Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0535400 | KEH29076.1 | 98.874 | 444 | 5 | 0 | 1 | 444 | 80 | 523 | 0.0 | 906 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0535400 | sp|Q94B55|XB31_ARATH | 59.695 | 459 | 160 | 7 | 1 | 444 | 1 | 449 | 0.0 | 519 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0535400 | A0A072UHZ3 | 98.874 | 444 | 5 | 0 | 1 | 444 | 80 | 523 | 0.0 | 906 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009640 | Msa0535400 | 0.826110 | 3.246683e-54 | -8.615850e-47 |
| Msa0034590 | Msa0535400 | -0.800136 | 1.660215e-48 | -8.615850e-47 |
| Msa0052780 | Msa0535400 | 0.840324 | 9.312835e-58 | -8.615850e-47 |
| Msa0070120 | Msa0535400 | 0.810822 | 9.519465e-51 | -8.615850e-47 |
| Msa0078700 | Msa0535400 | 0.813776 | 2.157127e-51 | -8.615850e-47 |
| Msa0090870 | Msa0535400 | 0.810666 | 1.028999e-50 | -8.615850e-47 |
| Msa0095940 | Msa0535400 | 0.838765 | 2.368222e-57 | -8.615850e-47 |
| Msa0097570 | Msa0535400 | 0.843803 | 1.119436e-58 | -8.615850e-47 |
| Msa0111730 | Msa0535400 | 0.802285 | 6.031113e-49 | -8.615850e-47 |
| Msa0113370 | Msa0535400 | -0.802399 | 5.713719e-49 | -8.615850e-47 |
| Msa0126000 | Msa0535400 | -0.812182 | 4.821233e-51 | -8.615850e-47 |
| Msa0129770 | Msa0535400 | 0.801882 | 7.301325e-49 | -8.615850e-47 |
| Msa0129820 | Msa0535400 | -0.817886 | 2.613219e-52 | -8.615850e-47 |
| Msa0139680 | Msa0535400 | 0.807039 | 6.140063e-50 | -8.615850e-47 |
| Msa0145050 | Msa0535400 | 0.801578 | 8.428419e-49 | -8.615850e-47 |
| Msa0145430 | Msa0535400 | 0.807838 | 4.155978e-50 | -8.615850e-47 |
| Msa0150620 | Msa0535400 | 0.806657 | 7.393767e-50 | -8.615850e-47 |
| Msa0151660 | Msa0535400 | 0.802311 | 5.958010e-49 | -8.615850e-47 |
| Msa0158890 | Msa0535400 | -0.809605 | 1.741882e-50 | -8.615850e-47 |
| Msa0164490 | Msa0535400 | 0.804480 | 2.117406e-49 | -8.615850e-47 |
| Msa0183390 | Msa0535400 | 0.812955 | 3.266644e-51 | -8.615850e-47 |
| Msa0226260 | Msa0535400 | 0.800010 | 1.761434e-48 | -8.615850e-47 |
| Msa0234150 | Msa0535400 | 0.805537 | 1.272365e-49 | -8.615850e-47 |
| Msa0383900 | Msa0535400 | 0.814419 | 1.555991e-51 | -8.615850e-47 |
| Msa0398390 | Msa0535400 | 0.811386 | 7.185650e-51 | -8.615850e-47 |
| Msa0401860 | Msa0535400 | -0.804887 | 1.740530e-49 | -8.615850e-47 |
| Msa0405470 | Msa0535400 | -0.801164 | 1.024293e-48 | -8.615850e-47 |
| Msa0405550 | Msa0535400 | -0.801823 | 7.506369e-49 | -8.615850e-47 |
| Msa0415100 | Msa0535400 | 0.817738 | 2.821461e-52 | -8.615850e-47 |
| Msa0434400 | Msa0535400 | 0.801223 | 9.962194e-49 | -8.615850e-47 |
| Msa0442860 | Msa0535400 | 0.816527 | 5.282135e-52 | -8.615850e-47 |
| Msa0444770 | Msa0535400 | -0.810715 | 1.004279e-50 | -8.615850e-47 |
| Msa0459860 | Msa0535400 | 0.821541 | 3.821848e-53 | -8.615850e-47 |
| Msa0473000 | Msa0535400 | 0.828493 | 8.717177e-55 | -8.615850e-47 |
| Msa0253230 | Msa0535400 | -0.803602 | 3.224158e-49 | -8.615850e-47 |
| Msa0265650 | Msa0535400 | 0.808259 | 3.382191e-50 | -8.615850e-47 |
| Msa0275390 | Msa0535400 | 0.805307 | 1.422171e-49 | -8.615850e-47 |
| Msa0287480 | Msa0535400 | 0.813555 | 2.412262e-51 | -8.615850e-47 |
| Msa0293720 | Msa0535400 | 0.812138 | 4.929450e-51 | -8.615850e-47 |
| Msa0294200 | Msa0535400 | 0.802936 | 4.427772e-49 | -8.615850e-47 |
| Msa0298000 | Msa0535400 | 0.804231 | 2.385993e-49 | -8.615850e-47 |
| Msa0302300 | Msa0535400 | -0.804374 | 2.227027e-49 | -8.615850e-47 |
| Msa0319680 | Msa0535400 | 0.808770 | 2.630079e-50 | -8.615850e-47 |
| Msa0320170 | Msa0535400 | 0.825919 | 3.604406e-54 | -8.615850e-47 |
| Msa0339660 | Msa0535400 | -0.800559 | 1.361855e-48 | -8.615850e-47 |
| Msa0345050 | Msa0535400 | 0.835433 | 1.682830e-56 | -8.615850e-47 |
| Msa0345890 | Msa0535400 | 0.820831 | 5.572241e-53 | -8.615850e-47 |
| Msa0483970 | Msa0535400 | -0.805600 | 1.234239e-49 | -8.615850e-47 |
| Msa0490320 | Msa0535400 | 0.803448 | 3.469830e-49 | -8.615850e-47 |
| Msa0517200 | Msa0535400 | 0.825613 | 4.260542e-54 | -8.615850e-47 |
| Msa0529110 | Msa0535400 | 0.807388 | 5.179755e-50 | -8.615850e-47 |
| Msa0530730 | Msa0535400 | 0.827395 | 1.602315e-54 | -8.615850e-47 |
| Msa0531050 | Msa0535400 | 0.857723 | 1.343830e-62 | -8.615850e-47 |
| Msa0532230 | Msa0535400 | 0.815975 | 7.016729e-52 | -8.615850e-47 |
| Msa0534610 | Msa0535400 | 0.822963 | 1.787511e-53 | -8.615850e-47 |
| Msa0535400 | Msa0548410 | 0.805879 | 1.078391e-49 | -8.615850e-47 |
| Msa0535400 | Msa0548420 | 0.816468 | 5.445343e-52 | -8.615850e-47 |
| Msa0535400 | Msa0565180 | 0.814510 | 1.485424e-51 | -8.615850e-47 |
| Msa0535400 | Msa0565370 | -0.806466 | 8.115523e-50 | -8.615850e-47 |
| Msa0535400 | Msa0581350 | 0.812456 | 4.201828e-51 | -8.615850e-47 |
| Msa0535400 | Msa0588040 | 0.820777 | 5.732152e-53 | -8.615850e-47 |
| Msa0535400 | Msa0590810 | 0.836143 | 1.111839e-56 | -8.615850e-47 |
| Msa0535400 | Msa0595270 | 0.810087 | 1.371897e-50 | -8.615850e-47 |
| Msa0535400 | Msa0603300 | 0.848991 | 4.306113e-60 | -8.615850e-47 |
| Msa0535400 | Msa0603310 | 0.854991 | 8.508156e-62 | -8.615850e-47 |
| Msa0535400 | Msa0611060 | 0.840334 | 9.258225e-58 | -8.615850e-47 |
| Msa0535400 | Msa0613300 | 0.808511 | 2.988081e-50 | -8.615850e-47 |
| Msa0535400 | Msa0628200 | 0.815055 | 1.124573e-51 | -8.615850e-47 |
| Msa0535400 | Msa0631130 | 0.832007 | 1.208509e-55 | -8.615850e-47 |
| Msa0535400 | Msa0637590 | 0.822923 | 1.826528e-53 | -8.615850e-47 |
| Msa0535400 | Msa0644340 | 0.832871 | 7.379815e-56 | -8.615850e-47 |
| Msa0535400 | Msa0658190 | 0.821173 | 4.646662e-53 | -8.615850e-47 |
| Msa0535400 | Msa0667030 | 0.820476 | 6.721808e-53 | -8.615850e-47 |
| Msa0535400 | Msa0669350 | 0.815646 | 8.309069e-52 | -8.615850e-47 |
| Msa0535400 | Msa0682110 | 0.818235 | 2.178882e-52 | -8.615850e-47 |
| Msa0535400 | Msa0682160 | 0.819281 | 1.261126e-52 | -8.615850e-47 |
| Msa0535400 | Msa0684130 | 0.816672 | 4.900477e-52 | -8.615850e-47 |
| Msa0535400 | Msa0694140 | 0.803895 | 2.802156e-49 | -8.615850e-47 |
| Msa0535400 | Msa0703030 | 0.820939 | 5.262530e-53 | -8.615850e-47 |
| Msa0535400 | Msa0709140 | 0.805297 | 1.428821e-49 | -8.615850e-47 |
| Msa0535400 | Msa0719900 | -0.811099 | 8.292549e-51 | -8.615850e-47 |
| Msa0535400 | Msa0725580 | 0.804937 | 1.699809e-49 | -8.615850e-47 |
| Msa0535400 | Msa0736560 | 0.802938 | 4.423332e-49 | -8.615850e-47 |
| Msa0535400 | Msa0744640 | 0.852768 | 3.717094e-61 | -8.615850e-47 |
| Msa0535400 | Msa0744710 | 0.811680 | 6.202968e-51 | -8.615850e-47 |
| Msa0535400 | Msa0766170 | 0.807203 | 5.668859e-50 | -8.615850e-47 |
| Msa0535400 | Msa0826240 | 0.808474 | 3.042751e-50 | -8.615850e-47 |
| Msa0535400 | Msa0829990 | 0.833648 | 4.725567e-56 | -8.615850e-47 |
| Msa0535400 | Msa0833270 | 0.832760 | 7.864259e-56 | -8.615850e-47 |
| Msa0535400 | Msa0841730 | 0.854321 | 1.330989e-61 | -8.615850e-47 |
| Msa0535400 | Msa0845670 | 0.802302 | 5.983321e-49 | -8.615850e-47 |
| Msa0535400 | Msa0870510 | 0.806982 | 6.313121e-50 | -8.615850e-47 |
| Msa0535400 | Msa0873910 | 0.830883 | 2.284969e-55 | -8.615850e-47 |
| Msa0535400 | Msa0882480 | -0.810195 | 1.300597e-50 | -8.615850e-47 |
| Msa0535400 | Msa0905570 | 0.823559 | 1.297707e-53 | -8.615850e-47 |
| Msa0535400 | Msa0906660 | 0.836973 | 6.836440e-57 | -8.615850e-47 |
| Msa0535400 | Msa0907880 | 0.811971 | 5.359493e-51 | -8.615850e-47 |
