AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1085570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1085570 MtrunA17_Chr8g0393251 96.454 423 13 1 1 423 1 421 0.0 839
Msa1085570 MtrunA17_Chr6g0479321 64.051 395 124 5 30 423 41 418 2.12e-165 471
Msa1085570 MtrunA17_Chr5g0410131 44.444 432 196 11 4 421 7 408 4.62e-110 330
Msa1085570 MtrunA17_Chr8g0339211 31.903 373 193 11 70 418 32 367 8.25e-52 178
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1085570 AT3G17800.1 67.680 362 108 5 64 423 67 421 1.47e-162 464
Msa1085570 AT1G48450.1 64.402 368 116 5 64 423 63 423 1.52e-162 464
Msa1085570 AT3G17800.2 67.680 362 108 5 64 423 73 427 1.79e-162 464
Msa1085570 AT1G48450.3 59.551 267 93 5 64 322 63 322 6.08e-101 304
Msa1085570 AT1G48450.2 58.672 271 97 5 64 326 63 326 6.96e-100 301
Msa1085570 AT1G32160.1 45.067 375 161 10 65 421 57 404 1.07e-98 301
Msa1085570 AT3G07310.1 35.967 367 186 10 62 423 34 356 1.36e-54 186
Msa1085570 AT5G48590.1 32.474 388 186 9 38 418 10 328 5.24e-46 162
Msa1085570 AT3G07310.2 36.879 282 133 8 147 423 11 252 6.61e-45 157

Find 145 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTAGCTTTGGTGGTTTA+AGG 0.185413 7_2:+86350525 Msa1085570:CDS
CTTTCCTCCTTCTAATAATA+AGG 0.195362 7_2:+86349101 Msa1085570:CDS
TTTATATTAAATTAAAATAT+TGG 0.208543 7_2:+86348862 Msa1085570:five_prime_UTR
TTCCTAGTCGTACAATAAAA+TGG 0.229512 7_2:+86348786 Msa1085570:five_prime_UTR
GAATGAGAGCCAAGTGGTTT+TGG 0.255570 7_2:-86350019 None:intergenic
GATGGATTCTTGTTTGGATT+TGG 0.269044 7_2:-86348957 None:intergenic
AACCACTTGGCTCTCATTCT+TGG 0.279367 7_2:+86350023 Msa1085570:CDS
ATAAATTAATTAATAATAAC+TGG 0.295699 7_2:-86350768 None:intergenic
CTCACGTGTGATAACCATTC+CGG 0.313242 7_2:-86350468 None:intergenic
GATAGTACCTTATTATTAGA+AGG 0.339689 7_2:-86349108 None:intergenic
GAAATGGATGGATTCTTGTT+TGG 0.341565 7_2:-86348963 None:intergenic
ATCTTATTGTTGCGTATCTC+TGG 0.348662 7_2:-86350391 None:intergenic
AAGCACACAGAGGCATTGTT+TGG 0.370683 7_2:+86350440 Msa1085570:CDS
TCGACCCTACCAGTTGCATC+TGG 0.375048 7_2:-86349933 None:intergenic
ACTTCTCCAGCTGGAACCTT+TGG 0.389283 7_2:-86350151 None:intergenic
GCAATCTTATGAGAAGAGTC+TGG 0.407257 7_2:-86349515 None:intergenic
GAAACCATCAAAATTAGCTT+TGG 0.409557 7_2:+86350515 Msa1085570:CDS
ATACGCAACAATAAGATCTA+AGG 0.415923 7_2:+86350397 Msa1085570:CDS
GATGTCAGTCCTGGTGGATT+TGG 0.419214 7_2:+86350308 Msa1085570:CDS
ATTGGTTGTGCAAAAGTTCA+TGG 0.419257 7_2:+86349878 Msa1085570:CDS
ACCATCAAAATTAGCTTTGG+TGG 0.419551 7_2:+86350518 Msa1085570:CDS
AATAAATAGATATGAATAGT+AGG 0.427310 7_2:+86348824 Msa1085570:five_prime_UTR
TAATATAAATAAATAATTCT+CGG 0.427467 7_2:-86348848 None:intergenic
CGAGCAGATGAACGAAGAAA+TGG 0.431902 7_2:-86348979 None:intergenic
ATGTTGTAGGAGAAGGATCT+TGG 0.432474 7_2:-86349676 None:intergenic
AATATAAATAAATAATTCTC+GGG 0.437419 7_2:-86348847 None:intergenic
CCACCGCAGCAGGCACAAGA+TGG 0.439006 7_2:-86349598 None:intergenic
CCAGGCCAAGTAGATACTTC+AGG 0.441052 7_2:-86350281 None:intergenic
CAACTCAATTTAAGACGAAA+TGG 0.445619 7_2:-86350619 None:intergenic
AGTTGCTGGTCCACCGCAGC+AGG 0.446973 7_2:-86349608 None:intergenic
GTGAAGAAGGCGGCAGGATC+CGG 0.448164 7_2:-86349079 None:intergenic
CCATCTTGTGCCTGCTGCGG+TGG 0.450747 7_2:+86349598 Msa1085570:CDS
CTCATCCTGAAGTATCTACT+TGG 0.453032 7_2:+86350276 Msa1085570:CDS
TCACGTGTGATAACCATTCC+GGG 0.453796 7_2:-86350467 None:intergenic
ATTCTTGTTTGGATTTGGAT+TGG 0.458363 7_2:-86348952 None:intergenic
ACAAGATCGGTGGATGTTGT+AGG 0.463443 7_2:-86349689 None:intergenic
TCATGCTTATGCCTAGGGAT+GGG 0.466457 7_2:-86349386 None:intergenic
CAGGAGAATTGCTGAGGTCA+AGG 0.467848 7_2:+86349815 Msa1085570:intron
CCGTCTTCTTCAATTACAAC+CGG 0.472072 7_2:+86349060 Msa1085570:CDS
CTTCAGGATGAGATGTCACT+TGG 0.474439 7_2:-86350265 None:intergenic
ATTGGAGCTGGAGAAGTTGC+TGG 0.477347 7_2:-86349622 None:intergenic
TAGAAGGAGGAAAGTGAAGA+AGG 0.482490 7_2:-86349092 None:intergenic
CATGCTTATGCCTAGGGATG+GGG 0.483080 7_2:-86349385 None:intergenic
AGTTGCATCTGGGGTTATAG+AGG 0.486143 7_2:-86349922 None:intergenic
TATTAAATTAAAATATTGGA+GGG 0.487155 7_2:+86348866 Msa1085570:five_prime_UTR
CACCGCAGCAGGCACAAGAT+GGG 0.488056 7_2:-86349597 None:intergenic
TGGGTCTGGCGAGGAGGAAG+AGG 0.490825 7_2:-86349495 None:intergenic
GATTCATGGTCAAATGAAGA+TGG 0.491027 7_2:+86349954 Msa1085570:CDS
CTCATGCTTATGCCTAGGGA+TGG 0.491888 7_2:-86349387 None:intergenic
CTCATTCTTGGTAACAGAGC+AGG 0.493044 7_2:+86350035 Msa1085570:CDS
AAATGAAAGGAGGACAGCTC+TGG 0.495873 7_2:+86349839 Msa1085570:CDS
TCTATAACCCCAGATGCAAC+TGG 0.497553 7_2:+86349924 Msa1085570:CDS
CAACTGGTAGGGTCGATTCA+TGG 0.499248 7_2:+86349940 Msa1085570:CDS
AACAAATGCCTTCGAACATG+TGG 0.501084 7_2:-86350651 None:intergenic
CGACCCTACCAGTTGCATCT+GGG 0.501121 7_2:-86349932 None:intergenic
CCTGGTGGCGATGTCAGTCC+TGG 0.502730 7_2:+86350299 Msa1085570:CDS
CCTGAAGTATCTACTTGGCC+TGG 0.503117 7_2:+86350281 Msa1085570:CDS
CAAATTAGCAAACTGAGGAT+AGG 0.505986 7_2:+86350077 Msa1085570:CDS
TTATGAGAAGAGTCTGGGTC+TGG 0.513057 7_2:-86349509 None:intergenic
AACTATGTGATGTCCTTTGA+CGG 0.517188 7_2:+86350359 Msa1085570:CDS
GTCTCTCATGCTTATGCCTA+GGG 0.517855 7_2:-86349391 None:intergenic
