Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1367260 | XP_003610423.1 | 93.750 | 176 | 11 | 0 | 1 | 176 | 1 | 176 | 1.10e-116 | 338 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1367260 | G7JJ63 | 93.750 | 176 | 11 | 0 | 1 | 176 | 1 | 176 | 5.26e-117 | 338 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002110 | Msa1367260 | 0.827077 | 1.909592e-54 | -8.615850e-47 |
| Msa0007810 | Msa1367260 | 0.808428 | 3.112656e-50 | -8.615850e-47 |
| Msa0011450 | Msa1367260 | 0.808093 | 3.668900e-50 | -8.615850e-47 |
| Msa0032930 | Msa1367260 | 0.803192 | 3.918963e-49 | -8.615850e-47 |
| Msa0034700 | Msa1367260 | 0.824740 | 6.851317e-54 | -8.615850e-47 |
| Msa0053260 | Msa1367260 | 0.827609 | 1.423158e-54 | -8.615850e-47 |
| Msa0056220 | Msa1367260 | 0.818968 | 1.485938e-52 | -8.615850e-47 |
| Msa0056230 | Msa1367260 | 0.813974 | 1.950136e-51 | -8.615850e-47 |
| Msa0065670 | Msa1367260 | 0.810996 | 8.731044e-51 | -8.615850e-47 |
| Msa0066890 | Msa1367260 | 0.814882 | 1.228194e-51 | -8.615850e-47 |
| Msa0077570 | Msa1367260 | 0.817605 | 3.023189e-52 | -8.615850e-47 |
| Msa0095810 | Msa1367260 | 0.824487 | 7.859569e-54 | -8.615850e-47 |
| Msa0098500 | Msa1367260 | 0.817985 | 2.482557e-52 | -8.615850e-47 |
| Msa0098750 | Msa1367260 | 0.817607 | 3.021214e-52 | -8.615850e-47 |
| Msa0111110 | Msa1367260 | 0.831223 | 1.885740e-55 | -8.615850e-47 |
| Msa1366140 | Msa1367260 | 0.809288 | 2.037701e-50 | -8.615850e-47 |
| Msa1367260 | Msa1371260 | 0.802061 | 6.709103e-49 | -8.615850e-47 |
| Msa1367260 | Msa1374140 | -0.801808 | 7.560195e-49 | -8.615850e-47 |
| Msa1367260 | Msa1387450 | 0.818634 | 1.769088e-52 | -8.615850e-47 |
| Msa1367260 | Msa1389670 | 0.813729 | 2.208936e-51 | -8.615850e-47 |
| Msa1367260 | Msa1394160 | 0.804044 | 2.609444e-49 | -8.615850e-47 |
| Msa1367260 | Msa1421520 | 0.825575 | 4.350815e-54 | -8.615850e-47 |
| Msa1367260 | Msa1428230 | 0.800591 | 1.341080e-48 | -8.615850e-47 |
| Msa1367260 | Msa1434710 | 0.895553 | 8.589549e-76 | -8.615850e-47 |
| Msa1367260 | Msa1438410 | 0.807715 | 4.413711e-50 | -8.615850e-47 |
| Msa0639630 | Msa1367260 | 0.802416 | 5.667892e-49 | -8.615850e-47 |
| Msa0658920 | Msa1367260 | 0.842773 | 2.106768e-58 | -8.615850e-47 |
| Msa0677460 | Msa1367260 | 0.817167 | 3.794411e-52 | -8.615850e-47 |
| Msa0685390 | Msa1367260 | 0.821371 | 4.183415e-53 | -8.615850e-47 |
| Msa0686950 | Msa1367260 | 0.801399 | 9.172188e-49 | -8.615850e-47 |
| Msa0704350 | Msa1367260 | 0.842657 | 2.261528e-58 | -8.615850e-47 |
| Msa0704430 | Msa1367260 | 0.839321 | 1.699062e-57 | -8.615850e-47 |