| Msa0535400 | Msa0908260 | -0.804333 | 2.271465e-49 | -8.615850e-47 |
| Msa0535400 | Msa0908690 | -0.803345 | 3.644795e-49 | -8.615850e-47 |
| Msa0535400 | Msa0925940 | 0.828717 | 7.698074e-55 | -8.615850e-47 |
| Msa0535400 | Msa0940910 | 0.822218 | 2.665024e-53 | -8.615850e-47 |
| Msa0535400 | Msa0964020 | 0.840802 | 6.981267e-58 | -8.615850e-47 |
| Msa0535400 | Msa0966580 | 0.835537 | 1.584072e-56 | -8.615850e-47 |
| Msa0535400 | Msa0966590 | 0.804440 | 2.157826e-49 | -8.615850e-47 |
| Msa0535400 | Msa0974710 | 0.801995 | 6.919202e-49 | -8.615850e-47 |
| Msa0535400 | Msa0975960 | 0.811469 | 6.893206e-51 | -8.615850e-47 |
| Msa0535400 | Msa1007900 | 0.818157 | 2.269454e-52 | -8.615850e-47 |
| Msa0535400 | Msa1008370 | 0.815629 | 8.382693e-52 | -8.615850e-47 |
| Msa0535400 | Msa1019420 | 0.801970 | 7.003483e-49 | -8.615850e-47 |
| Msa0535400 | Msa1030210 | 0.803969 | 2.704598e-49 | -8.615850e-47 |
| Msa0535400 | Msa1034450 | 0.800386 | 1.476983e-48 | -8.615850e-47 |
| Msa0535400 | Msa1034950 | 0.811460 | 6.923128e-51 | -8.615850e-47 |
| Msa0535400 | Msa1035050 | 0.801094 | 1.058722e-48 | -8.615850e-47 |
| Msa0535400 | Msa1062060 | 0.805501 | 1.294742e-49 | -8.615850e-47 |
| Msa0535400 | Msa1074200 | 0.805746 | 1.150282e-49 | -8.615850e-47 |
| Msa0535400 | Msa1075010 | 0.812187 | 4.810219e-51 | -8.615850e-47 |
| Msa0535400 | Msa1075090 | 0.803810 | 2.918186e-49 | -8.615850e-47 |
| Msa0535400 | Msa1077970 | 0.807358 | 5.256066e-50 | -8.615850e-47 |
| Msa0535400 | Msa1080130 | 0.849539 | 3.031290e-60 | -8.615850e-47 |
| Msa0535400 | Msa1087070 | -0.811952 | 5.412581e-51 | -8.615850e-47 |
| Msa0535400 | Msa1092310 | 0.812367 | 4.392847e-51 | -8.615850e-47 |
| Msa0535400 | Msa1107220 | 0.841965 | 3.449388e-58 | -8.615850e-47 |
| Msa0535400 | Msa1111900 | 0.829412 | 5.224170e-55 | -8.615850e-47 |
| Msa0535400 | Msa1114670 | 0.804934 | 1.701640e-49 | -8.615850e-47 |
| Msa0535400 | Msa1126320 | -0.802090 | 6.615527e-49 | -8.615850e-47 |
| Msa0535400 | Msa1129120 | -0.801482 | 8.817043e-49 | -8.615850e-47 |
| Msa0535400 | Msa1133700 | 0.809251 | 2.074894e-50 | -8.615850e-47 |
| Msa0535400 | Msa1133760 | 0.805687 | 1.183473e-49 | -8.615850e-47 |
| Msa0535400 | Msa1136760 | 0.823378 | 1.430562e-53 | -8.615850e-47 |
| Msa0535400 | Msa1150760 | 0.814582 | 1.431756e-51 | -8.615850e-47 |
| Msa0535400 | Msa1155200 | -0.804804 | 1.811758e-49 | -8.615850e-47 |
| Msa0535400 | Msa1157110 | 0.800410 | 1.460086e-48 | -8.615850e-47 |
| Msa0535400 | Msa1167310 | 0.861150 | 1.255376e-63 | -8.615850e-47 |
| Msa0535400 | Msa1173150 | 0.842529 | 2.445873e-58 | -8.615850e-47 |
| Msa0535400 | Msa1185270 | 0.827618 | 1.416239e-54 | -8.615850e-47 |
| Msa0535400 | Msa1202110 | 0.818148 | 2.280608e-52 | -8.615850e-47 |
| Msa0535400 | Msa1202800 | 0.805106 | 1.566499e-49 | -8.615850e-47 |
| Msa0535400 | Msa1215740 | 0.803597 | 3.231926e-49 | -8.615850e-47 |
| Msa0535400 | Msa1221270 | 0.813674 | 2.271185e-51 | -8.615850e-47 |
| Msa0535400 | Msa1238600 | 0.820390 | 7.034767e-53 | -8.615850e-47 |
| Msa0535400 | Msa1239210 | 0.827123 | 1.860916e-54 | -8.615850e-47 |
| Msa0535400 | Msa1248060 | 0.808557 | 2.921492e-50 | -8.615850e-47 |
| Msa0535400 | Msa1251440 | -0.801332 | 9.465488e-49 | -8.615850e-47 |
| Msa0535400 | Msa1254870 | 0.817508 | 3.179472e-52 | -8.615850e-47 |
| Msa0535400 | Msa1255210 | 0.809108 | 2.227188e-50 | -8.615850e-47 |
| Msa0535400 | Msa1262540 | 0.802284 | 6.033993e-49 | -8.615850e-47 |
| Msa0535400 | Msa1268390 | 0.808663 | 2.773097e-50 | -8.615850e-47 |
| Msa0535400 | Msa1268420 | 0.800002 | 1.767604e-48 | -8.615850e-47 |
| Msa0535400 | Msa1269200 | 0.827299 | 1.688895e-54 | -8.615850e-47 |
| Msa0535400 | Msa1289050 | 0.845921 | 3.003451e-59 | -8.615850e-47 |
| Msa0535400 | Msa1289090 | 0.848276 | 6.795278e-60 | -8.615850e-47 |
| Msa0535400 | Msa1295650 | 0.803404 | 3.542807e-49 | -8.615850e-47 |
| Msa0535400 | Msa1307530 | 0.805118 | 1.557811e-49 | -8.615850e-47 |
| Msa0535400 | Msa1317740 | 0.802342 | 5.870394e-49 | -8.615850e-47 |
| Msa0535400 | Msa1328430 | 0.818845 | 1.584911e-52 | -8.615850e-47 |
| Msa0535400 | Msa1331570 | -0.804949 | 1.689594e-49 | -8.615850e-47 |
| Msa0535400 | Msa1333880 | 0.800018 | 1.754302e-48 | -8.615850e-47 |
| Msa0535400 | Msa1357570 | 0.806315 | 8.733147e-50 | -8.615850e-47 |
| Msa0535400 | Msa1393730 | 0.826614 | 2.462465e-54 | -8.615850e-47 |
| Msa0535400 | Msa1395110 | 0.823711 | 1.195474e-53 | -8.615850e-47 |
| Msa0535400 | Msa1395200 | -0.810212 | 1.289488e-50 | -8.615850e-47 |
| Msa0535400 | Msa1395250 | 0.802734 | 4.874937e-49 | -8.615850e-47 |
| Msa0535400 | Msa1398140 | 0.801764 | 7.718692e-49 | -8.615850e-47 |
| Msa0535400 | Msa1404050 | 0.841255 | 5.308678e-58 | -8.615850e-47 |
| Msa0535400 | Msa1442200 | 0.806519 | 7.909965e-50 | -8.615850e-47 |
| Msa0535400 | Msa1455200 | 0.816200 | 6.250432e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0535400 | MtrunA17_Chr4g0010051 | 98.874 | 444 | 5 | 0 | 1 | 444 | 1 | 444 | 0.0 | 905 |
| Msa0535400 | MtrunA17_Chr2g0328031 | 60.364 | 439 | 163 | 7 | 11 | 442 | 4 | 438 | 0.0 | 525 |
| Msa0535400 | MtrunA17_Chr4g0031491 | 60.089 | 451 | 162 | 7 | 1 | 444 | 1 | 440 | 0.0 | 516 |
| Msa0535400 | MtrunA17_Chr6g0472461 | 27.126 | 435 | 251 | 10 | 22 | 420 | 14 | 418 | 7.91e-35 | 135 |
| Msa0535400 | MtrunA17_Chr4g0073161 | 27.897 | 466 | 246 | 13 | 22 | 433 | 20 | 449 | 7.45e-34 | 132 |
| Msa0535400 | MtrunA17_Chr1g0203651 | 29.412 | 238 | 132 | 7 | 154 | 384 | 47 | 255 | 5.07e-18 | 85.5 |
| Msa0535400 | MtrunA17_Chr6g0461061 | 31.250 | 192 | 114 | 5 | 57 | 247 | 181 | 355 | 6.47e-14 | 73.6 |
| Msa0535400 | MtrunA17_Chr6g0461061 | 27.442 | 215 | 108 | 3 | 56 | 227 | 246 | 455 | 3.09e-11 | 65.5 |
| Msa0535400 | MtrunA17_Chr7g0274241 | 27.206 | 272 | 165 | 7 | 22 | 266 | 18 | 283 | 6.84e-14 | 73.6 |
| Msa0535400 | MtrunA17_Chr7g0263421 | 28.270 | 237 | 143 | 10 | 13 | 242 | 45 | 261 | 3.06e-12 | 68.6 |
| Msa0535400 | MtrunA17_Chr5g0409271 | 30.539 | 167 | 94 | 6 | 57 | 222 | 15 | 160 | 9.43e-12 | 65.5 |
| Msa0535400 | MtrunA17_Chr1g0212971 | 25.806 | 217 | 145 | 5 | 7 | 222 | 121 | 322 | 1.23e-11 | 66.6 |
| Msa0535400 | MtrunA17_Chr1g0196261 | 25.893 | 224 | 149 | 6 | 21 | 233 | 220 | 437 | 2.48e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0535400 | AT2G28840.1 | 59.695 | 459 | 160 | 7 | 1 | 444 | 1 | 449 | 0.0 | 519 |
| Msa0535400 | AT2G28840.2 | 64.249 | 386 | 120 | 5 | 74 | 444 | 53 | 435 | 1.51e-169 | 483 |
| Msa0535400 | AT5G07270.1 | 28.465 | 404 | 218 | 9 | 55 | 417 | 47 | 420 | 2.30e-33 | 132 |
| Msa0535400 | AT5G57740.1 | 26.357 | 387 | 233 | 8 | 22 | 384 | 20 | 378 | 1.63e-27 | 115 |
| Msa0535400 | AT3G04710.3 | 26.415 | 265 | 162 | 6 | 24 | 261 | 244 | 502 | 1.37e-13 | 73.6 |
| Msa0535400 | AT3G04710.1 | 26.415 | 265 | 162 | 6 | 24 | 261 | 20 | 278 | 2.14e-13 | 72.4 |
| Msa0535400 | AT3G12360.1 | 27.619 | 210 | 130 | 7 | 18 | 223 | 130 | 321 | 5.57e-13 | 71.2 |
| Msa0535400 | AT3G12360.2 | 27.619 | 210 | 130 | 7 | 18 | 223 | 118 | 309 | 5.88e-13 | 71.2 |
| Msa0535400 | AT1G07710.2 | 29.148 | 223 | 128 | 10 | 9 | 223 | 58 | 258 | 8.09e-13 | 70.9 |
| Msa0535400 | AT1G07710.1 | 29.148 | 223 | 128 | 10 | 9 | 223 | 58 | 258 | 8.09e-13 | 70.9 |
| Msa0535400 | AT5G20350.1 | 25.984 | 254 | 168 | 6 | 3 | 254 | 17 | 252 | 1.14e-12 | 70.5 |
