AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0365840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0365840 MtrunA17_Chr3g0106231 88.828 367 41 0 4 370 109 475 0.0 688
Msa0365840 MtrunA17_Chr3g0106251 95.268 317 11 1 54 370 5 317 0.0 617
Msa0365840 MtrunA17_Chr5g0431441 53.652 356 145 4 5 347 118 466 4.45e-134 391
Msa0365840 MtrunA17_Chr5g0432731 55.369 298 126 3 54 347 3 297 2.61e-113 332
Msa0365840 MtrunA17_Chr5g0431361 49.435 354 159 7 4 346 109 453 1.41e-109 328
Msa0365840 MtrunA17_Chr5g0431371 46.532 346 177 4 4 346 108 448 9.52e-104 313
Msa0365840 MtrunA17_Chr5g0431401 46.243 346 178 4 4 346 108 448 1.12e-103 313
Msa0365840 MtrunA17_Chr5g0431421 45.665 346 180 4 4 346 108 448 3.74e-101 306
Msa0365840 MtrunA17_Chr5g0431431 51.986 277 113 6 29 300 82 343 3.66e-86 265
Msa0365840 MtrunA17_Chr8g0377921 30.159 378 214 10 4 347 103 464 4.35e-48 169
Msa0365840 MtrunA17_Chr6g0464861 33.613 357 216 10 4 348 108 455 4.95e-48 168
Msa0365840 MtrunA17_Chr6g0464871 32.682 358 218 11 4 348 121 468 1.27e-47 167
Msa0365840 MtrunA17_Chr6g0464921 32.394 355 220 10 4 346 109 455 2.16e-47 167
Msa0365840 MtrunA17_Chr7g0250001 32.861 353 222 8 3 346 101 447 4.91e-47 166
Msa0365840 MtrunA17_Chr1g0207981 30.641 359 227 9 8 351 126 477 5.39e-47 166
Msa0365840 MtrunA17_Chr8g0377941 37.066 259 154 4 101 357 221 472 5.88e-47 166
Msa0365840 MtrunA17_Chr6g0464841 32.591 359 219 10 3 348 108 456 6.00e-47 166
Msa0365840 MtrunA17_Chr6g0454151 29.539 369 224 10 4 347 121 478 7.11e-47 166
Msa0365840 MtrunA17_Chr6g0464881 33.523 352 213 10 8 347 113 455 5.66e-46 163
Msa0365840 MtrunA17_Chr5g0401721 30.000 370 215 11 8 349 120 473 1.56e-45 162
Msa0365840 MtrunA17_Chr8g0380531 33.241 361 216 11 4 349 110 460 2.89e-45 161
Msa0365840 MtrunA17_Chr6g0454341 30.214 374 218 11 4 347 118 478 2.69e-44 159
Msa0365840 MtrunA17_Chr3g0078841 29.380 371 225 10 4 347 118 478 1.31e-43 157
Msa0365840 MtrunA17_Chr4g0053501 29.867 375 203 12 9 347 115 465 3.34e-43 156
Msa0365840 MtrunA17_Chr7g0249981 31.467 375 224 12 8 364 125 484 5.32e-43 155
Msa0365840 MtrunA17_Chr6g0454141 28.649 370 228 9 4 347 121 480 9.45e-43 155
Msa0365840 MtrunA17_Chr3g0122001 30.556 360 218 10 16 346 117 473 9.69e-43 159
Msa0365840 MtrunA17_Chr3g0122001 30.278 360 218 10 16 346 597 952 4.32e-41 154
Msa0365840 MtrunA17_Chr8g0336331 29.380 371 225 10 4 347 117 477 2.02e-42 154
Msa0365840 MtrunA17_Chr5g0414331 28.969 359 237 9 4 351 107 458 3.15e-42 153
Msa0365840 MtrunA17_Chr6g0454291 27.297 370 233 9 4 347 118 477 3.21e-42 153
Msa0365840 MtrunA17_Chr5g0414321 30.556 360 226 11 4 349 105 454 4.28e-42 153
Msa0365840 MtrunA17_Chr3g0121991 29.839 372 228 9 4 346 178 545 2.72e-41 152
Msa0365840 MtrunA17_Chr6g0454361 27.371 369 234 9 4 347 122 481 3.60e-41 150
Msa0365840 MtrunA17_Chr4g0053321 27.551 392 231 13 9 367 130 501 4.87e-41 150
Msa0365840 MtrunA17_Chr6g0454201 29.801 302 189 6 60 347 189 481 5.70e-41 150
Msa0365840 MtrunA17_Chr7g0249931 30.000 350 230 9 8 348 142 485 3.05e-40 148
Msa0365840 MtrunA17_Chr6g0454401 27.297 370 233 10 4 347 122 481 6.58e-40 147
Msa0365840 MtrunA17_Chr6g0454331 27.297 370 233 9 4 347 120 479 6.99e-40 147
Msa0365840 MtrunA17_Chr6g0452771 27.346 373 229 9 4 347 121 480 1.69e-39 146
Msa0365840 MtrunA17_Chr1g0207951 32.329 365 214 14 4 350 763 1112 1.96e-39 149
Msa0365840 MtrunA17_Chr1g0207951 31.653 357 227 10 4 350 225 574 4.62e-38 145
Msa0365840 MtrunA17_Chr7g0217881 28.732 355 229 7 4 347 121 462 3.00e-39 145
Msa0365840 MtrunA17_Chr1g0207971 31.742 356 221 11 4 346 107 453 3.97e-39 145
Msa0365840 MtrunA17_Chr6g0454121 27.763 371 230 10 4 347 120 479 5.52e-39 145
Msa0365840 MtrunA17_Chr7g0265101 30.366 382 217 13 4 348 119 488 5.87e-39 145
Msa0365840 MtrunA17_Chr7g0249961 36.402 239 136 7 128 356 38 270 6.04e-39 140
Msa0365840 MtrunA17_Chr6g0454261 26.757 370 235 9 4 347 121 480 1.85e-38 143
Msa0365840 MtrunA17_Chr6g0454191 27.520 367 232 9 6 347 124 481 2.00e-38 143
Msa0365840 MtrunA17_Chr6g0454301 28.378 370 230 9 4 347 371 731 5.46e-38 144
Msa0365840 MtrunA17_Chr6g0454301 29.915 234 145 4 125 347 5 230 7.05e-30 121
Msa0365840 MtrunA17_Chr5g0440421 28.756 386 217 14 4 348 127 495 7.43e-38 142
Msa0365840 MtrunA17_Chr7g0265051 29.459 370 232 10 5 348 120 486 8.91e-38 142
Msa0365840 MtrunA17_Chr8g0359821 26.273 373 233 8 4 347 119 478 9.28e-38 141
Msa0365840 MtrunA17_Chr4g0011051 28.496 379 229 10 4 348 119 489 2.20e-37 140
Msa0365840 MtrunA17_Chr7g0265151 27.493 371 239 9 5 348 118 485 4.80e-37 139
Msa0365840 MtrunA17_Chr6g0454131 27.913 369 232 8 4 347 120 479 5.80e-37 139
Msa0365840 MtrunA17_Chr6g0454181 27.224 371 232 11 4 347 121 480 5.90e-37 139
Msa0365840 MtrunA17_Chr3g0118671 29.223 373 225 11 4 347 112 474 8.78e-37 139
Msa0365840 MtrunA17_Chr7g0243871 30.079 379 229 11 1 354 113 480 1.14e-36 138
Msa0365840 MtrunA17_Chr7g0243771 30.245 367 220 12 1 339 110 468 1.25e-36 138
Msa0365840 MtrunA17_Chr5g0426431 28.000 375 224 10 4 347 119 478 1.52e-36 138
Msa0365840 MtrunA17_Chr6g0454321 28.022 364 223 10 4 339 118 470 1.60e-36 140
Msa0365840 MtrunA17_Chr3g0092641 27.467 375 226 11 4 347 119 478 1.78e-36 138
Msa0365840 MtrunA17_Chr2g0278711 25.798 376 235 9 4 347 114 477 2.00e-36 137
Msa0365840 MtrunA17_Chr3g0118701 27.078 373 235 11 3 347 120 483 2.47e-36 137
Msa0365840 MtrunA17_Chr8g0365811 29.781 366 226 8 4 346 600 957 2.87e-36 140
Msa0365840 MtrunA17_Chr8g0365811 31.068 309 190 8 8 296 122 427 4.19e-30 122
Msa0365840 MtrunA17_Chr7g0243801 30.518 367 219 12 1 339 111 469 3.66e-36 137
Msa0365840 MtrunA17_Chr7g0275681 27.838 370 232 9 5 348 122 482 3.87e-36 137
Msa0365840 MtrunA17_Chr6g0454171 31.650 297 164 8 66 347 38 310 5.21e-36 133
Msa0365840 MtrunA17_Chr3g0118691 28.226 372 230 11 4 347 121 483 5.99e-36 136
