AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0362160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0362160 MtrunA17_Chr3g0101141 96.219 529 20 0 76 604 14 542 0.0 1060
Msa0362160 MtrunA17_Chr5g0445331 68.165 534 146 9 78 604 16 532 0.0 718
Msa0362160 MtrunA17_Chr5g0447691 58.148 540 214 5 74 604 8 544 0.0 648
Msa0362160 MtrunA17_Chr4g0076091 49.267 546 239 8 78 603 15 542 4.20e-177 513
Msa0362160 MtrunA17_Chr2g0319091 58.871 372 153 0 232 603 207 578 1.56e-167 489
Msa0362160 MtrunA17_Chr2g0290241 57.292 384 163 1 222 604 42 425 1.29e-164 476
Msa0362160 MtrunA17_Chr1g0159461 50.000 370 185 0 235 604 223 592 7.62e-140 419
Msa0362160 MtrunA17_Chr3g0125811 49.081 381 193 1 224 604 191 570 1.33e-136 410
Msa0362160 MtrunA17_Chr7g0224271 33.564 578 316 13 56 604 135 673 4.90e-80 266
Msa0362160 MtrunA17_Chr8g0376381 35.294 374 214 9 238 604 170 522 3.12e-65 223
Msa0362160 MtrunA17_Chr2g0306641 36.573 391 221 11 225 604 113 487 6.91e-64 218
Msa0362160 MtrunA17_Chr3g0110971 35.476 389 216 11 234 604 216 587 3.17e-63 219
Msa0362160 MtrunA17_Chr2g0328381 29.388 490 309 12 139 603 163 640 1.39e-61 215
Msa0362160 MtrunA17_Chr4g0031721 30.822 438 287 8 176 603 252 683 1.50e-61 216
Msa0362160 MtrunA17_Chr7g0238891 28.539 438 300 6 171 604 312 740 2.70e-61 216
Msa0362160 MtrunA17_Chr4g0031711 32.540 378 246 6 233 603 357 732 6.10e-61 215
Msa0362160 MtrunA17_Chr8g0357601 32.461 382 241 6 233 604 178 552 9.56e-61 211
Msa0362160 MtrunA17_Chr2g0328391 31.496 381 244 8 233 603 295 668 6.49e-59 209
Msa0362160 MtrunA17_Chr6g0468561 37.464 347 188 8 272 604 331 662 1.23e-58 207
Msa0362160 MtrunA17_Chr2g0328341 29.436 479 318 10 139 603 165 637 2.34e-58 206
Msa0362160 MtrunA17_Chr7g0236851 34.897 341 208 6 270 603 323 656 5.73e-58 206
Msa0362160 MtrunA17_Chr4g0031701 31.016 374 253 3 233 601 250 623 3.05e-57 203
Msa0362160 MtrunA17_Chr4g0031731 31.635 373 250 3 233 600 250 622 6.97e-57 202
Msa0362160 MtrunA17_Chr7g0245601 34.247 365 225 6 241 604 442 792 6.01e-56 202
Msa0362160 MtrunA17_Chr4g0031741 31.733 375 247 7 233 603 280 649 3.77e-55 198
Msa0362160 MtrunA17_Chr4g0057891 29.688 384 248 5 234 604 146 520 4.17e-55 195
Msa0362160 MtrunA17_Chr2g0328411 29.177 401 277 4 204 603 259 653 7.60e-53 192
Msa0362160 MtrunA17_Chr3g0085681 27.098 417 248 4 238 604 26 436 1.73e-52 186
Msa0362160 MtrunA17_Chr4g0039661 35.457 361 212 11 250 604 210 555 1.15e-50 184
Msa0362160 MtrunA17_Chr4g0038761 32.973 370 227 9 241 604 88 442 8.79e-50 179
Msa0362160 MtrunA17_Chr4g0057291 30.769 390 240 11 231 603 285 661 1.26e-49 183
Msa0362160 MtrunA17_Chr2g0328361 28.458 506 290 16 123 603 156 614 1.31e-49 182
Msa0362160 MtrunA17_Chr2g0328431 29.759 373 256 5 233 603 285 653 1.06e-48 180
Msa0362160 MtrunA17_Chr5g0401131 29.412 391 239 12 237 604 114 490 1.26e-46 171
Msa0362160 MtrunA17_Chr2g0328401 31.288 326 215 4 233 555 286 605 3.04e-46 172
Msa0362160 MtrunA17_Chr1g0200401 28.993 407 229 12 234 604 77 459 7.26e-43 160
Msa0362160 MtrunA17_Chr1g0183641 30.769 377 236 12 233 603 119 476 1.96e-42 159
Msa0362160 MtrunA17_Chr3g0085361 26.765 340 193 4 314 604 18 350 4.14e-40 149
Msa0362160 MtrunA17_Chr3g0114841 30.376 372 222 10 256 603 141 499 5.06e-40 153
Msa0362160 MtrunA17_Chr5g0424131 31.694 366 223 11 256 603 142 498 5.16e-40 153
Msa0362160 MtrunA17_Chr2g0328371 32.787 244 159 3 318 560 12 251 4.77e-39 144
Msa0362160 MtrunA17_Chr2g0329591 27.551 392 248 10 236 604 73 451 2.20e-35 139
Msa0362160 MtrunA17_Chr2g0294461 27.506 389 254 9 234 604 207 585 4.01e-35 140
Msa0362160 MtrunA17_Chr7g0230731 27.200 375 250 8 236 604 371 728 1.21e-32 133
Msa0362160 MtrunA17_Chr5g0401421 25.293 427 249 12 234 603 32 445 2.36e-32 130
Msa0362160 MtrunA17_Chr7g0230771 27.200 375 250 8 236 604 374 731 3.46e-32 132
Msa0362160 MtrunA17_Chr4g0053901 24.586 423 270 9 228 603 47 467 4.33e-32 129
Msa0362160 MtrunA17_Chr2g0294471 25.521 384 265 8 234 604 201 576 3.67e-31 128
Msa0362160 MtrunA17_Chr4g0012071 25.521 384 244 12 236 604 195 551 4.31e-30 124
Msa0362160 MtrunA17_Chr7g0270031 24.672 381 267 9 233 604 185 554 9.40e-29 120
Msa0362160 MtrunA17_Chr4g0038851 30.045 223 148 3 222 442 32 248 2.99e-28 118
Msa0362160 MtrunA17_Chr4g0038851 37.589 141 87 1 465 604 329 469 5.78e-26 111
Msa0362160 MtrunA17_Chr5g0396491 28.774 212 144 2 234 444 53 258 5.32e-27 114
Msa0362160 MtrunA17_Chr5g0396491 34.752 141 91 1 465 604 338 478 5.36e-23 102
Msa0362160 MtrunA17_Chr8g0383981 28.212 397 246 17 222 603 123 495 8.55e-27 114
Msa0362160 MtrunA17_Chr1g0194621 25.143 350 239 9 268 604 179 518 1.98e-25 110
Msa0362160 MtrunA17_Chr8g0344101 25.558 403 244 16 235 604 221 600 5.71e-24 106
Msa0362160 MtrunA17_Chr8g0373561 23.969 388 255 14 233 604 178 541 2.34e-17 85.5