| Msa0535400 | AT5G60070.1 | 27.734 | 256 | 162 | 6 | 16 | 261 | 30 | 272 | 4.38e-12 | 68.6 |
Find 177 sgRNAs with CRISPR-Local
Find 305 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACCCATTTCCTCTCTTTAA+TGG | 0.169535 | 4_1:+11659846 | None:intergenic |
| AACCTGCCCACCGCGATTTC+GGG | 0.180793 | 4_1:+11660044 | None:intergenic |
| ATATACTTACACTTTATATT+TGG | 0.195784 | 4_1:+11655836 | None:intergenic |
| TATAGGTTTAAATATGTATT+TGG | 0.200894 | 4_1:-11655375 | Msa0535400:three_prime_UTR |
| CATAGACACACACCTGTTTA+TGG | 0.203955 | 4_1:+11658319 | None:intergenic |
| GTATGTCATTATCCTTTAAT+AGG | 0.211743 | 4_1:+11656645 | None:intergenic |
| GAACCTGCCCACCGCGATTT+CGG | 0.212773 | 4_1:+11660043 | None:intergenic |
| CTTCACCTGTTGCAGATTCT+TGG | 0.226383 | 4_1:-11657831 | Msa0535400:intron |
| TCAAGAAGCCAAGGCCTTAT+TGG | 0.227680 | 4_1:-11656708 | Msa0535400:CDS |
| CAAGAGCCCCGTTGTCTAAT+AGG | 0.267984 | 4_1:+11657618 | None:intergenic |
| TTGAATAGATTGACAAGTTC+CGG | 0.271170 | 4_1:+11655613 | None:intergenic |
| AAAGCTTCAAATATATTGTT+TGG | 0.284131 | 4_1:-11655467 | Msa0535400:three_prime_UTR |
| TTGCACTATGCTGCTTATTA+TGG | 0.284145 | 4_1:-11657895 | Msa0535400:CDS |
| TGAGGATGATGTTGGTGTTT+TGG | 0.299141 | 4_1:-11659717 | Msa0535400:CDS |
| TGGCCATGTAGATTCATTAA+AGG | 0.303923 | 4_1:-11657875 | Msa0535400:CDS |
| TGTCCGGATGCTGCTTGCTT+GGG | 0.304175 | 4_1:-11657426 | Msa0535400:CDS |
| AAGCTTCAAATATATTGTTT+GGG | 0.312921 | 4_1:-11655466 | Msa0535400:three_prime_UTR |
| CATCAGCCGCACCTCTTGTT+TGG | 0.313334 | 4_1:-11656763 | Msa0535400:CDS |
| AGGATCGCTAGTCGCAATTC+AGG | 0.319801 | 4_1:-11656132 | Msa0535400:CDS |
| AGTCTTTGTAATCCGGTTAT+CGG | 0.319837 | 4_1:-11655893 | Msa0535400:three_prime_UTR |
| GATCCATTAAAGAGAGGAAA+TGG | 0.320827 | 4_1:-11659849 | Msa0535400:exon |
| GCGGCGCGTGAGGAAGTTTC+CGG | 0.328823 | 4_1:-11659899 | Msa0535400:five_prime_UTR |
| GAGAGAAAAGGCCCTATTAA+AGG | 0.346636 | 4_1:-11656657 | Msa0535400:CDS |
| CCGGTGGTGCAACCGGTTGC+AGG | 0.348073 | 4_1:+11656330 | None:intergenic |
| TTTGCTTCTGCTGTTGTGAA+TGG | 0.354727 | 4_1:-11659767 | Msa0535400:CDS |
| AATCTATTCAACTGAAGAAT+TGG | 0.357508 | 4_1:-11655601 | Msa0535400:three_prime_UTR |
| AGGATGGCACCTCGACAAAA+TGG | 0.371108 | 4_1:+11656297 | None:intergenic |
| ACGCCTTACTAGAAGCTAAC+AGG | 0.373800 | 4_1:-11656682 | Msa0535400:CDS |
| AGAGGTACTATATTCTTATA+TGG | 0.376146 | 4_1:-11655924 | Msa0535400:three_prime_UTR |
| GTGCAACCGGTTGCAGGATC+AGG | 0.376909 | 4_1:+11656336 | None:intergenic |
| AGGACATTATGCAGATTTCC+TGG | 0.380514 | 4_1:-11657494 | Msa0535400:intron |
| AACTGGTCCGGTGGTGCAAC+CGG | 0.382400 | 4_1:+11656323 | None:intergenic |
| GTGTCCGGATGCTGCTTGCT+TGG | 0.389067 | 4_1:-11657427 | Msa0535400:CDS |
| TGTGCTTCAACCGGTGGATA+CGG | 0.393674 | 4_1:-11657593 | Msa0535400:CDS |
| TTCATTTCCTATTAGACAAC+GGG | 0.394782 | 4_1:-11657625 | Msa0535400:CDS |
| CTGTTTGAGTCTTTGTAATC+CGG | 0.395791 | 4_1:-11655900 | Msa0535400:three_prime_UTR |
| AGACATCGACTTTGACATTC+CGG | 0.396524 | 4_1:+11658349 | None:intergenic |
| TGAATAGATTGACAAGTTCC+GGG | 0.399754 | 4_1:+11655614 | None:intergenic |
| TATGTCATTATCCTTTAATA+GGG | 0.402831 | 4_1:+11656646 | None:intergenic |
| ATATGTAGCGGTGTTCTTCC+AGG | 0.406530 | 4_1:+11657476 | None:intergenic |
| GATGGAAATTGTTGAAAGTA+TGG | 0.408192 | 4_1:-11659741 | Msa0535400:CDS |
| GCTCTTGTTTGTGCTTCAAC+CGG | 0.413267 | 4_1:-11657602 | Msa0535400:CDS |
| CCTGCAACCGGTTGCACCAC+CGG | 0.414382 | 4_1:-11656330 | Msa0535400:CDS |
| CTTAGTGATCGTTCGGTCAA+TGG | 0.415311 | 4_1:+11655962 | None:intergenic |
| TTGTCAGCCATTGGCTCATT+CGG | 0.419213 | 4_1:-11656156 | Msa0535400:CDS |
| TTCAAATAAAATGCTACTAT+AGG | 0.423105 | 4_1:+11655995 | None:intergenic |
| TGCATCACAGCCAACATTAA+CGG | 0.430406 | 4_1:+11658162 | None:intergenic |
| CTCCCCAAGCAAGCAGCATC+CGG | 0.432906 | 4_1:+11657423 | None:intergenic |
| TGTCTTGAATCGCCATAAAC+AGG | 0.438427 | 4_1:-11658331 | Msa0535400:intron |
| TCTTGGCAACATTTAATTGA+AGG | 0.438454 | 4_1:+11656277 | None:intergenic |
| TGCTTTCGATGTTGTTGGAC+CGG | 0.439129 | 4_1:-11658368 | Msa0535400:CDS |
| ATTGGTATTTCAAAGTTTAG+TGG | 0.443478 | 4_1:-11655583 | Msa0535400:three_prime_UTR |
| GTCAAAGTTCAACCGATAAC+CGG | 0.443975 | 4_1:+11655881 | None:intergenic |
| ACCGTGATCACCGCCGTATT+AGG | 0.444358 | 4_1:-11659921 | Msa0535400:five_prime_UTR |
| TTAGGTGCTTTCGATGTTGT+TGG | 0.446176 | 4_1:-11658373 | Msa0535400:intron |
| TCTCGTATAGGAAAGCAATA+TGG | 0.446420 | 4_1:-11656463 | Msa0535400:intron |
| TGCCCGAAATCGCGGTGGGC+AGG | 0.449083 | 4_1:-11660046 | Msa0535400:five_prime_UTR |
| AATCACCATTCATATGTCAT+TGG | 0.450883 | 4_1:+11656041 | None:intergenic |
| AGGCTTCAATTAGATTCCTC+CGG | 0.459384 | 4_1:-11657395 | Msa0535400:CDS |
| GAATGATCTTAGTGATCGTT+CGG | 0.460942 | 4_1:+11655955 | None:intergenic |
| TTCAAGAGTTTGTCAGCCAT+TGG | 0.462380 | 4_1:-11656165 | Msa0535400:CDS |
| GGAAATAAGCAGTTAAGTAT+TGG | 0.464188 | 4_1:+11659984 | None:intergenic |
| ATCACTATCAGTCTTGATCT+TGG | 0.466006 | 4_1:+11656260 | None:intergenic |
| TTAGTGATCGTTCGGTCAAT+GGG | 0.467728 | 4_1:+11655963 | None:intergenic |
| CTGATGAACTTTAGCGGAGA+TGG | 0.469218 | 4_1:+11656740 | None:intergenic |
| ATGTTGATGTTCAAATCTCT+TGG | 0.469591 | 4_1:-11655779 | Msa0535400:three_prime_UTR |
| AAGAAGCCTGATCCTGCAAC+CGG | 0.473327 | 4_1:-11656342 | Msa0535400:CDS |
| TCCTCACGCGCCGCCTAATA+CGG | 0.478150 | 4_1:+11659908 | None:intergenic |
| CAGTTAAGTATTGGATGGAT+TGG | 0.478888 | 4_1:+11659993 | None:intergenic |
| GCCTAATACGGCGGTGATCA+CGG | 0.482711 | 4_1:+11659920 | None:intergenic |
| CCTCGACAAAATGGACAAAC+TGG | 0.484711 | 4_1:+11656306 | None:intergenic |
| TGACCTCAATTGTGCACACT+TGG | 0.486372 | 4_1:+11656418 | None:intergenic |
| TTGGTTGGACTGAAGAAGTC+AGG | 0.492319 | 4_1:+11659963 | None:intergenic |
| CTCCCTGTTAGCTTCTAGTA+AGG | 0.494532 | 4_1:+11656679 | None:intergenic |
| GTGCTTCAACCGGTGGATAC+GGG | 0.495609 | 4_1:-11657592 | Msa0535400:intron |
| TGCTTGCTTGGGGAGCAGAT+AGG | 0.501868 | 4_1:-11657415 | Msa0535400:CDS |
| TGGAAGAACACCGCTACATA+TGG | 0.502557 | 4_1:-11657474 | Msa0535400:CDS |
| AGTATTGGATGGATTGGTGA+TGG | 0.502715 | 4_1:+11659999 | None:intergenic |
| AACTGTGGCTGAGTAATGAT+AGG | 0.503245 | 4_1:-11655500 | Msa0535400:three_prime_UTR |
| GCTGTGATGCATGGAAAGAC+TGG | 0.505325 | 4_1:-11658150 | Msa0535400:CDS |
| TGTAAGTATATATGAGATGA+AGG | 0.505326 | 4_1:-11655824 | Msa0535400:three_prime_UTR |
| GCACGTGAAGAAGTGATTGC+CGG | 0.506647 | 4_1:+11659880 | None:intergenic |
| AGCTCGCTGATGAACTTTAG+CGG | 0.516523 | 4_1:+11656734 | None:intergenic |
| ATAAGCAGTTAAGTATTGGA+TGG | 0.519978 | 4_1:+11659988 | None:intergenic |
| CTTGTTTGTGCTTCAACCGG+TGG | 0.520146 | 4_1:-11657599 | Msa0535400:CDS |
| CGACCAAGTGTGCACAATTG+AGG | 0.520454 | 4_1:-11656421 | Msa0535400:CDS |
| ACTAACCAAGAATCTGCAAC+AGG | 0.521723 | 4_1:+11657826 | None:intergenic |
| TTCTTAAGAGCAACTGTGAA+CGG | 0.522067 | 4_1:+11656821 | None:intergenic |
| TCCGGGTTGCAAATGAATCA+TGG | 0.523375 | 4_1:+11655631 | None:intergenic |
| GTGGTTCTGTGGACTGTGTC+CGG | 0.525522 | 4_1:-11657442 | Msa0535400:CDS |
| TCCATGATTCATTTGCAACC+CGG | 0.526182 | 4_1:-11655632 | Msa0535400:three_prime_UTR |
| GGCTTCAATTAGATTCCTCC+GGG | 0.526424 | 4_1:-11657394 | Msa0535400:intron |
| CGCCTTACTAGAAGCTAACA+GGG | 0.528470 | 4_1:-11656681 | Msa0535400:CDS |
| TAAGTCTTGATGATTGCTGA+TGG | 0.529306 | 4_1:-11656075 | Msa0535400:three_prime_UTR |
