CGGGCGAAATACGATCAGGA+GGG - chr7_2:87508653-87508672 None:intergenic 55.0%
TCGGGCGAAATACGATCAGG+AGG - chr7_2:87508654-87508673 None:intergenic 55.0%
GGGGTCAGATTTATCCCGAC+GGG + chr7_2:87508865-87508884 Msa1086670:CDS 55.0%
! TGTGGGTGGATTTGGTCAGG+GGG + chr7_2:87509094-87509113 Msa1086670:CDS 55.0%
ATCCGAGAGAAGCTACCGGG+CGG + chr7_2:87508430-87508449 Msa1086670:CDS 60.0%
ATCCGCCCGGTAGCTTCTCT+CGG - chr7_2:87508435-87508454 None:intergenic 60.0%
TTGTGGTAGGCCCCGTTCCT+GGG + chr7_2:87508736-87508755 Msa1086670:CDS 60.0%
ACGTAGGCGGGAATAGGGGA+AGG + chr7_2:87508844-87508863 Msa1086670:CDS 60.0%
CGTAGGCGGGAATAGGGGAA+GGG + chr7_2:87508845-87508864 Msa1086670:CDS 60.0%
GTAGGCGGGAATAGGGGAAG+GGG + chr7_2:87508846-87508865 Msa1086670:CDS 60.0%
ATCCGAGAGAAGCTACCGGG+CGG + chr7_2:87508430-87508449 Msa1086670:CDS 60.0%
ATCCGCCCGGTAGCTTCTCT+CGG - chr7_2:87508435-87508454 None:intergenic 60.0%
TTGTGGTAGGCCCCGTTCCT+GGG + chr7_2:87508736-87508755 Msa1086670:CDS 60.0%
ACGTAGGCGGGAATAGGGGA+AGG + chr7_2:87508844-87508863 Msa1086670:CDS 60.0%
CGTAGGCGGGAATAGGGGAA+GGG + chr7_2:87508845-87508864 Msa1086670:CDS 60.0%
GTAGGCGGGAATAGGGGAAG+GGG + chr7_2:87508846-87508865 Msa1086670:CDS 60.0%
CTTGTGGTAGGCCCCGTTCC+TGG + chr7_2:87508735-87508754 Msa1086670:CDS 65.0%
CTTGTGGTAGGCCCCGTTCC+TGG + chr7_2:87508735-87508754 Msa1086670:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 87507650 87509256 87507650 ID=Msa1086670;Name=Msa1086670
chr7_2 mRNA 87507650 87509256 87507650 ID=Msa1086670-mRNA-1;Parent=Msa1086670;Name=Msa1086670-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|1|0|0|2|0|377
chr7_2 exon 87507650 87507804 87507650 ID=Msa1086670-mRNA-1:exon:23875;Parent=Msa1086670-mRNA-1
chr7_2 exon 87508278 87509256 87508278 ID=Msa1086670-mRNA-1:exon:23876;Parent=Msa1086670-mRNA-1
chr7_2 CDS 87507650 87507804 87507650 ID=Msa1086670-mRNA-1:cds;Parent=Msa1086670-mRNA-1
chr7_2 CDS 87508278 87509256 87508278 ID=Msa1086670-mRNA-1:cds;Parent=Msa1086670-mRNA-1
Gene Sequence

>Msa1086670

ATGGAAATCTACAAAGAAAGCATCCAATTGATAGAGACGAACAACCAAGACCGTATCCATACGATTTTGCATTTCTGTACAAATATAATATGTTTCCTTATTCTAAGTGGTTATTCTATTAGGGTAATCAAGAACTCATTATTCTTAACTCTTGGGATGAATGATTGGACCATGCAAACTAGAAATGCTTTTTCTTGGATAAAGGAAGAGATTACCCGATCCATTTCCGTATTGCTCATGATCTATATAATAACTCGAGCACCCATTTCAAATGCATATCCCATTTTTGCTCAACAGGGTTATGAAAATCCGAGAGAAGCTACCGGGCGGATTGTATGTGCTAATTGCCATTTAGCTAATAAGCCTGTAGATATTGAGGTTCCACAAGCGGTACTTCCCGATACTGTATTTGAAGCAGTTGTTCGAATTCCTTATGATATGCAAGTTAAACAAGTTCTTGCTAATGGTAAAAAAGGGGCTTTGAATGTAGGTGCTGTTCTTATTTTACCAGAGGGTTTTGAATTGGCCCCTCCTGATCGTATTTCGCCCGAGATTAAAGAAAAAATAGGTAATTTGTCTTTTCAAAGCTATCGTCCCACAAAAAAAAATATTCTTGTGGTAGGCCCCGTTCCTGGGAAGAAATATAGTGAAATTACCTTTCCTATTCTTTCTCCAGATCCCGCTACTAAGAGAGATGTTCACTTCTTAAAATATCCTATATACGTAGGCGGGAATAGGGGAAGGGGTCAGATTTATCCCGACGGGAGCAAGAGTAATAATAATGTTTATAATGCTACAGCAACAGGTATAGTAAATAAAATTATACGAAAAGAAAAAGGTGGATACGAAATAACGATAGTGGATGCATCGGATGGACGTGAAGTGATTGATATTATACCGCCAGGACCAGAACTTCTTGTTTCAGAGGGTGAATCTATCAAACTTGATCAACCATTAACGAGTAATCCTAATGTGGGTGGATTTGGTCAGGGGGATGCAGAAATAGTGCTTCAAGATCCGTTACGTGTACAAGGTCTGTTGTTCTTCTTGGCATCTATTATTTTGGCACAAATCTTTTTGGTTCTTAAAAAGAAACAATTTGAAAAGGTTCAATTGTCCGAAATGAATTTTTAG

Protein sequence

>Msa1086670

MEIYKESIQLIETNNQDRIHTILHFCTNIICFLILSGYSIRVIKNSLFLTLGMNDWTMQTRNAFSWIKEEITRSISVLLMIYIITRAPISNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQVKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEIKEKIGNLSFQSYRPTKKNILVVGPVPGKKYSEITFPILSPDPATKRDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATATGIVNKIIRKEKGGYEITIVDASDGREVIDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFLASIILAQIFLVLKKKQFEKVQLSEMNF*