| Msa0706700 | Msa1367260 | 0.807123 | 5.894538e-50 | -8.615850e-47 |
| Msa0714230 | Msa1367260 | 0.811960 | 5.389149e-51 | -8.615850e-47 |
| Msa0739200 | Msa1367260 | 0.807167 | 5.769124e-50 | -8.615850e-47 |
| Msa0798300 | Msa1367260 | -0.814502 | 1.491104e-51 | -8.615850e-47 |
| Msa0819620 | Msa1367260 | 0.808464 | 3.057299e-50 | -8.615850e-47 |
| Msa0822680 | Msa1367260 | 0.801213 | 1.001131e-48 | -8.615850e-47 |
| Msa0129930 | Msa1367260 | 0.831053 | 2.076111e-55 | -8.615850e-47 |
| Msa0151510 | Msa1367260 | 0.807719 | 4.406527e-50 | -8.615850e-47 |
| Msa0154880 | Msa1367260 | 0.802385 | 5.753180e-49 | -8.615850e-47 |
| Msa0154890 | Msa1367260 | 0.821595 | 3.713302e-53 | -8.615850e-47 |
| Msa0190470 | Msa1367260 | 0.813063 | 3.094578e-51 | -8.615850e-47 |
| Msa0229750 | Msa1367260 | 0.848428 | 6.167753e-60 | -8.615850e-47 |
| Msa1279200 | Msa1367260 | 0.802213 | 6.242823e-49 | -8.615850e-47 |
| Msa1296270 | Msa1367260 | 0.806107 | 9.660415e-50 | -8.615850e-47 |
| Msa1305970 | Msa1367260 | 0.823536 | 1.313987e-53 | -8.615850e-47 |
| Msa1328680 | Msa1367260 | 0.804213 | 2.406751e-49 | -8.615850e-47 |
| Msa0369580 | Msa1367260 | 0.806855 | 6.717330e-50 | -8.615850e-47 |
| Msa0371350 | Msa1367260 | 0.807385 | 5.186278e-50 | -8.615850e-47 |
| Msa0375930 | Msa1367260 | 0.860587 | 1.861894e-63 | -8.615850e-47 |
| Msa0387740 | Msa1367260 | 0.840802 | 6.981267e-58 | -8.615850e-47 |
| Msa0391160 | Msa1367260 | 0.804125 | 2.509398e-49 | -8.615850e-47 |
| Msa0396640 | Msa1367260 | 0.825265 | 5.149544e-54 | -8.615850e-47 |
| Msa0424570 | Msa1367260 | 0.858653 | 7.108506e-63 | -8.615850e-47 |
| Msa0426680 | Msa1367260 | 0.815044 | 1.131064e-51 | -8.615850e-47 |
| Msa0438680 | Msa1367260 | 0.830463 | 2.895272e-55 | -8.615850e-47 |
| Msa0444170 | Msa1367260 | 0.826129 | 3.212656e-54 | -8.615850e-47 |
| Msa0463820 | Msa1367260 | 0.815083 | 1.108759e-51 | -8.615850e-47 |
| Msa1037450 | Msa1367260 | 0.843808 | 1.115439e-58 | -8.615850e-47 |
| Msa1043660 | Msa1367260 | -0.805603 | 1.232738e-49 | -8.615850e-47 |
| Msa1064450 | Msa1367260 | 0.816597 | 5.093398e-52 | -8.615850e-47 |
| Msa1078280 | Msa1367260 | 0.836128 | 1.122008e-56 | -8.615850e-47 |
| Msa1085570 | Msa1367260 | 0.887110 | 1.902733e-72 | -8.615850e-47 |
| Msa1086030 | Msa1367260 | 0.805427 | 1.342106e-49 | -8.615850e-47 |
| Msa1086320 | Msa1367260 | 0.802206 | 6.263291e-49 | -8.615850e-47 |
| Msa1086670 | Msa1367260 | 0.805371 | 1.378861e-49 | -8.615850e-47 |
| Msa1086900 | Msa1367260 | 0.800835 | 1.196330e-48 | -8.615850e-47 |