Msa0362160 MtrunA17_Chr2g0323111 22.857 175 133 2 430 603 132 305 1.23e-14 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0362160 AT1G50600.2 62.640 447 163 3 158 604 159 601 0.0 585
Msa0362160 AT1G50600.1 62.640 447 163 3 158 604 155 597 0.0 585
Msa0362160 AT1G50600.3 62.640 447 163 3 158 604 84 526 0.0 583
Msa0362160 AT5G48150.1 64.554 426 148 2 180 604 67 490 0.0 580
Msa0362160 AT5G48150.4 64.554 426 148 2 180 604 67 490 0.0 580
Msa0362160 AT5G48150.2 64.554 426 148 2 180 604 67 490 0.0 580
Msa0362160 AT5G48150.3 64.554 426 148 2 180 604 67 490 0.0 580
Msa0362160 AT2G04890.1 59.179 414 162 1 191 604 7 413 0.0 519
Msa0362160 AT4G17230.1 49.905 525 234 9 89 604 21 525 2.23e-166 485
Msa0362160 AT4G17230.2 49.905 525 234 9 89 604 21 525 2.23e-166 485
Msa0362160 AT1G21450.1 42.430 502 265 5 125 604 94 593 1.23e-135 409
Msa0362160 AT1G66350.1 36.533 375 214 10 234 604 152 506 1.20e-67 229
Msa0362160 AT5G17490.1 36.074 377 218 10 234 604 157 516 2.50e-67 228
Msa0362160 AT5G52510.1 38.218 348 190 7 272 604 303 640 2.49e-66 228
Msa0362160 AT1G07530.1 33.690 374 246 2 232 603 391 764 5.34e-66 230
Msa0362160 AT1G14920.1 35.433 381 216 10 234 604 169 529 1.40e-65 224
Msa0362160 AT3G03450.1 35.200 375 230 8 234 604 180 545 1.88e-64 221
Msa0362160 AT2G01570.1 35.904 376 221 9 234 604 221 581 1.68e-63 219
Msa0362160 AT2G29060.2 32.800 375 248 3 233 603 280 654 2.31e-62 218
Msa0362160 AT2G29060.1 32.800 375 248 3 233 603 317 691 4.61e-62 218
Msa0362160 AT3G46600.2 30.108 372 258 2 234 604 1 371 3.03e-54 189
Msa0362160 AT5G59450.1 28.191 376 266 3 233 604 223 598 3.90e-54 194
Msa0362160 AT5G66770.1 33.952 377 234 8 234 604 217 584 7.51e-54 193
Msa0362160 AT3G46600.1 30.295 373 258 2 233 604 208 579 7.69e-54 193
Msa0362160 AT3G46600.3 30.295 373 258 2 233 604 176 547 1.16e-53 192
Msa0362160 AT2G29065.1 31.332 383 248 8 233 603 248 627 7.94e-53 191
Msa0362160 AT3G54220.1 31.235 413 265 8 196 603 251 649 1.93e-52 191
Msa0362160 AT2G37650.2 28.989 376 258 5 233 604 331 701 3.80e-52 191
Msa0362160 AT2G37650.1 28.989 376 258 5 233 604 343 713 5.31e-52 191
Msa0362160 AT3G50650.1 34.986 363 218 7 251 604 189 542 9.83e-52 187
Msa0362160 AT1G50420.1 27.483 433 245 8 234 604 54 479 4.46e-51 183
Msa0362160 AT1G07520.2 29.676 401 269 7 212 603 132 528 4.74e-50 182
Msa0362160 AT1G07520.4 29.676 401 269 7 212 603 132 528 4.74e-50 182
Msa0362160 AT1G07520.3 29.676 401 269 7 212 603 297 693 1.43e-49 183
Msa0362160 AT1G07520.1 29.676 401 269 7 212 603 296 692 1.59e-49 183
Msa0362160 AT5G41920.1 32.637 383 224 11 234 604 40 400 3.93e-49 176
Msa0362160 AT4G37650.1 27.525 396 247 11 237 604 146 529 4.48e-44 165
Msa0362160 AT1G63100.2 30.591 389 244 7 233 603 273 653 3.61e-42 162
Msa0362160 AT1G55580.1 28.019 414 246 9 234 604 41 445 4.55e-42 157
Msa0362160 AT1G63100.1 30.591 389 244 7 233 603 248 628 5.32e-42 161
Msa0362160 AT3G49950.1 25.253 396 255 9 234 603 27 407 1.22e-35 139
Msa0362160 AT4G08250.1 29.412 306 200 6 306 603 179 476 6.18e-34 135
Msa0362160 AT3G60630.1 28.065 310 196 9 308 604 327 622 6.78e-26 112
Msa0362160 AT2G45160.1 25.562 356 217 13 269 604 312 639 1.53e-24 108
Msa0362160 AT4G00150.1 25.064 391 232 16 234 604 205 554 2.64e-23 104
Msa0362160 AT3G13840.1 25.000 376 255 10 235 600 146 504 2.70e-21 98.2
Msa0362160 AT4G36710.1 24.173 393 249 13 233 604 121 485 6.83e-20 93.6
Msa0362160 AT5G67411.1 29.082 196 122 6 357 541 9 198 2.40e-14 72.8

Find 129 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATGATCCATATTTGTTTA+AGG 0.184789 3_1:-53032611 Msa0362160:intron
CGATCAATTGGAAAATTTCT+AGG 0.196345 3_1:-53030529 Msa0362160:CDS
CGCAAAATAGTATCCGTTTC+AGG 0.225431 3_1:-53029850 Msa0362160:CDS
ATACCTGTTATTCTAATCTT+TGG 0.235841 3_1:+53029523 None:intergenic
CTGCAAGAACGGAGCGTTAT+TGG 0.252017 3_1:+53029195 None:intergenic
GTGCACCATCTCTCTCTTCT+AGG 0.256808 3_1:+53028891 None:intergenic
ATCTGCTTCGTTCTTATTAG+AGG 0.270897 3_1:-53029998 Msa0362160:CDS
CGTGAGTAGAGGGAGAATTT+TGG 0.279803 3_1:+53030226 None:intergenic
TCACTTACCTTAAACAAATA+TGG 0.286989 3_1:+53032604 None:intergenic
TAACATAATTCCGGATGATA+TGG 0.328202 3_1:-53032683 Msa0362160:CDS
CGATTTGTAGATTGTACTTC+CGG 0.341558 3_1:+53029765 None:intergenic
ATCTTATTGTTTCTTGTGCT+TGG 0.342571 3_1:-53028844 Msa0362160:CDS
AGCAGATTCTTCTTGAACTT+TGG 0.342587 3_1:+53030014 None:intergenic
CAGGCTCTTGCTCGCCGCCC+TGG 0.348966 3_1:-53029553 Msa0362160:CDS
TAAGGCTGGTAACATAATTC+CGG 0.358698 3_1:-53032692 Msa0362160:CDS
CCTCCAAAGATTAGAATAAC+AGG 0.365174 3_1:-53029526 Msa0362160:CDS
GATGAGAAGGATAGAATGTT+TGG 0.365693 3_1:+53030310 None:intergenic
GACGATGATTTCCGATCAAT+TGG 0.365779 3_1:-53030541 Msa0362160:CDS
CACTTGAATTCAACTTTCCT+TGG 0.366070 3_1:+53030566 None:intergenic