Msa0365840 MtrunA17_Chr3g0112771 28.249 354 226 9 9 347 112 452 6.82e-36 136
Msa0365840 MtrunA17_Chr6g0453961 27.224 371 233 10 4 347 130 490 8.30e-36 136
Msa0365840 MtrunA17_Chr8g0335141 31.724 290 163 8 70 336 181 458 1.13e-35 135
Msa0365840 MtrunA17_Chr3g0098111 28.877 374 223 9 4 350 116 473 1.20e-35 135
Msa0365840 MtrunA17_Chr7g0232411 28.297 364 212 12 4 335 108 454 1.47e-35 135
Msa0365840 MtrunA17_Chr5g0426401 29.283 321 198 9 46 347 1 311 1.50e-35 132
Msa0365840 MtrunA17_Chr3g0079731 28.455 369 206 12 9 335 117 469 2.15e-35 135
Msa0365840 MtrunA17_Chr5g0423981 29.167 288 184 5 71 347 167 445 2.22e-35 134
Msa0365840 MtrunA17_Chr4g0044521 29.891 368 221 9 5 344 106 464 2.41e-35 134
Msa0365840 MtrunA17_Chr3g0118771 28.686 373 227 12 4 347 127 489 3.48e-35 134
Msa0365840 MtrunA17_Chr7g0265041 25.815 368 248 5 5 348 124 490 4.04e-35 134
Msa0365840 MtrunA17_Chr3g0118661 29.607 331 189 11 6 304 121 439 4.52e-35 134
Msa0365840 MtrunA17_Chr4g0050341 26.738 374 227 11 4 343 127 487 7.45e-35 134
Msa0365840 MtrunA17_Chr8g0335161 31.724 290 161 9 70 335 179 455 7.76e-35 133
Msa0365840 MtrunA17_Chr1g0207831 29.759 373 208 13 4 346 115 463 1.12e-34 133
Msa0365840 MtrunA17_Chr7g0275511 30.790 367 196 12 6 335 119 464 1.29e-34 132
Msa0365840 MtrunA17_Chr8g0347281 29.014 355 210 9 8 335 122 461 1.95e-34 132
Msa0365840 MtrunA17_Chr6g0454211 26.400 375 230 11 4 347 408 767 1.95e-34 134
Msa0365840 MtrunA17_Chr6g0454211 29.703 202 114 5 60 256 58 236 3.00e-19 89.7
Msa0365840 MtrunA17_Chr1g0207861 31.183 372 209 11 4 346 115 468 1.97e-34 132
Msa0365840 MtrunA17_Chr8g0336691 29.086 361 214 10 4 335 1021 1368 2.06e-34 134
Msa0365840 MtrunA17_Chr8g0336691 28.319 339 217 9 4 335 582 901 2.74e-29 119
Msa0365840 MtrunA17_Chr8g0336691 25.278 360 229 9 4 335 115 462 7.42e-28 115
Msa0365840 MtrunA17_Chr5g0419761 28.158 380 230 9 3 348 117 487 2.21e-34 132
Msa0365840 MtrunA17_Chr6g0453951 25.745 369 240 10 4 347 168 527 2.26e-34 132
Msa0365840 MtrunA17_Chr6g0462551 27.066 351 233 6 8 342 117 460 3.76e-34 131
Msa0365840 MtrunA17_Chr3g0118711 26.810 373 236 10 3 347 118 481 6.55e-34 130
Msa0365840 MtrunA17_Chr6g0454271 27.698 278 181 5 81 347 19 287 9.30e-34 126
Msa0365840 MtrunA17_Chr6g0454221 31.466 232 139 4 125 344 5 228 1.02e-33 127
Msa0365840 MtrunA17_Chr5g0401851 29.867 375 221 12 5 346 118 483 1.75e-33 130
Msa0365840 MtrunA17_Chr8g0347271 29.609 358 204 11 8 335 123 462 2.50e-33 129
Msa0365840 MtrunA17_Chr8g0370941 27.202 386 210 12 4 335 109 477 2.59e-33 129
Msa0365840 MtrunA17_Chr4g0032331 27.794 349 217 9 8 338 112 443 3.27e-33 128
Msa0365840 MtrunA17_Chr7g0243951 28.571 371 216 13 5 339 119 476 4.11e-33 129
Msa0365840 MtrunA17_Chr1g0207931 33.456 272 162 5 95 350 233 501 4.13e-33 129
Msa0365840 MtrunA17_Chr5g0429711 28.846 364 220 11 8 349 118 464 4.16e-33 128
Msa0365840 MtrunA17_Chr7g0232391 31.783 258 142 7 101 335 208 454 4.38e-33 128
Msa0365840 MtrunA17_Chr8g0336651 29.235 366 209 11 4 335 883 1232 4.39e-33 130
Msa0365840 MtrunA17_Chr8g0336651 27.123 365 214 12 4 335 108 453 2.38e-27 114
Msa0365840 MtrunA17_Chr8g0336651 32.394 213 119 6 125 335 574 763 4.88e-26 110
Msa0365840 MtrunA17_Chr6g0454351 25.613 367 226 10 4 347 123 465 6.91e-33 127
Msa0365840 MtrunA17_Chr1g0161351 31.302 361 223 10 4 346 144 497 8.84e-33 128
Msa0365840 MtrunA17_Chr3g0118721 29.699 266 164 6 96 347 34 290 1.01e-32 124
Msa0365840 MtrunA17_Chr4g0014061 33.333 234 132 6 125 336 231 462 1.06e-32 127
Msa0365840 MtrunA17_Chr7g0243631 29.700 367 226 13 1 339 117 479 1.34e-32 127
Msa0365840 MtrunA17_Chr6g0459311 29.210 291 168 8 69 335 184 460 1.38e-32 127
Msa0365840 MtrunA17_Chr7g0243931 28.302 371 218 12 5 339 125 483 1.48e-32 127
Msa0365840 MtrunA17_Chr7g0243711 36.019 211 111 6 150 339 102 309 1.75e-32 124
Msa0365840 MtrunA17_Chr7g0243681 27.957 372 235 11 1 346 115 479 2.47e-32 126
Msa0365840 MtrunA17_Chr1g0159551 33.649 211 121 4 153 346 251 459 2.56e-32 126
Msa0365840 MtrunA17_Chr8g0373301 29.032 372 197 13 4 335 111 455 3.66e-32 125
Msa0365840 MtrunA17_Chr1g0179901 26.371 383 240 11 5 353 126 500 5.50e-32 125
Msa0365840 MtrunA17_Chr1g0153451 26.446 363 226 8 4 339 108 456 6.25e-32 125
Msa0365840 MtrunA17_Chr6g0462571 25.620 363 222 8 8 342 115 457 6.39e-32 125
Msa0365840 MtrunA17_Chr5g0442561 26.042 384 216 10 9 347 113 473 8.24e-32 125
Msa0365840 MtrunA17_Chr7g0232341 28.621 290 173 7 83 349 190 468 1.31e-31 124
Msa0365840 MtrunA17_Chr8g0334861 28.804 368 214 12 8 343 109 460 3.22e-31 123
Msa0365840 MtrunA17_Chr5g0448521 27.154 383 215 14 9 347 106 468 3.29e-31 123
Msa0365840 MtrunA17_Chr8g0339461 28.191 376 202 13 4 335 109 460 4.06e-31 123
Msa0365840 MtrunA17_Chr3g0112761 26.455 378 234 12 4 356 102 460 4.15e-31 122
Msa0365840 MtrunA17_Chr6g0462531 29.086 361 198 10 8 335 118 453 4.19e-31 123
Msa0365840 MtrunA17_Chr3g0106241 67.391 92 19 3 1 92 108 188 4.29e-31 116
Msa0365840 MtrunA17_Chr6g0462541 26.536 358 220 9 8 340 118 457 1.53e-30 121
Msa0365840 MtrunA17_Chr7g0232401 28.836 378 226 12 4 353 111 473 1.54e-30 121
Msa0365840 MtrunA17_Chr5g0442581 25.130 386 236 9 9 355 115 486 1.56e-30 122
Msa0365840 MtrunA17_Chr7g0243851 31.835 267 145 8 102 339 177 435 3.00e-30 120
Msa0365840 MtrunA17_Chr8g0355011 24.185 368 205 9 4 347 45 362 3.23e-30 119
Msa0365840 MtrunA17_Chr5g0419771 27.005 374 236 10 5 347 146 513 3.71e-30 120
Msa0365840 MtrunA17_Chr2g0302961 25.683 366 229 12 8 348 120 467 3.92e-30 120
Msa0365840 MtrunA17_Chr5g0412111 28.169 355 223 10 17 350 122 465 4.00e-30 120
Msa0365840 MtrunA17_Chr6g0486251 29.368 269 154 7 89 335 199 453 4.87e-30 120
Msa0365840 MtrunA17_Chr6g0486201 29.368 269 154 7 89 335 199 453 4.87e-30 120
Msa0365840 MtrunA17_Chr1g0173121 32.692 208 121 4 156 346 257 462 5.01e-30 120
