AlfalfaGEDB | Msa1085570

M. sativa cultivar zhongmu-4 / Msa1085570

KEGG: -
GO: GO:0000302 GO:0001101 GO:0006950 GO:0006979 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0010035 GO:0010193 GO:0010224 GO:0042221 GO:0042493 GO:0046677 GO:0050896 GO:1901700
PFAM: PF05542.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1085570	XP_024629046.1	96.454	423	13	1	1	423	1	421	0.0	839

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1085570	sp\|Q9LVJ0\|UVB31_ARATH	67.680	362	108	5	64	423	67	421	1.44e-161	464

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1085570	A0A396GSD0	96.454	423	13	1	1	423	1	421	0.0	839

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002110	Msa1085570	0.857213	1.902497e-62	-8.615850e-47
Msa0003840	Msa1085570	-0.820868	5.462197e-53	-8.615850e-47
Msa0007810	Msa1085570	0.907959	2.881735e-81	-8.615850e-47
Msa0011060	Msa1085570	0.838985	2.077303e-57	-8.615850e-47
Msa0011100	Msa1085570	0.838791	2.331125e-57	-8.615850e-47
Msa0011410	Msa1085570	0.818299	2.107072e-52	-8.615850e-47
Msa0011440	Msa1085570	0.824287	8.759850e-54	-8.615850e-47
Msa0011450	Msa1085570	0.802193	6.299708e-49	-8.615850e-47
Msa0014970	Msa1085570	0.854280	1.367749e-61	-8.615850e-47
Msa0016380	Msa1085570	0.800010	1.761554e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1085570	MtrunA17_Chr8g0393251	96.454	423	13	1	1	423	1	421	0.0	839
Msa1085570	MtrunA17_Chr6g0479321	64.051	395	124	5	30	423	41	418	2.12e-165	471
Msa1085570	MtrunA17_Chr5g0410131	44.444	432	196	11	4	421	7	408	4.62e-110	330
Msa1085570	MtrunA17_Chr8g0339211	31.903	373	193	11	70	418	32	367	8.25e-52	178

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1085570	AT3G17800.1	67.680	362	108	5	64	423	67	421	1.47e-162	464
Msa1085570	AT1G48450.1	64.402	368	116	5	64	423	63	423	1.52e-162	464
Msa1085570	AT3G17800.2	67.680	362	108	5	64	423	73	427	1.79e-162	464
Msa1085570	AT1G48450.3	59.551	267	93	5	64	322	63	322	6.08e-101	304
Msa1085570	AT1G48450.2	58.672	271	97	5	64	326	63	326	6.96e-100	301
Msa1085570	AT1G32160.1	45.067	375	161	10	65	421	57	404	1.07e-98	301
Msa1085570	AT3G07310.1	35.967	367	186	10	62	423	34	356	1.36e-54	186
Msa1085570	AT5G48590.1	32.474	388	186	9	38	418	10	328	5.24e-46	162
Msa1085570	AT3G07310.2	36.879	282	133	8	147	423	11	252	6.61e-45	157

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Find 145 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTGTACAAAACAAGAT+CGG	0.632341	7_2:-86349702	None:intergenic
AAATGAAAGGAGGACAGCTC+TGG	0.495873	7_2:+86349839	Msa1085570:CDS
AAATTAGCAAACTGAGGATA+GGG	0.522002	7_2:+86350078	Msa1085570:CDS
AAATTAGCTTTGGTGGTTTA+AGG	0.185413	7_2:+86350525	Msa1085570:CDS
AACAAATGCCTTCGAACATG+TGG	0.501084	7_2:-86350651	None:intergenic
AACCACTTGGCTCTCATTCT+TGG	0.279367	7_2:+86350023	Msa1085570:CDS
AACCCCAGATGCAACTGGTA+GGG	0.592069	7_2:+86349929	Msa1085570:CDS
AACTATGTGATGTCCTTTGA+CGG	0.517188	7_2:+86350359	Msa1085570:CDS
AAGACGGCGGTGATAAGAAG+AGG	0.618730	7_2:-86349044	None:intergenic
AAGCACACAGAGGCATTGTT+TGG	0.370683	7_2:+86350440	Msa1085570:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCCTAGTCGTACAATAAAA+TGG	+	chr7_2:86348786-86348805	Msa1085570:five_prime_UTR	30.0%
CTTTCCTCCTTCTAATAATA+AGG	+	chr7_2:86349101-86349120	Msa1085570:CDS	30.0%
AGTACCTTATTATTAGAAGG+AGG	-	chr7_2:86349108-86349127	None:intergenic	30.0%
TAATAATTACCACTAGTTGC+TGG	+	chr7_2:86349201-86349220	Msa1085570:intron	30.0%
TGAAATATTGATCCATTCCT+TGG	+	chr7_2:86349341-86349360	Msa1085570:intron	30.0%
AAACCTGTACAAAACAAGAT+CGG	-	chr7_2:86349705-86349724	None:intergenic	30.0%
GACAATAGATTGATGAATTG+AGG	-	chr7_2:86349742-86349761	None:intergenic	30.0%
ATGAACAAGCAAGAAATAGT+AGG	-	chr7_2:86349764-86349783	None:intergenic	30.0%
ATTCATGGTCAAATGAAGAT+GGG	+	chr7_2:86349955-86349974	Msa1085570:CDS	30.0%
AAATTAGCAAACTGAGGATA+GGG	+	chr7_2:86350078-86350097	Msa1085570:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	86348767	86350982	86348767	ID=Msa1085570;Name=Msa1085570
chr7_2	mRNA	86348767	86350982	86348767	ID=Msa1085570-mRNA-1;Parent=Msa1085570;Name=Msa1085570-mRNA-1;_AED=0.02;_eAED=0.02;_QI=254\|1\|1\|1\|1\|1\|3\|345\|423
chr7_2	exon	86348767	86349122	86348767	ID=Msa1085570-mRNA-1:exon:23341;Parent=Msa1085570-mRNA-1
chr7_2	exon	86349371	86349720	86349371	ID=Msa1085570-mRNA-1:exon:23342;Parent=Msa1085570-mRNA-1
chr7_2	exon	86349818	86350982	86349818	ID=Msa1085570-mRNA-1:exon:23343;Parent=Msa1085570-mRNA-1
chr7_2	five_prime_UTR	86348767	86349020	86348767	ID=Msa1085570-mRNA-1:five_prime_utr;Parent=Msa1085570-mRNA-1
chr7_2	CDS	86349021	86349122	86349021	ID=Msa1085570-mRNA-1:cds;Parent=Msa1085570-mRNA-1
chr7_2	CDS	86349371	86349720	86349371	ID=Msa1085570-mRNA-1:cds;Parent=Msa1085570-mRNA-1
chr7_2	CDS	86349818	86350637	86349818	ID=Msa1085570-mRNA-1:cds;Parent=Msa1085570-mRNA-1
chr7_2	three_prime_UTR	86350638	86350982	86350638	ID=Msa1085570-mRNA-1:three_prime_utr;Parent=Msa1085570-mRNA-1