AAATTAGCAAACTGAGGATA+GGG 0.522002 7_2:+86350078 Msa1085570:CDS
GAGCAGCATCACGATCAGAT+TGG 0.523258 7_2:-86349640 None:intergenic
TGAGAAAGAAACTGACCGAT+TGG 0.524356 7_2:-86349557 None:intergenic
CTTCAGTTTCAGTCTCCAAT+CGG 0.525591 7_2:+86349542 Msa1085570:CDS
AGGAAAGTGAAGAAGGCGGC+AGG 0.526126 7_2:-86349085 None:intergenic
ACCGCAGCAGGCACAAGATG+GGG 0.529440 7_2:-86349596 None:intergenic
CATCACGATCAGATTGGAGC+TGG 0.529818 7_2:-86349634 None:intergenic
ATATTAAATTAAAATATTGG+AGG 0.531207 7_2:+86348865 Msa1085570:five_prime_UTR
TATGCAGCATCAGTGATGTA+TGG 0.532897 7_2:+86350107 Msa1085570:CDS
CAGTTTGCTAATTTGAGCAA+CGG 0.532928 7_2:-86350069 None:intergenic
CTGGAGGGTATCACCGTCAA+AGG 0.539393 7_2:-86350372 None:intergenic
GAAGTGTCCACTTCACTACC+AGG 0.539689 7_2:-86350242 None:intergenic
AGTCTCTCATGCTTATGCCT+AGG 0.540729 7_2:-86349392 None:intergenic
GCACTTCCGTCCCCATCCCT+AGG 0.541488 7_2:+86349375 Msa1085570:CDS
AGTCCTGGTGGATTTGGCTA+TGG 0.543579 7_2:+86350314 Msa1085570:CDS
TGATGAATACTACTGTCGTC+TGG 0.547484 7_2:-86350197 None:intergenic
TTATTGTTGCGTATCTCTGG+AGG 0.549788 7_2:-86350388 None:intergenic
CTGTGGCTGCCACGTCCATA+CGG 0.555378 7_2:-86349017 None:intergenic
CCAGGACTGACATCGCCACC+AGG 0.556642 7_2:-86350299 None:intergenic
ATTGTTTGGAAGACCCGGAA+TGG 0.558540 7_2:+86350454 Msa1085570:CDS
AGTTGACCAAAGGTTCCAGC+TGG 0.559976 7_2:+86350145 Msa1085570:CDS
ATTCATGGTCAAATGAAGAT+GGG 0.560883 7_2:+86349955 Msa1085570:CDS
TTCTTAAGCGAGTTGACCAA+AGG 0.564871 7_2:+86350135 Msa1085570:CDS
CTTTCATCGACTTCTCCAGC+TGG 0.565573 7_2:-86350160 None:intergenic
CAATCTTATGAGAAGAGTCT+GGG 0.567804 7_2:-86349514 None:intergenic
AAGCATGAGAGACTCTCTGT+TGG 0.570763 7_2:+86349401 Msa1085570:CDS
GAGGCATTGTTTGGAAGACC+CGG 0.570792 7_2:+86350449 Msa1085570:CDS
CTAACCTAGCCGTATGGACG+TGG 0.574142 7_2:+86349008 Msa1085570:exon
TCGGTGGATGTTGTAGGAGA+AGG 0.576997 7_2:-86349683 None:intergenic
TGATAAGAAGAGGACGGCTG+TGG 0.580594 7_2:-86349034 None:intergenic
CATCACATAGTTACGCAACC+TGG 0.581846 7_2:-86350348 None:intergenic
TAGTATTCATCAAACTATTG+TGG 0.584247 7_2:+86350208 Msa1085570:CDS
GTAAAAGTTTCTTACTACTG+TGG 0.587181 7_2:+86350940 Msa1085570:three_prime_UTR
TAGCAAACTGAGGATAGGGC+AGG 0.587895 7_2:+86350082 Msa1085570:CDS
ATTAAATTAAAATATTGGAG+GGG 0.588881 7_2:+86348867 Msa1085570:five_prime_UTR
GACCCTACCAGTTGCATCTG+GGG 0.591341 7_2:-86349931 None:intergenic
AACCCCAGATGCAACTGGTA+GGG 0.592069 7_2:+86349929 Msa1085570:CDS
AGAGTCTGGGTCTGGCGAGG+AGG 0.592281 7_2:-86349501 None:intergenic
TAACCCCAGATGCAACTGGT+AGG 0.592551 7_2:+86349928 Msa1085570:CDS
TCTAGTCTAACCTAGCCGTA+TGG 0.592574 7_2:+86349002 Msa1085570:exon
GTGCTTCTCAATAATGCTCA+CGG 0.595139 7_2:-86350423 None:intergenic
TATTGTTGCGTATCTCTGGA+GGG 0.599151 7_2:-86350387 None:intergenic
GGAAGAGATCTTGTACACAT+TGG 0.602232 7_2:+86349860 Msa1085570:CDS
GCATCCTCCCACATGTTCGA+AGG 0.608809 7_2:+86350643 Msa1085570:three_prime_UTR
AGTACCTTATTATTAGAAGG+AGG 0.610361 7_2:-86349105 None:intergenic
CCGCAGCAGGCACAAGATGG+GGG 0.617352 7_2:-86349595 None:intergenic
AAGACGGCGGTGATAAGAAG+AGG 0.618730 7_2:-86349044 None:intergenic
AATGGTTATCACACGTGAGG+GGG 0.623377 7_2:+86350472 Msa1085570:CDS
CGCAACAATAAGATCTAAGG+AGG 0.623407 7_2:+86350400 Msa1085570:CDS
AGAAGAGTCTGGGTCTGGCG+AGG 0.623678 7_2:-86349504 None:intergenic
ATACCATAGCCAAATCCACC+AGG 0.624211 7_2:-86350317 None:intergenic
GCTGCCACGTCCATACGGCT+AGG 0.625385 7_2:-86349012 None:intergenic
GGAATGGTTATCACACGTGA+GGG 0.627905 7_2:+86350470 Msa1085570:CDS
GTTGCATCTGGGGTTATAGA+GGG 0.629178 7_2:-86349921 None:intergenic
CCTGTACAAAACAAGATCGG+TGG 0.629414 7_2:-86349699 None:intergenic
TTTGCTAATTTGAGCAACGG+AGG 0.631175 7_2:-86350066 None:intergenic
AAACCTGTACAAAACAAGAT+CGG 0.632341 7_2:-86349702 None:intergenic
ATTGGAGACTGAAACTGAAG+AGG 0.632400 7_2:-86349539 None:intergenic
GGTGGCGATGTCAGTCCTGG+TGG 0.636075 7_2:+86350302 Msa1085570:CDS
TTCAGGATGAGATGTCACTT+GGG 0.636764 7_2:-86350264 None:intergenic
CGGAATGGTTATCACACGTG+AGG 0.638347 7_2:+86350469 Msa1085570:CDS
TGAGATGATCCAAAACCACT+TGG 0.639402 7_2:+86350010 Msa1085570:CDS
CTGAGGTCAAGGCAAATGAA+AGG 0.640671 7_2:+86349826 Msa1085570:CDS
ACAAATGCCTTCGAACATGT+GGG 0.641653 7_2:-86350650 None:intergenic
GCTATGGTATAAAGCCGACC+AGG 0.641906 7_2:+86350330 Msa1085570:CDS
TGCAAGACCTGGTAGTGAAG+TGG 0.643713 7_2:+86350235 Msa1085570:CDS
TTGAGAGCTACGTGGACTCG+AGG 0.645363 7_2:+86350594 Msa1085570:CDS
CCGGTTGTAATTGAAGAAGA+CGG 0.652339 7_2:-86349060 None:intergenic
GAAGTATCTACTTGGCCTGG+TGG 0.652940 7_2:+86350284 Msa1085570:CDS
CTAGTCGTACAATAAAATGG+AGG 0.659838 7_2:+86348789 Msa1085570:five_prime_UTR
CAGATGAACGAAGAAATGGA+TGG 0.660221 7_2:-86348975 None:intergenic
GAATGGTTATCACACGTGAG+GGG 0.665737 7_2:+86350471 Msa1085570:CDS
ACATAGTTACGCAACCTGGT+CGG 0.667626 7_2:-86350344 None:intergenic
TACCAAGAATGAGAGCCAAG+TGG 0.671508 7_2:-86350025 None:intergenic
CTTATGCCTAGGGATGGGGA+CGG 0.676237 7_2:-86349381 None:intergenic
CTGGGATGTTGAGAGCTACG+TGG 0.676347 7_2:+86350586 Msa1085570:CDS
CGGCGGTGATAAGAAGAGGA+CGG 0.676881 7_2:-86349040 None:intergenic
AGGTCAAGGCAAATGAAAGG+AGG 0.687801 7_2:+86349829 Msa1085570:CDS
ATTGTGGATGATGCAAGACC+TGG 0.688318 7_2:+86350224 Msa1085570:CDS