| AACAAGAGGTGCGGCTGATG+AGG | 0.531096 | 4_1:+11656766 | None:intergenic |
| AGCTAACAGGGAGAGAGAAA+AGG | 0.531496 | 4_1:-11656669 | Msa0535400:CDS |
| GGCAACATTTAATTGAAGGA+TGG | 0.535795 | 4_1:+11656281 | None:intergenic |
| AGAAAATCAAATTTCAGCGA+AGG | 0.537043 | 4_1:-11656198 | Msa0535400:CDS |
| AAGTTGAAAATGAATGAGTC+CGG | 0.538126 | 4_1:+11655664 | None:intergenic |
| AGCAGCAAGGTGCAGTGGCG+TGG | 0.539801 | 4_1:+11657670 | None:intergenic |
| CGGCTGATGAGGGATCGAGC+AGG | 0.540258 | 4_1:+11656777 | None:intergenic |
| TCTTGAGGCAGCATAGTGCT+AGG | 0.541497 | 4_1:+11656361 | None:intergenic |
| TTGCAGGATCAGGCTTCTTG+AGG | 0.542464 | 4_1:+11656346 | None:intergenic |
| GTGATGGGAATATGTTGTCT+TGG | 0.543188 | 4_1:+11660015 | None:intergenic |
| GAAAATCAAATTTCAGCGAA+GGG | 0.543834 | 4_1:-11656197 | Msa0535400:CDS |
| TGCTGTTGTGAATGGTGAGA+TGG | 0.545702 | 4_1:-11659759 | Msa0535400:CDS |
| CAGCCATTGGCTCATTCGGA+AGG | 0.547162 | 4_1:-11656152 | Msa0535400:CDS |
| GGCGGCTCGTGGTGGTTCTG+TGG | 0.548964 | 4_1:-11657453 | Msa0535400:CDS |
| ACAAGAGGTGCGGCTGATGA+GGG | 0.550454 | 4_1:+11656767 | None:intergenic |
| AACTACCTCGATCCGACCAT+TGG | 0.550881 | 4_1:+11659646 | None:intergenic |
| ATCCATTAAAGAGAGGAAAT+GGG | 0.550890 | 4_1:-11659848 | Msa0535400:exon |
| TGCTTCCAATGACATATGAA+TGG | 0.552209 | 4_1:-11656046 | Msa0535400:three_prime_UTR |
| TCACGCGCCGCCTAATACGG+CGG | 0.553633 | 4_1:+11659911 | None:intergenic |
| AAGATCATTCAAGACAATAG+AGG | 0.554487 | 4_1:-11655942 | Msa0535400:three_prime_UTR |
| ACAAAATGGACAAACTGGTC+CGG | 0.555387 | 4_1:+11656311 | None:intergenic |
| ATGGAAAAGCTTATTCAAGC+TGG | 0.555583 | 4_1:-11658123 | Msa0535400:CDS |
| CTTCATTTAGCAGCTGCCAA+TGG | 0.555784 | 4_1:-11659662 | Msa0535400:CDS |
| GACACTCAAAGCTTGAATGA+AGG | 0.556560 | 4_1:+11655738 | None:intergenic |
| AGCTTCAAATATATTGTTTG+GGG | 0.558178 | 4_1:-11655465 | Msa0535400:three_prime_UTR |
| GTCCGGATGCTGCTTGCTTG+GGG | 0.558568 | 4_1:-11657425 | Msa0535400:CDS |
| AATCAATCGAGTTGTGTGGT+GGG | 0.566878 | 4_1:-11659821 | Msa0535400:CDS |
| CTACATATGGCGGCTCGTGG+TGG | 0.570162 | 4_1:-11657461 | Msa0535400:CDS |
| GTGAACATAAGAGATGGAAA+TGG | 0.571705 | 4_1:-11657695 | Msa0535400:CDS |
| TCAGAACGTAGTGGAGATGA+AGG | 0.572443 | 4_1:+11656623 | None:intergenic |
| CGGTCAGCTGCCCGAAATCG+CGG | 0.576029 | 4_1:-11660054 | Msa0535400:five_prime_UTR |
| TCTCTAGACACCGTTAATGT+TGG | 0.577223 | 4_1:-11658172 | Msa0535400:intron |
| CAAGTATGATGATATTGTCT+CGG | 0.577587 | 4_1:-11656597 | Msa0535400:CDS |
| CGCTAGTCGCAATTCAGGAA+AGG | 0.581409 | 4_1:-11656127 | Msa0535400:CDS |
| CGTTGTCTAATAGGAAATGA+AGG | 0.581668 | 4_1:+11657627 | None:intergenic |
| GAATCAATCGAGTTGTGTGG+TGG | 0.581898 | 4_1:-11659822 | Msa0535400:CDS |
| GCATGGAAAGACTGGTTGCA+TGG | 0.582253 | 4_1:-11658142 | Msa0535400:CDS |
| ATCAATCGAGTTGTGTGGTG+GGG | 0.584222 | 4_1:-11659820 | Msa0535400:CDS |
| CTTGTTGATCCATTAAAGAG+AGG | 0.584354 | 4_1:-11659855 | Msa0535400:five_prime_UTR |
| ACCTTGCTGCTCGTCATAGA+CGG | 0.587192 | 4_1:-11657658 | Msa0535400:CDS |
| AATTGTTGAAAGTATGGTTG+AGG | 0.587911 | 4_1:-11659735 | Msa0535400:CDS |
| ATTTAGCAGCTGCCAATGGT+CGG | 0.589763 | 4_1:-11659658 | Msa0535400:CDS |
| CGATTATTACCCGTATCCAC+CGG | 0.590839 | 4_1:+11657583 | None:intergenic |
| GTTGCTTAGATACTCTGCAC+AGG | 0.591492 | 4_1:-11655527 | Msa0535400:three_prime_UTR |
| CTTCATTTCCTATTAGACAA+CGG | 0.594191 | 4_1:-11657626 | Msa0535400:CDS |
| TCAGCTGCCCGAAATCGCGG+TGG | 0.597081 | 4_1:-11660051 | Msa0535400:five_prime_UTR |
| GGCTGATGAGGGATCGAGCA+GGG | 0.598983 | 4_1:+11656778 | None:intergenic |
| CTTGAGGCAGCATAGTGCTA+GGG | 0.599231 | 4_1:+11656362 | None:intergenic |
| TTGATGCCGAAAAGCAATGA+GGG | 0.600242 | 4_1:-11656104 | Msa0535400:exon |
| TTGGCAGCTGCTAAATGAAG+AGG | 0.601943 | 4_1:+11659665 | None:intergenic |
| GTGTCTGATGACACACGGCT+TGG | 0.607421 | 4_1:-11655720 | Msa0535400:three_prime_UTR |
| CGAGCTCAATCAAGAAGCCA+AGG | 0.607931 | 4_1:-11656717 | Msa0535400:CDS |
| TTAATGTTGGCTGTGATGCA+TGG | 0.609200 | 4_1:-11658159 | Msa0535400:CDS |
| AGATTTGTGAACATAAGAGA+TGG | 0.609907 | 4_1:-11657701 | Msa0535400:CDS |
| ATCAACATACTCACGCGCCA+AGG | 0.610169 | 4_1:+11655794 | None:intergenic |
| AGCGGAGATGGCCAAACAAG+AGG | 0.611353 | 4_1:+11656752 | None:intergenic |
| TCAATCGAGTTGTGTGGTGG+GGG | 0.613318 | 4_1:-11659819 | Msa0535400:CDS |
| GTATTGGATGGATTGGTGAT+GGG | 0.613897 | 4_1:+11660000 | None:intergenic |
| GATCCTTCCGAATGAGCCAA+TGG | 0.614518 | 4_1:+11656149 | None:intergenic |
| CCAGTCCAACAAAACCAAGA+AGG | 0.616065 | 4_1:-11656224 | Msa0535400:CDS |
| CCGCTACATATGGCGGCTCG+TGG | 0.616354 | 4_1:-11657464 | Msa0535400:CDS |
| TGATATTGTCTCGGATTCTG+AGG | 0.617221 | 4_1:-11656588 | Msa0535400:intron |
| GCCGTATTAGGCGGCGCGTG+AGG | 0.617257 | 4_1:-11659909 | Msa0535400:five_prime_UTR |
| CAGCTGCCCGAAATCGCGGT+GGG | 0.617694 | 4_1:-11660050 | Msa0535400:five_prime_UTR |
| GCACACATTTGATGATCACA+AGG | 0.625070 | 4_1:+11656393 | None:intergenic |
| GTGATCACCGCCGTATTAGG+CGG | 0.626604 | 4_1:-11659918 | Msa0535400:five_prime_UTR |
| TGACGAGCAGCAAGGTGCAG+TGG | 0.629812 | 4_1:+11657665 | None:intergenic |
| ATAAGCAGCATAGTGCAAGC+AGG | 0.631181 | 4_1:+11657900 | None:intergenic |
| AGTATGGTTGAGGATGATGT+TGG | 0.632674 | 4_1:-11659725 | Msa0535400:CDS |
| AGATGGCCAAACAAGAGGTG+CGG | 0.640644 | 4_1:+11656757 | None:intergenic |
| AGCTGCCAATGGTCGGATCG+AGG | 0.641596 | 4_1:-11659651 | Msa0535400:intron |
| TAGCCTTTAATGAATCTACA+TGG | 0.650370 | 4_1:+11657872 | None:intergenic |
| GTTGATGCCGAAAAGCAATG+AGG | 0.652343 | 4_1:-11656105 | Msa0535400:exon |
| AAGAACACCGCTACATATGG+CGG | 0.654317 | 4_1:-11657471 | Msa0535400:CDS |
| AAATGGACAAACTGGTCCGG+TGG | 0.658035 | 4_1:+11656314 | None:intergenic |
| TTTGAGTGTCTGATGACACA+CGG | 0.668632 | 4_1:-11655725 | Msa0535400:three_prime_UTR |
| CTCTGCACAGGTTATAACTG+TGG | 0.669646 | 4_1:-11655515 | Msa0535400:three_prime_UTR |
| CCACGAGCCGCCATATGTAG+CGG | 0.686938 | 4_1:+11657464 | None:intergenic |
| GCCGTCTATGACGAGCAGCA+AGG | 0.687428 | 4_1:+11657657 | None:intergenic |
| TACTTGCTATCAGAACGTAG+TGG | 0.708760 | 4_1:+11656614 | None:intergenic |
| TCAGAATCAATCGAGTTGTG+TGG | 0.722101 | 4_1:-11659825 | Msa0535400:CDS |
| TCATTTCCTATTAGACAACG+GGG | 0.749569 | 4_1:-11657624 | Msa0535400:CDS |
| TAATACGGCGGTGATCACGG+TGG | 0.758309 | 4_1:+11659923 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTATTTAATTTTAAA+TGG | - | chr4_1:11658188-11658207 | Msa0535400:intron | 0.0% |
| !! | ATTTACTTAAATTATACATA+TGG | - | chr4_1:11655887-11655906 | Msa0535400:three_prime_UTR | 10.0% |
| !!! | TCATTTTCTTAAATTATTAT+CGG | - | chr4_1:11656010-11656029 | Msa0535400:three_prime_UTR | 10.0% |
| !!! | TTTTTGAAAAAATTACATTT+TGG | - | chr4_1:11656436-11656455 | Msa0535400:CDS | 10.0% |
| !!! | ATTTTTTCTAAAATCTATTT+TGG | + | chr4_1:11656560-11656579 | None:intergenic | 10.0% |
| !! | AAATTATATCATAAAAAACT+AGG | - | chr4_1:11658121-11658140 | Msa0535400:CDS | 10.0% |
| !!! | ACTTCTAAATAATAGTTTTA+TGG | + | chr4_1:11656850-11656869 | None:intergenic | 15.0% |
| !! | TAGTCAAACTATAATTTAAA+AGG | + | chr4_1:11658433-11658452 | None:intergenic | 15.0% |
| !! | ATATACTTACACTTTATATT+TGG | + | chr4_1:11659580-11659599 | None:intergenic | 15.0% |
| !!! | CTTTAGATGTTTTATATTAT+AGG | - | chr4_1:11660021-11660040 | Msa0535400:five_prime_UTR | 15.0% |
| !! | TATAGGTTTAAATATGTATT+TGG | - | chr4_1:11660038-11660057 | Msa0535400:five_prime_UTR | 15.0% |