Msa0365840 MtrunA17_Chr7g0218831 27.954 347 204 10 16 343 117 436 5.48e-30 119
Msa0365840 MtrunA17_Chr4g0066261 33.636 220 121 5 151 346 263 481 5.64e-30 120
Msa0365840 MtrunA17_Chr7g0232331 26.330 376 230 12 4 348 108 467 5.78e-30 119
Msa0365840 MtrunA17_Chr7g0218811 27.457 346 207 10 16 343 127 446 6.92e-30 119
Msa0365840 MtrunA17_Chr2g0302991 25.068 367 234 9 8 348 113 464 8.80e-30 119
Msa0365840 MtrunA17_Chr8g0374941 24.259 371 250 9 5 349 1055 1420 1.03e-29 120
Msa0365840 MtrunA17_Chr8g0374941 23.446 354 240 9 5 332 117 465 2.16e-25 108
Msa0365840 MtrunA17_Chr8g0374941 25.072 347 221 8 5 321 582 919 6.21e-23 100
Msa0365840 MtrunA17_Chr8g0355221 27.807 374 229 12 5 346 122 486 1.16e-29 119
Msa0365840 MtrunA17_Chr7g0235051 32.184 261 151 8 102 339 189 446 1.18e-29 119
Msa0365840 MtrunA17_Chr4g0066281 27.198 364 230 8 5 346 116 466 1.22e-29 119
Msa0365840 MtrunA17_Chr4g0066201 29.304 273 170 5 96 346 203 474 1.32e-29 119
Msa0365840 MtrunA17_Chr8g0339601 31.343 268 138 8 98 334 66 318 1.66e-29 116
Msa0365840 MtrunA17_Chr4g0042891 27.100 369 224 12 6 344 110 463 1.76e-29 118
Msa0365840 MtrunA17_Chr6g0449931 26.722 363 220 9 8 339 113 460 2.03e-29 118
Msa0365840 MtrunA17_Chr7g0265141 26.630 368 239 8 5 344 119 483 2.17e-29 118
Msa0365840 MtrunA17_Chr7g0243861 28.496 379 215 13 1 339 118 480 2.28e-29 118
Msa0365840 MtrunA17_Chr7g0243781 30.566 265 152 7 105 346 220 475 2.71e-29 118
Msa0365840 MtrunA17_Chr4g0044501 26.593 361 243 7 5 346 118 475 2.96e-29 118
Msa0365840 MtrunA17_Chr8g0336731 27.397 365 213 10 4 335 134 479 3.84e-29 117
Msa0365840 MtrunA17_Chr8g0361371 29.617 287 162 8 75 335 187 459 4.73e-29 117
Msa0365840 MtrunA17_Chr7g0218821 26.225 347 210 10 16 343 128 447 5.41e-29 117
Msa0365840 MtrunA17_Chr8g0361411 26.685 371 237 10 1 348 97 455 5.60e-29 117
Msa0365840 MtrunA17_Chr5g0428081 26.344 372 240 8 4 346 113 479 7.34e-29 117
Msa0365840 MtrunA17_Chr7g0218841 28.448 348 202 11 16 343 117 437 8.03e-29 116
Msa0365840 MtrunA17_Chr8g0366391 26.415 371 234 9 5 346 117 477 8.09e-29 116
Msa0365840 MtrunA17_Chr4g0066221 26.064 376 238 9 4 348 116 482 9.18e-29 116
Msa0365840 MtrunA17_Chr8g0339451 27.660 376 204 13 4 335 101 452 1.16e-28 116
Msa0365840 MtrunA17_Chr4g0060511 30.888 259 152 7 105 339 225 480 1.94e-28 115
Msa0365840 MtrunA17_Chr5g0442601 25.197 381 223 11 9 347 516 876 2.27e-28 117
Msa0365840 MtrunA17_Chr5g0442601 24.919 309 158 10 9 281 66 336 2.01e-20 93.2
Msa0365840 MtrunA17_Chr8g0336741 28.056 360 215 11 4 334 115 459 2.98e-28 115
Msa0365840 MtrunA17_Chr4g0066171 25.613 367 243 7 4 348 120 478 3.65e-28 115
Msa0365840 MtrunA17_Chr5g0442491 24.745 392 213 12 8 347 114 475 4.35e-28 114
Msa0365840 MtrunA17_Chr5g0429681 28.686 373 206 14 8 347 154 499 4.46e-28 114
Msa0365840 MtrunA17_Chr6g0462521 27.841 352 205 10 8 335 113 439 4.57e-28 114
Msa0365840 MtrunA17_Chr7g0243761 30.094 319 193 12 5 296 119 434 4.79e-28 114
Msa0365840 MtrunA17_Chr4g0042931 30.435 276 151 9 95 344 201 461 5.12e-28 114
Msa0365840 MtrunA17_Chr6g0463861 26.455 378 234 11 1 346 108 473 6.13e-28 114
Msa0365840 MtrunA17_Chr7g0218791 29.769 346 201 14 8 335 115 436 8.07e-28 113
Msa0365840 MtrunA17_Chr5g0403641 29.412 272 151 6 95 335 230 491 8.46e-28 114
Msa0365840 MtrunA17_Chr8g0374901 24.457 368 245 8 5 346 118 478 1.31e-27 113
Msa0365840 MtrunA17_Chr2g0329111 25.065 383 246 11 1 352 113 485 2.29e-27 112
Msa0365840 MtrunA17_Chr6g0463891 28.125 384 230 13 8 358 124 494 3.34e-27 112
Msa0365840 MtrunA17_Chr7g0218311 33.778 225 122 5 148 346 260 483 4.53e-27 112
Msa0365840 MtrunA17_Chr7g0232311 30.980 255 138 8 105 335 212 452 5.55e-27 111
Msa0365840 MtrunA17_Chr6g0454371 33.714 175 99 3 182 347 5 171 5.77e-27 105
Msa0365840 MtrunA17_Chr6g0463851 24.397 373 246 8 4 346 116 482 8.17e-27 111
Msa0365840 MtrunA17_Chr1g0165701 25.916 382 251 10 5 360 122 497 8.34e-27 111
Msa0365840 MtrunA17_Chr8g0334851 27.424 361 212 11 8 335 115 458 1.06e-26 110
Msa0365840 MtrunA17_Chr7g0243911 33.824 204 111 7 148 330 14 214 1.11e-26 105
Msa0365840 MtrunA17_Chr4g0044511 25.886 367 219 9 5 335 144 493 1.21e-26 110
Msa0365840 MtrunA17_Chr5g0442541 24.185 368 225 8 6 335 103 454 2.05e-26 109
Msa0365840 MtrunA17_Chr8g0374971 24.800 375 239 12 4 346 117 480 2.12e-26 110
Msa0365840 MtrunA17_Chr6g0482061 26.298 289 176 7 75 340 199 473 2.36e-26 109
Msa0365840 MtrunA17_Chr4g0066131 24.590 366 240 7 4 343 116 471 2.53e-26 109
Msa0365840 MtrunA17_Chr5g0410941 30.667 225 129 5 148 346 266 489 2.68e-26 109
Msa0365840 MtrunA17_Chr5g0442521 24.397 373 220 11 6 335 111 464 2.99e-26 109
Msa0365840 MtrunA17_Chr8g0350881 30.357 224 130 4 151 349 261 483 3.27e-26 109
Msa0365840 MtrunA17_Chr8g0382021 30.137 219 131 4 148 346 272 488 4.45e-26 108
Msa0365840 MtrunA17_Chr7g0243611 32.642 193 112 4 102 278 80 270 5.34e-26 105
Msa0365840 MtrunA17_Chr1g0153461 30.736 231 119 6 156 361 4 218 8.28e-26 103
Msa0365840 MtrunA17_Chr8g0369341 25.333 375 243 8 1 351 112 473 8.85e-26 108
Msa0365840 MtrunA17_Chr8g0339631 25.888 394 223 15 4 354 109 476 1.41e-25 107
Msa0365840 MtrunA17_Chr5g0393591 25.000 380 194 12 4 351 120 440 1.43e-25 107
Msa0365840 MtrunA17_Chr3g0118751 26.171 363 220 13 4 347 112 445 1.67e-25 107
Msa0365840 MtrunA17_Chr8g0334831 28.525 305 168 9 55 323 164 454 3.58e-25 106
Msa0365840 MtrunA17_Chr2g0294931 28.169 284 174 7 93 349 204 484 3.69e-25 106
Msa0365840 MtrunA17_Chr5g0420801 25.201 373 241 10 4 355 112 467 4.11e-25 105
Msa0365840 MtrunA17_Chr5g0409591 25.000 360 212 10 1 304 89 446 6.13e-25 105
Msa0365840 MtrunA17_Chr7g0243811 32.110 218 124 5 97 300 187 394 6.88e-25 104
Msa0365840 MtrunA17_Chr5g0412101 27.129 317 198 9 54 350 171 474 1.24e-24 104
Msa0365840 MtrunA17_Chr4g0066151 30.093 216 125 5 156 346 265 479 1.42e-24 104
Msa0365840 MtrunA17_Chr5g0442511 25.210 357 206 10 9 335 157 482 3.41e-24 103