GTTTCGAAGATTGCCTCTTC+CGG 0.372158 3_1:-53029784 Msa0362160:CDS
ATATGTCCGTACTTTAAATT+CGG 0.373248 3_1:-53029682 Msa0362160:CDS
AGAGATGGTGCACTGTTTCT+TGG 0.374714 3_1:-53028881 Msa0362160:CDS
CAGGGCGGCGAGCAAGAGCC+TGG 0.387866 3_1:+53029554 None:intergenic
CATTCACTTGAATTTGTCAA+TGG 0.402839 3_1:-53030159 Msa0362160:CDS
CTAATCTTTGGAGGTCCTCC+AGG 0.409735 3_1:+53029535 None:intergenic
TTCACCGCCACAGCTTCATT+AGG 0.419761 3_1:+53029346 None:intergenic
TAATGTCGAACAGCACTGTT+TGG 0.423158 3_1:-53029089 Msa0362160:CDS
GTAGAACCTGGACTATTGTT+AGG 0.425781 3_1:+53030195 None:intergenic
CTTGATTGAAGAATTGATGA+AGG 0.426007 3_1:+53028946 None:intergenic
ATCCTCTCTTTGTGATCCCT+TGG 0.427208 3_1:+53029112 None:intergenic
AACATCAATTGATTCATAAA+CGG 0.428207 3_1:+53029141 None:intergenic
CCTGTTATTCTAATCTTTGG+AGG 0.435815 3_1:+53029526 None:intergenic
GCTCACTCATCTTATGCCTT+AGG 0.446845 3_1:+53030088 None:intergenic
TCATCGTATGCCCGCGGTGG+GGG 0.447317 3_1:-53029487 Msa0362160:CDS
GATCAATTGGAAAATTTCTA+GGG 0.452201 3_1:-53030528 Msa0362160:CDS
CAATTGATGTTGTTCTTCCA+AGG 0.452748 3_1:-53029129 Msa0362160:CDS
TTCGGATATATGTCTGCAAA+TGG 0.452855 3_1:-53029664 Msa0362160:CDS
ATGGATCATCCCACAAATAG+TGG 0.453774 3_1:+53032623 None:intergenic
AGGATTCAAACCACTATTTG+TGG 0.460837 3_1:-53032633 Msa0362160:CDS
GGCGAGCAAGAGCCTGGATT+AGG 0.464253 3_1:+53029560 None:intergenic
TTGTCTAGATTCTCAATTGA+GGG 0.471983 3_1:+53030357 None:intergenic
TGCTTGTTGAAGCAGATTCA+AGG 0.473275 3_1:+53030265 None:intergenic
ATGAAGGAGCTCAATGGATA+AGG 0.474746 3_1:+53028962 None:intergenic
TGAATGGTCACACTTTCATC+TGG 0.476627 3_1:+53029298 None:intergenic
TGGTACATGATGTAGCATAA+TGG 0.479324 3_1:+53029318 None:intergenic
GTAGATTGTACTTCCGGAAG+AGG 0.481683 3_1:+53029771 None:intergenic
CAATTTGAAAATCAATTATG+TGG 0.486415 3_1:+53029605 None:intergenic
CTAACAGCATGGAACTCAAA+TGG 0.487453 3_1:+53029412 None:intergenic
TGTTCTAGAGTTTGATGAGA+AGG 0.490850 3_1:+53030297 None:intergenic
TCAACTAGAGTCACCACCTT+AGG 0.493149 3_1:+53029232 None:intergenic
ATTCATCGTATGCCCGCGGT+GGG 0.494640 3_1:-53029489 Msa0362160:CDS
GGTGAGAAACCGTGAGTAGA+GGG 0.496435 3_1:+53030216 None:intergenic
AAGTAAGAATCCTCCGCCTC+AGG 0.498080 3_1:+53030132 None:intergenic
ATCTCTAGCATCTCTACGTT+AGG 0.500658 3_1:+53030045 None:intergenic
ATGGTGCACTGTTTCTTGGT+TGG 0.503499 3_1:-53028877 Msa0362160:CDS
CAATGGTTCACCTGAGGCGG+AGG 0.504414 3_1:-53030142 Msa0362160:CDS
GTCACGAGCTTCTGAGTAAG+TGG 0.507829 3_1:-53029015 Msa0362160:CDS
TACGCTCCCAATCGTTCGAT+TGG 0.508907 3_1:+53029823 None:intergenic
AGGTAGTCCAATCGAACGAT+TGG 0.510381 3_1:-53029830 Msa0362160:CDS
GGATTCAAACCACTATTTGT+GGG 0.511991 3_1:-53032632 Msa0362160:CDS
CAAAATTCTCCCTCTACTCA+CGG 0.512747 3_1:-53030225 Msa0362160:CDS
TCAGTGGGTGAGCCTAATCC+AGG 0.518047 3_1:-53029572 Msa0362160:CDS
TGCACCATCTCTCTCTTCTA+GGG 0.519166 3_1:+53028892 None:intergenic
TCTTCGAGTCGCACCTCAGA+AGG 0.519582 3_1:+53029382 None:intergenic
TTCGATTGGACTACCTGAAA+CGG 0.520528 3_1:+53029837 None:intergenic
TTCATCGTATGCCCGCGGTG+GGG 0.523230 3_1:-53029488 Msa0362160:CDS
TTCTCACCTAACAATAGTCC+AGG 0.523328 3_1:-53030201 Msa0362160:CDS
TTAAAATGCAGCGAGCCTAC+TGG 0.529023 3_1:-53029742 Msa0362160:CDS
AATTGATGTTGTTCTTCCAA+GGG 0.531808 3_1:-53029128 Msa0362160:CDS
TGGTTCTGATCCATATCATC+CGG 0.537447 3_1:+53032673 None:intergenic
ACATGGAGATGGTATCTAGA+GGG 0.537613 3_1:-53029957 Msa0362160:CDS
TCTTATGCCTTAGGTCATCA+TGG 0.538147 3_1:+53030097 None:intergenic
GGTAGTCCAATCGAACGATT+GGG 0.538447 3_1:-53029829 Msa0362160:CDS
ATTGTCTAGATTCTCAATTG+AGG 0.540884 3_1:+53030356 None:intergenic
TGTCAATGGTTCACCTGAGG+CGG 0.541775 3_1:-53030145 Msa0362160:CDS
ATAGTCCAGGTTCTACGTTA+AGG 0.542222 3_1:-53030188 Msa0362160:CDS
AGCCATCGCGGAAGCTATGA+AGG 0.542662 3_1:-53029641 Msa0362160:CDS
TCGTGACAGGTTGCTGCGAT+TGG 0.544162 3_1:-53029269 Msa0362160:CDS
GGCTAAGCACATGTCTCCTA+AGG 0.546864 3_1:-53029248 Msa0362160:CDS
TCGACGAAACGCTGCAAGAA+CGG 0.547227 3_1:+53029184 None:intergenic
CTCCTTCATAGCTTCCGCGA+TGG 0.552554 3_1:+53029639 None:intergenic
CCATTCATAATCATCGTGAC+AGG 0.553760 3_1:-53029282 Msa0362160:CDS
TCGGTACGCTGCTATTGCCA+AGG 0.561282 3_1:-53030583 Msa0362160:CDS
TGAACTTAGTAGCTTGCGAA+GGG 0.564647 3_1:-53029054 Msa0362160:CDS
CCTGTCACGATGATTATGAA+TGG 0.565547 3_1:+53029282 None:intergenic
ATCATGACCATGATGACCTA+AGG 0.567502 3_1:-53030104 Msa0362160:CDS
TTCATAAAGTACATGCATGT+AGG 0.567692 3_1:+53029705 None:intergenic
ACGATTGGGAGCGTACATGT+TGG 0.575556 3_1:-53029815 Msa0362160:CDS
TATCGAGACAATTGAATGGA+TGG 0.577277 3_1:-53029884 Msa0362160:CDS
AGGTGAGAAACCGTGAGTAG+AGG 0.577735 3_1:+53030215 None:intergenic
AAGGCATAAGATGAGTGAGC+TGG 0.578063 3_1:-53030085 Msa0362160:CDS
ATGATATCGAGACAATTGAA+TGG 0.578703 3_1:-53029888 Msa0362160:CDS
GTGAACTTAGTAGCTTGCGA+AGG 0.579196 3_1:-53029055 Msa0362160:CDS