AATGCCTTCGAACATGTGGG+AGG 0.688992 7_2:-86350647 None:intergenic
TTGCTCAAATTAGCAAACTG+AGG 0.691447 7_2:+86350072 Msa1085570:CDS
AAGGAGGAAAGTGAAGAAGG+CGG 0.701835 7_2:-86349089 None:intergenic
CATTATTGAGAAGCACACAG+AGG 0.764856 7_2:+86350430 Msa1085570:CDS
GTTGTAATTGAAGAAGACGG+CGG 0.772972 7_2:-86349057 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATATTAAATTAAAATAT+TGG + chr7_2:86348862-86348881 Msa1085570:five_prime_UTR 0.0%
!! TTTATATTAAATTAAAATAT+TGG + chr7_2:86348862-86348881 Msa1085570:five_prime_UTR 0.0%
!! AATATAAATAAATAATTCTC+GGG - chr7_2:86348850-86348869 None:intergenic 10.0%
!! ATATTAAATTAAAATATTGG+AGG + chr7_2:86348865-86348884 Msa1085570:five_prime_UTR 10.0%
!! TATTAAATTAAAATATTGGA+GGG + chr7_2:86348866-86348885 Msa1085570:five_prime_UTR 10.0%
!! AATATAAATAAATAATTCTC+GGG - chr7_2:86348850-86348869 None:intergenic 10.0%
!! ATATTAAATTAAAATATTGG+AGG + chr7_2:86348865-86348884 Msa1085570:five_prime_UTR 10.0%
!! TATTAAATTAAAATATTGGA+GGG + chr7_2:86348866-86348885 Msa1085570:five_prime_UTR 10.0%
!! AATAAATAGATATGAATAGT+AGG + chr7_2:86348824-86348843 Msa1085570:five_prime_UTR 15.0%
!! ATTAAATTAAAATATTGGAG+GGG + chr7_2:86348867-86348886 Msa1085570:five_prime_UTR 15.0%
!! AATAAATAGATATGAATAGT+AGG + chr7_2:86348824-86348843 Msa1085570:five_prime_UTR 15.0%
!! ATTAAATTAAAATATTGGAG+GGG + chr7_2:86348867-86348886 Msa1085570:five_prime_UTR 15.0%
!! AAATTGCAAGATATTATACA+GGG - chr7_2:86349291-86349310 None:intergenic 20.0%
!! TAAATTGCAAGATATTATAC+AGG - chr7_2:86349292-86349311 None:intergenic 20.0%
!!! CTTTTTCTTCAAAAAAAAAC+TGG - chr7_2:86350737-86350756 None:intergenic 20.0%
!! GAAGAAAATAAATGAATGTT+CGG - chr7_2:86348769-86348788 None:intergenic 20.0%
!! AAATTGCAAGATATTATACA+GGG - chr7_2:86349291-86349310 None:intergenic 20.0%
!! TAAATTGCAAGATATTATAC+AGG - chr7_2:86349292-86349311 None:intergenic 20.0%
!!! CTTTTTCTTCAAAAAAAAAC+TGG - chr7_2:86350737-86350756 None:intergenic 20.0%
!! TTTTTACTTTACAAGCGTAA+CGG - chr7_2:86348918-86348937 None:intergenic 25.0%
! GATAGTACCTTATTATTAGA+AGG - chr7_2:86349111-86349130 None:intergenic 25.0%
! TCATATATTCTGTTTGTTTG+TGG - chr7_2:86349324-86349343 None:intergenic 25.0%
! TAGTATTCATCAAACTATTG+TGG + chr7_2:86350208-86350227 Msa1085570:CDS 25.0%
!! TTTTTACTTTACAAGCGTAA+CGG - chr7_2:86348918-86348937 None:intergenic 25.0%
! GATAGTACCTTATTATTAGA+AGG - chr7_2:86349111-86349130 None:intergenic 25.0%
! TCATATATTCTGTTTGTTTG+TGG - chr7_2:86349324-86349343 None:intergenic 25.0%
! TAGTATTCATCAAACTATTG+TGG + chr7_2:86350208-86350227 Msa1085570:CDS 25.0%
TTCCTAGTCGTACAATAAAA+TGG + chr7_2:86348786-86348805 Msa1085570:five_prime_UTR 30.0%
! TTTTACTTTACAAGCGTAAC+GGG - chr7_2:86348917-86348936 None:intergenic 30.0%
! ATTCTTGTTTGGATTTGGAT+TGG - chr7_2:86348955-86348974 None:intergenic 30.0%
CTTTCCTCCTTCTAATAATA+AGG + chr7_2:86349101-86349120 Msa1085570:CDS 30.0%
AGTACCTTATTATTAGAAGG+AGG - chr7_2:86349108-86349127 None:intergenic 30.0%
TAATAATTACCACTAGTTGC+TGG + chr7_2:86349201-86349220 Msa1085570:intron 30.0%
!! ACCAAACTAATGCTTTGTTT+AGG + chr7_2:86349231-86349250 Msa1085570:intron 30.0%
! ACCTAAACAAAGCATTAGTT+TGG - chr7_2:86349235-86349254 None:intergenic 30.0%
TGAAATATTGATCCATTCCT+TGG + chr7_2:86349341-86349360 Msa1085570:intron 30.0%
AAACCTGTACAAAACAAGAT+CGG - chr7_2:86349705-86349724 None:intergenic 30.0%
GACAATAGATTGATGAATTG+AGG - chr7_2:86349742-86349761 None:intergenic 30.0%
ATGAACAAGCAAGAAATAGT+AGG - chr7_2:86349764-86349783 None:intergenic 30.0%
!! ACTATCTTCTCAACTTTTTC+AGG + chr7_2:86349796-86349815 Msa1085570:intron 30.0%
ATTCATGGTCAAATGAAGAT+GGG + chr7_2:86349955-86349974 Msa1085570:CDS 30.0%
AAATTAGCAAACTGAGGATA+GGG + chr7_2:86350078-86350097 Msa1085570:CDS 30.0%
ATACGCAACAATAAGATCTA+AGG + chr7_2:86350397-86350416 Msa1085570:CDS 30.0%
! GAAACCATCAAAATTAGCTT+TGG + chr7_2:86350515-86350534 Msa1085570:CDS 30.0%
!! AAATTAGCTTTGGTGGTTTA+AGG + chr7_2:86350525-86350544 Msa1085570:CDS 30.0%
!!! TTTAAGGAGACTTGTTTTAG+AGG + chr7_2:86350541-86350560 Msa1085570:CDS 30.0%
! CAACTCAATTTAAGACGAAA+TGG - chr7_2:86350622-86350641 None:intergenic 30.0%
! GACTATAATGAGTTTTTGCT+GGG - chr7_2:86350889-86350908 None:intergenic 30.0%
! TGACTATAATGAGTTTTTGC+TGG - chr7_2:86350890-86350909 None:intergenic 30.0%
GTAAAAGTTTCTTACTACTG+TGG + chr7_2:86350940-86350959 Msa1085570:three_prime_UTR 30.0%
TTCCTAGTCGTACAATAAAA+TGG + chr7_2:86348786-86348805 Msa1085570:five_prime_UTR 30.0%
! TTTTACTTTACAAGCGTAAC+GGG - chr7_2:86348917-86348936 None:intergenic 30.0%
! ATTCTTGTTTGGATTTGGAT+TGG - chr7_2:86348955-86348974 None:intergenic 30.0%
CTTTCCTCCTTCTAATAATA+AGG + chr7_2:86349101-86349120 Msa1085570:CDS 30.0%
AGTACCTTATTATTAGAAGG+AGG - chr7_2:86349108-86349127 None:intergenic 30.0%
TAATAATTACCACTAGTTGC+TGG + chr7_2:86349201-86349220 Msa1085570:intron 30.0%
!! ACCAAACTAATGCTTTGTTT+AGG + chr7_2:86349231-86349250 Msa1085570:intron 30.0%
! ACCTAAACAAAGCATTAGTT+TGG - chr7_2:86349235-86349254 None:intergenic 30.0%
TGAAATATTGATCCATTCCT+TGG + chr7_2:86349341-86349360 Msa1085570:intron 30.0%
AAACCTGTACAAAACAAGAT+CGG - chr7_2:86349705-86349724 None:intergenic 30.0%