Msa0365840 MtrunA17_Chr8g0339441 30.769 208 109 5 156 335 218 418 7.62e-24 102
Msa0365840 MtrunA17_Chr2g0294921 25.269 372 243 9 4 346 265 630 7.77e-24 103
Msa0365840 MtrunA17_Chr7g0241781 27.426 237 154 7 93 324 184 407 8.24e-24 102
Msa0365840 MtrunA17_Chr7g0265111 29.646 226 138 4 144 349 294 518 8.67e-24 102
Msa0365840 MtrunA17_Chr8g0336261 38.346 133 65 3 182 304 5 130 2.92e-23 94.4
Msa0365840 MtrunA17_Chr2g0307961 23.720 371 237 11 4 347 118 469 3.00e-23 100
Msa0365840 MtrunA17_Chr8g0374931 30.233 215 125 4 156 346 268 481 5.22e-23 100
Msa0365840 MtrunA17_Chr4g0044481 34.010 197 111 4 96 278 205 396 6.28e-23 99.4
Msa0365840 MtrunA17_Chr5g0412131 26.000 350 225 10 16 346 135 469 9.80e-23 99.4
Msa0365840 MtrunA17_Chr6g0454251 26.148 283 173 9 4 256 118 394 6.14e-22 96.3
Msa0365840 MtrunA17_Chr2g0294941 26.148 283 183 5 74 331 83 364 8.60e-22 95.5
Msa0365840 MtrunA17_Chr5g0416741 25.000 368 225 12 8 339 124 476 1.35e-21 95.9
Msa0365840 MtrunA17_Chr8g0367221 28.287 251 145 9 89 322 1488 1720 2.10e-21 96.3
Msa0365840 MtrunA17_Chr8g0367221 28.986 207 121 7 95 286 215 410 7.67e-21 94.7
Msa0365840 MtrunA17_Chr8g0367221 26.471 238 137 7 69 286 978 1197 1.04e-19 91.3
Msa0365840 MtrunA17_Chr3g0079711 31.285 179 96 5 181 335 2 177 3.74e-21 90.1
Msa0365840 MtrunA17_Chr4g0072771 22.443 352 240 10 6 344 132 463 9.72e-21 93.2
Msa0365840 MtrunA17_Chr7g0241801 25.957 235 156 7 95 324 186 407 1.49e-20 92.4
Msa0365840 MtrunA17_Chr5g0427571 26.953 256 168 6 79 320 23 273 3.07e-20 90.1
Msa0365840 MtrunA17_Chr6g0454231 27.273 253 147 7 97 348 4 220 3.19e-20 92.0
Msa0365840 MtrunA17_Chr4g0072761 22.443 352 240 11 6 344 119 450 3.36e-20 91.7
Msa0365840 MtrunA17_Chr4g0069611 27.660 235 155 5 98 324 212 439 4.67e-20 91.3
Msa0365840 MtrunA17_Chr2g0278721 32.558 172 104 5 158 321 785 952 7.05e-20 91.7
Msa0365840 MtrunA17_Chr2g0278721 29.258 229 147 5 101 321 220 441 7.11e-20 91.7
Msa0365840 MtrunA17_Chr7g0232351 26.855 283 165 6 4 256 108 378 8.81e-20 89.7
Msa0365840 MtrunA17_Chr2g0278741 28.821 229 148 5 101 321 302 523 1.76e-19 90.1
Msa0365840 MtrunA17_Chr5g0448551 23.641 368 241 12 7 355 109 455 2.34e-19 89.4
Msa0365840 MtrunA17_Chr8g0336251 25.217 345 216 9 3 320 110 439 3.66e-19 88.6
Msa0365840 MtrunA17_Chr8g0336321 25.217 345 216 9 3 320 110 439 4.33e-19 88.6
Msa0365840 MtrunA17_Chr1g0207881 26.050 357 200 8 4 353 92 391 9.40e-19 87.0
Msa0365840 MtrunA17_Chr2g0302851 27.155 232 154 5 101 324 216 440 9.43e-19 87.4
Msa0365840 MtrunA17_Chr3g0092031 30.233 172 108 4 158 321 6 173 2.62e-17 79.7
Msa0365840 MtrunA17_Chr6g0466831 23.636 330 229 10 5 321 120 439 3.24e-17 82.8
Msa0365840 MtrunA17_Chr7g0231631 26.190 252 162 8 102 339 11 252 3.94e-17 80.5
Msa0365840 MtrunA17_Chr8g0337381 35.897 117 67 3 220 335 5 114 1.02e-16 76.3
Msa0365840 MtrunA17_Chr4g0039881 25.197 254 175 5 79 324 170 416 1.21e-16 80.9
Msa0365840 MtrunA17_Chr5g0416821 24.548 387 229 14 8 359 126 484 1.26e-16 81.3
Msa0365840 MtrunA17_Chr6g0466841 23.473 311 215 9 5 301 120 421 3.86e-16 79.7
Msa0365840 MtrunA17_Chr6g0464091 27.004 237 146 7 102 324 226 449 4.35e-16 79.3
Msa0365840 MtrunA17_Chr4g0066141 28.846 156 100 4 199 346 199 351 1.57e-15 77.0
Msa0365840 MtrunA17_Chr2g0319791 25.217 230 142 5 108 322 220 434 3.88e-15 76.6
Msa0365840 MtrunA17_Chr4g0029131 26.033 242 152 5 90 316 200 429 6.16e-15 76.3
Msa0365840 MtrunA17_Chr4g0029151 26.778 239 148 6 93 316 211 437 2.64e-14 73.9
Msa0365840 MtrunA17_Chr8g0357361 25.000 192 135 2 95 278 58 248 5.41e-13 68.6
Msa0365840 MtrunA17_Chr2g0319761 28.889 180 109 5 158 322 259 434 5.72e-13 69.7
Msa0365840 MtrunA17_Chr7g0243731 43.421 76 41 2 214 287 5 80 6.08e-13 63.9
Msa0365840 MtrunA17_Chr1g0196851 24.686 239 153 6 93 316 243 469 1.10e-12 68.9
Msa0365840 MtrunA17_Chr7g0250021 28.218 202 133 6 8 202 114 310 1.18e-12 68.2
Msa0365840 MtrunA17_Chr2g0283041 23.013 239 155 5 88 315 205 425 2.42e-12 67.8
Msa0365840 MtrunA17_Chr2g0319731 26.522 230 145 6 105 322 234 451 3.06e-12 67.8
Msa0365840 MtrunA17_Chr8g0334841 32.867 143 84 5 63 202 1 134 6.88e-12 63.5
Msa0365840 MtrunA17_Chr2g0319751 23.789 227 149 5 108 322 697 911 2.59e-11 65.5
Msa0365840 MtrunA17_Chr6g0454391 33.654 104 50 3 231 322 11 107 6.33e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0365840 AT2G30150.1 45.198 354 177 5 4 348 93 438 2.69e-103 311
Msa0365840 AT2G30150.2 45.198 354 177 5 4 348 109 454 4.50e-103 311
Msa0365840 AT2G30140.2 44.886 352 180 5 4 349 110 453 1.01e-102 311
Msa0365840 AT2G30140.1 44.476 353 181 5 4 349 110 454 3.81e-101 306
Msa0365840 AT2G36970.1 29.921 381 224 11 4 359 122 484 3.56e-49 172
Msa0365840 AT2G28080.1 31.892 370 201 11 8 359 130 466 7.66e-49 172
Msa0365840 AT2G31750.2 32.500 360 218 12 5 349 108 457 3.66e-47 167
Msa0365840 AT2G31750.1 32.402 358 217 12 5 347 108 455 6.08e-47 166
Msa0365840 AT1G05675.1 30.704 355 224 8 4 343 102 449 1.03e-46 165
Msa0365840 AT1G05680.1 30.508 354 226 8 4 343 102 449 1.03e-46 165
Msa0365840 AT1G05560.1 28.267 375 218 9 4 351 106 456 2.18e-45 162
Msa0365840 AT1G05560.2 28.267 375 218 9 4 351 156 506 4.35e-45 162
Msa0365840 AT1G05530.1 28.329 353 215 7 16 346 118 454 4.73e-44 158
Msa0365840 AT1G22400.1 27.968 379 223 11 4 347 119 482 8.49e-44 158
Msa0365840 AT2G23250.1 31.250 352 219 12 8 346 94 435 1.24e-43 157
Msa0365840 AT2G43840.2 29.781 366 211 9 4 346 104 446 1.58e-43 157
Msa0365840 AT2G43840.1 30.055 366 210 10 4 346 104 446 1.04e-42 154
Msa0365840 AT2G23260.1 29.014 355 232 10 6 346 105 453 1.32e-42 154
Msa0365840 AT1G22360.1 26.913 379 226 11 4 347 116 478 1.16e-41 152
Msa0365840 AT4G15550.1 29.443 377 215 9 1 347 119 474 1.53e-40 149
Msa0365840 AT1G22340.1 28.125 384 219 12 4 346 119 486 1.57e-40 149
Msa0365840 AT2G31790.1 29.558 362 222 12 4 343 103 453 2.88e-40 148