| !! | ACTTAAATTATACATATGGT+TGG | - | chr4_1:11655891-11655910 | Msa0535400:three_prime_UTR | 20.0% |
| !!! | GAACTTTTTATGACTATATT+TGG | - | chr4_1:11656110-11656129 | Msa0535400:CDS | 20.0% |
| !! | TTTATGACTATATTTGGATT+AGG | - | chr4_1:11656116-11656135 | Msa0535400:CDS | 20.0% |
| !! | AAGTTAAAATCATCCAAAAA+TGG | + | chr4_1:11656281-11656300 | None:intergenic | 20.0% |
| !!! | GTTGAAAAGTTTATTTTTAG+TGG | - | chr4_1:11656316-11656335 | Msa0535400:CDS | 20.0% |
| !!! | TTGAAAAAATTACATTTTGG+AGG | - | chr4_1:11656439-11656458 | Msa0535400:CDS | 20.0% |
| !!! | AGATGTTTTTTTTGCTTTAA+AGG | - | chr4_1:11656582-11656601 | Msa0535400:intron | 20.0% |
| !! | TGATTAAAATTGAGTTTGAA+AGG | + | chr4_1:11656737-11656756 | None:intergenic | 20.0% |
| !!! | TCATATTAAACGCATTTTAA+GGG | - | chr4_1:11657355-11657374 | Msa0535400:intron | 20.0% |
| !!! | TTTTAAGGGTAAAATTTAGT+TGG | - | chr4_1:11657369-11657388 | Msa0535400:intron | 20.0% |
| !! | AATCATAGATTCTAAATCAA+TGG | - | chr4_1:11658088-11658107 | Msa0535400:intron | 20.0% |
| !! | TATGATATAATTTACACATG+TGG | + | chr4_1:11658114-11658133 | None:intergenic | 20.0% |
| !! | TATATCATAAAAAACTAGGA+AGG | - | chr4_1:11658125-11658144 | Msa0535400:CDS | 20.0% |
| !!! | ATAATTTGCTTTTAAAATGC+CGG | + | chr4_1:11658166-11658185 | None:intergenic | 20.0% |
| !!! | ACAAGAGTTAAATTTTACTA+AGG | + | chr4_1:11658544-11658563 | None:intergenic | 20.0% |
| !! | TGTAAATAAATATTCTTTGC+AGG | - | chr4_1:11658563-11658582 | Msa0535400:intron | 20.0% |
| !! | TATGTCATTATCCTTTAATA+GGG | + | chr4_1:11658770-11658789 | None:intergenic | 20.0% |
| !! | ATTATAAGTTACTTATTTGC+TGG | - | chr4_1:11658922-11658941 | Msa0535400:intron | 20.0% |
| !! | TTCAAATAAAATGCTACTAT+AGG | + | chr4_1:11659421-11659440 | None:intergenic | 20.0% |
| !!! | TTCATTTTCAACTTACTTTT+TGG | - | chr4_1:11659758-11659777 | Msa0535400:CDS | 20.0% |
| !! | AAAGCTTCAAATATATTGTT+TGG | - | chr4_1:11659946-11659965 | Msa0535400:five_prime_UTR | 20.0% |
| !! | AAGCTTCAAATATATTGTTT+GGG | - | chr4_1:11659947-11659966 | Msa0535400:five_prime_UTR | 20.0% |
| !!! | ATATATATTTTTCAACTCAC+AGG | + | chr4_1:11659986-11660005 | None:intergenic | 20.0% |
| ! | ATAACCAACAATATCTATCA+GGG | + | chr4_1:11655984-11656003 | None:intergenic | 25.0% |
| ! | ATGCATGTATTGAATTTAAG+AGG | - | chr4_1:11656207-11656226 | Msa0535400:CDS | 25.0% |
| ! | TAAATGTATCTTTGGATTGA+AGG | - | chr4_1:11656397-11656416 | Msa0535400:CDS | 25.0% |
| ! | TTTCTTGTATTGAACAAACT+TGG | - | chr4_1:11657176-11657195 | Msa0535400:intron | 25.0% |
| ! | TAGAGACTCAAAAAGAAAAA+GGG | + | chr4_1:11657227-11657246 | None:intergenic | 25.0% |
| !! | CTCATATTAAACGCATTTTA+AGG | - | chr4_1:11657354-11657373 | Msa0535400:intron | 25.0% |
| ! | TGTTAATCTTAGACGAAAAT+TGG | - | chr4_1:11657865-11657884 | Msa0535400:CDS | 25.0% |
| ! | AAGTATGAAATACCAAATAG+AGG | + | chr4_1:11658340-11658359 | None:intergenic | 25.0% |
| !! | AGAGTTAAATTTTACTAAGG+CGG | + | chr4_1:11658541-11658560 | None:intergenic | 25.0% |
| ! | GTATGTCATTATCCTTTAAT+AGG | + | chr4_1:11658771-11658790 | None:intergenic | 25.0% |
| ! | CCAATTATCCAAAAAATCAA+AGG | + | chr4_1:11658862-11658881 | None:intergenic | 25.0% |
| !!! | CCTTTGATTTTTTGGATAAT+TGG | - | chr4_1:11658859-11658878 | Msa0535400:intron | 25.0% |
| !!! | AGAGGTACTATATTCTTATA+TGG | - | chr4_1:11659489-11659508 | Msa0535400:intron | 25.0% |
| ! | TGTAAGTATATATGAGATGA+AGG | - | chr4_1:11659589-11659608 | Msa0535400:intron | 25.0% |
| ! | AATCTATTCAACTGAAGAAT+TGG | - | chr4_1:11659812-11659831 | Msa0535400:CDS | 25.0% |
| ! | ATTGGTATTTCAAAGTTTAG+TGG | - | chr4_1:11659830-11659849 | Msa0535400:CDS | 25.0% |
| ! | AGCTTCAAATATATTGTTTG+GGG | - | chr4_1:11659948-11659967 | Msa0535400:five_prime_UTR | 25.0% |
| !! | ATAAGCAGTTAAGTATTGGA+TGG | + | chr4_1:11655428-11655447 | None:intergenic | 30.0% |
| GGAAATAAGCAGTTAAGTAT+TGG | + | chr4_1:11655432-11655451 | None:intergenic | 30.0% | |
| ATCCATTAAAGAGAGGAAAT+GGG | - | chr4_1:11655565-11655584 | Msa0535400:three_prime_UTR | 30.0% | |
| GATGGAAATTGTTGAAAGTA+TGG | - | chr4_1:11655672-11655691 | Msa0535400:three_prime_UTR | 30.0% | |
| ! | AATTGTTGAAAGTATGGTTG+AGG | - | chr4_1:11655678-11655697 | Msa0535400:three_prime_UTR | 30.0% |
| ATAACCAATCATATGTACCA+TGG | + | chr4_1:11655859-11655878 | None:intergenic | 30.0% | |
| TAACCAACAATATCTATCAG+GGG | + | chr4_1:11655983-11656002 | None:intergenic | 30.0% | |
| CATAACCAACAATATCTATC+AGG | + | chr4_1:11655985-11656004 | None:intergenic | 30.0% | |
| !!! | ATAGAGAAGTGTTTTGTGAT+TGG | - | chr4_1:11656078-11656097 | Msa0535400:three_prime_UTR | 30.0% |
| !!! | TTTGGATTAGGTTTTAGTTC+AGG | - | chr4_1:11656128-11656147 | Msa0535400:CDS | 30.0% |
| ! | GAGTTGACTAAAGCTAATTT+TGG | - | chr4_1:11656255-11656274 | Msa0535400:CDS | 30.0% |
| !! | AAGCTAATTTTGGCCATTTT+TGG | - | chr4_1:11656265-11656284 | Msa0535400:CDS | 30.0% |
| !!! | TTAACTTGCTTTTCAAGTGT+TGG | - | chr4_1:11656294-11656313 | Msa0535400:CDS | 30.0% |
| ATTGATGAGTTTATTCAGAG+TGG | - | chr4_1:11656371-11656390 | Msa0535400:CDS | 30.0% | |
| !! | TTATCTTTGTCATTGACTCT+TGG | - | chr4_1:11657017-11657036 | Msa0535400:intron | 30.0% |
| !! | TTTCTATACGCATTTCTAGT+TGG | - | chr4_1:11657130-11657149 | Msa0535400:intron | 30.0% |
| ! | AGAAAGTGCAGAAATTACAA+AGG | + | chr4_1:11657161-11657180 | None:intergenic | 30.0% |
| CTAGAGACTCAAAAAGAAAA+AGG | + | chr4_1:11657228-11657247 | None:intergenic | 30.0% | |
| TAGCCTTTAATGAATCTACA+TGG | + | chr4_1:11657544-11657563 | None:intergenic | 30.0% | |
| TGAGAACATACAAATACGAA+TGG | - | chr4_1:11657646-11657665 | Msa0535400:CDS | 30.0% | |
| AGATTTGTGAACATAAGAGA+TGG | - | chr4_1:11657712-11657731 | Msa0535400:CDS | 30.0% | |
| CTTCATTTCCTATTAGACAA+CGG | - | chr4_1:11657787-11657806 | Msa0535400:intron | 30.0% | |
| TTCATTTCCTATTAGACAAC+GGG | - | chr4_1:11657788-11657807 | Msa0535400:intron | 30.0% | |
| TCTTCATTAAGACTGATCAA+AGG | - | chr4_1:11657899-11657918 | Msa0535400:CDS | 30.0% | |
| GAAACATATGTTTACTTACC+CGG | + | chr4_1:11658040-11658059 | None:intergenic | 30.0% | |
| AAGGTTTCATGATTAATTGC+CGG | - | chr4_1:11658144-11658163 | Msa0535400:CDS | 30.0% | |
| !!! | TTGACACTACATGCTATTTT+TGG | - | chr4_1:11658293-11658312 | Msa0535400:intron | 30.0% |
| !!! | TGACACTACATGCTATTTTT+GGG | - | chr4_1:11658294-11658313 | Msa0535400:intron | 30.0% |
| TACTTCTTTGAACCTCTATT+TGG | - | chr4_1:11658325-11658344 | Msa0535400:intron | 30.0% | |
| ! | TGAATTGATTAGCTGAAAAC+AGG | - | chr4_1:11658375-11658394 | Msa0535400:intron | 30.0% |
| ! | GAGTTAAATTTTACTAAGGC+GGG | + | chr4_1:11658540-11658559 | None:intergenic | 30.0% |
| CAAGTATGATGATATTGTCT+CGG | - | chr4_1:11658816-11658835 | Msa0535400:intron | 30.0% | |
| TCTTGGCAACATTTAATTGA+AGG | + | chr4_1:11659139-11659158 | None:intergenic | 30.0% | |
| !! | TTTGATTTTCTTGACCTTCT+TGG | + | chr4_1:11659206-11659225 | None:intergenic | 30.0% |
| AGAAAATCAAATTTCAGCGA+AGG | - | chr4_1:11659215-11659234 | Msa0535400:intron | 30.0% | |
| GAAAATCAAATTTCAGCGAA+GGG | - | chr4_1:11659216-11659235 | Msa0535400:intron | 30.0% | |
| AATCACCATTCATATGTCAT+TGG | + | chr4_1:11659375-11659394 | None:intergenic | 30.0% | |
| AAGATCATTCAAGACAATAG+AGG | - | chr4_1:11659471-11659490 | Msa0535400:intron | 30.0% | |
| ATGTTGATGTTCAAATCTCT+TGG | - | chr4_1:11659634-11659653 | Msa0535400:intron | 30.0% | |