GACAATAGATTGATGAATTG+AGG - chr7_2:86349742-86349761 None:intergenic 30.0%
ATGAACAAGCAAGAAATAGT+AGG - chr7_2:86349764-86349783 None:intergenic 30.0%
!! ACTATCTTCTCAACTTTTTC+AGG + chr7_2:86349796-86349815 Msa1085570:intron 30.0%
ATTCATGGTCAAATGAAGAT+GGG + chr7_2:86349955-86349974 Msa1085570:CDS 30.0%
AAATTAGCAAACTGAGGATA+GGG + chr7_2:86350078-86350097 Msa1085570:CDS 30.0%
ATACGCAACAATAAGATCTA+AGG + chr7_2:86350397-86350416 Msa1085570:CDS 30.0%
! GAAACCATCAAAATTAGCTT+TGG + chr7_2:86350515-86350534 Msa1085570:CDS 30.0%
!! AAATTAGCTTTGGTGGTTTA+AGG + chr7_2:86350525-86350544 Msa1085570:CDS 30.0%
!!! TTTAAGGAGACTTGTTTTAG+AGG + chr7_2:86350541-86350560 Msa1085570:CDS 30.0%
! CAACTCAATTTAAGACGAAA+TGG - chr7_2:86350622-86350641 None:intergenic 30.0%
! GACTATAATGAGTTTTTGCT+GGG - chr7_2:86350889-86350908 None:intergenic 30.0%
! TGACTATAATGAGTTTTTGC+TGG - chr7_2:86350890-86350909 None:intergenic 30.0%
GTAAAAGTTTCTTACTACTG+TGG + chr7_2:86350940-86350959 Msa1085570:three_prime_UTR 30.0%
! CTCCATTTTATTGTACGACT+AGG - chr7_2:86348791-86348810 None:intergenic 35.0%
CTAGTCGTACAATAAAATGG+AGG + chr7_2:86348789-86348808 Msa1085570:five_prime_UTR 35.0%
! GATGGATTCTTGTTTGGATT+TGG - chr7_2:86348960-86348979 None:intergenic 35.0%
! GAAATGGATGGATTCTTGTT+TGG - chr7_2:86348966-86348985 None:intergenic 35.0%
ATATTGATCCATTCCTTGGT+TGG + chr7_2:86349345-86349364 Msa1085570:intron 35.0%
CAATCTTATGAGAAGAGTCT+GGG - chr7_2:86349517-86349536 None:intergenic 35.0%
GATGAATTGAGGTGAAAGAA+TGG - chr7_2:86349731-86349750 None:intergenic 35.0%
AAGTTGAGAAGATAGTGCAA+TGG - chr7_2:86349792-86349811 None:intergenic 35.0%
ATTGGTTGTGCAAAAGTTCA+TGG + chr7_2:86349878-86349897 Msa1085570:CDS 35.0%
GATTCATGGTCAAATGAAGA+TGG + chr7_2:86349954-86349973 Msa1085570:CDS 35.0%
!! CAGTTTGCTAATTTGAGCAA+CGG - chr7_2:86350072-86350091 None:intergenic 35.0%
TTGCTCAAATTAGCAAACTG+AGG + chr7_2:86350072-86350091 Msa1085570:CDS 35.0%
CAAATTAGCAAACTGAGGAT+AGG + chr7_2:86350077-86350096 Msa1085570:CDS 35.0%
AACTATGTGATGTCCTTTGA+CGG + chr7_2:86350359-86350378 Msa1085570:CDS 35.0%
ATCTTATTGTTGCGTATCTC+TGG - chr7_2:86350394-86350413 None:intergenic 35.0%
!! ACCATCAAAATTAGCTTTGG+TGG + chr7_2:86350518-86350537 Msa1085570:CDS 35.0%
! ACCACCAAAGCTAATTTTGA+TGG - chr7_2:86350522-86350541 None:intergenic 35.0%
!! TGACTTTTGGTTGTTTTCTC+TGG + chr7_2:86350567-86350586 Msa1085570:CDS 35.0%
!! GACTTTTGGTTGTTTTCTCT+GGG + chr7_2:86350568-86350587 Msa1085570:CDS 35.0%
!! AGGCATTTGTTTTCGTATGT+TGG + chr7_2:86350663-86350682 Msa1085570:three_prime_UTR 35.0%
! CTCCATTTTATTGTACGACT+AGG - chr7_2:86348791-86348810 None:intergenic 35.0%
CTAGTCGTACAATAAAATGG+AGG + chr7_2:86348789-86348808 Msa1085570:five_prime_UTR 35.0%
! GATGGATTCTTGTTTGGATT+TGG - chr7_2:86348960-86348979 None:intergenic 35.0%
! GAAATGGATGGATTCTTGTT+TGG - chr7_2:86348966-86348985 None:intergenic 35.0%
ATATTGATCCATTCCTTGGT+TGG + chr7_2:86349345-86349364 Msa1085570:intron 35.0%
CAATCTTATGAGAAGAGTCT+GGG - chr7_2:86349517-86349536 None:intergenic 35.0%
GATGAATTGAGGTGAAAGAA+TGG - chr7_2:86349731-86349750 None:intergenic 35.0%
AAGTTGAGAAGATAGTGCAA+TGG - chr7_2:86349792-86349811 None:intergenic 35.0%
ATTGGTTGTGCAAAAGTTCA+TGG + chr7_2:86349878-86349897 Msa1085570:CDS 35.0%
GATTCATGGTCAAATGAAGA+TGG + chr7_2:86349954-86349973 Msa1085570:CDS 35.0%
!! CAGTTTGCTAATTTGAGCAA+CGG - chr7_2:86350072-86350091 None:intergenic 35.0%
TTGCTCAAATTAGCAAACTG+AGG + chr7_2:86350072-86350091 Msa1085570:CDS 35.0%
CAAATTAGCAAACTGAGGAT+AGG + chr7_2:86350077-86350096 Msa1085570:CDS 35.0%
AACTATGTGATGTCCTTTGA+CGG + chr7_2:86350359-86350378 Msa1085570:CDS 35.0%
ATCTTATTGTTGCGTATCTC+TGG - chr7_2:86350394-86350413 None:intergenic 35.0%
!! ACCATCAAAATTAGCTTTGG+TGG + chr7_2:86350518-86350537 Msa1085570:CDS 35.0%
! ACCACCAAAGCTAATTTTGA+TGG - chr7_2:86350522-86350541 None:intergenic 35.0%
!! TGACTTTTGGTTGTTTTCTC+TGG + chr7_2:86350567-86350586 Msa1085570:CDS 35.0%
!! GACTTTTGGTTGTTTTCTCT+GGG + chr7_2:86350568-86350587 Msa1085570:CDS 35.0%
!! AGGCATTTGTTTTCGTATGT+TGG + chr7_2:86350663-86350682 Msa1085570:three_prime_UTR 35.0%
CAGATGAACGAAGAAATGGA+TGG - chr7_2:86348978-86348997 None:intergenic 40.0%
GTTGTAATTGAAGAAGACGG+CGG - chr7_2:86349060-86349079 None:intergenic 40.0%
CCGGTTGTAATTGAAGAAGA+CGG - chr7_2:86349063-86349082 None:intergenic 40.0%
CCGTCTTCTTCAATTACAAC+CGG + chr7_2:86349060-86349079 Msa1085570:CDS 40.0%
TAGAAGGAGGAAAGTGAAGA+AGG - chr7_2:86349095-86349114 None:intergenic 40.0%
GTTGTAATTCCAGCAACTAG+TGG - chr7_2:86349213-86349232 None:intergenic 40.0%
GCAATCTTATGAGAAGAGTC+TGG - chr7_2:86349518-86349537 None:intergenic 40.0%
ATTGGAGACTGAAACTGAAG+AGG - chr7_2:86349542-86349561 None:intergenic 40.0%
CTTCAGTTTCAGTCTCCAAT+CGG + chr7_2:86349542-86349561 Msa1085570:CDS 40.0%
TGAGAAAGAAACTGACCGAT+TGG - chr7_2:86349560-86349579 None:intergenic 40.0%
!!! GAGAAGGATCTTGGTTTTGT+TGG - chr7_2:86349670-86349689 None:intergenic 40.0%
ATGTTGTAGGAGAAGGATCT+TGG - chr7_2:86349679-86349698 None:intergenic 40.0%
!!! CTTTTTCAGGAGAATTGCTG+AGG + chr7_2:86349809-86349828 Msa1085570:intron 40.0%
GGAAGAGATCTTGTACACAT+TGG + chr7_2:86349860-86349879 Msa1085570:CDS 40.0%