| Msa1101610 | Msa1367260 | 0.827272 | 1.714758e-54 | -8.615850e-47 |
| Msa0262350 | Msa1367260 | 0.807217 | 5.628981e-50 | -8.615850e-47 |
| Msa0268450 | Msa1367260 | 0.800316 | 1.526226e-48 | -8.615850e-47 |
| Msa0268570 | Msa1367260 | 0.805417 | 1.348408e-49 | -8.615850e-47 |
| Msa0268880 | Msa1367260 | 0.806113 | 9.629765e-50 | -8.615850e-47 |
| Msa0293070 | Msa1367260 | 0.823516 | 1.327810e-53 | -8.615850e-47 |
| Msa0297180 | Msa1367260 | 0.816867 | 4.432092e-52 | -8.615850e-47 |
| Msa0300130 | Msa1367260 | 0.802805 | 4.712814e-49 | -8.615850e-47 |
| Msa0350070 | Msa1367260 | 0.814361 | 1.602140e-51 | -8.615850e-47 |
| Msa0357050 | Msa1367260 | 0.817176 | 3.777131e-52 | -8.615850e-47 |
| Msa1123490 | Msa1367260 | 0.841336 | 5.053466e-58 | -8.615850e-47 |
| Msa1130860 | Msa1367260 | 0.864491 | 1.170229e-64 | -8.615850e-47 |
| Msa1130920 | Msa1367260 | 0.862809 | 3.896565e-64 | -8.615850e-47 |
| Msa1169590 | Msa1367260 | 0.803303 | 3.717755e-49 | -8.615850e-47 |
| Msa1169780 | Msa1367260 | 0.823583 | 1.281213e-53 | -8.615850e-47 |
| Msa1199540 | Msa1367260 | 0.805251 | 1.460613e-49 | -8.615850e-47 |
| Msa0491730 | Msa1367260 | 0.815594 | 8.533778e-52 | -8.615850e-47 |
| Msa0516000 | Msa1367260 | 0.863609 | 2.203716e-64 | -8.615850e-47 |
| Msa0525180 | Msa1367260 | 0.806458 | 8.145162e-50 | -8.615850e-47 |
| Msa0542330 | Msa1367260 | 0.805919 | 1.057963e-49 | -8.615850e-47 |
| Msa0544390 | Msa1367260 | 0.812049 | 5.155219e-51 | -8.615850e-47 |
| Msa0572270 | Msa1367260 | 0.818568 | 1.831854e-52 | -8.615850e-47 |
| Msa0575960 | Msa1367260 | 0.876202 | 1.684575e-68 | -8.615850e-47 |
| Msa0582650 | Msa1367260 | 0.801639 | 8.187734e-49 | -8.615850e-47 |
| Msa0582770 | Msa1367260 | 0.805826 | 1.106755e-49 | -8.615850e-47 |
| Msa0582870 | Msa1367260 | 0.804975 | 1.668644e-49 | -8.615850e-47 |
| Msa0582920 | Msa1367260 | 0.802933 | 4.433426e-49 | -8.615850e-47 |
| Msa0859830 | Msa1367260 | 0.805551 | 1.263879e-49 | -8.615850e-47 |
| Msa0873070 | Msa1367260 | 0.814484 | 1.504690e-51 | -8.615850e-47 |
| Msa0899080 | Msa1367260 | 0.807939 | 3.956580e-50 | -8.615850e-47 |
| Msa0975460 | Msa1367260 | 0.800338 | 1.510350e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1367260 | MtrunA17_Chr4g0074781 | 93.750 | 176 | 11 | 0 | 1 | 176 | 1 | 176 | 1.01e-120 | 338 |
| Msa1367260 | MtrunA17_Chr2g0288341 | 51.142 | 219 | 63 | 7 | 1 | 176 | 1 | 218 | 1.35e-55 | 174 |
| Msa1367260 | MtrunA17_Chr7g0264131 | 37.705 | 183 | 82 | 8 | 1 | 175 | 1 | 159 | 7.17e-21 | 84.0 |