| AAGTTGAAAATGAATGAGTC+CGG | + | chr4_1:11659752-11659771 | None:intergenic | 30.0% | |
| TTGAATAGATTGACAAGTTC+CGG | + | chr4_1:11659803-11659822 | None:intergenic | 30.0% | |
| !! | CAGTTAAGTATTGGATGGAT+TGG | + | chr4_1:11655423-11655442 | None:intergenic | 35.0% |
| !!! | TTTTTGGTAAGTTGGTTGGT+TGG | + | chr4_1:11655468-11655487 | None:intergenic | 35.0% |
| CTTGTTGATCCATTAAAGAG+AGG | - | chr4_1:11655558-11655577 | Msa0535400:three_prime_UTR | 35.0% | |
| GATCCATTAAAGAGAGGAAA+TGG | - | chr4_1:11655564-11655583 | Msa0535400:three_prime_UTR | 35.0% | |
| !! | GTCTTTAATCAAAAGTGTCG+AGG | + | chr4_1:11655924-11655943 | None:intergenic | 35.0% |
| !! | CTTTTGATTAAAGACGTGTC+TGG | - | chr4_1:11655929-11655948 | Msa0535400:three_prime_UTR | 35.0% |
| ATGAATCACTGACACAAACA+CGG | + | chr4_1:11656060-11656079 | None:intergenic | 35.0% | |
| !! | GAAGTGTTTTGTGATTGGTT+TGG | - | chr4_1:11656083-11656102 | Msa0535400:three_prime_UTR | 35.0% |
| !! | AGTGGCTCTAAATGTATCTT+TGG | - | chr4_1:11656389-11656408 | Msa0535400:CDS | 35.0% |
| ATGTATCTTTGGATTGAAGG+TGG | - | chr4_1:11656400-11656419 | Msa0535400:CDS | 35.0% | |
| !! | TACATTTTGGAGGTTCAATG+AGG | - | chr4_1:11656449-11656468 | Msa0535400:CDS | 35.0% |
| AAACTAAACAAACACACGCT+TGG | + | chr4_1:11656503-11656522 | None:intergenic | 35.0% | |
| GAAAGGAAATGACTTACGTT+TGG | + | chr4_1:11656720-11656739 | None:intergenic | 35.0% | |
| GTTGAGAAGTTTACAGAAAG+TGG | - | chr4_1:11656915-11656934 | Msa0535400:intron | 35.0% | |
| AAACATGAGAGATGCACAAA+GGG | + | chr4_1:11656999-11657018 | None:intergenic | 35.0% | |
| TAAACATGAGAGATGCACAA+AGG | + | chr4_1:11657000-11657019 | None:intergenic | 35.0% | |
| !! | TTTGTCATTGACTCTTGGTT+AGG | - | chr4_1:11657022-11657041 | Msa0535400:intron | 35.0% |
| ATGGAAAAGCTTATTCAAGC+TGG | - | chr4_1:11657290-11657309 | Msa0535400:intron | 35.0% | |
| GTTAGTGTTTACTCAATCAG+AGG | - | chr4_1:11657430-11657449 | Msa0535400:CDS | 35.0% | |
| ! | TTGCACTATGCTGCTTATTA+TGG | - | chr4_1:11657518-11657537 | Msa0535400:intron | 35.0% |
| TGGCCATGTAGATTCATTAA+AGG | - | chr4_1:11657538-11657557 | Msa0535400:intron | 35.0% | |
| GTCAAAATCATTGAACGGTT+TGG | + | chr4_1:11657680-11657699 | None:intergenic | 35.0% | |
| !! | AACCGTTCAATGATTTTGAC+AGG | - | chr4_1:11657680-11657699 | Msa0535400:CDS | 35.0% |
| !! | ACCGTTCAATGATTTTGACA+GGG | - | chr4_1:11657681-11657700 | Msa0535400:CDS | 35.0% |
| GTGAACATAAGAGATGGAAA+TGG | - | chr4_1:11657718-11657737 | Msa0535400:intron | 35.0% | |
| CGTTGTCTAATAGGAAATGA+AGG | + | chr4_1:11657789-11657808 | None:intergenic | 35.0% | |
| TCATTTCCTATTAGACAACG+GGG | - | chr4_1:11657789-11657808 | Msa0535400:intron | 35.0% | |
| TTCTTAAGAGCAACTGTGAA+CGG | + | chr4_1:11658595-11658614 | None:intergenic | 35.0% | |
| !! | TAGTAAGGCGTTTTCCAATA+AGG | + | chr4_1:11658722-11658741 | None:intergenic | 35.0% |
| !!! | AGCGTCTTCCTTTGATTTTT+TGG | - | chr4_1:11658851-11658870 | Msa0535400:intron | 35.0% |
| !! | TTGCTGGTTATTTCTCGTAT+AGG | - | chr4_1:11658938-11658957 | Msa0535400:intron | 35.0% |
| TCTCGTATAGGAAAGCAATA+TGG | - | chr4_1:11658950-11658969 | Msa0535400:intron | 35.0% | |
| GGCAACATTTAATTGAAGGA+TGG | + | chr4_1:11659135-11659154 | None:intergenic | 35.0% | |
| ATCACTATCAGTCTTGATCT+TGG | + | chr4_1:11659156-11659175 | None:intergenic | 35.0% | |
| !! | AGAAATCCCTCATTGCTTTT+CGG | + | chr4_1:11659318-11659337 | None:intergenic | 35.0% |
| ! | TAAGTCTTGATGATTGCTGA+TGG | - | chr4_1:11659338-11659357 | Msa0535400:intron | 35.0% |
| TGCTTCCAATGACATATGAA+TGG | - | chr4_1:11659367-11659386 | Msa0535400:intron | 35.0% | |
| GAATGATCTTAGTGATCGTT+CGG | + | chr4_1:11659461-11659480 | None:intergenic | 35.0% | |
| CTGTTTGAGTCTTTGTAATC+CGG | - | chr4_1:11659513-11659532 | Msa0535400:intron | 35.0% | |
| AGTCTTTGTAATCCGGTTAT+CGG | - | chr4_1:11659520-11659539 | Msa0535400:intron | 35.0% | |
| !!! | GAGATGAAGGTATTTTTCCT+TGG | - | chr4_1:11659602-11659621 | Msa0535400:intron | 35.0% |
| ! | AACGATTTCAGTGTTTTGTC+CGG | - | chr4_1:11659730-11659749 | Msa0535400:CDS | 35.0% |
| TGAATAGATTGACAAGTTCC+GGG | + | chr4_1:11659802-11659821 | None:intergenic | 35.0% | |
| ! | GTGATGGGAATATGTTGTCT+TGG | + | chr4_1:11655401-11655420 | None:intergenic | 40.0% |
| !! | GTATTGGATGGATTGGTGAT+GGG | + | chr4_1:11655416-11655435 | None:intergenic | 40.0% |
| !! | AGTATTGGATGGATTGGTGA+TGG | + | chr4_1:11655417-11655436 | None:intergenic | 40.0% |
| !!! | GGTGTTTTTGGTAAGTTGGT+TGG | + | chr4_1:11655472-11655491 | None:intergenic | 40.0% |
| GACCCATTTCCTCTCTTTAA+TGG | + | chr4_1:11655570-11655589 | None:intergenic | 40.0% | |
| ! | TCAGAATCAATCGAGTTGTG+TGG | - | chr4_1:11655588-11655607 | Msa0535400:three_prime_UTR | 40.0% |
| ! | AATCAATCGAGTTGTGTGGT+GGG | - | chr4_1:11655592-11655611 | Msa0535400:three_prime_UTR | 40.0% |
| TTTGCTTCTGCTGTTGTGAA+TGG | - | chr4_1:11655646-11655665 | Msa0535400:three_prime_UTR | 40.0% | |
| AGTATGGTTGAGGATGATGT+TGG | - | chr4_1:11655688-11655707 | Msa0535400:three_prime_UTR | 40.0% | |
| !! | TGAGGATGATGTTGGTGTTT+TGG | - | chr4_1:11655696-11655715 | Msa0535400:three_prime_UTR | 40.0% |
| !! | GGTGTTTTGGATAGTACTGT+TGG | - | chr4_1:11655709-11655728 | Msa0535400:three_prime_UTR | 40.0% |
| TCTGGTGTTCCATATGTATC+AGG | - | chr4_1:11655822-11655841 | Msa0535400:three_prime_UTR | 40.0% | |
| CTGGTGTTCCATATGTATCA+GGG | - | chr4_1:11655823-11655842 | Msa0535400:three_prime_UTR | 40.0% | |
| TCTGGTGTTCCATATGTATC+AGG | - | chr4_1:11655822-11655841 | Msa0535400:three_prime_UTR | 40.0% | |
| CTGGTGTTCCATATGTATCA+GGG | - | chr4_1:11655823-11655842 | Msa0535400:three_prime_UTR | 40.0% | |
| TGTTCCATATGTATCAGGGT+CGG | - | chr4_1:11655827-11655846 | Msa0535400:three_prime_UTR | 40.0% | |
| ! | TTTTAGTGGCTGTATAGCGT+TGG | - | chr4_1:11656330-11656349 | Msa0535400:CDS | 40.0% |
| TTGGAGGTTCAATGAGGTAA+TGG | - | chr4_1:11656455-11656474 | Msa0535400:CDS | 40.0% | |
| TACGTTTGATACGTTGATCC+AGG | - | chr4_1:11656790-11656809 | Msa0535400:CDS | 40.0% | |
| GCATTAATAACAAGTGTGCC+TGG | + | chr4_1:11656811-11656830 | None:intergenic | 40.0% | |
| !! | GCGATTTGGAGTTAAGCTTT+TGG | - | chr4_1:11656944-11656963 | Msa0535400:intron | 40.0% |
| TTAGGTGCTTTCGATGTTGT+TGG | - | chr4_1:11657040-11657059 | Msa0535400:intron | 40.0% | |
| !! | AGACATCGACTTTGACATTC+CGG | + | chr4_1:11657067-11657086 | None:intergenic | 40.0% |
| TGTCTTGAATCGCCATAAAC+AGG | - | chr4_1:11657082-11657101 | Msa0535400:intron | 40.0% | |
| CATAGACACACACCTGTTTA+TGG | + | chr4_1:11657097-11657116 | None:intergenic | 40.0% | |
| GGCACAACAAGAATCAGAAT+TGG | + | chr4_1:11657206-11657225 | None:intergenic | 40.0% | |
| TCTCTAGACACCGTTAATGT+TGG | - | chr4_1:11657241-11657260 | Msa0535400:intron | 40.0% | |
| TGCATCACAGCCAACATTAA+CGG | + | chr4_1:11657254-11657273 | None:intergenic | 40.0% | |
| ! | TTAATGTTGGCTGTGATGCA+TGG | - | chr4_1:11657254-11657273 | Msa0535400:intron | 40.0% |
| !! | GTAGCGATTGTGTTGATGAT+TGG | - | chr4_1:11657408-11657427 | Msa0535400:CDS | 40.0% |
| ACTAACCAAGAATCTGCAAC+AGG | + | chr4_1:11657590-11657609 | None:intergenic | 40.0% | |
| ! | CTTGGTTAGTCACTCTTTCA+TGG | - | chr4_1:11657600-11657619 | Msa0535400:CDS | 40.0% |
| ACATGACACATCCATAGATG+GGG | + | chr4_1:11657627-11657646 | None:intergenic | 40.0% | |
| CACATGACACATCCATAGAT+GGG | + | chr4_1:11657628-11657647 | None:intergenic | 40.0% | |
| TCACATGACACATCCATAGA+TGG | + | chr4_1:11657629-11657648 | None:intergenic | 40.0% | |