Msa0365840 AT2G43820.1 29.972 357 222 11 4 346 104 446 9.95e-40 146
Msa0365840 AT1G78270.1 29.301 372 226 10 4 347 119 481 4.89e-39 145
Msa0365840 AT4G01070.1 33.212 274 147 8 86 335 195 456 6.07e-39 145
Msa0365840 AT4G15490.1 29.223 373 241 10 4 360 114 479 7.80e-39 144
Msa0365840 AT4G15480.1 29.319 382 225 13 4 358 126 489 1.06e-38 144
Msa0365840 AT3G21800.1 26.882 372 234 8 8 348 113 477 1.97e-38 144
Msa0365840 AT3G21560.1 26.509 381 240 10 4 360 121 485 7.97e-38 142
Msa0365840 AT1G22380.1 26.613 372 236 12 4 347 119 481 1.47e-37 141
Msa0365840 AT1G22360.2 25.858 379 218 10 4 347 116 466 8.53e-37 139
Msa0365840 AT3G21790.1 28.723 376 215 10 9 346 118 478 1.07e-36 139
Msa0365840 AT2G36780.1 30.216 278 169 6 95 348 214 490 2.45e-36 138
Msa0365840 AT2G36750.1 32.090 268 161 5 101 348 219 485 3.37e-36 137
Msa0365840 AT5G14860.1 27.688 372 222 13 6 349 126 478 6.57e-36 137
Msa0365840 AT2G16890.2 28.150 373 233 13 6 357 120 478 7.27e-36 136
Msa0365840 AT2G36800.1 31.343 268 163 4 101 348 223 489 7.77e-36 137
Msa0365840 AT3G53150.1 29.847 392 222 12 1 348 129 511 2.54e-35 135
Msa0365840 AT1G10400.1 26.593 361 237 12 6 350 118 466 4.14e-35 134
Msa0365840 AT5G59590.1 29.231 260 158 3 98 346 205 449 6.52e-34 130
Msa0365840 AT3G21780.1 28.075 374 224 9 9 349 110 471 6.96e-34 131
Msa0365840 AT5G03490.1 28.846 364 218 12 1 345 120 461 7.97e-34 130
Msa0365840 AT5G38040.1 28.291 357 221 10 8 346 110 449 1.25e-33 130
Msa0365840 AT3G46680.1 27.066 351 210 9 8 335 111 438 1.27e-33 130
Msa0365840 AT2G36770.1 26.385 379 232 12 5 348 124 490 4.74e-33 129
Msa0365840 AT4G15280.1 26.738 374 228 10 9 349 116 476 9.98e-33 128
Msa0365840 AT4G15500.1 27.371 369 229 10 4 348 111 464 1.38e-32 127
Msa0365840 AT3G53160.1 25.613 367 249 6 5 348 119 484 1.39e-32 127
Msa0365840 AT4G15280.2 26.738 374 228 10 9 349 148 508 1.55e-32 127
Msa0365840 AT1G24100.1 26.273 373 225 10 4 346 106 458 3.01e-32 126
Msa0365840 AT5G59580.1 30.038 263 158 4 95 346 200 447 4.16e-32 125
Msa0365840 AT2G29740.1 26.316 361 230 10 8 346 128 474 8.18e-32 125
Msa0365840 AT3G46670.1 26.124 356 224 7 8 343 109 445 9.97e-32 124
Msa0365840 AT3G21750.1 25.668 374 237 6 8 349 107 471 1.29e-31 124
Msa0365840 AT3G46700.1 27.168 346 217 7 8 335 105 433 2.17e-31 124
Msa0365840 AT2G36790.1 29.851 268 167 4 101 348 223 489 2.39e-31 124
Msa0365840 AT4G14090.1 26.389 360 225 10 4 343 113 452 3.79e-31 123
Msa0365840 AT3G46660.1 33.621 232 128 6 123 343 236 452 3.92e-31 123
Msa0365840 AT2G15480.2 25.341 367 247 8 5 346 126 490 3.95e-31 124
Msa0365840 AT4G36770.1 31.169 231 118 6 123 329 233 446 4.45e-31 123
Msa0365840 AT5G38010.1 26.479 355 230 8 8 346 114 453 5.56e-31 122
Msa0365840 AT4G15260.1 25.668 374 223 9 13 349 2 357 6.46e-31 120
Msa0365840 AT1G07260.1 32.353 238 137 7 124 347 245 472 8.50e-31 122
Msa0365840 AT4G34131.1 26.536 358 241 9 5 345 126 478 1.26e-30 122
Msa0365840 AT3G21760.1 26.289 388 235 12 2 349 107 483 1.28e-30 122
Msa0365840 AT1G07250.1 27.809 356 216 11 20 350 137 476 1.37e-30 122
Msa0365840 AT3G55700.1 27.491 291 183 5 69 347 177 451 1.96e-30 121
Msa0365840 AT1G01420.2 30.515 272 151 8 75 322 188 445 2.42e-30 121
Msa0365840 AT3G46720.1 32.883 222 130 4 118 335 223 429 2.59e-30 120
Msa0365840 AT1G01420.1 30.515 272 151 8 75 322 185 442 2.67e-30 121
Msa0365840 AT2G29730.1 25.485 361 232 9 8 347 119 463 3.91e-30 120
Msa0365840 AT5G26310.1 26.190 378 206 11 5 335 105 456 3.97e-30 120
Msa0365840 AT2G36760.1 27.513 378 229 12 5 348 124 490 4.22e-30 120
Msa0365840 AT4G34138.1 30.303 264 157 5 101 346 224 478 6.41e-30 120
Msa0365840 AT1G22370.2 25.543 368 240 10 4 347 119 476 7.98e-30 120
Msa0365840 AT2G15480.1 25.348 359 247 8 5 346 126 480 8.53e-30 120
Msa0365840 AT3G50740.1 27.978 361 195 13 5 322 110 448 1.55e-29 119
Msa0365840 AT2G15490.3 25.208 361 245 9 5 346 123 477 2.83e-29 118
Msa0365840 AT2G16890.3 27.445 317 198 11 6 302 120 424 3.14e-29 117
Msa0365840 AT2G15490.1 25.000 364 245 9 5 346 123 480 3.31e-29 118
Msa0365840 AT3G46650.1 26.361 349 212 9 8 342 111 428 6.50e-29 116
Msa0365840 AT3G46690.1 26.648 349 215 7 8 335 110 438 1.74e-28 115
Msa0365840 AT5G05900.1 28.956 297 188 9 45 335 157 436 2.63e-28 115
Msa0365840 AT3G16520.3 27.348 362 220 12 8 345 116 458 3.37e-28 115
Msa0365840 AT3G55710.1 28.627 255 153 6 108 347 215 455 4.22e-28 115
Msa0365840 AT1G07240.1 26.330 376 218 12 8 347 124 476 5.65e-28 114
Msa0365840 AT3G11340.1 26.243 362 223 10 8 347 106 445 7.45e-28 114
Msa0365840 AT3G02100.1 27.869 366 204 13 6 343 123 456 1.15e-27 113
Msa0365840 AT2G29710.1 24.931 361 233 9 9 347 119 463 1.46e-27 113
Msa0365840 AT1G22370.1 27.124 306 195 8 60 347 11 306 1.86e-27 110
Msa0365840 AT3G16520.2 28.667 300 182 9 8 285 116 405 3.68e-27 112
Msa0365840 AT3G16520.1 28.667 300 182 9 8 285 116 405 4.35e-27 112
Msa0365840 AT1G73880.1 26.064 376 232 11 1 351 117 471 3.16e-26 109
Msa0365840 AT2G29750.1 25.613 367 228 12 8 348 128 475 3.73e-26 109
Msa0365840 AT5G05870.1 28.912 294 173 8 75 346 175 454 4.32e-26 109
Msa0365840 AT4G34135.1 27.397 292 193 8 5 281 127 414 7.73e-26 108
Msa0365840 AT1G01390.1 32.800 250 132 8 97 322 206 443 1.30e-25 108
Msa0365840 AT2G26480.1 24.234 359 239 8 7 347 103 446 1.56e-25 107
Msa0365840 AT1G01390.2 32.800 250 132 8 97 322 223 460 1.63e-25 107
Msa0365840 AT5G17040.1 26.197 355 230 11 6 348 107 441 1.76e-25 107
Msa0365840 AT5G05880.1 29.960 247 146 7 101 335 206 437 1.90e-25 107
Msa0365840 AT2G18570.1 26.923 286 169 8 76 335 184 455 1.97e-25 107
Msa0365840 AT5G37950.2 27.985 268 174 5 8 264 86 345 6.14e-25 104
Msa0365840 AT5G17050.1 25.210 357 231 10 8 347 120 457 8.22e-25 105
Msa0365840 AT5G66690.1 30.189 265 147 9 97 333 200 454 9.64e-25 105
Msa0365840 AT2G18560.1 28.720 289 160 9 76 335 94 365 1.40e-24 103