| Msa1367260 | MtrunA17_Chr2g0326661 | 55.952 | 84 | 30 | 2 | 97 | 174 | 72 | 154 | 3.91e-20 | 82.0 |
| Msa1367260 | MtrunA17_Chr4g0029031 | 51.190 | 84 | 35 | 2 | 96 | 174 | 75 | 157 | 4.72e-18 | 76.6 |
| Msa1367260 | MtrunA17_Chr2g0288501 | 50.602 | 83 | 36 | 3 | 97 | 174 | 72 | 154 | 1.38e-16 | 72.8 |
| Msa1367260 | MtrunA17_Chr2g0321611 | 48.193 | 83 | 35 | 3 | 99 | 173 | 170 | 252 | 1.05e-14 | 70.1 |
| Msa1367260 | MtrunA17_Chr3g0099101 | 28.415 | 183 | 83 | 5 | 32 | 174 | 22 | 196 | 3.14e-14 | 67.4 |
| Msa1367260 | MtrunA17_Chr7g0266691 | 65.217 | 46 | 13 | 1 | 132 | 174 | 170 | 215 | 5.98e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1367260 | AT1G11700.1 | 47.087 | 206 | 74 | 7 | 1 | 176 | 1 | 201 | 3.07e-45 | 148 |
| Msa1367260 | AT1G61930.1 | 48.529 | 204 | 76 | 9 | 1 | 176 | 1 | 203 | 4.27e-43 | 142 |
| Msa1367260 | AT4G21930.1 | 46.193 | 197 | 71 | 9 | 1 | 176 | 1 | 183 | 3.40e-38 | 129 |
| Msa1367260 | AT3G45210.1 | 56.757 | 74 | 30 | 2 | 101 | 174 | 75 | 146 | 8.31e-21 | 84.0 |
| Msa1367260 | AT5G60680.1 | 35.519 | 183 | 87 | 4 | 1 | 174 | 1 | 161 | 1.66e-19 | 80.9 |
| Msa1367260 | AT4G21970.1 | 47.059 | 85 | 37 | 3 | 98 | 174 | 59 | 143 | 8.55e-19 | 79.0 |
| Msa1367260 | AT5G03230.1 | 46.591 | 88 | 34 | 2 | 99 | 174 | 78 | 164 | 2.90e-17 | 75.1 |
| Msa1367260 | AT2G28400.1 | 48.889 | 90 | 35 | 3 | 96 | 175 | 73 | 161 | 4.01e-17 | 74.7 |
| Msa1367260 | AT4G04630.1 | 48.315 | 89 | 34 | 3 | 98 | 174 | 78 | 166 | 1.25e-14 | 68.2 |
| Msa1367260 | AT4G26950.1 | 34.146 | 164 | 76 | 8 | 21 | 174 | 1 | 142 | 9.27e-14 | 65.5 |
| Msa1367260 | AT4G26950.2 | 34.146 | 164 | 76 | 8 | 21 | 174 | 1 | 142 | 9.27e-14 | 65.5 |
| Msa1367260 | AT3G15040.1 | 59.184 | 49 | 17 | 1 | 129 | 174 | 193 | 241 | 3.50e-12 | 63.2 |
| Msa1367260 | AT1G29640.1 | 47.561 | 82 | 31 | 4 | 97 | 174 | 64 | 137 | 7.26e-12 | 60.5 |
Find 59 sgRNAs with CRISPR-Local
Find 64 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCATGAAGTAACCGATTTC+AGG | 0.232378 | tig0018511:+207065 | Msa1367260:CDS |
| GTCGCAAGCGTTTGAGAATC+AGG | 0.306206 | tig0018511:+207195 | Msa1367260:CDS |
| CAATTTCTCTCCCGGCGATT+GGG | 0.307565 | tig0018511:+207132 | Msa1367260:CDS |
| GGTTCCGCCGCATGAGTATT+TGG | 0.311065 | tig0018511:+207375 | Msa1367260:CDS |
| TTTGGCGCGTGGCCGGAAAA+TGG | 0.357971 | tig0018511:+207393 | Msa1367260:CDS |
| CCGGAAAATGGCGGCAAATT+CGG | 0.361903 | tig0018511:+207405 | Msa1367260:CDS |
| CACATCTTCTTCCCTGAAAT+CGG | 0.365661 | tig0018511:-207077 | None:intergenic |
| AACCGAAACGAACGGTTGTT+AGG | 0.366911 | tig0018511:+207013 | Msa1367260:CDS |