TGAGATGATCCAAAACCACT+TGG + chr7_2:86350010-86350029 Msa1085570:CDS 40.0%
TTTGCTAATTTGAGCAACGG+AGG - chr7_2:86350069-86350088 None:intergenic 40.0%
TATGCAGCATCAGTGATGTA+TGG + chr7_2:86350107-86350126 Msa1085570:CDS 40.0%
! TTCTTAAGCGAGTTGACCAA+AGG + chr7_2:86350135-86350154 Msa1085570:CDS 40.0%
TGATGAATACTACTGTCGTC+TGG - chr7_2:86350200-86350219 None:intergenic 40.0%
! TTCAGGATGAGATGTCACTT+GGG - chr7_2:86350267-86350286 None:intergenic 40.0%
! CTCATCCTGAAGTATCTACT+TGG + chr7_2:86350276-86350295 Msa1085570:CDS 40.0%
TATTGTTGCGTATCTCTGGA+GGG - chr7_2:86350390-86350409 None:intergenic 40.0%
TTATTGTTGCGTATCTCTGG+AGG - chr7_2:86350391-86350410 None:intergenic 40.0%
CGCAACAATAAGATCTAAGG+AGG + chr7_2:86350400-86350419 Msa1085570:CDS 40.0%
GTGCTTCTCAATAATGCTCA+CGG - chr7_2:86350426-86350445 None:intergenic 40.0%
! CATTATTGAGAAGCACACAG+AGG + chr7_2:86350430-86350449 Msa1085570:CDS 40.0%
GGGGGCAATTGATTATTCAA+AGG + chr7_2:86350490-86350509 Msa1085570:CDS 40.0%
!!! GTTTTAGAGGCTGTGACTTT+TGG + chr7_2:86350554-86350573 Msa1085570:CDS 40.0%
ACAAATGCCTTCGAACATGT+GGG - chr7_2:86350653-86350672 None:intergenic 40.0%
AACAAATGCCTTCGAACATG+TGG - chr7_2:86350654-86350673 None:intergenic 40.0%
CAGATGAACGAAGAAATGGA+TGG - chr7_2:86348978-86348997 None:intergenic 40.0%
GTTGTAATTGAAGAAGACGG+CGG - chr7_2:86349060-86349079 None:intergenic 40.0%
CCGGTTGTAATTGAAGAAGA+CGG - chr7_2:86349063-86349082 None:intergenic 40.0%
CCGTCTTCTTCAATTACAAC+CGG + chr7_2:86349060-86349079 Msa1085570:CDS 40.0%
TAGAAGGAGGAAAGTGAAGA+AGG - chr7_2:86349095-86349114 None:intergenic 40.0%
GTTGTAATTCCAGCAACTAG+TGG - chr7_2:86349213-86349232 None:intergenic 40.0%
GCAATCTTATGAGAAGAGTC+TGG - chr7_2:86349518-86349537 None:intergenic 40.0%
ATTGGAGACTGAAACTGAAG+AGG - chr7_2:86349542-86349561 None:intergenic 40.0%
CTTCAGTTTCAGTCTCCAAT+CGG + chr7_2:86349542-86349561 Msa1085570:CDS 40.0%
TGAGAAAGAAACTGACCGAT+TGG - chr7_2:86349560-86349579 None:intergenic 40.0%
!!! GAGAAGGATCTTGGTTTTGT+TGG - chr7_2:86349670-86349689 None:intergenic 40.0%
ATGTTGTAGGAGAAGGATCT+TGG - chr7_2:86349679-86349698 None:intergenic 40.0%
!!! CTTTTTCAGGAGAATTGCTG+AGG + chr7_2:86349809-86349828 Msa1085570:intron 40.0%
GGAAGAGATCTTGTACACAT+TGG + chr7_2:86349860-86349879 Msa1085570:CDS 40.0%
TGAGATGATCCAAAACCACT+TGG + chr7_2:86350010-86350029 Msa1085570:CDS 40.0%
TTTGCTAATTTGAGCAACGG+AGG - chr7_2:86350069-86350088 None:intergenic 40.0%
TATGCAGCATCAGTGATGTA+TGG + chr7_2:86350107-86350126 Msa1085570:CDS 40.0%
! TTCTTAAGCGAGTTGACCAA+AGG + chr7_2:86350135-86350154 Msa1085570:CDS 40.0%
TGATGAATACTACTGTCGTC+TGG - chr7_2:86350200-86350219 None:intergenic 40.0%
! TTCAGGATGAGATGTCACTT+GGG - chr7_2:86350267-86350286 None:intergenic 40.0%
! CTCATCCTGAAGTATCTACT+TGG + chr7_2:86350276-86350295 Msa1085570:CDS 40.0%
TATTGTTGCGTATCTCTGGA+GGG - chr7_2:86350390-86350409 None:intergenic 40.0%
TTATTGTTGCGTATCTCTGG+AGG - chr7_2:86350391-86350410 None:intergenic 40.0%
CGCAACAATAAGATCTAAGG+AGG + chr7_2:86350400-86350419 Msa1085570:CDS 40.0%
GTGCTTCTCAATAATGCTCA+CGG - chr7_2:86350426-86350445 None:intergenic 40.0%
! CATTATTGAGAAGCACACAG+AGG + chr7_2:86350430-86350449 Msa1085570:CDS 40.0%
GGGGGCAATTGATTATTCAA+AGG + chr7_2:86350490-86350509 Msa1085570:CDS 40.0%
!!! GTTTTAGAGGCTGTGACTTT+TGG + chr7_2:86350554-86350573 Msa1085570:CDS 40.0%
ACAAATGCCTTCGAACATGT+GGG - chr7_2:86350653-86350672 None:intergenic 40.0%
AACAAATGCCTTCGAACATG+TGG - chr7_2:86350654-86350673 None:intergenic 40.0%
CGAGCAGATGAACGAAGAAA+TGG - chr7_2:86348982-86349001 None:intergenic 45.0%
TCTAGTCTAACCTAGCCGTA+TGG + chr7_2:86349002-86349021 Msa1085570:exon 45.0%
AAGGAGGAAAGTGAAGAAGG+CGG - chr7_2:86349092-86349111 None:intergenic 45.0%
! TGATTGTTGTTGCTTGCTGC+TGG + chr7_2:86349162-86349181 Msa1085570:intron 45.0%
TGATCCATTCCTTGGTTGGT+AGG + chr7_2:86349349-86349368 Msa1085570:intron 45.0%
TCATGCTTATGCCTAGGGAT+GGG - chr7_2:86349389-86349408 None:intergenic 45.0%
GTCTCTCATGCTTATGCCTA+GGG - chr7_2:86349394-86349413 None:intergenic 45.0%
AGTCTCTCATGCTTATGCCT+AGG - chr7_2:86349395-86349414 None:intergenic 45.0%
AAGCATGAGAGACTCTCTGT+TGG + chr7_2:86349401-86349420 Msa1085570:CDS 45.0%
TTATGAGAAGAGTCTGGGTC+TGG - chr7_2:86349512-86349531 None:intergenic 45.0%
ACAAGATCGGTGGATGTTGT+AGG - chr7_2:86349692-86349711 None:intergenic 45.0%
CCTGTACAAAACAAGATCGG+TGG - chr7_2:86349702-86349721 None:intergenic 45.0%
!!! CCACCGATCTTGTTTTGTAC+AGG + chr7_2:86349699-86349718 Msa1085570:CDS 45.0%
CTGAGGTCAAGGCAAATGAA+AGG + chr7_2:86349826-86349845 Msa1085570:CDS 45.0%
AGGTCAAGGCAAATGAAAGG+AGG + chr7_2:86349829-86349848 Msa1085570:CDS 45.0%
AAATGAAAGGAGGACAGCTC+TGG + chr7_2:86349839-86349858 Msa1085570:CDS 45.0%
! GTTGCATCTGGGGTTATAGA+GGG - chr7_2:86349924-86349943 None:intergenic 45.0%
! AGTTGCATCTGGGGTTATAG+AGG - chr7_2:86349925-86349944 None:intergenic 45.0%
TCTATAACCCCAGATGCAAC+TGG + chr7_2:86349924-86349943 Msa1085570:CDS 45.0%
! GAATGAGAGCCAAGTGGTTT+TGG - chr7_2:86350022-86350041 None:intergenic 45.0%
! AACCACTTGGCTCTCATTCT+TGG + chr7_2:86350023-86350042 Msa1085570:CDS 45.0%
TACCAAGAATGAGAGCCAAG+TGG - chr7_2:86350028-86350047 None:intergenic 45.0%