Gene Sequence

>Msa1085570

ATGGACGTGGCAGCCACAGCCGTCCTCTTCTTATCACCGCCGTCTTCTTCAATTACAACCGGATCCTGCCGCCTTCTTCACTTTCCTCCTTCTAATAATAAGGTGTGCACTTCCGTCCCCATCCCTAGGCATAAGCATGAGAGACTCTCTGTTGGAATTGCTACAAATACGATAACAAGAAGAAGAAGAAGAAGAAGAAGAAGCTTTTTAGTTAGAGCAGCAACATCCTCTTCCTCCTCGCCAGACCCAGACTCTTCTCATAAGATTGCACCTCTTCAGTTTCAGTCTCCAATCGGTCAGTTTCTTTCTCAGATTTTGATCAATCACCCCCATCTTGTGCCTGCTGCGGTGGACCAGCAACTTCTCCAGCTCCAATCTGATCGTGATGCTGCTCATCACCAACAAAACCAAGATCCTTCTCCTACAACATCCACCGATCTTGTTTTGTACAGGAGAATTGCTGAGGTCAAGGCAAATGAAAGGAGGACAGCTCTGGAAGAGATCTTGTACACATTGGTTGTGCAAAAGTTCATGGATGCTAATATTTCTTTGATACCCTCTATAACCCCAGATGCAACTGGTAGGGTCGATTCATGGTCAAATGAAGATGGGAAACTTGAGCAGCTTCACTCAAACGAAGCATATGAGATGATCCAAAACCACTTGGCTCTCATTCTTGGTAACAGAGCAGGAGATCTATCCTCCGTTGCTCAAATTAGCAAACTGAGGATAGGGCAGGTCTATGCAGCATCAGTGATGTATGGTTACTTTCTTAAGCGAGTTGACCAAAGGTTCCAGCTGGAGAAGTCGATGAAAGTTCTTACAAGTGCACCAGACGACAGTAGTATTCATCAAACTATTGTGGATGATGCAAGACCTGGTAGTGAAGTGGACACTTCCCAAGTGACATCTCATCCTGAAGTATCTACTTGGCCTGGTGGCGATGTCAGTCCTGGTGGATTTGGCTATGGTATAAAGCCGACCAGGTTGCGTAACTATGTGATGTCCTTTGACGGTGATACCCTCCAGAGATACGCAACAATAAGATCTAAGGAGGCCGTGAGCATTATTGAGAAGCACACAGAGGCATTGTTTGGAAGACCCGGAATGGTTATCACACGTGAGGGGGCAATTGATTATTCAAAGGATGAAACCATCAAAATTAGCTTTGGTGGTTTAAGGAGACTTGTTTTAGAGGCTGTGACTTTTGGTTGTTTTCTCTGGGATGTTGAGAGCTACGTGGACTCGAGGTACCATTTCGTCTTAAATTGA

Protein sequence

>Msa1085570

MDVAATAVLFLSPPSSSITTGSCRLLHFPPSNNKVCTSVPIPRHKHERLSVGIATNTITRRRRRRRRSFLVRAATSSSSSPDPDSSHKIAPLQFQSPIGQFLSQILINHPHLVPAAVDQQLLQLQSDRDAAHHQQNQDPSPTTSTDLVLYRRIAEVKANERRTALEEILYTLVVQKFMDANISLIPSITPDATGRVDSWSNEDGKLEQLHSNEAYEMIQNHLALILGNRAGDLSSVAQISKLRIGQVYAASVMYGYFLKRVDQRFQLEKSMKVLTSAPDDSSIHQTIVDDARPGSEVDTSQVTSHPEVSTWPGGDVSPGGFGYGIKPTRLRNYVMSFDGDTLQRYATIRSKEAVSIIEKHTEALFGRPGMVITREGAIDYSKDETIKISFGGLRRLVLEAVTFGCFLWDVESYVDSRYHFVLN*