TCTTATTAGAGGCAGAGAAG+TGG 0.579922 3_1:-53029987 Msa0362160:CDS
ATTGGGAGCGTACATGTTGG+AGG 0.587024 3_1:-53029812 Msa0362160:CDS
TATTCATCGTATGCCCGCGG+TGG 0.589109 3_1:-53029490 Msa0362160:CDS
GCTCTTGCTCGCCGCCCTGG+AGG 0.590483 3_1:-53029550 Msa0362160:CDS
GAGCTGGAATCTGTTATGCT+CGG 0.590793 3_1:-53030069 Msa0362160:CDS
TTCCAAGGGATCACAAAGAG+AGG 0.599204 3_1:-53029114 Msa0362160:CDS
TGCGGCCTTAACGTAGAACC+TGG 0.605445 3_1:+53030183 None:intergenic
TAATCTTTGGAGGTCCTCCA+GGG 0.606773 3_1:+53029536 None:intergenic
TACGACTCGAGATTCTGTAC+AGG 0.608834 3_1:+53030387 None:intergenic
TGTTAGAGTGTATCCTTCTG+AGG 0.611616 3_1:-53029395 Msa0362160:CDS
AACATGGAGATGGTATCTAG+AGG 0.612916 3_1:-53029958 Msa0362160:CDS
TTATACTTGTGCAAAAGCAG+TGG 0.618641 3_1:-53029917 Msa0362160:CDS
CTTCTAGGGTGTAATGTCCA+CGG 0.620198 3_1:+53028906 None:intergenic
AAGGATACACTCTAACAGCA+TGG 0.621994 3_1:+53029401 None:intergenic
GAATTGATGAAGGAGCTCAA+TGG 0.624450 3_1:+53028956 None:intergenic
AATCTTCTCGAGAGCTACCG+TGG 0.627998 3_1:-53028923 Msa0362160:CDS
TCGTCCTAATGAAGCTGTGG+CGG 0.629870 3_1:-53029350 Msa0362160:CDS
ATTTGTCAATGGTTCACCTG+AGG 0.630937 3_1:-53030148 Msa0362160:CDS
ATATATCCGAATTTAAAGTA+CGG 0.633125 3_1:+53029676 None:intergenic
ATGACATGACTGCGCAAGCG+CGG 0.633313 3_1:+53029438 None:intergenic
ACAAATTCAAGTGAATGTTG+CGG 0.633662 3_1:+53030165 None:intergenic
CATGGAGATGGTATCTAGAG+GGG 0.636479 3_1:-53029956 Msa0362160:CDS
TGTTTGGCAGCTGTTATCAG+AGG 0.643018 3_1:+53030326 None:intergenic
GAAAGCAGTTCATTACCAGT+AGG 0.643103 3_1:+53029727 None:intergenic
AATTGGACAAGGAACTCAGT+GGG 0.647751 3_1:-53029587 Msa0362160:CDS
TAAGCACATGTCTCCTAAGG+TGG 0.649063 3_1:-53029245 Msa0362160:CDS
ACTTCGTCCTAATGAAGCTG+TGG 0.652136 3_1:-53029353 Msa0362160:CDS
TTGCGAAGGGGAAGAAAGAG+TGG 0.653404 3_1:-53029041 Msa0362160:CDS
GTCTGCAAATGGAGCCATCG+CGG 0.659747 3_1:-53029653 Msa0362160:CDS
ATGATATGGATCAGAACCAG+AGG 0.683276 3_1:-53032669 Msa0362160:CDS
GAACTTAGTAGCTTGCGAAG+GGG 0.697810 3_1:-53029053 Msa0362160:CDS
CATCGCGGAAGCTATGAAGG+AGG 0.707945 3_1:-53029638 Msa0362160:CDS
TCTTATTCATCGTATGCCCG+CGG 0.710163 3_1:-53029493 Msa0362160:CDS
TACACCCTAGAAGAGAGAGA+TGG 0.711736 3_1:-53028896 Msa0362160:CDS
AAATTGGACAAGGAACTCAG+TGG 0.723091 3_1:-53029588 Msa0362160:CDS
TCTTTGGAGGTCCTCCAGGG+CGG 0.760133 3_1:+53029539 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAGAAAATATATGTA+CGG + chr3_1:53029714-53029733 None:intergenic 10.0%
!! TATGGAAAGTTAATATATTA+GGG + chr3_1:53029278-53029297 None:intergenic 15.0%
!! TTATGGAAAGTTAATATATT+AGG + chr3_1:53029279-53029298 None:intergenic 15.0%
!! TTCAAATTAGATCAAATAAA+TGG + chr3_1:53029579-53029598 None:intergenic 15.0%
!! TAAACAACATCATATAAATA+AGG + chr3_1:53030069-53030088 None:intergenic 15.0%
!!! TATTTATATGATGTTGTTTA+AGG - chr3_1:53030069-53030088 Msa0362160:CDS 15.0%
!!! CTTTTTTATACTTTTTGATT+TGG - chr3_1:53030195-53030214 Msa0362160:CDS 15.0%
!! ACAAAAAATAAAACCATAAA+AGG + chr3_1:53030300-53030319 None:intergenic 15.0%
!!! ATATGTTTTCTTGATTAAAA+TGG + chr3_1:53030652-53030671 None:intergenic 15.0%
!!! AATCAAGAAAACATATTTTT+TGG - chr3_1:53030656-53030675 Msa0362160:intron 15.0%
!! TTAATTGAATTGTAACAAAT+AGG - chr3_1:53030761-53030780 Msa0362160:intron 15.0%
!! AACTACCCAATTAATTTATT+AGG - chr3_1:53029220-53029239 Msa0362160:CDS 20.0%
!! GTTTGCCTAATAAATTAATT+GGG + chr3_1:53029228-53029247 None:intergenic 20.0%
!! TGTTTGCCTAATAAATTAAT+TGG + chr3_1:53029229-53029248 None:intergenic 20.0%
!! TTATAAGTGAAAATGAGTTA+TGG + chr3_1:53029296-53029315 None:intergenic 20.0%
!! TTATGTATGATTTATCACTT+TGG + chr3_1:53029385-53029404 None:intergenic 20.0%
!!! TGTTAGTTGAGTTTTATTTT+AGG - chr3_1:53029512-53029531 Msa0362160:CDS 20.0%
!! AAAATATAATCTTCAATGCA+AGG + chr3_1:53029611-53029630 None:intergenic 20.0%
!! TTATAGAAATTTCACAGAAT+AGG - chr3_1:53029763-53029782 Msa0362160:CDS 20.0%
!! AGTTTAATTAAGATAAGAAG+AGG + chr3_1:53029956-53029975 None:intergenic 20.0%
!!! TGATAAGTGTTTTATTTTTC+TGG - chr3_1:53030110-53030129 Msa0362160:CDS 20.0%
!!! TTTTGATGAGTTTATGAAAA+TGG - chr3_1:53030218-53030237 Msa0362160:CDS 20.0%
!! TTTGATGAGTTTATGAAAAT+GGG - chr3_1:53030219-53030238 Msa0362160:CDS 20.0%
!!! TGTGTTAAAATTGATAGTAA+AGG - chr3_1:53030244-53030263 Msa0362160:CDS 20.0%
!!! TACTTTTTGATTTGTAGATT+TGG - chr3_1:53030320-53030339 Msa0362160:CDS 20.0%
!!! GACTAAAAAACTATTTTTAG+TGG + chr3_1:53030723-53030742 None:intergenic 20.0%
!! ATACAATATCTAACAGATAA+TGG + chr3_1:53030894-53030913 None:intergenic 20.0%
!!! ATATATCCGAATTTAAAGTA+CGG + chr3_1:53031868-53031887 None:intergenic 20.0%
!! CAATTTGAAAATCAATTATG+TGG + chr3_1:53031939-53031958 None:intergenic 20.0%
!!! CACATAATTGATTTTCAAAT+TGG - chr3_1:53031937-53031956 Msa0362160:intron 20.0%
!!! AACATCAATTGATTCATAAA+CGG + chr3_1:53032403-53032422 None:intergenic 20.0%