! CTCATTCTTGGTAACAGAGC+AGG + chr7_2:86350035-86350054 Msa1085570:CDS 45.0%
ATTGTGGATGATGCAAGACC+TGG + chr7_2:86350224-86350243 Msa1085570:CDS 45.0%
CTTCAGGATGAGATGTCACT+TGG - chr7_2:86350268-86350287 None:intergenic 45.0%
ATACCATAGCCAAATCCACC+AGG - chr7_2:86350320-86350339 None:intergenic 45.0%
ACATAGTTACGCAACCTGGT+CGG - chr7_2:86350347-86350366 None:intergenic 45.0%
CATCACATAGTTACGCAACC+TGG - chr7_2:86350351-86350370 None:intergenic 45.0%
!! AAGCACACAGAGGCATTGTT+TGG + chr7_2:86350440-86350459 Msa1085570:CDS 45.0%
ATTGTTTGGAAGACCCGGAA+TGG + chr7_2:86350454-86350473 Msa1085570:CDS 45.0%
TCACGTGTGATAACCATTCC+GGG - chr7_2:86350470-86350489 None:intergenic 45.0%
CTCACGTGTGATAACCATTC+CGG - chr7_2:86350471-86350490 None:intergenic 45.0%
GGAATGGTTATCACACGTGA+GGG + chr7_2:86350470-86350489 Msa1085570:CDS 45.0%
GAATGGTTATCACACGTGAG+GGG + chr7_2:86350471-86350490 Msa1085570:CDS 45.0%
AATGGTTATCACACGTGAGG+GGG + chr7_2:86350472-86350491 Msa1085570:CDS 45.0%
CGAGCAGATGAACGAAGAAA+TGG - chr7_2:86348982-86349001 None:intergenic 45.0%
TCTAGTCTAACCTAGCCGTA+TGG + chr7_2:86349002-86349021 Msa1085570:exon 45.0%
AAGGAGGAAAGTGAAGAAGG+CGG - chr7_2:86349092-86349111 None:intergenic 45.0%
! TGATTGTTGTTGCTTGCTGC+TGG + chr7_2:86349162-86349181 Msa1085570:intron 45.0%
TGATCCATTCCTTGGTTGGT+AGG + chr7_2:86349349-86349368 Msa1085570:intron 45.0%
TCATGCTTATGCCTAGGGAT+GGG - chr7_2:86349389-86349408 None:intergenic 45.0%
GTCTCTCATGCTTATGCCTA+GGG - chr7_2:86349394-86349413 None:intergenic 45.0%
AGTCTCTCATGCTTATGCCT+AGG - chr7_2:86349395-86349414 None:intergenic 45.0%
AAGCATGAGAGACTCTCTGT+TGG + chr7_2:86349401-86349420 Msa1085570:CDS 45.0%
TTATGAGAAGAGTCTGGGTC+TGG - chr7_2:86349512-86349531 None:intergenic 45.0%
ACAAGATCGGTGGATGTTGT+AGG - chr7_2:86349692-86349711 None:intergenic 45.0%
CCTGTACAAAACAAGATCGG+TGG - chr7_2:86349702-86349721 None:intergenic 45.0%
!!! CCACCGATCTTGTTTTGTAC+AGG + chr7_2:86349699-86349718 Msa1085570:CDS 45.0%
CTGAGGTCAAGGCAAATGAA+AGG + chr7_2:86349826-86349845 Msa1085570:CDS 45.0%
AGGTCAAGGCAAATGAAAGG+AGG + chr7_2:86349829-86349848 Msa1085570:CDS 45.0%
AAATGAAAGGAGGACAGCTC+TGG + chr7_2:86349839-86349858 Msa1085570:CDS 45.0%
! GTTGCATCTGGGGTTATAGA+GGG - chr7_2:86349924-86349943 None:intergenic 45.0%
! AGTTGCATCTGGGGTTATAG+AGG - chr7_2:86349925-86349944 None:intergenic 45.0%
TCTATAACCCCAGATGCAAC+TGG + chr7_2:86349924-86349943 Msa1085570:CDS 45.0%
! GAATGAGAGCCAAGTGGTTT+TGG - chr7_2:86350022-86350041 None:intergenic 45.0%
! AACCACTTGGCTCTCATTCT+TGG + chr7_2:86350023-86350042 Msa1085570:CDS 45.0%
TACCAAGAATGAGAGCCAAG+TGG - chr7_2:86350028-86350047 None:intergenic 45.0%
! CTCATTCTTGGTAACAGAGC+AGG + chr7_2:86350035-86350054 Msa1085570:CDS 45.0%
ATTGTGGATGATGCAAGACC+TGG + chr7_2:86350224-86350243 Msa1085570:CDS 45.0%
CTTCAGGATGAGATGTCACT+TGG - chr7_2:86350268-86350287 None:intergenic 45.0%
ATACCATAGCCAAATCCACC+AGG - chr7_2:86350320-86350339 None:intergenic 45.0%
ACATAGTTACGCAACCTGGT+CGG - chr7_2:86350347-86350366 None:intergenic 45.0%
CATCACATAGTTACGCAACC+TGG - chr7_2:86350351-86350370 None:intergenic 45.0%
!! AAGCACACAGAGGCATTGTT+TGG + chr7_2:86350440-86350459 Msa1085570:CDS 45.0%
ATTGTTTGGAAGACCCGGAA+TGG + chr7_2:86350454-86350473 Msa1085570:CDS 45.0%
TCACGTGTGATAACCATTCC+GGG - chr7_2:86350470-86350489 None:intergenic 45.0%
CTCACGTGTGATAACCATTC+CGG - chr7_2:86350471-86350490 None:intergenic 45.0%
GGAATGGTTATCACACGTGA+GGG + chr7_2:86350470-86350489 Msa1085570:CDS 45.0%
GAATGGTTATCACACGTGAG+GGG + chr7_2:86350471-86350490 Msa1085570:CDS 45.0%
AATGGTTATCACACGTGAGG+GGG + chr7_2:86350472-86350491 Msa1085570:CDS 45.0%
!! TAATATAAATAAATAATTCT+CGG - chr7_2:86348851-86348870 None:intergenic 5.0%
!! ATAAATTAATTAATAATAAC+TGG - chr7_2:86350771-86350790 None:intergenic 5.0%
!! TAATATAAATAAATAATTCT+CGG - chr7_2:86348851-86348870 None:intergenic 5.0%
!! ATAAATTAATTAATAATAAC+TGG - chr7_2:86350771-86350790 None:intergenic 5.0%
TGATAAGAAGAGGACGGCTG+TGG - chr7_2:86349037-86349056 None:intergenic 50.0%
AAGACGGCGGTGATAAGAAG+AGG - chr7_2:86349047-86349066 None:intergenic 50.0%
CACACCTACCAACCAAGGAA+TGG - chr7_2:86349356-86349375 None:intergenic 50.0%
AAGTGCACACCTACCAACCA+AGG - chr7_2:86349361-86349380 None:intergenic 50.0%
CATGCTTATGCCTAGGGATG+GGG - chr7_2:86349388-86349407 None:intergenic 50.0%
CTCATGCTTATGCCTAGGGA+TGG - chr7_2:86349390-86349409 None:intergenic 50.0%
ATTGGAGCTGGAGAAGTTGC+TGG - chr7_2:86349625-86349644 None:intergenic 50.0%
CATCACGATCAGATTGGAGC+TGG - chr7_2:86349637-86349656 None:intergenic 50.0%
GAGCAGCATCACGATCAGAT+TGG - chr7_2:86349643-86349662 None:intergenic 50.0%
TCGGTGGATGTTGTAGGAGA+AGG - chr7_2:86349686-86349705 None:intergenic 50.0%
CAGGAGAATTGCTGAGGTCA+AGG + chr7_2:86349815-86349834 Msa1085570:intron 50.0%
TAACCCCAGATGCAACTGGT+AGG + chr7_2:86349928-86349947 Msa1085570:CDS 50.0%
AACCCCAGATGCAACTGGTA+GGG + chr7_2:86349929-86349948 Msa1085570:CDS 50.0%
! CAACTGGTAGGGTCGATTCA+TGG + chr7_2:86349940-86349959 Msa1085570:CDS 50.0%
TAGCAAACTGAGGATAGGGC+AGG + chr7_2:86350082-86350101 Msa1085570:CDS 50.0%
AGTTGACCAAAGGTTCCAGC+TGG + chr7_2:86350145-86350164 Msa1085570:CDS 50.0%