| CAACCGTTCGTTTCGGTTGG+TGG | 0.379141 | tig0018511:-207008 | None:intergenic |
| GGTGGAATCGTTGCATGATA+TGG | 0.383426 | tig0018511:+207330 | Msa1367260:CDS |
| GGGGTGGGTCGGACCTTAAA+AGG | 0.389495 | tig0018511:+207436 | Msa1367260:CDS |
| TTCCTAACAACCGTTCGTTT+CGG | 0.395593 | tig0018511:-207015 | None:intergenic |
| GTGCTGATGTTGCAACGTTC+CGG | 0.398619 | tig0018511:-207264 | None:intergenic |
| TCAATTTCTCTCCCGGCGAT+TGG | 0.413239 | tig0018511:+207131 | Msa1367260:CDS |
| GACGGGTTCGTGATGCTGTT+TGG | 0.413527 | tig0018511:+207470 | Msa1367260:CDS |
| CTCCAATCCGGCACGTTCAC+CGG | 0.413829 | tig0018511:-207286 | None:intergenic |
| CTCAACCATCGAACCCGGTT+TGG | 0.416497 | tig0018511:-207495 | None:intergenic |
| GATGCTGTTTGGAACCAAAC+CGG | 0.441060 | tig0018511:+207481 | Msa1367260:CDS |
| ATGTTGCAACGTTCCGGTAC+TGG | 0.447319 | tig0018511:-207258 | None:intergenic |
| CACCGGTGAACGTGCCGGAT+TGG | 0.454006 | tig0018511:+207284 | Msa1367260:CDS |
| GAATCGTTCACCACCAGTAC+CGG | 0.485009 | tig0018511:+207245 | Msa1367260:CDS |
| ATGAGTATTTGGCGCGTGGC+CGG | 0.490622 | tig0018511:+207386 | Msa1367260:CDS |
| ATGCTGTTTGGAACCAAACC+GGG | 0.500659 | tig0018511:+207482 | Msa1367260:CDS |
| CGGAGTATCTTACTCCAATC+CGG | 0.504693 | tig0018511:-207298 | None:intergenic |
| TAAGATACTCCGAGTTGAAT+CGG | 0.506960 | tig0018511:+207309 | Msa1367260:CDS |
| TCATGAAGTAACCGATTTCA+GGG | 0.508081 | tig0018511:+207066 | Msa1367260:CDS |
| TAACAACCGTTCGTTTCGGT+TGG | 0.515395 | tig0018511:-207011 | None:intergenic |
| TGCGCGTGAATCCCAATCGC+CGG | 0.518977 | tig0018511:-207143 | None:intergenic |
| GATTCTCAAACGCTTGCGAC+AGG | 0.525300 | tig0018511:-207192 | None:intergenic |
| AAAAGGCCGTGATTTGAGAC+GGG | 0.530895 | tig0018511:+207453 | Msa1367260:CDS |
| TATGGATGATGATAACGAAT+CGG | 0.540008 | tig0018511:+207348 | Msa1367260:CDS |
| TGGAACCAAACCGGGTTCGA+TGG | 0.549508 | tig0018511:+207490 | Msa1367260:CDS |
| CACAACGTCAATTTCTCTCC+CGG | 0.549711 | tig0018511:+207124 | Msa1367260:CDS |
| TAAAAGGCCGTGATTTGAGA+CGG | 0.552056 | tig0018511:+207452 | Msa1367260:CDS |
| GGTTACTTCATGAGTGGTGG+TGG | 0.557686 | tig0018511:-207056 | None:intergenic |
| GTCGCTAAGTACCATGGCGA+AGG | 0.565479 | tig0018511:+206973 | None:intergenic |
| CACGAACCCGTCTCAAATCA+CGG | 0.568944 | tig0018511:-207459 | None:intergenic |
| TGATGATAACGAATCGGAGA+TGG | 0.569605 | tig0018511:+207354 | Msa1367260:CDS |
| CAAACCGGGTTCGATGGTTG+AGG | 0.576026 | tig0018511:+207496 | Msa1367260:CDS |
| GTGGTCACGATCTTCAACCA+TGG | 0.577498 | tig0018511:-207104 | None:intergenic |
| CGCGCCAAATACTCATGCGG+CGG | 0.577795 | tig0018511:-207379 | None:intergenic |