! TCACTTACCTTAAACAAATA+TGG + chr3_1:53028940-53028959 None:intergenic 25.0%
!! GTCTATCTCAAATTGATAAT+TGG - chr3_1:53029159-53029178 Msa0362160:CDS 25.0%
!!! AATTAATTGGGTAGTTTTGA+TGG + chr3_1:53029216-53029235 None:intergenic 25.0%
! GAAAGTTAATATATTAGGGA+CGG + chr3_1:53029274-53029293 None:intergenic 25.0%
!! CTCATTTTCACTTATAAGTA+AGG - chr3_1:53029299-53029318 Msa0362160:CDS 25.0%
! ATGATTTATCACTTTGGTTA+GGG + chr3_1:53029379-53029398 None:intergenic 25.0%
! TATGATTTATCACTTTGGTT+AGG + chr3_1:53029380-53029399 None:intergenic 25.0%
! AAATAGAGTTTCAAACTTCT+AGG - chr3_1:53029673-53029692 Msa0362160:CDS 25.0%
! TCTTAAAAAATATAGGGTGT+TGG - chr3_1:53029725-53029744 Msa0362160:CDS 25.0%
!! TTGTTTGTTAAAAACTTAGG+AGG + chr3_1:53029912-53029931 None:intergenic 25.0%
!! AGGTTGTTTGTTAAAAACTT+AGG + chr3_1:53029915-53029934 None:intergenic 25.0%
! ATTAAGATAAGAAGAGGTTA+TGG + chr3_1:53029950-53029969 None:intergenic 25.0%
!! TCAGATCAGATTTTCTTTTT+TGG - chr3_1:53030018-53030037 Msa0362160:CDS 25.0%
!! AATGATTTTGCATCCTTTTA+TGG - chr3_1:53030284-53030303 Msa0362160:CDS 25.0%
!!! AGATTTGGTTTTCAATTTGT+TGG - chr3_1:53030335-53030354 Msa0362160:CDS 25.0%
!!! GATTTGGTTTTCAATTTGTT+GGG - chr3_1:53030336-53030355 Msa0362160:CDS 25.0%
!!! ATTTGGTTTTCAATTTGTTG+GGG - chr3_1:53030337-53030356 Msa0362160:CDS 25.0%
! AATTGAAATTGAAATCCCTT+TGG - chr3_1:53030409-53030428 Msa0362160:intron 25.0%
! ATGTGAGAAAATTGTAACTT+TGG - chr3_1:53030551-53030570 Msa0362160:CDS 25.0%
! TTTAGTAGCTTCTTTAATTG+TGG + chr3_1:53030620-53030639 None:intergenic 25.0%
!! CTAGAAATTTTCCAATTGAT+CGG + chr3_1:53031014-53031033 None:intergenic 25.0%
! GATCAATTGGAAAATTTCTA+GGG - chr3_1:53031013-53031032 Msa0362160:intron 25.0%
! CAGAAACATGAAATTTCTTA+CGG - chr3_1:53031109-53031128 Msa0362160:intron 25.0%
! ATATGTCCGTACTTTAAATT+CGG - chr3_1:53031859-53031878 Msa0362160:intron 25.0%
!!! ATTGATTTTCAAATTGGACA+AGG - chr3_1:53031943-53031962 Msa0362160:intron 25.0%
! ATACCTGTTATTCTAATCTT+TGG + chr3_1:53032021-53032040 None:intergenic 25.0%
TAACATAATTCCGGATGATA+TGG - chr3_1:53028858-53028877 Msa0362160:CDS 30.0%
GGATGATCCATATTTGTTTA+AGG - chr3_1:53028930-53028949 Msa0362160:CDS 30.0%
! TTGTTTAAGGTAAGTGATGA+TGG - chr3_1:53028943-53028962 Msa0362160:CDS 30.0%
AGATCAAATAAATGGTGAGT+TGG + chr3_1:53029571-53029590 None:intergenic 30.0%
ATATAATCTTCAATGCAAGG+AGG + chr3_1:53029608-53029627 None:intergenic 30.0%
!!! TTGTTGAAGTGTTTTTGGTT+TGG + chr3_1:53029859-53029878 None:intergenic 30.0%
!!! GTGTTTTATTTTTCTGGTCA+TGG - chr3_1:53030116-53030135 Msa0362160:CDS 30.0%
!!! TTTTATTTTTCTGGTCATGG+TGG - chr3_1:53030119-53030138 Msa0362160:CDS 30.0%
!!! TTTTCAATTTGTTGGGGTTT+GGG - chr3_1:53030343-53030362 Msa0362160:CDS 30.0%
TGAGAAAATTGTAACTTTGG+AGG - chr3_1:53030554-53030573 Msa0362160:CDS 30.0%
GAGAAAATTGTAACTTTGGA+GGG - chr3_1:53030555-53030574 Msa0362160:CDS 30.0%
CGATCAATTGGAAAATTTCT+AGG - chr3_1:53031012-53031031 Msa0362160:intron 30.0%
TTGTCTAGATTCTCAATTGA+GGG + chr3_1:53031187-53031206 None:intergenic 30.0%
ATTGTCTAGATTCTCAATTG+AGG + chr3_1:53031188-53031207 None:intergenic 30.0%
ACAAATTCAAGTGAATGTTG+CGG + chr3_1:53031379-53031398 None:intergenic 30.0%
CATTCACTTGAATTTGTCAA+TGG - chr3_1:53031382-53031401 Msa0362160:intron 30.0%
ATGATATCGAGACAATTGAA+TGG - chr3_1:53031653-53031672 Msa0362160:intron 30.0%
TTCATAAAGTACATGCATGT+AGG + chr3_1:53031839-53031858 None:intergenic 30.0%
AATTGATGTTGTTCTTCCAA+GGG - chr3_1:53032413-53032432 Msa0362160:intron 30.0%
CTTGATTGAAGAATTGATGA+AGG + chr3_1:53032598-53032617 None:intergenic 30.0%
! ATCTTATTGTTTCTTGTGCT+TGG - chr3_1:53032697-53032716 Msa0362160:CDS 30.0%
TAAGGCTGGTAACATAATTC+CGG - chr3_1:53028849-53028868 Msa0362160:CDS 35.0%
!! CCTTGAAAAACTTTTTCCTC+TGG + chr3_1:53028891-53028910 None:intergenic 35.0%
! CCAGAGGAAAAAGTTTTTCA+AGG - chr3_1:53028888-53028907 Msa0362160:CDS 35.0%
AGGATTCAAACCACTATTTG+TGG - chr3_1:53028908-53028927 Msa0362160:CDS 35.0%
GGATTCAAACCACTATTTGT+GGG - chr3_1:53028909-53028928 Msa0362160:CDS 35.0%
TGTTTAAACTCGAGTGAAGA+AGG - chr3_1:53029433-53029452 Msa0362160:CDS 35.0%
TTGTGGTATATGTATAGCGA+CGG + chr3_1:53029808-53029827 None:intergenic 35.0%
!! GGTTGTTGTTGAAGTGTTTT+TGG + chr3_1:53029864-53029883 None:intergenic 35.0%
! AGAGATTTTGTAAGGGACAA+AGG + chr3_1:53029888-53029907 None:intergenic 35.0%
! AGGAGGAAGAGATTTTGTAA+GGG + chr3_1:53029895-53029914 None:intergenic 35.0%
! TAGGAGGAAGAGATTTTGTA+AGG + chr3_1:53029896-53029915 None:intergenic 35.0%
!!! GGTTATGGTTGTTTTGTTTG+AGG + chr3_1:53029935-53029954 None:intergenic 35.0%
!!! GTTTTCAATTTGTTGGGGTT+TGG - chr3_1:53030342-53030361 Msa0362160:CDS 35.0%
TGAAATTGAAATCCCTTTGG+TGG - chr3_1:53030412-53030431 Msa0362160:intron 35.0%
ACTTTCAAAACACCACCAAA+GGG + chr3_1:53030427-53030446 None:intergenic 35.0%