| CCCCTGTCAAAATCATTGAA+CGG | + | chr4_1:11657685-11657704 | None:intergenic | 40.0% | |
| !! | CCGTTCAATGATTTTGACAG+GGG | - | chr4_1:11657682-11657701 | Msa0535400:CDS | 40.0% |
| !! | CGTTCAATGATTTTGACAGG+GGG | - | chr4_1:11657683-11657702 | Msa0535400:CDS | 40.0% |
| AGGACATTATGCAGATTTCC+TGG | - | chr4_1:11657919-11657938 | Msa0535400:CDS | 40.0% | |
| AGGCTTCAATTAGATTCCTC+CGG | - | chr4_1:11658018-11658037 | Msa0535400:intron | 40.0% | |
| ACATATGTTTACTTACCCGG+AGG | + | chr4_1:11658037-11658056 | None:intergenic | 40.0% | |
| GAGAGAAAAGGCCCTATTAA+AGG | - | chr4_1:11658756-11658775 | Msa0535400:intron | 40.0% | |
| !! | TACTTGCTATCAGAACGTAG+TGG | + | chr4_1:11658802-11658821 | None:intergenic | 40.0% |
| TGATATTGTCTCGGATTCTG+AGG | - | chr4_1:11658825-11658844 | Msa0535400:intron | 40.0% | |
| ! | GCACACATTTGATGATCACA+AGG | + | chr4_1:11659023-11659042 | None:intergenic | 40.0% |
| ACAAAATGGACAAACTGGTC+CGG | + | chr4_1:11659105-11659124 | None:intergenic | 40.0% | |
| !!! | CTTGACCTTCTTGGTTTTGT+TGG | + | chr4_1:11659197-11659216 | None:intergenic | 40.0% |
| TTCAAGAGTTTGTCAGCCAT+TGG | - | chr4_1:11659248-11659267 | Msa0535400:intron | 40.0% | |
| TTGATGCCGAAAAGCAATGA+GGG | - | chr4_1:11659309-11659328 | Msa0535400:intron | 40.0% | |
| !! | TGGTGATTTTACACTTGCTG+TGG | - | chr4_1:11659387-11659406 | Msa0535400:intron | 40.0% |
| TTAGTGATCGTTCGGTCAAT+GGG | + | chr4_1:11659453-11659472 | None:intergenic | 40.0% | |
| GTCAAAGTTCAACCGATAAC+CGG | + | chr4_1:11659535-11659554 | None:intergenic | 40.0% | |
| GACACTCAAAGCTTGAATGA+AGG | + | chr4_1:11659678-11659697 | None:intergenic | 40.0% | |
| TTTGAGTGTCTGATGACACA+CGG | - | chr4_1:11659688-11659707 | Msa0535400:CDS | 40.0% | |
| TCCATGATTCATTTGCAACC+CGG | - | chr4_1:11659781-11659800 | Msa0535400:CDS | 40.0% | |
| AACTGTGGCTGAGTAATGAT+AGG | - | chr4_1:11659913-11659932 | Msa0535400:five_prime_UTR | 40.0% | |
| TTGGTTGGACTGAAGAAGTC+AGG | + | chr4_1:11655453-11655472 | None:intergenic | 45.0% | |
| !!! | CGGTGGTGTTTTTGGTAAGT+TGG | + | chr4_1:11655476-11655495 | None:intergenic | 45.0% |
| ! | GAATCAATCGAGTTGTGTGG+TGG | - | chr4_1:11655591-11655610 | Msa0535400:three_prime_UTR | 45.0% |
| ! | ATCAATCGAGTTGTGTGGTG+GGG | - | chr4_1:11655593-11655612 | Msa0535400:three_prime_UTR | 45.0% |
| TGCTGTTGTGAATGGTGAGA+TGG | - | chr4_1:11655654-11655673 | Msa0535400:three_prime_UTR | 45.0% | |
| TTGGCAGCTGCTAAATGAAG+AGG | + | chr4_1:11655751-11655770 | None:intergenic | 45.0% | |
| CTTCATTTAGCAGCTGCCAA+TGG | - | chr4_1:11655751-11655770 | Msa0535400:three_prime_UTR | 45.0% | |
| ATTTAGCAGCTGCCAATGGT+CGG | - | chr4_1:11655755-11655774 | Msa0535400:three_prime_UTR | 45.0% | |
| CTTCTGATTGAAGACGTGTC+TGG | - | chr4_1:11655804-11655823 | Msa0535400:three_prime_UTR | 45.0% | |
| CCAATCATATGTACCATGGC+CGG | + | chr4_1:11655855-11655874 | None:intergenic | 45.0% | |
| AGTTCCGACCCTGATACATA+TGG | + | chr4_1:11655959-11655978 | None:intergenic | 45.0% | |
| CTGCCCCTGATAGATATTGT+TGG | - | chr4_1:11655977-11655996 | Msa0535400:three_prime_UTR | 45.0% | |
| AAACAAACACACGCTTGGAC+TGG | + | chr4_1:11656498-11656517 | None:intergenic | 45.0% | |
| !! | GAAAGTGGCTCTAAGCGATT+TGG | - | chr4_1:11656930-11656949 | Msa0535400:intron | 45.0% |
| TGCTTTCGATGTTGTTGGAC+CGG | - | chr4_1:11657045-11657064 | Msa0535400:intron | 45.0% | |
| ATAAGCAGCATAGTGCAAGC+AGG | + | chr4_1:11657516-11657535 | None:intergenic | 45.0% | |
| CTTCACCTGTTGCAGATTCT+TGG | - | chr4_1:11657582-11657601 | Msa0535400:intron | 45.0% | |
| TCTTTCATGGTCCCCATCTA+TGG | - | chr4_1:11657613-11657632 | Msa0535400:CDS | 45.0% | |
| ! | GCTCTTGTTTGTGCTTCAAC+CGG | - | chr4_1:11657811-11657830 | Msa0535400:intron | 45.0% |
| CGATTATTACCCGTATCCAC+CGG | + | chr4_1:11657833-11657852 | None:intergenic | 45.0% | |
| ATATGTAGCGGTGTTCTTCC+AGG | + | chr4_1:11657940-11657959 | None:intergenic | 45.0% | |
| TGGAAGAACACCGCTACATA+TGG | - | chr4_1:11657939-11657958 | Msa0535400:intron | 45.0% | |
| AAGAACACCGCTACATATGG+CGG | - | chr4_1:11657942-11657961 | Msa0535400:intron | 45.0% | |
| GGCTTCAATTAGATTCCTCC+GGG | - | chr4_1:11658019-11658038 | Msa0535400:intron | 45.0% | |
| CTGATGAACTTTAGCGGAGA+TGG | + | chr4_1:11658676-11658695 | None:intergenic | 45.0% | |
| AGCTCGCTGATGAACTTTAG+CGG | + | chr4_1:11658682-11658701 | None:intergenic | 45.0% | |
| ! | TCAAGAAGCCAAGGCCTTAT+TGG | - | chr4_1:11658705-11658724 | Msa0535400:intron | 45.0% |
| ACGCCTTACTAGAAGCTAAC+AGG | - | chr4_1:11658731-11658750 | Msa0535400:intron | 45.0% | |
| CGCCTTACTAGAAGCTAACA+GGG | - | chr4_1:11658732-11658751 | Msa0535400:intron | 45.0% | |
| ! | CTCCCTGTTAGCTTCTAGTA+AGG | + | chr4_1:11658737-11658756 | None:intergenic | 45.0% |
| AGCTAACAGGGAGAGAGAAA+AGG | - | chr4_1:11658744-11658763 | Msa0535400:intron | 45.0% | |
| ! | TCAGAACGTAGTGGAGATGA+AGG | + | chr4_1:11658793-11658812 | None:intergenic | 45.0% |
| TGACCTCAATTGTGCACACT+TGG | + | chr4_1:11658998-11659017 | None:intergenic | 45.0% | |
| CCTCGACAAAATGGACAAAC+TGG | + | chr4_1:11659110-11659129 | None:intergenic | 45.0% | |
| ! | CCAGTTTGTCCATTTTGTCG+AGG | - | chr4_1:11659107-11659126 | Msa0535400:intron | 45.0% |
| !!! | CCTTCTTGGTTTTGTTGGAC+TGG | + | chr4_1:11659192-11659211 | None:intergenic | 45.0% |
| CCAGTCCAACAAAACCAAGA+AGG | - | chr4_1:11659189-11659208 | Msa0535400:intron | 45.0% | |
| !! | TTGTCAGCCATTGGCTCATT+CGG | - | chr4_1:11659257-11659276 | Msa0535400:intron | 45.0% |
| GTTGATGCCGAAAAGCAATG+AGG | - | chr4_1:11659308-11659327 | Msa0535400:intron | 45.0% | |
| CTTAGTGATCGTTCGGTCAA+TGG | + | chr4_1:11659454-11659473 | None:intergenic | 45.0% | |
| TCCGGGTTGCAAATGAATCA+TGG | + | chr4_1:11659785-11659804 | None:intergenic | 45.0% | |
| GTTGCTTAGATACTCTGCAC+AGG | - | chr4_1:11659886-11659905 | Msa0535400:five_prime_UTR | 45.0% | |
| CTCTGCACAGGTTATAACTG+TGG | - | chr4_1:11659898-11659917 | Msa0535400:five_prime_UTR | 45.0% | |
| ! | GGTGATCACGGTGGTGTTTT+TGG | + | chr4_1:11655484-11655503 | None:intergenic | 50.0% |
| GCACGTGAAGAAGTGATTGC+CGG | + | chr4_1:11655536-11655555 | None:intergenic | 50.0% | |
| ! | TCAATCGAGTTGTGTGGTGG+GGG | - | chr4_1:11655594-11655613 | Msa0535400:three_prime_UTR | 50.0% |
| AACTACCTCGATCCGACCAT+TGG | + | chr4_1:11655770-11655789 | None:intergenic | 50.0% | |
| ATATGTATCAGGGTCGCGAC+CGG | - | chr4_1:11655833-11655852 | Msa0535400:three_prime_UTR | 50.0% | |
| CCGGCCATGGTACATATGAT+TGG | - | chr4_1:11655852-11655871 | Msa0535400:three_prime_UTR | 50.0% | |
| GCTGTGATGCATGGAAAGAC+TGG | - | chr4_1:11657263-11657282 | Msa0535400:intron | 50.0% | |
| ! | GCATGGAAAGACTGGTTGCA+TGG | - | chr4_1:11657271-11657290 | Msa0535400:intron | 50.0% |
| ACCTTGCTGCTCGTCATAGA+CGG | - | chr4_1:11657755-11657774 | Msa0535400:intron | 50.0% | |
| CAAGAGCCCCGTTGTCTAAT+AGG | + | chr4_1:11657798-11657817 | None:intergenic | 50.0% | |
| CTTGTTTGTGCTTCAACCGG+TGG | - | chr4_1:11657814-11657833 | Msa0535400:intron | 50.0% | |
| TGTGCTTCAACCGGTGGATA+CGG | - | chr4_1:11657820-11657839 | Msa0535400:intron | 50.0% | |
| AGATGGCCAAACAAGAGGTG+CGG | + | chr4_1:11658659-11658678 | None:intergenic | 50.0% | |
| CGAGCTCAATCAAGAAGCCA+AGG | - | chr4_1:11658696-11658715 | Msa0535400:intron | 50.0% | |
| ! | GGCGTTTTCCAATAAGGCCT+TGG | + | chr4_1:11658716-11658735 | None:intergenic | 50.0% |
| CGACCAAGTGTGCACAATTG+AGG | - | chr4_1:11658992-11659011 | Msa0535400:intron | 50.0% | |