ACTTCTCCAGCTGGAACCTT+TGG - chr7_2:86350154-86350173 None:intergenic 50.0%
!! CTTTCATCGACTTCTCCAGC+TGG - chr7_2:86350163-86350182 None:intergenic 50.0%
! TGCAAGACCTGGTAGTGAAG+TGG + chr7_2:86350235-86350254 Msa1085570:CDS 50.0%
! GAAGTGTCCACTTCACTACC+AGG - chr7_2:86350245-86350264 None:intergenic 50.0%
CCAGGCCAAGTAGATACTTC+AGG - chr7_2:86350284-86350303 None:intergenic 50.0%
! CCTGAAGTATCTACTTGGCC+TGG + chr7_2:86350281-86350300 Msa1085570:CDS 50.0%
! GAAGTATCTACTTGGCCTGG+TGG + chr7_2:86350284-86350303 Msa1085570:CDS 50.0%
!! GATGTCAGTCCTGGTGGATT+TGG + chr7_2:86350308-86350327 Msa1085570:CDS 50.0%
!! AGTCCTGGTGGATTTGGCTA+TGG + chr7_2:86350314-86350333 Msa1085570:CDS 50.0%
GCTATGGTATAAAGCCGACC+AGG + chr7_2:86350330-86350349 Msa1085570:CDS 50.0%
!! GAGGCATTGTTTGGAAGACC+CGG + chr7_2:86350449-86350468 Msa1085570:CDS 50.0%
CGGAATGGTTATCACACGTG+AGG + chr7_2:86350469-86350488 Msa1085570:CDS 50.0%
AATGCCTTCGAACATGTGGG+AGG - chr7_2:86350650-86350669 None:intergenic 50.0%
TGATAAGAAGAGGACGGCTG+TGG - chr7_2:86349037-86349056 None:intergenic 50.0%
AAGACGGCGGTGATAAGAAG+AGG - chr7_2:86349047-86349066 None:intergenic 50.0%
CACACCTACCAACCAAGGAA+TGG - chr7_2:86349356-86349375 None:intergenic 50.0%
AAGTGCACACCTACCAACCA+AGG - chr7_2:86349361-86349380 None:intergenic 50.0%
CATGCTTATGCCTAGGGATG+GGG - chr7_2:86349388-86349407 None:intergenic 50.0%
CTCATGCTTATGCCTAGGGA+TGG - chr7_2:86349390-86349409 None:intergenic 50.0%
ATTGGAGCTGGAGAAGTTGC+TGG - chr7_2:86349625-86349644 None:intergenic 50.0%
CATCACGATCAGATTGGAGC+TGG - chr7_2:86349637-86349656 None:intergenic 50.0%
GAGCAGCATCACGATCAGAT+TGG - chr7_2:86349643-86349662 None:intergenic 50.0%
TCGGTGGATGTTGTAGGAGA+AGG - chr7_2:86349686-86349705 None:intergenic 50.0%
CAGGAGAATTGCTGAGGTCA+AGG + chr7_2:86349815-86349834 Msa1085570:intron 50.0%
TAACCCCAGATGCAACTGGT+AGG + chr7_2:86349928-86349947 Msa1085570:CDS 50.0%
AACCCCAGATGCAACTGGTA+GGG + chr7_2:86349929-86349948 Msa1085570:CDS 50.0%
! CAACTGGTAGGGTCGATTCA+TGG + chr7_2:86349940-86349959 Msa1085570:CDS 50.0%
TAGCAAACTGAGGATAGGGC+AGG + chr7_2:86350082-86350101 Msa1085570:CDS 50.0%
AGTTGACCAAAGGTTCCAGC+TGG + chr7_2:86350145-86350164 Msa1085570:CDS 50.0%
ACTTCTCCAGCTGGAACCTT+TGG - chr7_2:86350154-86350173 None:intergenic 50.0%
!! CTTTCATCGACTTCTCCAGC+TGG - chr7_2:86350163-86350182 None:intergenic 50.0%
! TGCAAGACCTGGTAGTGAAG+TGG + chr7_2:86350235-86350254 Msa1085570:CDS 50.0%
! GAAGTGTCCACTTCACTACC+AGG - chr7_2:86350245-86350264 None:intergenic 50.0%
CCAGGCCAAGTAGATACTTC+AGG - chr7_2:86350284-86350303 None:intergenic 50.0%
! CCTGAAGTATCTACTTGGCC+TGG + chr7_2:86350281-86350300 Msa1085570:CDS 50.0%
! GAAGTATCTACTTGGCCTGG+TGG + chr7_2:86350284-86350303 Msa1085570:CDS 50.0%
!! GATGTCAGTCCTGGTGGATT+TGG + chr7_2:86350308-86350327 Msa1085570:CDS 50.0%
!! AGTCCTGGTGGATTTGGCTA+TGG + chr7_2:86350314-86350333 Msa1085570:CDS 50.0%
GCTATGGTATAAAGCCGACC+AGG + chr7_2:86350330-86350349 Msa1085570:CDS 50.0%
!! GAGGCATTGTTTGGAAGACC+CGG + chr7_2:86350449-86350468 Msa1085570:CDS 50.0%
CGGAATGGTTATCACACGTG+AGG + chr7_2:86350469-86350488 Msa1085570:CDS 50.0%
AATGCCTTCGAACATGTGGG+AGG - chr7_2:86350650-86350669 None:intergenic 50.0%
CTAACCTAGCCGTATGGACG+TGG + chr7_2:86349008-86349027 Msa1085570:exon 55.0%
CGGCGGTGATAAGAAGAGGA+CGG - chr7_2:86349043-86349062 None:intergenic 55.0%
AGGAAAGTGAAGAAGGCGGC+AGG - chr7_2:86349088-86349107 None:intergenic 55.0%
CTTATGCCTAGGGATGGGGA+CGG - chr7_2:86349384-86349403 None:intergenic 55.0%
GACCCTACCAGTTGCATCTG+GGG - chr7_2:86349934-86349953 None:intergenic 55.0%
CGACCCTACCAGTTGCATCT+GGG - chr7_2:86349935-86349954 None:intergenic 55.0%
TCGACCCTACCAGTTGCATC+TGG - chr7_2:86349936-86349955 None:intergenic 55.0%
!! CTGGAGGGTATCACCGTCAA+AGG - chr7_2:86350375-86350394 None:intergenic 55.0%
CTGGGATGTTGAGAGCTACG+TGG + chr7_2:86350586-86350605 Msa1085570:CDS 55.0%
TTGAGAGCTACGTGGACTCG+AGG + chr7_2:86350594-86350613 Msa1085570:CDS 55.0%
GCATCCTCCCACATGTTCGA+AGG + chr7_2:86350643-86350662 Msa1085570:three_prime_UTR 55.0%
CTAACCTAGCCGTATGGACG+TGG + chr7_2:86349008-86349027 Msa1085570:exon 55.0%
CGGCGGTGATAAGAAGAGGA+CGG - chr7_2:86349043-86349062 None:intergenic 55.0%
AGGAAAGTGAAGAAGGCGGC+AGG - chr7_2:86349088-86349107 None:intergenic 55.0%
CTTATGCCTAGGGATGGGGA+CGG - chr7_2:86349384-86349403 None:intergenic 55.0%
GACCCTACCAGTTGCATCTG+GGG - chr7_2:86349934-86349953 None:intergenic 55.0%
CGACCCTACCAGTTGCATCT+GGG - chr7_2:86349935-86349954 None:intergenic 55.0%
TCGACCCTACCAGTTGCATC+TGG - chr7_2:86349936-86349955 None:intergenic 55.0%
!! CTGGAGGGTATCACCGTCAA+AGG - chr7_2:86350375-86350394 None:intergenic 55.0%
CTGGGATGTTGAGAGCTACG+TGG + chr7_2:86350586-86350605 Msa1085570:CDS 55.0%
TTGAGAGCTACGTGGACTCG+AGG + chr7_2:86350594-86350613 Msa1085570:CDS 55.0%
GCATCCTCCCACATGTTCGA+AGG + chr7_2:86350643-86350662 Msa1085570:three_prime_UTR 55.0%
CTGTGGCTGCCACGTCCATA+CGG - chr7_2:86349020-86349039 None:intergenic 60.0%
GTGAAGAAGGCGGCAGGATC+CGG - chr7_2:86349082-86349101 None:intergenic 60.0%
AGAAGAGTCTGGGTCTGGCG+AGG - chr7_2:86349507-86349526 None:intergenic 60.0%