AACTTTCAAAACACCACCAA+AGG + chr3_1:53030428-53030447 None:intergenic 35.0%
GAGTTAAAGCTATGCATGTT+TGG - chr3_1:53030468-53030487 Msa0362160:intron 35.0%
AAAAGCTACTTCACCTTAGA+GGG - chr3_1:53030497-53030516 Msa0362160:intron 35.0%
! AAATTGTAACTTTGGAGGGT+TGG - chr3_1:53030559-53030578 Msa0362160:CDS 35.0%
!! AGGGTTGGTGTATTCTTAAT+TGG - chr3_1:53030574-53030593 Msa0362160:CDS 35.0%
AATACGAGCTATTCTGCATA+AGG + chr3_1:53030936-53030955 None:intergenic 35.0%
! GCAGAATAGCTCGTATTTTT+CGG - chr3_1:53030939-53030958 Msa0362160:intron 35.0%
CACTTGAATTCAACTTTCCT+TGG + chr3_1:53030978-53030997 None:intergenic 35.0%
TCAATATACTTGAGCACTAC+TGG + chr3_1:53031059-53031078 None:intergenic 35.0%
GATGAGAAGGATAGAATGTT+TGG + chr3_1:53031234-53031253 None:intergenic 35.0%
!! TGTTCTAGAGTTTGATGAGA+AGG + chr3_1:53031247-53031266 None:intergenic 35.0%
AGCAGATTCTTCTTGAACTT+TGG + chr3_1:53031530-53031549 None:intergenic 35.0%
ATCTGCTTCGTTCTTATTAG+AGG - chr3_1:53031543-53031562 Msa0362160:intron 35.0%
AGAGAAGTGGAAGAAAAACA+TGG - chr3_1:53031567-53031586 Msa0362160:intron 35.0%
TTATACTTGTGCAAAAGCAG+TGG - chr3_1:53031624-53031643 Msa0362160:intron 35.0%
TATCGAGACAATTGAATGGA+TGG - chr3_1:53031657-53031676 Msa0362160:intron 35.0%
CGATTTGTAGATTGTACTTC+CGG + chr3_1:53031779-53031798 None:intergenic 35.0%
TTCGGATATATGTCTGCAAA+TGG - chr3_1:53031877-53031896 Msa0362160:intron 35.0%
CCTGTTATTCTAATCTTTGG+AGG + chr3_1:53032018-53032037 None:intergenic 35.0%
CCTCCAAAGATTAGAATAAC+AGG - chr3_1:53032015-53032034 Msa0362160:intron 35.0%
TGGTACATGATGTAGCATAA+TGG + chr3_1:53032226-53032245 None:intergenic 35.0%
CAATTGATGTTGTTCTTCCA+AGG - chr3_1:53032412-53032431 Msa0362160:intron 35.0%
!! TGGTTCTGATCCATATCATC+CGG + chr3_1:53028871-53028890 None:intergenic 40.0%
ATGATATGGATCAGAACCAG+AGG - chr3_1:53028872-53028891 Msa0362160:CDS 40.0%
ATGGATCATCCCACAAATAG+TGG + chr3_1:53028921-53028940 None:intergenic 40.0%
TTGATCAGACGTTGTGTTGT+AGG - chr3_1:53028967-53028986 Msa0362160:CDS 40.0%
CGGAAGCTAATAGTATCATG+TGG - chr3_1:53028992-53029011 Msa0362160:CDS 40.0%
GAATAGGAGACTTTCCTTGT+TGG - chr3_1:53029779-53029798 Msa0362160:CDS 40.0%
CATATACCACAAACGCACTT+CGG - chr3_1:53029816-53029835 Msa0362160:CDS 40.0%
! GATTTTGTAAGGGACAAAGG+TGG + chr3_1:53029885-53029904 None:intergenic 40.0%
!! TATTTTTCTGGTCATGGTGG+TGG - chr3_1:53030122-53030141 Msa0362160:CDS 40.0%
GAAAAGCTACTTCACCTTAG+AGG - chr3_1:53030496-53030515 Msa0362160:intron 40.0%
ACTTTACATGACACCCTCTA+AGG + chr3_1:53030513-53030532 None:intergenic 40.0%
! TGTCAAGAAGCATACTCTTC+TGG - chr3_1:53030797-53030816 Msa0362160:intron 40.0%
GACGATGATTTCCGATCAAT+TGG - chr3_1:53031000-53031019 Msa0362160:intron 40.0%
! AAATTTCTTACGGCTCTGAC+AGG - chr3_1:53031119-53031138 Msa0362160:intron 40.0%
! TGCTTGTTGAAGCAGATTCA+AGG + chr3_1:53031279-53031298 None:intergenic 40.0%
!! GTAGAGGGAGAATTTTGGTA+AGG + chr3_1:53031313-53031332 None:intergenic 40.0%
CAAAATTCTCCCTCTACTCA+CGG - chr3_1:53031316-53031335 Msa0362160:intron 40.0%
TTCTCACCTAACAATAGTCC+AGG - chr3_1:53031340-53031359 Msa0362160:intron 40.0%
GTAGAACCTGGACTATTGTT+AGG + chr3_1:53031349-53031368 None:intergenic 40.0%
ATAGTCCAGGTTCTACGTTA+AGG - chr3_1:53031353-53031372 Msa0362160:intron 40.0%
ATTTGTCAATGGTTCACCTG+AGG - chr3_1:53031393-53031412 Msa0362160:intron 40.0%
ATCATGACCATGATGACCTA+AGG - chr3_1:53031437-53031456 Msa0362160:intron 40.0%
TCTTATGCCTTAGGTCATCA+TGG + chr3_1:53031447-53031466 None:intergenic 40.0%
ATCTCTAGCATCTCTACGTT+AGG + chr3_1:53031499-53031518 None:intergenic 40.0%
TCTTATTAGAGGCAGAGAAG+TGG - chr3_1:53031554-53031573 Msa0362160:intron 40.0%
GTGGAAGAAAAACATGGAGA+TGG - chr3_1:53031573-53031592 Msa0362160:intron 40.0%
AACATGGAGATGGTATCTAG+AGG - chr3_1:53031583-53031602 Msa0362160:intron 40.0%
ACATGGAGATGGTATCTAGA+GGG - chr3_1:53031584-53031603 Msa0362160:intron 40.0%
CGCAAAATAGTATCCGTTTC+AGG - chr3_1:53031691-53031710 Msa0362160:intron 40.0%
TTCGATTGGACTACCTGAAA+CGG + chr3_1:53031707-53031726 None:intergenic 40.0%
GAAAGCAGTTCATTACCAGT+AGG + chr3_1:53031817-53031836 None:intergenic 40.0%
AAATTGGACAAGGAACTCAG+TGG - chr3_1:53031953-53031972 Msa0362160:intron 40.0%
AATTGGACAAGGAACTCAGT+GGG - chr3_1:53031954-53031973 Msa0362160:intron 40.0%
CTAACAGCATGGAACTCAAA+TGG + chr3_1:53032132-53032151 None:intergenic 40.0%
AAGGATACACTCTAACAGCA+TGG + chr3_1:53032143-53032162 None:intergenic 40.0%
TGTTAGAGTGTATCCTTCTG+AGG - chr3_1:53032146-53032165 Msa0362160:intron 40.0%
TGAATGGTCACACTTTCATC+TGG + chr3_1:53032246-53032265 None:intergenic 40.0%
CCTGTCACGATGATTATGAA+TGG + chr3_1:53032262-53032281 None:intergenic 40.0%
CCATTCATAATCATCGTGAC+AGG - chr3_1:53032259-53032278 Msa0362160:intron 40.0%
TAATGTCGAACAGCACTGTT+TGG - chr3_1:53032452-53032471 Msa0362160:intron 40.0%