| ATCAGCACCGGTGAACGTGC+CGG | 0.584228 | tig0018511:+207279 | Msa1367260:CDS |
| TCCACCTCAACCATCGAACC+CGG | 0.586804 | tig0018511:-207500 | None:intergenic |
| GGCGCGTGGCCGGAAAATGG+CGG | 0.591649 | tig0018511:+207396 | Msa1367260:CDS |
| GAATTTGCGACCCTTCGCCA+TGG | 0.599300 | tig0018511:-206984 | None:intergenic |
| CCGCATGAGTATTTGGCGCG+TGG | 0.607155 | tig0018511:+207382 | Msa1367260:CDS |
| GAACGTTGCAACATCAGCAC+CGG | 0.627010 | tig0018511:+207267 | Msa1367260:CDS |
| GGAAGAAGATGTGTGGTCCA+TGG | 0.635452 | tig0018511:+207087 | Msa1367260:CDS |
| ACGATTCCACCGATTCAACT+CGG | 0.637845 | tig0018511:-207318 | None:intergenic |
| TCGCTAAGTACCATGGCGAA+GGG | 0.643376 | tig0018511:+206974 | None:intergenic |
| CCACGCGCCAAATACTCATG+CGG | 0.647845 | tig0018511:-207382 | None:intergenic |
| ATCGGTTACTTCATGAGTGG+TGG | 0.648620 | tig0018511:-207059 | None:intergenic |
| CATTCACGTCGTCACAACCA+CGG | 0.652333 | tig0018511:+207166 | Msa1367260:CDS |
| CGGGAGAGAAATTGACGTTG+TGG | 0.653823 | tig0018511:-207123 | None:intergenic |
| TCACCACCAACCGAAACGAA+CGG | 0.658770 | tig0018511:+207005 | Msa1367260:CDS |
| TTGCAACGTTCCGGTACTGG+TGG | 0.660475 | tig0018511:-207255 | None:intergenic |
| GATACTCCGAGTTGAATCGG+TGG | 0.676763 | tig0018511:+207312 | Msa1367260:CDS |
| GAAATCGGTTACTTCATGAG+TGG | 0.682994 | tig0018511:-207062 | None:intergenic |
| ATTTCAGGGAAGAAGATGTG+TGG | 0.693930 | tig0018511:+207080 | Msa1367260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TATGGATGATGATAACGAAT+CGG | + | tig0018511:207348-207367 | Msa1367260:CDS | 30.0% |
| ! | TCATGAAGTAACCGATTTCA+GGG | + | tig0018511:207066-207085 | Msa1367260:CDS | 35.0% |
| ! | TAAGATACTCCGAGTTGAAT+CGG | + | tig0018511:207309-207328 | Msa1367260:CDS | 35.0% |
| TTCCTAACAACCGTTCGTTT+CGG | - | tig0018511:207018-207037 | None:intergenic | 40.0% | |
| GAAATCGGTTACTTCATGAG+TGG | - | tig0018511:207065-207084 | None:intergenic | 40.0% | |
| ! | CTCATGAAGTAACCGATTTC+AGG | + | tig0018511:207065-207084 | Msa1367260:CDS | 40.0% |
| CACATCTTCTTCCCTGAAAT+CGG | - | tig0018511:207080-207099 | None:intergenic | 40.0% | |
| ATTTCAGGGAAGAAGATGTG+TGG | + | tig0018511:207080-207099 | Msa1367260:CDS | 40.0% | |
| ! | TGATGATAACGAATCGGAGA+TGG | + | tig0018511:207354-207373 | Msa1367260:CDS | 40.0% |
| ! | TCTCAAATCACGGCCTTTTA+AGG | - | tig0018511:207452-207471 | None:intergenic | 40.0% |
| TAAAAGGCCGTGATTTGAGA+CGG | + | tig0018511:207452-207471 | Msa1367260:CDS | 40.0% | |
| TAACAACCGTTCGTTTCGGT+TGG | - | tig0018511:207014-207033 | None:intergenic | 45.0% | |