ACCGCAGCAGGCACAAGATG+GGG - chr7_2:86349599-86349618 None:intergenic 60.0%
CACCGCAGCAGGCACAAGAT+GGG - chr7_2:86349600-86349619 None:intergenic 60.0%
CTGTGGCTGCCACGTCCATA+CGG - chr7_2:86349020-86349039 None:intergenic 60.0%
GTGAAGAAGGCGGCAGGATC+CGG - chr7_2:86349082-86349101 None:intergenic 60.0%
AGAAGAGTCTGGGTCTGGCG+AGG - chr7_2:86349507-86349526 None:intergenic 60.0%
ACCGCAGCAGGCACAAGATG+GGG - chr7_2:86349599-86349618 None:intergenic 60.0%
CACCGCAGCAGGCACAAGAT+GGG - chr7_2:86349600-86349619 None:intergenic 60.0%
GCTGCCACGTCCATACGGCT+AGG - chr7_2:86349015-86349034 None:intergenic 65.0%
GCACTTCCGTCCCCATCCCT+AGG + chr7_2:86349375-86349394 Msa1085570:CDS 65.0%
TGGGTCTGGCGAGGAGGAAG+AGG - chr7_2:86349498-86349517 None:intergenic 65.0%
AGAGTCTGGGTCTGGCGAGG+AGG - chr7_2:86349504-86349523 None:intergenic 65.0%
CCGCAGCAGGCACAAGATGG+GGG - chr7_2:86349598-86349617 None:intergenic 65.0%
CCCCCATCTTGTGCCTGCTG+CGG + chr7_2:86349595-86349614 Msa1085570:CDS 65.0%
CCACCGCAGCAGGCACAAGA+TGG - chr7_2:86349601-86349620 None:intergenic 65.0%
CCATCTTGTGCCTGCTGCGG+TGG + chr7_2:86349598-86349617 Msa1085570:CDS 65.0%
AGTTGCTGGTCCACCGCAGC+AGG - chr7_2:86349611-86349630 None:intergenic 65.0%
CCAGGACTGACATCGCCACC+AGG - chr7_2:86350302-86350321 None:intergenic 65.0%
! CCTGGTGGCGATGTCAGTCC+TGG + chr7_2:86350299-86350318 Msa1085570:CDS 65.0%
GGTGGCGATGTCAGTCCTGG+TGG + chr7_2:86350302-86350321 Msa1085570:CDS 65.0%
GCTGCCACGTCCATACGGCT+AGG - chr7_2:86349015-86349034 None:intergenic 65.0%
GCACTTCCGTCCCCATCCCT+AGG + chr7_2:86349375-86349394 Msa1085570:CDS 65.0%
TGGGTCTGGCGAGGAGGAAG+AGG - chr7_2:86349498-86349517 None:intergenic 65.0%
AGAGTCTGGGTCTGGCGAGG+AGG - chr7_2:86349504-86349523 None:intergenic 65.0%
CCGCAGCAGGCACAAGATGG+GGG - chr7_2:86349598-86349617 None:intergenic 65.0%
CCCCCATCTTGTGCCTGCTG+CGG + chr7_2:86349595-86349614 Msa1085570:CDS 65.0%
CCACCGCAGCAGGCACAAGA+TGG - chr7_2:86349601-86349620 None:intergenic 65.0%
CCATCTTGTGCCTGCTGCGG+TGG + chr7_2:86349598-86349617 Msa1085570:CDS 65.0%
AGTTGCTGGTCCACCGCAGC+AGG - chr7_2:86349611-86349630 None:intergenic 65.0%
CCAGGACTGACATCGCCACC+AGG - chr7_2:86350302-86350321 None:intergenic 65.0%
! CCTGGTGGCGATGTCAGTCC+TGG + chr7_2:86350299-86350318 Msa1085570:CDS 65.0%
GGTGGCGATGTCAGTCCTGG+TGG + chr7_2:86350302-86350321 Msa1085570:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 86348767 86350982 86348767 ID=Msa1085570;Name=Msa1085570
chr7_2 mRNA 86348767 86350982 86348767 ID=Msa1085570-mRNA-1;Parent=Msa1085570;Name=Msa1085570-mRNA-1;_AED=0.02;_eAED=0.02;_QI=254|1|1|1|1|1|3|345|423
chr7_2 exon 86348767 86349122 86348767 ID=Msa1085570-mRNA-1:exon:23341;Parent=Msa1085570-mRNA-1
chr7_2 exon 86349371 86349720 86349371 ID=Msa1085570-mRNA-1:exon:23342;Parent=Msa1085570-mRNA-1
chr7_2 exon 86349818 86350982 86349818 ID=Msa1085570-mRNA-1:exon:23343;Parent=Msa1085570-mRNA-1
chr7_2 five_prime_UTR 86348767 86349020 86348767 ID=Msa1085570-mRNA-1:five_prime_utr;Parent=Msa1085570-mRNA-1
chr7_2 CDS 86349021 86349122 86349021 ID=Msa1085570-mRNA-1:cds;Parent=Msa1085570-mRNA-1
chr7_2 CDS 86349371 86349720 86349371 ID=Msa1085570-mRNA-1:cds;Parent=Msa1085570-mRNA-1
chr7_2 CDS 86349818 86350637 86349818 ID=Msa1085570-mRNA-1:cds;Parent=Msa1085570-mRNA-1
chr7_2 three_prime_UTR 86350638 86350982 86350638 ID=Msa1085570-mRNA-1:three_prime_utr;Parent=Msa1085570-mRNA-1
Gene Sequence

>Msa1085570

ATGGACGTGGCAGCCACAGCCGTCCTCTTCTTATCACCGCCGTCTTCTTCAATTACAACCGGATCCTGCCGCCTTCTTCACTTTCCTCCTTCTAATAATAAGGTGTGCACTTCCGTCCCCATCCCTAGGCATAAGCATGAGAGACTCTCTGTTGGAATTGCTACAAATACGATAACAAGAAGAAGAAGAAGAAGAAGAAGAAGCTTTTTAGTTAGAGCAGCAACATCCTCTTCCTCCTCGCCAGACCCAGACTCTTCTCATAAGATTGCACCTCTTCAGTTTCAGTCTCCAATCGGTCAGTTTCTTTCTCAGATTTTGATCAATCACCCCCATCTTGTGCCTGCTGCGGTGGACCAGCAACTTCTCCAGCTCCAATCTGATCGTGATGCTGCTCATCACCAACAAAACCAAGATCCTTCTCCTACAACATCCACCGATCTTGTTTTGTACAGGAGAATTGCTGAGGTCAAGGCAAATGAAAGGAGGACAGCTCTGGAAGAGATCTTGTACACATTGGTTGTGCAAAAGTTCATGGATGCTAATATTTCTTTGATACCCTCTATAACCCCAGATGCAACTGGTAGGGTCGATTCATGGTCAAATGAAGATGGGAAACTTGAGCAGCTTCACTCAAACGAAGCATATGAGATGATCCAAAACCACTTGGCTCTCATTCTTGGTAACAGAGCAGGAGATCTATCCTCCGTTGCTCAAATTAGCAAACTGAGGATAGGGCAGGTCTATGCAGCATCAGTGATGTATGGTTACTTTCTTAAGCGAGTTGACCAAAGGTTCCAGCTGGAGAAGTCGATGAAAGTTCTTACAAGTGCACCAGACGACAGTAGTATTCATCAAACTATTGTGGATGATGCAAGACCTGGTAGTGAAGTGGACACTTCCCAAGTGACATCTCATCCTGAAGTATCTACTTGGCCTGGTGGCGATGTCAGTCCTGGTGGATTTGGCTATGGTATAAAGCCGACCAGGTTGCGTAACTATGTGATGTCCTTTGACGGTGATACCCTCCAGAGATACGCAACAATAAGATCTAAGGAGGCCGTGAGCATTATTGAGAAGCACACAGAGGCATTGTTTGGAAGACCCGGAATGGTTATCACACGTGAGGGGGCAATTGATTATTCAAAGGATGAAACCATCAAAATTAGCTTTGGTGGTTTAAGGAGACTTGTTTTAGAGGCTGTGACTTTTGGTTGTTTTCTCTGGGATGTTGAGAGCTACGTGGACTCGAGGTACCATTTCGTCTTAAATTGA

Protein sequence

>Msa1085570

MDVAATAVLFLSPPSSSITTGSCRLLHFPPSNNKVCTSVPIPRHKHERLSVGIATNTITRRRRRRRRSFLVRAATSSSSSPDPDSSHKIAPLQFQSPIGQFLSQILINHPHLVPAAVDQQLLQLQSDRDAAHHQQNQDPSPTTSTDLVLYRRIAEVKANERRTALEEILYTLVVQKFMDANISLIPSITPDATGRVDSWSNEDGKLEQLHSNEAYEMIQNHLALILGNRAGDLSSVAQISKLRIGQVYAASVMYGYFLKRVDQRFQLEKSMKVLTSAPDDSSIHQTIVDDARPGSEVDTSQVTSHPEVSTWPGGDVSPGGFGYGIKPTRLRNYVMSFDGDTLQRYATIRSKEAVSIIEKHTEALFGRPGMVITREGAIDYSKDETIKISFGGLRRLVLEAVTFGCFLWDVESYVDSRYHFVLN*