! TGAACTTAGTAGCTTGCGAA+GGG - chr3_1:53032487-53032506 Msa0362160:intron 40.0%
ATGAAGGAGCTCAATGGATA+AGG + chr3_1:53032582-53032601 None:intergenic 40.0%
GAATTGATGAAGGAGCTCAA+TGG + chr3_1:53032588-53032607 None:intergenic 40.0%
CAGACGTTGTGTTGTAGGTA+CGG - chr3_1:53028972-53028991 Msa0362160:CDS 45.0%
ACTTCGGAGACACTTCAAAG+TGG - chr3_1:53029832-53029851 Msa0362160:CDS 45.0%
TACGACTCGAGATTCTGTAC+AGG + chr3_1:53031157-53031176 None:intergenic 45.0%
TGTTTGGCAGCTGTTATCAG+AGG + chr3_1:53031218-53031237 None:intergenic 45.0%
! CGTGAGTAGAGGGAGAATTT+TGG + chr3_1:53031318-53031337 None:intergenic 45.0%
GCTCACTCATCTTATGCCTT+AGG + chr3_1:53031456-53031475 None:intergenic 45.0%
AAGGCATAAGATGAGTGAGC+TGG - chr3_1:53031456-53031475 Msa0362160:intron 45.0%
GAGCTGGAATCTGTTATGCT+CGG - chr3_1:53031472-53031491 Msa0362160:intron 45.0%
CATGGAGATGGTATCTAGAG+GGG - chr3_1:53031585-53031604 Msa0362160:intron 45.0%
AGGTAGTCCAATCGAACGAT+TGG - chr3_1:53031711-53031730 Msa0362160:intron 45.0%
GGTAGTCCAATCGAACGATT+GGG - chr3_1:53031712-53031731 Msa0362160:intron 45.0%
GTTTCGAAGATTGCCTCTTC+CGG - chr3_1:53031757-53031776 Msa0362160:intron 45.0%
GTAGATTGTACTTCCGGAAG+AGG + chr3_1:53031773-53031792 None:intergenic 45.0%
TTAAAATGCAGCGAGCCTAC+TGG - chr3_1:53031799-53031818 Msa0362160:intron 45.0%
! TAATCTTTGGAGGTCCTCCA+GGG + chr3_1:53032008-53032027 None:intergenic 45.0%
TCTTATTCATCGTATGCCCG+CGG - chr3_1:53032048-53032067 Msa0362160:intron 45.0%
ACTTCGTCCTAATGAAGCTG+TGG - chr3_1:53032188-53032207 Msa0362160:intron 45.0%
TAAGCACATGTCTCCTAAGG+TGG - chr3_1:53032296-53032315 Msa0362160:intron 45.0%
TCAACTAGAGTCACCACCTT+AGG + chr3_1:53032312-53032331 None:intergenic 45.0%
TTCCAAGGGATCACAAAGAG+AGG - chr3_1:53032427-53032446 Msa0362160:intron 45.0%
ATCCTCTCTTTGTGATCCCT+TGG + chr3_1:53032432-53032451 None:intergenic 45.0%
! GTGAACTTAGTAGCTTGCGA+AGG - chr3_1:53032486-53032505 Msa0362160:intron 45.0%
! GAACTTAGTAGCTTGCGAAG+GGG - chr3_1:53032488-53032507 Msa0362160:intron 45.0%
!! CTTCTAGGGTGTAATGTCCA+CGG + chr3_1:53032638-53032657 None:intergenic 45.0%
TACACCCTAGAAGAGAGAGA+TGG - chr3_1:53032645-53032664 Msa0362160:CDS 45.0%
TGCACCATCTCTCTCTTCTA+GGG + chr3_1:53032652-53032671 None:intergenic 45.0%
! AGAGATGGTGCACTGTTTCT+TGG - chr3_1:53032660-53032679 Msa0362160:CDS 45.0%
! ATGGTGCACTGTTTCTTGGT+TGG - chr3_1:53032664-53032683 Msa0362160:CDS 45.0%
!!! TATATTTTTTTATCATTATT+TGG - chr3_1:53029137-53029156 Msa0362160:CDS 5.0%
!!! TATATTTTCTTAAAAAATAT+AGG - chr3_1:53029718-53029737 Msa0362160:CDS 5.0%
!!! ATATTTTCTTAAAAAATATA+GGG - chr3_1:53029719-53029738 Msa0362160:CDS 5.0%
GGTGAGAAACCGTGAGTAGA+GGG + chr3_1:53031328-53031347 None:intergenic 50.0%
AGGTGAGAAACCGTGAGTAG+AGG + chr3_1:53031329-53031348 None:intergenic 50.0%
TGTCAATGGTTCACCTGAGG+CGG - chr3_1:53031396-53031415 Msa0362160:intron 50.0%
AAGTAAGAATCCTCCGCCTC+AGG + chr3_1:53031412-53031431 None:intergenic 50.0%
TACGCTCCCAATCGTTCGAT+TGG + chr3_1:53031721-53031740 None:intergenic 50.0%
! ACGATTGGGAGCGTACATGT+TGG - chr3_1:53031726-53031745 Msa0362160:intron 50.0%
! ATTGGGAGCGTACATGTTGG+AGG - chr3_1:53031729-53031748 Msa0362160:intron 50.0%
! CTAATCTTTGGAGGTCCTCC+AGG + chr3_1:53032009-53032028 None:intergenic 50.0%
!! GTGGGGGCGTTGATATAGTA+GGG - chr3_1:53032070-53032089 Msa0362160:intron 50.0%
!! TGGGGGCGTTGATATAGTAG+GGG - chr3_1:53032071-53032090 Msa0362160:intron 50.0%
TCGTCCTAATGAAGCTGTGG+CGG - chr3_1:53032191-53032210 Msa0362160:intron 50.0%
TTCACCGCCACAGCTTCATT+AGG + chr3_1:53032198-53032217 None:intergenic 50.0%
GGCTAAGCACATGTCTCCTA+AGG - chr3_1:53032293-53032312 Msa0362160:intron 50.0%
! CTGCAAGAACGGAGCGTTAT+TGG + chr3_1:53032349-53032368 None:intergenic 50.0%
TCGACGAAACGCTGCAAGAA+CGG + chr3_1:53032360-53032379 None:intergenic 50.0%
TTGCGAAGGGGAAGAAAGAG+TGG - chr3_1:53032500-53032519 Msa0362160:intron 50.0%
GTCACGAGCTTCTGAGTAAG+TGG - chr3_1:53032526-53032545 Msa0362160:intron 50.0%
!! GTGGAAAAAGCGTTTCGCGA+TGG - chr3_1:53032545-53032564 Msa0362160:intron 50.0%
!! AAAAAGCGTTTCGCGATGGC+TGG - chr3_1:53032549-53032568 Msa0362160:intron 50.0%
AATCTTCTCGAGAGCTACCG+TGG - chr3_1:53032618-53032637 Msa0362160:CDS 50.0%
GTGCACCATCTCTCTCTTCT+AGG + chr3_1:53032653-53032672 None:intergenic 50.0%
TATAGCGACGGACGCCAACA+AGG + chr3_1:53029796-53029815 None:intergenic 55.0%
GTGTCTCCGAAGTGCGTTTG+TGG + chr3_1:53029825-53029844 None:intergenic 55.0%
TCGGTACGCTGCTATTGCCA+AGG - chr3_1:53030958-53030977 Msa0362160:intron 55.0%
TGCGGCCTTAACGTAGAACC+TGG + chr3_1:53031361-53031380 None:intergenic 55.0%
GTCTGCAAATGGAGCCATCG+CGG - chr3_1:53031888-53031907 Msa0362160:intron 55.0%
AGCCATCGCGGAAGCTATGA+AGG - chr3_1:53031900-53031919 Msa0362160:intron 55.0%
CTCCTTCATAGCTTCCGCGA+TGG + chr3_1:53031905-53031924 None:intergenic 55.0%