| AACCGAAACGAACGGTTGTT+AGG | + | tig0018511:207013-207032 | Msa1367260:CDS | 45.0% | |
| ATCGGTTACTTCATGAGTGG+TGG | - | tig0018511:207062-207081 | None:intergenic | 45.0% | |
| CACAACGTCAATTTCTCTCC+CGG | + | tig0018511:207124-207143 | Msa1367260:CDS | 45.0% | |
| ! | CGGAGTATCTTACTCCAATC+CGG | - | tig0018511:207301-207320 | None:intergenic | 45.0% |
| !! | ACGATTCCACCGATTCAACT+CGG | - | tig0018511:207321-207340 | None:intergenic | 45.0% |
| GGTGGAATCGTTGCATGATA+TGG | + | tig0018511:207330-207349 | Msa1367260:CDS | 45.0% | |
| ! | CGGCAAATTCGGTTTTCGAA+GGG | + | tig0018511:207416-207435 | Msa1367260:CDS | 45.0% |
| ! | GGCAAATTCGGTTTTCGAAG+GGG | + | tig0018511:207417-207436 | Msa1367260:CDS | 45.0% |
| ! | AAATTCGGTTTTCGAAGGGG+TGG | + | tig0018511:207420-207439 | Msa1367260:CDS | 45.0% |
| ! | AATTCGGTTTTCGAAGGGGT+GGG | + | tig0018511:207421-207440 | Msa1367260:CDS | 45.0% |
| ! | AAAAGGCCGTGATTTGAGAC+GGG | + | tig0018511:207453-207472 | Msa1367260:CDS | 45.0% |
| ! | GATGCTGTTTGGAACCAAAC+CGG | + | tig0018511:207481-207500 | Msa1367260:CDS | 45.0% |
| ! | ATGCTGTTTGGAACCAAACC+GGG | + | tig0018511:207482-207501 | Msa1367260:CDS | 45.0% |
| TCACCACCAACCGAAACGAA+CGG | + | tig0018511:207005-207024 | Msa1367260:CDS | 50.0% | |
| GGTTACTTCATGAGTGGTGG+TGG | - | tig0018511:207059-207078 | None:intergenic | 50.0% | |
| GGAAGAAGATGTGTGGTCCA+TGG | + | tig0018511:207087-207106 | Msa1367260:CDS | 50.0% | |
| GTGGTCACGATCTTCAACCA+TGG | - | tig0018511:207107-207126 | None:intergenic | 50.0% | |
| CGGGAGAGAAATTGACGTTG+TGG | - | tig0018511:207126-207145 | None:intergenic | 50.0% | |
| TCAATTTCTCTCCCGGCGAT+TGG | + | tig0018511:207131-207150 | Msa1367260:CDS | 50.0% | |
| CAATTTCTCTCCCGGCGATT+GGG | + | tig0018511:207132-207151 | Msa1367260:CDS | 50.0% | |
| CATTCACGTCGTCACAACCA+CGG | + | tig0018511:207166-207185 | Msa1367260:CDS | 50.0% | |
| GATTCTCAAACGCTTGCGAC+AGG | - | tig0018511:207195-207214 | None:intergenic | 50.0% | |
| GTCGCAAGCGTTTGAGAATC+AGG | + | tig0018511:207195-207214 | Msa1367260:CDS | 50.0% | |
| GAATCGTTCACCACCAGTAC+CGG | + | tig0018511:207245-207264 | Msa1367260:CDS | 50.0% | |
| ATGTTGCAACGTTCCGGTAC+TGG | - | tig0018511:207261-207280 | None:intergenic | 50.0% | |
| ! | GTGCTGATGTTGCAACGTTC+CGG | - | tig0018511:207267-207286 | None:intergenic | 50.0% |
| GAACGTTGCAACATCAGCAC+CGG | + | tig0018511:207267-207286 | Msa1367260:CDS | 50.0% | |
| ! | GATACTCCGAGTTGAATCGG+TGG | + | tig0018511:207312-207331 | Msa1367260:CDS | 50.0% |
| !! | CCGAATTTGCCGCCATTTTC+CGG | - | tig0018511:207408-207427 | None:intergenic | 50.0% |