| CTTGAGGCAGCATAGTGCTA+GGG | + | chr4_1:11659054-11659073 | None:intergenic | 50.0% | |
| TCTTGAGGCAGCATAGTGCT+AGG | + | chr4_1:11659055-11659074 | None:intergenic | 50.0% | |
| TTGCAGGATCAGGCTTCTTG+AGG | + | chr4_1:11659070-11659089 | None:intergenic | 50.0% | |
| AAGAAGCCTGATCCTGCAAC+CGG | - | chr4_1:11659071-11659090 | Msa0535400:intron | 50.0% | |
| AAATGGACAAACTGGTCCGG+TGG | + | chr4_1:11659102-11659121 | None:intergenic | 50.0% | |
| AGGATGGCACCTCGACAAAA+TGG | + | chr4_1:11659119-11659138 | None:intergenic | 50.0% | |
| GATCCTTCCGAATGAGCCAA+TGG | + | chr4_1:11659267-11659286 | None:intergenic | 50.0% | |
| AGGATCGCTAGTCGCAATTC+AGG | - | chr4_1:11659281-11659300 | Msa0535400:intron | 50.0% | |
| CGCTAGTCGCAATTCAGGAA+AGG | - | chr4_1:11659286-11659305 | Msa0535400:intron | 50.0% | |
| ATCAACATACTCACGCGCCA+AGG | + | chr4_1:11659622-11659641 | None:intergenic | 50.0% | |
| TAATACGGCGGTGATCACGG+TGG | + | chr4_1:11655493-11655512 | None:intergenic | 55.0% | |
| ACCGTGATCACCGCCGTATT+AGG | - | chr4_1:11655492-11655511 | Msa0535400:three_prime_UTR | 55.0% | |
| GCCTAATACGGCGGTGATCA+CGG | + | chr4_1:11655496-11655515 | None:intergenic | 55.0% | |
| GTGATCACCGCCGTATTAGG+CGG | - | chr4_1:11655495-11655514 | Msa0535400:three_prime_UTR | 55.0% | |
| GGTCGCGACCCTGATACATA+TGG | + | chr4_1:11655834-11655853 | None:intergenic | 55.0% | |
| !! | GCTTGGACTGGCGGAAATCA+CGG | + | chr4_1:11656486-11656505 | None:intergenic | 55.0% |
| ! | CAAACACACGCTTGGACTGG+CGG | + | chr4_1:11656495-11656514 | None:intergenic | 55.0% |
| GTGCTTCAACCGGTGGATAC+GGG | - | chr4_1:11657821-11657840 | Msa0535400:intron | 55.0% | |
| ! | GTGGTTCTGTGGACTGTGTC+CGG | - | chr4_1:11657971-11657990 | Msa0535400:intron | 55.0% |
| ! | TGTCCGGATGCTGCTTGCTT+GGG | - | chr4_1:11657987-11658006 | Msa0535400:intron | 55.0% |
| TGCTTGCTTGGGGAGCAGAT+AGG | - | chr4_1:11657998-11658017 | Msa0535400:intron | 55.0% | |
| ! | ACAAGAGGTGCGGCTGATGA+GGG | + | chr4_1:11658649-11658668 | None:intergenic | 55.0% |
| ! | AACAAGAGGTGCGGCTGATG+AGG | + | chr4_1:11658650-11658669 | None:intergenic | 55.0% |
| CATCAGCCGCACCTCTTGTT+TGG | - | chr4_1:11658650-11658669 | Msa0535400:intron | 55.0% | |
| AGCGGAGATGGCCAAACAAG+AGG | + | chr4_1:11658664-11658683 | None:intergenic | 55.0% | |
| !! | CAGCCATTGGCTCATTCGGA+AGG | - | chr4_1:11659261-11659280 | Msa0535400:intron | 55.0% |
| GTGTCTGATGACACACGGCT+TGG | - | chr4_1:11659693-11659712 | Msa0535400:CDS | 55.0% | |
| AACCTGCCCACCGCGATTTC+GGG | + | chr4_1:11655372-11655391 | None:intergenic | 60.0% | |
| GAACCTGCCCACCGCGATTT+CGG | + | chr4_1:11655373-11655392 | None:intergenic | 60.0% | |
| TCCTCACGCGCCGCCTAATA+CGG | + | chr4_1:11655508-11655527 | None:intergenic | 60.0% | |
| AGCTGCCAATGGTCGGATCG+AGG | - | chr4_1:11655762-11655781 | Msa0535400:three_prime_UTR | 60.0% | |
| TGACGAGCAGCAAGGTGCAG+TGG | + | chr4_1:11657751-11657770 | None:intergenic | 60.0% | |
| GCCGTCTATGACGAGCAGCA+AGG | + | chr4_1:11657759-11657778 | None:intergenic | 60.0% | |
| CCACGAGCCGCCATATGTAG+CGG | + | chr4_1:11657952-11657971 | None:intergenic | 60.0% | |
| CTACATATGGCGGCTCGTGG+TGG | - | chr4_1:11657952-11657971 | Msa0535400:intron | 60.0% | |
| ! | GTGTCCGGATGCTGCTTGCT+TGG | - | chr4_1:11657986-11658005 | Msa0535400:intron | 60.0% |
| ! | GTCCGGATGCTGCTTGCTTG+GGG | - | chr4_1:11657988-11658007 | Msa0535400:intron | 60.0% |
| CTCCCCAAGCAAGCAGCATC+CGG | + | chr4_1:11657993-11658012 | None:intergenic | 60.0% | |
| GGCTGATGAGGGATCGAGCA+GGG | + | chr4_1:11658638-11658657 | None:intergenic | 60.0% | |
| GTGCAACCGGTTGCAGGATC+AGG | + | chr4_1:11659080-11659099 | None:intergenic | 60.0% | |
| AACTGGTCCGGTGGTGCAAC+CGG | + | chr4_1:11659093-11659112 | None:intergenic | 60.0% | |
| CGGTCAGCTGCCCGAAATCG+CGG | - | chr4_1:11655359-11655378 | Msa0535400:three_prime_UTR | 65.0% | |
| TCAGCTGCCCGAAATCGCGG+TGG | - | chr4_1:11655362-11655381 | Msa0535400:three_prime_UTR | 65.0% | |
| CAGCTGCCCGAAATCGCGGT+GGG | - | chr4_1:11655363-11655382 | Msa0535400:three_prime_UTR | 65.0% | |
| TCACGCGCCGCCTAATACGG+CGG | + | chr4_1:11655505-11655524 | None:intergenic | 65.0% | |
| GCGGCGCGTGAGGAAGTTTC+CGG | - | chr4_1:11655514-11655533 | Msa0535400:three_prime_UTR | 65.0% | |
| AGCAGCAAGGTGCAGTGGCG+TGG | + | chr4_1:11657746-11657765 | None:intergenic | 65.0% | |
| CCGCTACATATGGCGGCTCG+TGG | - | chr4_1:11657949-11657968 | Msa0535400:intron | 65.0% | |
| CGGCTGATGAGGGATCGAGC+AGG | + | chr4_1:11658639-11658658 | None:intergenic | 65.0% | |
| CCTGCAACCGGTTGCACCAC+CGG | - | chr4_1:11659083-11659102 | Msa0535400:intron | 65.0% | |
| TGCCCGAAATCGCGGTGGGC+AGG | - | chr4_1:11655367-11655386 | Msa0535400:three_prime_UTR | 70.0% | |
| GCCGTATTAGGCGGCGCGTG+AGG | - | chr4_1:11655504-11655523 | Msa0535400:three_prime_UTR | 70.0% | |
| ATCAGGGTCGCGACCGGCCA+TGG | - | chr4_1:11655839-11655858 | Msa0535400:three_prime_UTR | 70.0% | |
| ! | GGCGGCTCGTGGTGGTTCTG+TGG | - | chr4_1:11657960-11657979 | Msa0535400:intron | 70.0% |
| CCGGTGGTGCAACCGGTTGC+AGG | + | chr4_1:11659086-11659105 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 11655346 | 11660089 | 11655346 | ID=Msa0535400;Name=Msa0535400 |
| chr4_1 | mRNA | 11655346 | 11660089 | 11655346 | ID=Msa0535400-mRNA-1;Parent=Msa0535400;Name=Msa0535400-mRNA-1;_AED=0.08;_eAED=0.08;_QI=237|1|1|1|1|1|8|761|444 |
| chr4_1 | exon | 11655346 | 11656475 | 11655346 | ID=Msa0535400-mRNA-1:exon:3746;Parent=Msa0535400-mRNA-1 |
| chr4_1 | exon | 11656589 | 11656850 | 11656589 | ID=Msa0535400-mRNA-1:exon:3745;Parent=Msa0535400-mRNA-1 |
| chr4_1 | exon | 11657395 | 11657502 | 11657395 | ID=Msa0535400-mRNA-1:exon:3744;Parent=Msa0535400-mRNA-1 |
| chr4_1 | exon | 11657593 | 11657733 | 11657593 | ID=Msa0535400-mRNA-1:exon:3743;Parent=Msa0535400-mRNA-1 |
| chr4_1 | exon | 11657832 | 11657953 | 11657832 | ID=Msa0535400-mRNA-1:exon:3742;Parent=Msa0535400-mRNA-1 |
| chr4_1 | exon | 11658116 | 11658187 | 11658116 | ID=Msa0535400-mRNA-1:exon:3741;Parent=Msa0535400-mRNA-1 |
| chr4_1 | exon | 11658332 | 11658391 | 11658332 | ID=Msa0535400-mRNA-1:exon:3740;Parent=Msa0535400-mRNA-1 |
| chr4_1 | exon | 11659652 | 11660089 | 11659652 | ID=Msa0535400-mRNA-1:exon:3739;Parent=Msa0535400-mRNA-1 |
| chr4_1 | five_prime_UTR | 11659853 | 11660089 | 11659853 | ID=Msa0535400-mRNA-1:five_prime_utr;Parent=Msa0535400-mRNA-1 |
| chr4_1 | CDS | 11659652 | 11659852 | 11659652 | ID=Msa0535400-mRNA-1:cds;Parent=Msa0535400-mRNA-1 |
| chr4_1 | CDS | 11658332 | 11658391 | 11658332 | ID=Msa0535400-mRNA-1:cds;Parent=Msa0535400-mRNA-1 |
| chr4_1 | CDS | 11658116 | 11658187 | 11658116 | ID=Msa0535400-mRNA-1:cds;Parent=Msa0535400-mRNA-1 |
| chr4_1 | CDS | 11657832 | 11657953 | 11657832 | ID=Msa0535400-mRNA-1:cds;Parent=Msa0535400-mRNA-1 |
| chr4_1 | CDS | 11657593 | 11657733 | 11657593 | ID=Msa0535400-mRNA-1:cds;Parent=Msa0535400-mRNA-1 |
| chr4_1 | CDS | 11657395 | 11657502 | 11657395 | ID=Msa0535400-mRNA-1:cds;Parent=Msa0535400-mRNA-1 |
| chr4_1 | CDS | 11656589 | 11656850 | 11656589 | ID=Msa0535400-mRNA-1:cds;Parent=Msa0535400-mRNA-1 |
| chr4_1 | CDS | 11656107 | 11656475 | 11656107 | ID=Msa0535400-mRNA-1:cds;Parent=Msa0535400-mRNA-1 |
| chr4_1 | three_prime_UTR | 11655346 | 11656106 | 11655346 | ID=Msa0535400-mRNA-1:three_prime_utr;Parent=Msa0535400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