CATCGCGGAAGCTATGAAGG+AGG - chr3_1:53031903-53031922 Msa0362160:intron 55.0%
TCAGTGGGTGAGCCTAATCC+AGG - chr3_1:53031969-53031988 Msa0362160:intron 55.0%
TATTCATCGTATGCCCGCGG+TGG - chr3_1:53032051-53032070 Msa0362160:intron 55.0%
ATTCATCGTATGCCCGCGGT+GGG - chr3_1:53032052-53032071 Msa0362160:intron 55.0%
!! GGTGGGGGCGTTGATATAGT+AGG - chr3_1:53032069-53032088 Msa0362160:intron 55.0%
ATGACATGACTGCGCAAGCG+CGG + chr3_1:53032106-53032125 None:intergenic 55.0%
TCTTCGAGTCGCACCTCAGA+AGG + chr3_1:53032162-53032181 None:intergenic 55.0%
TCGTGACAGGTTGCTGCGAT+TGG - chr3_1:53032272-53032291 Msa0362160:intron 55.0%
CAATGGTTCACCTGAGGCGG+AGG - chr3_1:53031399-53031418 Msa0362160:intron 60.0%
GGCGAGCAAGAGCCTGGATT+AGG + chr3_1:53031984-53032003 None:intergenic 60.0%
! TCTTTGGAGGTCCTCCAGGG+CGG + chr3_1:53032005-53032024 None:intergenic 60.0%
TTCATCGTATGCCCGCGGTG+GGG - chr3_1:53032053-53032072 Msa0362160:intron 60.0%
TATATCAACGCCCCCACCGC+GGG + chr3_1:53032067-53032086 None:intergenic 60.0%
CTATATCAACGCCCCCACCG+CGG + chr3_1:53032068-53032087 None:intergenic 60.0%
TCATCGTATGCCCGCGGTGG+GGG - chr3_1:53032054-53032073 Msa0362160:intron 65.0%
CAGGGCGGCGAGCAAGAGCC+TGG + chr3_1:53031990-53032009 None:intergenic 75.0%
CAGGCTCTTGCTCGCCGCCC+TGG - chr3_1:53031988-53032007 Msa0362160:intron 75.0%
GCTCTTGCTCGCCGCCCTGG+AGG - chr3_1:53031991-53032010 Msa0362160:intron 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 53028838 53032725 53028838 ID=Msa0362160;Name=Msa0362160
chr3_1 mRNA 53028838 53032725 53028838 ID=Msa0362160-mRNA-1;Parent=Msa0362160;Name=Msa0362160-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|0.66|1|1|3|0|604
chr3_1 exon 53032612 53032725 53032612 ID=Msa0362160-mRNA-1:exon:9619;Parent=Msa0362160-mRNA-1
chr3_1 exon 53030505 53030620 53030505 ID=Msa0362160-mRNA-1:exon:9618;Parent=Msa0362160-mRNA-1
chr3_1 exon 53028838 53030422 53028838 ID=Msa0362160-mRNA-1:exon:9617;Parent=Msa0362160-mRNA-1
chr3_1 CDS 53032612 53032725 53032612 ID=Msa0362160-mRNA-1:cds;Parent=Msa0362160-mRNA-1
chr3_1 CDS 53030505 53030620 53030505 ID=Msa0362160-mRNA-1:cds;Parent=Msa0362160-mRNA-1
chr3_1 CDS 53028838 53030422 53028838 ID=Msa0362160-mRNA-1:cds;Parent=Msa0362160-mRNA-1
Gene Sequence

>Msa0362160

ATGGCAAATTTTAAGGCTGGTAACATAATTCCGGATGATATGGATCAGAACCAGAGGAAAAAGTTTTTCAAGGATTCAAACCACTATTTGTGGGATGATCCATATTTGTTTAAGAATAGCTCGTATTTTTCGGTACGCTGCTATTGCCAAGGAAAGTTGAATTCAAGTGTAGACGATGATTTCCGATCAATTGGAAAATTTCTAGGGTGTTTGTGCAAGAAAGTCAACCAGTTCTACGTTGAGCCTGTACAGAATCTCGAGTCGTATTGCTTACCCTCAATTGAGAATCTAGACAATTATTCTTCCTCTGATAACAGCTGCCAAACATTCTATCCTTCTCATCAAACTCTAGAACAATACAACAACCTTGAATCTGCTTCAACAAGCAACAACAGTTTACCTTACCAAAATTCTCCCTCTACTCACGGTTTCTCACCTAACAATAGTCCAGGTTCTACGTTAAGGCCGCAACATTCACTTGAATTTGTCAATGGTTCACCTGAGGCGGAGGATTCTTACTTGACATATCATGACCATGATGACCTAAGGCATAAGATGAGTGAGCTGGAATCTGTTATGCTCGGACCTAACGTAGAGATGCTAGAGATGTATGATACCAAAGTTCAAGAAGAATCTGCTTCGTTCTTATTAGAGGCAGAGAAGTGGAAGAAAAACATGGAGATGGTATCTAGAGGGGATTTGAAAGAGATGCTTTATACTTGTGCAAAAGCAGTGGATGTGAATGATATCGAGACAATTGAATGGATGGTAACTGAGTTACGCAAAATAGTATCCGTTTCAGGTAGTCCAATCGAACGATTGGGAGCGTACATGTTGGAGGCACTTGTTTCGAAGATTGCCTCTTCCGGAAGTACAATCTACAAATCGTTAAAATGCAGCGAGCCTACTGGTAATGAACTGCTTTCCTACATGCATGTACTTTATGAAATATGTCCGTACTTTAAATTCGGATATATGTCTGCAAATGGAGCCATCGCGGAAGCTATGAAGGAGGAAAATGAAGTCCACATAATTGATTTTCAAATTGGACAAGGAACTCAGTGGGTGAGCCTAATCCAGGCTCTTGCTCGCCGCCCTGGAGGACCTCCAAAGATTAGAATAACAGGTATTGATGACTCTTATTCATCGTATGCCCGCGGTGGGGGCGTTGATATAGTAGGGGAGAAGTTATCCGCGCTTGCGCAGTCATGTCATGTACCATTTGAGTTCCATGCTGTTAGAGTGTATCCTTCTGAGGTGCGACTCGAAGACTTTGAACTTCGTCCTAATGAAGCTGTGGCGGTGAACTTTGCCATTATGCTACATCATGTACCAGATGAAAGTGTGACCATTCATAATCATCGTGACAGGTTGCTGCGATTGGCTAAGCACATGTCTCCTAAGGTGGTGACTCTAGTTGAGCAAGAATTCAACACCAATAACGCTCCGTTCTTGCAGCGTTTCGTCGAGACAATGAACTACTACTCAGCCGTTTATGAATCAATTGATGTTGTTCTTCCAAGGGATCACAAAGAGAGGATTAATGTCGAACAGCACTGTTTGGCTCGTGAAGTTGTGAACTTAGTAGCTTGCGAAGGGGAAGAAAGAGTGGAACGTCACGAGCTTCTGAGTAAGTGGAAAAAGCGTTTCGCGATGGCTGGATTTACACCTTATCCATTGAGCTCCTTCATCAATTCTTCAATCAAGAATCTTCTCGAGAGCTACCGTGGACATTACACCCTAGAAGAGAGAGATGGTGCACTGTTTCTTGGTTGGATGAATCAAGATCTTATTGTTTCTTGTGCTTGGAGATGA
Protein sequence

>Msa0362160

MANFKAGNIIPDDMDQNQRKKFFKDSNHYLWDDPYLFKNSSYFSVRCYCQGKLNSSVDDDFRSIGKFLGCLCKKVNQFYVEPVQNLESYCLPSIENLDNYSSSDNSCQTFYPSHQTLEQYNNLESASTSNNSLPYQNSPSTHGFSPNNSPGSTLRPQHSLEFVNGSPEAEDSYLTYHDHDDLRHKMSELESVMLGPNVEMLEMYDTKVQEESASFLLEAEKWKKNMEMVSRGDLKEMLYTCAKAVDVNDIETIEWMVTELRKIVSVSGSPIERLGAYMLEALVSKIASSGSTIYKSLKCSEPTGNELLSYMHVLYEICPYFKFGYMSANGAIAEAMKEENEVHIIDFQIGQGTQWVSLIQALARRPGGPPKIRITGIDDSYSSYARGGGVDIVGEKLSALAQSCHVPFEFHAVRVYPSEVRLEDFELRPNEAVAVNFAIMLHHVPDESVTIHNHRDRLLRLAKHMSPKVVTLVEQEFNTNNAPFLQRFVETMNYYSAVYESIDVVLPRDHKERINVEQHCLAREVVNLVACEGEERVERHELLSKWKKRFAMAGFTPYPLSSFINSSIKNLLESYRGHYTLEERDGALFLGWMNQDLIVSCAWR*