Msa0365840 AT1G51210.1 27.052 329 215 12 1 321 121 432 2.89e-24 103
Msa0365840 AT5G05860.1 28.195 266 166 5 93 347 197 448 3.66e-24 103
Msa0365840 AT5G37950.1 27.473 273 175 5 8 264 86 351 4.89e-24 102
Msa0365840 AT5G05890.1 26.822 343 221 9 8 335 114 441 7.24e-24 102
Msa0365840 AT1G30530.1 26.404 356 232 12 6 348 114 452 5.65e-23 100
Msa0365840 AT3G22250.1 29.223 373 209 14 8 345 106 458 8.56e-23 99.8
Msa0365840 AT5G12890.1 26.217 267 167 7 101 347 226 482 2.15e-22 98.6
Msa0365840 AT5G17040.2 27.969 261 162 7 97 348 96 339 2.85e-22 96.7
Msa0365840 AT5G65550.1 28.372 215 131 7 98 301 217 419 4.24e-21 94.7
Msa0365840 AT5G49690.1 30.043 233 146 10 95 322 211 431 1.94e-19 89.7
Msa0365840 AT5G17030.1 25.279 269 163 7 97 350 214 459 3.39e-19 89.0
Msa0365840 AT1G06000.1 25.940 266 167 8 101 346 178 433 3.33e-18 85.9
Msa0365840 AT5G53990.1 24.597 248 158 6 88 324 190 419 4.28e-15 76.6
Msa0365840 AT2G22590.1 28.814 177 110 5 158 322 274 446 4.96e-15 76.6
Msa0365840 AT1G50580.1 22.097 267 178 6 70 322 168 418 6.55e-14 73.2
Msa0365840 AT1G64910.1 21.901 242 164 5 95 324 191 419 1.19e-13 72.4
Msa0365840 AT4G01070.2 33.607 122 71 3 86 205 195 308 1.33e-12 68.6
Msa0365840 AT3G29630.2 24.859 177 121 3 157 322 219 394 1.68e-12 68.9
Msa0365840 AT3G29630.1 24.859 177 121 3 157 322 245 420 1.94e-12 68.6
Msa0365840 AT1G64920.1 21.399 243 164 6 95 322 191 421 3.85e-12 67.8
Msa0365840 AT5G54010.1 21.786 280 179 8 48 316 167 417 3.00e-11 65.1
Msa0365840 AT4G34135.2 26.471 204 140 7 5 202 127 326 7.57e-11 63.2

Find 89 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGTTCATATTATAAATTT+AGG 0.181823 3_1:+60101415 Msa0365840:three_prime_UTR
GTTTGGACCAATTGAGTAAA+TGG 0.196898 3_1:-60100509 None:intergenic
ATCCTTCTATAGGTGGTTAT+TGG 0.200123 3_1:+60100827 Msa0365840:CDS
GAAACATATGTGTGGGAAAA+TGG 0.209304 3_1:+60100762 Msa0365840:CDS
TTTAACATTTCCACTTGTTT+TGG 0.212969 3_1:+60100903 Msa0365840:CDS
ATAGTTGAGGATTGGAAAAT+TGG 0.213823 3_1:+60100949 Msa0365840:CDS
ATTATATTCCATCAAATTCT+TGG 0.221396 3_1:+60100320 Msa0365840:CDS
GCTTGCGTTGTAGGAAAATA+TGG 0.263003 3_1:-60096353 None:intergenic
GATAAAGAAATTCATGGATT+TGG 0.273650 3_1:+60101035 Msa0365840:CDS
AACATACCTTACTTTAATCT+TGG 0.291719 3_1:+60100529 Msa0365840:CDS
TCTCTAAATGCTACTAATAA+TGG 0.298126 3_1:+60100565 Msa0365840:CDS
TTTGCAATCATCAAACTCTA+TGG 0.302150 3_1:+60101351 Msa0365840:three_prime_UTR
TACCTAAATGCTTGCGTTGT+AGG 0.320470 3_1:-60096362 None:intergenic
ATATTCCGGTGGCTGCGTTC+TGG 0.321377 3_1:+60096295 Msa0365840:CDS
TAGTTCATATTATAAATTTA+GGG 0.323588 3_1:+60101416 Msa0365840:three_prime_UTR
TTCCTACAACGCAAGCATTT+AGG 0.330420 3_1:+60096360 Msa0365840:CDS
GGATGATAAGTTTGATACTT+TGG 0.336237 3_1:+60100987 Msa0365840:CDS
AATTGGGTGGAGAGTGAAAA+AGG 0.345078 3_1:+60100966 Msa0365840:CDS
ACAATTCCCATTTACTCAAT+TGG 0.354488 3_1:+60100502 Msa0365840:CDS
TGTGTTGATAAAGAAATTCA+TGG 0.355843 3_1:+60101029 Msa0365840:CDS
ACTATAATCTTACTAATTAG+TGG 0.365916 3_1:-60100931 None:intergenic
TAGCCAATCTATGTAACTTT+GGG 0.380094 3_1:-60100593 None:intergenic
TTCAACCTTTAGATGTTGAT+AGG 0.382743 3_1:+60101392 Msa0365840:three_prime_UTR
TTAGCCAATCTATGTAACTT+TGG 0.384177 3_1:-60100594 None:intergenic
AGATTAAAGTAAGGTATGTT+TGG 0.391403 3_1:-60100526 None:intergenic
AAACATATGTGTGGGAAAAT+GGG 0.397297 3_1:+60100763 Msa0365840:CDS
TAGTTGAGGATTGGAAAATT+GGG 0.428547 3_1:+60100950 Msa0365840:CDS
GGGCAGTTCGTGTTGGAAAC+CGG 0.432940 3_1:+60096268 Msa0365840:CDS
CTGCCCAAAGTTACATAGAT+TGG 0.433234 3_1:+60100590 Msa0365840:CDS
ATGATAAATGTTGGCGGCCA+CGG 0.435721 3_1:-60096225 Msa0365830:intron
GAGACCATTGCAAAATTTGT+TGG 0.438810 3_1:-60100381 None:intergenic
GTAAGATTATAGTTGAGGAT+TGG 0.440487 3_1:+60100941 Msa0365840:CDS
GTATTGTTACATCCTTCTAT+AGG 0.443856 3_1:+60100817 Msa0365840:CDS
AGATGAATCCAAGAATTTGA+TGG 0.446840 3_1:-60100328 None:intergenic
ATCGGTTTCAAGAACACAAA+TGG 0.451220 3_1:+60100666 Msa0365840:CDS
GATGTAACAATACCCTCAAT+TGG 0.455788 3_1:-60100807 None:intergenic
TTTGGACCAATTGAGTAAAT+GGG 0.456999 3_1:-60100508 None:intergenic
TGGAAACCGGAGGAATATTC+CGG 0.460893 3_1:+60096281 Msa0365840:CDS
GTCCAATAACCACCTATAGA+AGG 0.466360 3_1:-60100829 None:intergenic
TCATCAAACTCTATGGTTGT+TGG 0.467261 3_1:+60101358 Msa0365840:three_prime_UTR
TAGCGGTGTTCGGTTCTTGT+GGG 0.478986 3_1:+60100714 Msa0365840:CDS
CATTGCACGATAGCGGTGTT+CGG 0.485783 3_1:+60100704 Msa0365840:CDS
ATAGCGGTGTTCGGTTCTTG+TGG 0.489491 3_1:+60100713 Msa0365840:CDS
GGTCTCTCAAAAGTTGTCAA+TGG 0.491098 3_1:+60100398 Msa0365840:CDS
GCCATATGAAATGTACAAAA+CGG 0.493029 3_1:-60100635 None:intergenic
AAGAGGGTACACCGTTGGAC+CGG 0.495298 3_1:-60101453 None:intergenic
AACTCTATGGTTGTTGGTGT+CGG 0.496128 3_1:+60101364 Msa0365840:three_prime_UTR
TTCATATGGCAGTTATCTAT+CGG 0.502988 3_1:+60100648 Msa0365840:CDS
TTGACACATGAAGCATCAAA+TGG 0.506314 3_1:+60101189 Msa0365840:CDS
CATCGTCCACGTCGAAGCTG+TGG 0.507494 3_1:+60096319 Msa0365840:CDS
GTCTAATAGACCCGGTCCAA+CGG 0.508650 3_1:+60101442 Msa0365840:three_prime_UTR
ACTATCCTATCAACATCTAA+AGG 0.517230 3_1:-60101397 None:intergenic
AATTAGTAAGATTATAGTTG+AGG 0.523664 3_1:+60100936 Msa0365840:CDS
CAGCCACCGGAATATTCCTC+CGG 0.528894 3_1:-60096287 Msa0365830:CDS
TTGAAGAATATAATGGAGAG+TGG 0.537157 3_1:+60101165 Msa0365840:CDS
AAAATAAGAGGGTACACCGT+TGG 0.542121 3_1:-60101458 None:intergenic
TGACATGGTGTGACCAATTG+AGG 0.544676 3_1:+60100794 Msa0365840:CDS
AATGTACAAAACGGAACCAT+GGG 0.545806 3_1:-60100626 None:intergenic
TGTCAACTAGCAATAAAGAA+AGG 0.546800 3_1:+60101111 Msa0365840:CDS
TTGTTACATCCTTCTATAGG+TGG 0.549356 3_1:+60100820 Msa0365840:CDS
GTTATTGGACACATTGTGGT+TGG 0.552161 3_1:+60100842 Msa0365840:CDS
TTGAGGATTGGAAAATTGGG+TGG 0.553176 3_1:+60100953 Msa0365840:CDS
TTTAAGGCATCAATTACTTG+AGG 0.558300 3_1:-60100469 None:intergenic
TTATCGCAGATGATAAATGT+TGG 0.559937 3_1:-60096234 Msa0365830:CDS