| CCGGAAAATGGCGGCAAATT+CGG | + | tig0018511:207405-207424 | Msa1367260:CDS | 50.0% | |
| ! | GCGGCAAATTCGGTTTTCGA+AGG | + | tig0018511:207415-207434 | Msa1367260:CDS | 50.0% |
| CACGAACCCGTCTCAAATCA+CGG | - | tig0018511:207462-207481 | None:intergenic | 50.0% | |
| CAACCGTTCGTTTCGGTTGG+TGG | - | tig0018511:207011-207030 | None:intergenic | 55.0% | |
| ! | TTGCAACGTTCCGGTACTGG+TGG | - | tig0018511:207258-207277 | None:intergenic | 55.0% |
| GGTTCCGCCGCATGAGTATT+TGG | + | tig0018511:207375-207394 | Msa1367260:CDS | 55.0% | |
| CCACGCGCCAAATACTCATG+CGG | - | tig0018511:207385-207404 | None:intergenic | 55.0% | |
| ATGAGTATTTGGCGCGTGGC+CGG | + | tig0018511:207386-207405 | Msa1367260:CDS | 55.0% | |
| ! | GACGGGTTCGTGATGCTGTT+TGG | + | tig0018511:207470-207489 | Msa1367260:CDS | 55.0% |
| TGGAACCAAACCGGGTTCGA+TGG | + | tig0018511:207490-207509 | Msa1367260:CDS | 55.0% | |
| TGCGCGTGAATCCCAATCGC+CGG | - | tig0018511:207146-207165 | None:intergenic | 60.0% | |
| TCACGTCGTCACAACCACGG+CGG | + | tig0018511:207169-207188 | Msa1367260:CDS | 60.0% | |
| !! | ATCAGCACCGGTGAACGTGC+CGG | + | tig0018511:207279-207298 | Msa1367260:CDS | 60.0% |
| CTCCAATCCGGCACGTTCAC+CGG | - | tig0018511:207289-207308 | None:intergenic | 60.0% | |
| CGCGCCAAATACTCATGCGG+CGG | - | tig0018511:207382-207401 | None:intergenic | 60.0% | |
| CCGCATGAGTATTTGGCGCG+TGG | + | tig0018511:207382-207401 | Msa1367260:CDS | 60.0% | |
| TTTGGCGCGTGGCCGGAAAA+TGG | + | tig0018511:207393-207412 | Msa1367260:CDS | 60.0% | |
| ! | CGGTTTTCGAAGGGGTGGGT+CGG | + | tig0018511:207425-207444 | Msa1367260:CDS | 60.0% |
| GGGGTGGGTCGGACCTTAAA+AGG | + | tig0018511:207436-207455 | Msa1367260:CDS | 60.0% | |
| GCGCGTGAATCCCAATCGCC+GGG | - | tig0018511:207145-207164 | None:intergenic | 65.0% | |
| CACCGGTGAACGTGCCGGAT+TGG | + | tig0018511:207284-207303 | Msa1367260:CDS | 65.0% | |
| GGCGCGTGGCCGGAAAATGG+CGG | + | tig0018511:207396-207415 | Msa1367260:CDS | 70.0% | |
| ACGCTTGCGACAGGCCGCCG+TGG | - | tig0018511:207186-207205 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018511 | gene | 206986 | 207516 | 206986 | ID=Msa1367260;Name=Msa1367260 |
| tig0018511 | mRNA | 206986 | 207516 | 206986 | ID=Msa1367260-mRNA-1;Parent=Msa1367260;Name=Msa1367260-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|176 |
| tig0018511 | exon | 206986 | 207516 | 206986 | ID=Msa1367260-mRNA-1:exon:15380;Parent=Msa1367260-mRNA-1 |
| tig0018511 | CDS | 206986 | 207516 | 206986 | ID=Msa1367260-mRNA-1:cds;Parent=Msa1367260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