GGTTGGAATTCCGTTATTGA+AGG 0.560659 3_1:+60100859 Msa0365840:CDS
TTGTGTCCAAGATTAAAGTA+AGG 0.561566 3_1:-60100535 None:intergenic
GGTTCAAGCTCATAAATTGA+AGG 0.569825 3_1:-60100448 None:intergenic
GATGTCCAGAACGCAGCCAC+CGG 0.571674 3_1:-60096300 Msa0365830:CDS
AAATGGGGTTTGTTGTGACA+TGG 0.574943 3_1:+60100779 Msa0365840:CDS
TGGTTGTTCTTATCAAGAAG+AGG 0.583294 3_1:-60100361 None:intergenic
AAATGTACAAAACGGAACCA+TGG 0.586510 3_1:-60100627 None:intergenic
AACATATGTGTGGGAAAATG+GGG 0.586799 3_1:+60100764 Msa0365840:CDS
AGAGGGTACACCGTTGGACC+GGG 0.588593 3_1:-60101452 None:intergenic
ATAGATTGAAACATATGTGT+GGG 0.591805 3_1:+60100755 Msa0365840:CDS
ATCGTCCACGTCGAAGCTGT+GGG 0.601891 3_1:+60096320 Msa0365840:CDS
ACAAAACGGAACCATGGGGT+TGG 0.607579 3_1:-60100621 None:intergenic
TCGCAGATGATAAATGTTGG+CGG 0.611598 3_1:-60096231 Msa0365830:CDS
AGTGGTTGATCCAAAACAAG+TGG 0.615823 3_1:-60100913 None:intergenic
CAACTAGCAATAAAGAAAGG+TGG 0.616518 3_1:+60101114 Msa0365840:CDS
GACATGGTGTGACCAATTGA+GGG 0.622606 3_1:+60100795 Msa0365840:CDS
CATAGATTGAAACATATGTG+TGG 0.625499 3_1:+60100754 Msa0365840:CDS
GGTGGTTATTGGACACATTG+TGG 0.638646 3_1:+60100838 Msa0365840:CDS
GCATCTGCATTGCACGATAG+CGG 0.641386 3_1:+60100697 Msa0365840:CDS
TGGCTAAATCTCCAACCCCA+TGG 0.645076 3_1:+60100610 Msa0365840:CDS
TAGGGATCGTCTAATAGACC+CGG 0.658349 3_1:+60101434 Msa0365840:three_prime_UTR
CAGTTCGTGTTGGAAACCGG+AGG 0.682058 3_1:+60096271 Msa0365840:CDS
TTGCACCCACAGCTTCGACG+TGG 0.688212 3_1:-60096325 Msa0365830:CDS
AAACCGGAGGAATATTCCGG+TGG 0.703022 3_1:+60096284 Msa0365840:CDS
ATGTACAAAACGGAACCATG+GGG 0.736762 3_1:-60100625 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAATTAATTTATAATT+AGG - chr3_1:60099412-60099431 None:intergenic 0.0%
!! TGTAAGAAAAAAAATATTTA+AGG - chr3_1:60097565-60097584 None:intergenic 10.0%
!! AGTATATACATTTATATTTA+AGG - chr3_1:60098192-60098211 None:intergenic 10.0%
!!! CTTTTTTTATTGATAAAAAA+GGG - chr3_1:60098962-60098981 None:intergenic 10.0%
!!! TCTTTTTTTATTGATAAAAA+AGG - chr3_1:60098963-60098982 None:intergenic 10.0%
!! ATGTTTGTAAAAAAAAAAAA+AGG + chr3_1:60099617-60099636 Msa0365840:intron 10.0%
!! ATAGTTCATATTATAAATTT+AGG + chr3_1:60101415-60101434 Msa0365840:three_prime_UTR 10.0%
!! TAGTTCATATTATAAATTTA+GGG + chr3_1:60101416-60101435 Msa0365840:three_prime_UTR 10.0%
!! TAAAAATGTCAAAACTAATT+TGG - chr3_1:60096623-60096642 None:intergenic 15.0%
!! ACTAATATCAAATATTTATG+AGG + chr3_1:60096802-60096821 Msa0365840:intron 15.0%
!!! TCGATTAATTAATATCATTT+TGG - chr3_1:60096842-60096861 None:intergenic 15.0%
!!! ACTTATCATGTTTAATTTAA+TGG - chr3_1:60097036-60097055 None:intergenic 15.0%
!!! ATATCACTAATTATTTTTGT+TGG - chr3_1:60097426-60097445 None:intergenic 15.0%
!!! AATTTTATCATATTATTCGT+AGG - chr3_1:60097770-60097789 None:intergenic 15.0%
!! ATAAATTCAATCAATGATTT+GGG - chr3_1:60097837-60097856 None:intergenic 15.0%
!! TATAAATTCAATCAATGATT+TGG - chr3_1:60097838-60097857 None:intergenic 15.0%
!!! AAAAAATGTGATTTTAAGTA+AGG + chr3_1:60098300-60098319 Msa0365840:intron 15.0%
!! TTATTATCTCCTTTAATATT+TGG + chr3_1:60099167-60099186 Msa0365840:intron 15.0%
!! TATTATCTCCTTTAATATTT+GGG + chr3_1:60099168-60099187 Msa0365840:intron 15.0%
!! AAGATCTTAACAAAATTTAT+AGG - chr3_1:60099227-60099246 None:intergenic 15.0%
!!! AATTTTGTTAAGATCTTTTA+AGG + chr3_1:60099230-60099249 Msa0365840:intron 15.0%
!!! ATTTTGTTAAGATCTTTTAA+GGG + chr3_1:60099231-60099250 Msa0365840:intron 15.0%
!! TTACAAAAGTAAATAGTAAA+CGG + chr3_1:60099590-60099609 Msa0365840:intron 15.0%
!! TCTGACTTATAAAAATAAAG+AGG + chr3_1:60096658-60096677 Msa0365840:intron 20.0%
!! TATTAATTAATCGAAAACCA+AGG + chr3_1:60096848-60096867 Msa0365840:intron 20.0%
!!! TGTAGTTTTCAAAAACTTTT+GGG - chr3_1:60097477-60097496 None:intergenic 20.0%
!!! TGCTTTTTTTTTTTAAGGAA+GGG - chr3_1:60097525-60097544 None:intergenic 20.0%
!!! CTTAGTGCTTTTTTTTTTTA+AGG - chr3_1:60097530-60097549 None:intergenic 20.0%
!! AATATTTAAGGAAATTTCCA+CGG - chr3_1:60097553-60097572 None:intergenic 20.0%
!! TCAATTTGAATGAATGAATA+TGG - chr3_1:60097597-60097616 None:intergenic 20.0%
!!! AACATGTGTCATATTTTTAT+TGG - chr3_1:60098269-60098288 None:intergenic 20.0%
!!! ATGAGATGTTTGATTTTAAT+TGG + chr3_1:60098440-60098459 Msa0365840:intron 20.0%
!!! ATGTTTGATTTTAATTGGTT+GGG + chr3_1:60098445-60098464 Msa0365840:intron 20.0%
!! GTAATTATTATATCTCTTAC+CGG + chr3_1:60098644-60098663 Msa0365840:intron 20.0%
!!! TTGCAATATCTATTTTGAAA+CGG - chr3_1:60098679-60098698 None:intergenic 20.0%
!!! GATATCTATTTTGAAATAGA+GGG + chr3_1:60098903-60098922 Msa0365840:intron 20.0%
!!! TTTTTTTGTCTGTGTATTTA+TGG + chr3_1:60099081-60099100 Msa0365840:intron 20.0%
!! TGTGTATTTATGGTAAAAAA+GGG + chr3_1:60099091-60099110 Msa0365840:intron 20.0%
!! TCTTAACAAAATTTATAGGA+AGG - chr3_1:60099223-60099242 None:intergenic 20.0%
!! TTGAAAACTAAAGGTTTAAT+TGG - chr3_1:60099327-60099346 None:intergenic 20.0%
!!! CTATTTTAGATCTATATACA+TGG + chr3_1:60099353-60099372 Msa0365840:intron 20.0%
!!! TTTGCATTTTTTAATTTGTG+TGG - chr3_1:60099466-60099485 None:intergenic 20.0%
!! AAAAAAAAACAAGACACTTA+AGG + chr3_1:60099779-60099798 Msa0365840:intron 20.0%
!!! AAATTTTTACCAAAAACACA+TGG + chr3_1:60100089-60100108 Msa0365840:intron 20.0%
!!! AATTTTTACCAAAAACACAT+GGG + chr3_1:60100090-60100109 Msa0365840:intron 20.0%
!! TAATTAGGAATAATATTCCA+AGG - chr3_1:60100129-60100148 None:intergenic 20.0%
!! TTAGAAATGACATTCTAATT+AGG - chr3_1:60100144-60100163 None:intergenic 20.0%
!! ATTATATTCCATCAAATTCT+TGG + chr3_1:60100320-60100339 Msa0365840:CDS 20.0%
!! ACTATAATCTTACTAATTAG+TGG - chr3_1:60100934-60100953 None:intergenic 20.0%
!! AATTAGTAAGATTATAGTTG+AGG + chr3_1:60100936-60100955 Msa0365840:CDS 20.0%
!!! AGCATTTTTGAAGAATATAA+TGG + chr3_1:60101158-60101177 Msa0365840:CDS 20.0%
!!! TTTTGATTGTTTCTTGACAA+AGG - chr3_1:60096417-60096436 None:intergenic 25.0%
!!! TTTGAGTATTAGTTTTTGTC+TGG + chr3_1:60096717-60096736 Msa0365840:intron 25.0%
! AAACTTTGTCTATGTATTTC+TGG - chr3_1:60096893-60096912 None:intergenic 25.0%
!! TAGTTTTCAAAAACTTTTGG+GGG - chr3_1:60097475-60097494 None:intergenic 25.0%
!! GTAGTTTTCAAAAACTTTTG+GGG - chr3_1:60097476-60097495 None:intergenic 25.0%
!! GTGTAGTTTTCAAAAACTTT+TGG - chr3_1:60097478-60097497 None:intergenic 25.0%
!!! GTGCTTTTTTTTTTTAAGGA+AGG - chr3_1:60097526-60097545 None:intergenic 25.0%
! AAACATCACTAAAAACGTAA+AGG + chr3_1:60097691-60097710 Msa0365840:intron 25.0%
! ATTAATGTCGATCTTTCAAT+AGG + chr3_1:60097862-60097881 Msa0365840:intron 25.0%
! TTTCTTTCAGTCTAAATAAG+TGG - chr3_1:60098012-60098031 None:intergenic 25.0%
! AGAGAGAGAAAAAAATATAG+AGG + chr3_1:60098034-60098053 Msa0365840:intron 25.0%
! GAGAGAGAAAAAAATATAGA+GGG + chr3_1:60098035-60098054 Msa0365840:intron 25.0%
! AGAGAGAAAAAAATATAGAG+GGG + chr3_1:60098036-60098055 Msa0365840:intron 25.0%
!!! GTGTCATATTTTTATTGGTT+GGG - chr3_1:60098264-60098283 None:intergenic 25.0%
!!! TGTGTCATATTTTTATTGGT+TGG - chr3_1:60098265-60098284 None:intergenic 25.0%
!!! TGTGATTTTAAGTAAGGAAA+TGG + chr3_1:60098306-60098325 Msa0365840:intron 25.0%
! TAAGGAAATGGAAACATAAA+TGG + chr3_1:60098318-60098337 Msa0365840:intron 25.0%
!!! TTTTTGTTGGTTAAAGAATG+TGG + chr3_1:60098351-60098370 Msa0365840:intron 25.0%
!!! GATGTTTGATTTTAATTGGT+TGG + chr3_1:60098444-60098463 Msa0365840:intron 25.0%
!!! TCTACTTTTAATCAATCAGA+TGG + chr3_1:60098510-60098529 Msa0365840:intron 25.0%
! TATTGTCTCTTCGAAAAAAT+AGG + chr3_1:60098601-60098620 Msa0365840:intron 25.0%
! ATTGTCTCTTCGAAAAAATA+GGG + chr3_1:60098602-60098621 Msa0365840:intron 25.0%
!!! AATATCTATTTTGAAACGGA+TGG - chr3_1:60098675-60098694 None:intergenic 25.0%
!!! CGATATCTATTTTGAAATAG+AGG + chr3_1:60098902-60098921 Msa0365840:intron 25.0%
! CTGTGTATTTATGGTAAAAA+AGG + chr3_1:60099090-60099109 Msa0365840:intron 25.0%
! TAAGTCATCCCAAATATTAA+AGG - chr3_1:60099179-60099198 None:intergenic 25.0%
!!! TAGTCTTGTTTGAAAACTAA+AGG - chr3_1:60099336-60099355 None:intergenic 25.0%
! TCACTATCATATTTAAGTCT+AGG + chr3_1:60099381-60099400 Msa0365840:intron 25.0%
! TATCATATTTAAGTCTAGGA+GGG + chr3_1:60099385-60099404 Msa0365840:intron 25.0%
! CATGTGTAAATAACATTTCT+GGG - chr3_1:60099915-60099934 None:intergenic 25.0%
! ACATGTGTAAATAACATTTC+TGG - chr3_1:60099916-60099935 None:intergenic 25.0%
!!! GTAATTTCTAAAACATTCTC+TGG + chr3_1:60100060-60100079 Msa0365840:intron 25.0%
!!! AAACAAACATACCCTTATTT+TGG + chr3_1:60100184-60100203 Msa0365840:intron 25.0%
!!! AATTGTGAGCTTTGATTTTA+AGG - chr3_1:60100488-60100507 None:intergenic 25.0%
! AGATTAAAGTAAGGTATGTT+TGG - chr3_1:60100529-60100548 None:intergenic 25.0%
! AACATACCTTACTTTAATCT+TGG + chr3_1:60100529-60100548 Msa0365840:CDS 25.0%
! TCTCTAAATGCTACTAATAA+TGG + chr3_1:60100565-60100584 Msa0365840:CDS 25.0%
! ATAGATTGAAACATATGTGT+GGG + chr3_1:60100755-60100774 Msa0365840:CDS 25.0%
! AGAAAAAACACCTTCAATAA+CGG - chr3_1:60100872-60100891 None:intergenic 25.0%
!!! TTATTGAAGGTGTTTTTTCT+GGG + chr3_1:60100872-60100891 Msa0365840:CDS 25.0%
! ACAAGTGGAAATGTTAAAAA+AGG - chr3_1:60100901-60100920 None:intergenic 25.0%
!! TTTAACATTTCCACTTGTTT+TGG + chr3_1:60100903-60100922 Msa0365840:CDS 25.0%
!! TGTGTTGATAAAGAAATTCA+TGG + chr3_1:60101029-60101048 Msa0365840:CDS 25.0%
! GATAAAGAAATTCATGGATT+TGG + chr3_1:60101035-60101054 Msa0365840:CDS 25.0%
!!! ATGGATTTGGATTTTGATTT+AGG + chr3_1:60101048-60101067 Msa0365840:CDS 25.0%
!!! ATTTGGATTTTGATTTAGGA+AGG + chr3_1:60101052-60101071 Msa0365840:CDS 25.0%
!!! TTTGGATTTTGATTTAGGAA+GGG + chr3_1:60101053-60101072 Msa0365840:CDS 25.0%
TTATCGCAGATGATAAATGT+TGG - chr3_1:60096237-60096256 Msa0365830:CDS 30.0%
! TCTGCGATAATTTTCTCTTT+TGG + chr3_1:60096247-60096266 Msa0365840:CDS 30.0%
! CTGCGATAATTTTCTCTTTT+GGG + chr3_1:60096248-60096267 Msa0365840:CDS 30.0%
TAAATTCTCTTGATGTGCTT+GGG - chr3_1:60097012-60097031 None:intergenic 30.0%
! TTTTTCTCCTTCATTCATCA+AGG - chr3_1:60098098-60098117 None:intergenic 30.0%
TTTCTCCCACTAAAAAATCA+AGG + chr3_1:60098139-60098158 Msa0365840:intron 30.0%
TTGGTTAAAGAATGTGGAAA+AGG + chr3_1:60098357-60098376 Msa0365840:intron 30.0%
CAGATGGTGATACAAATAAT+CGG + chr3_1:60098526-60098545 Msa0365840:intron 30.0%
! ATTTTTGTCCCAGATATCAA+CGG + chr3_1:60098568-60098587 Msa0365840:intron 30.0%
TAGTGATCAAAGTTGTGTAT+TGG + chr3_1:60098854-60098873 Msa0365840:intron 30.0%
!! GTTAAGATCTTTTAAGGGTT+TGG + chr3_1:60099236-60099255 Msa0365840:intron 30.0%
AAAAGATAGCAACAAATGAG+GGG - chr3_1:60099275-60099294 None:intergenic 30.0%
CAAAAGATAGCAACAAATGA+GGG - chr3_1:60099276-60099295 None:intergenic 30.0%
GTTGACAAGTACCTAAATTT+GGG - chr3_1:60099305-60099324 None:intergenic 30.0%
CTATCATATTTAAGTCTAGG+AGG + chr3_1:60099384-60099403 Msa0365840:intron 30.0%
AAGGTTTGTAATATGATTCC+TGG + chr3_1:60099814-60099833 Msa0365840:intron 30.0%
AGGTTTGTAATATGATTCCT+GGG + chr3_1:60099815-60099834 Msa0365840:intron 30.0%
! ATTGTTATTCGCATGCTTAA+AGG + chr3_1:60099943-60099962 Msa0365840:intron 30.0%
AAAAAGGAAACAAATGTGAG+TGG - chr3_1:60100025-60100044 None:intergenic 30.0%
! ATAAGGGTATGTTTGTTTCA+AGG - chr3_1:60100182-60100201 None:intergenic 30.0%
! ATTCTTTGTTATGCAGAAGA+TGG + chr3_1:60100283-60100302 Msa0365840:intron 30.0%
AGATGAATCCAAGAATTTGA+TGG - chr3_1:60100331-60100350 None:intergenic 30.0%
! ACAACCAACAAATTTTGCAA+TGG + chr3_1:60100377-60100396 Msa0365840:CDS 30.0%
! TTTAAGGCATCAATTACTTG+AGG - chr3_1:60100472-60100491 None:intergenic 30.0%
ACAATTCCCATTTACTCAAT+TGG + chr3_1:60100502-60100521 Msa0365840:CDS 30.0%
TTTGGACCAATTGAGTAAAT+GGG - chr3_1:60100511-60100530 None:intergenic 30.0%
TTGTGTCCAAGATTAAAGTA+AGG - chr3_1:60100538-60100557 None:intergenic 30.0%
TAGCCAATCTATGTAACTTT+GGG - chr3_1:60100596-60100615 None:intergenic 30.0%
TTAGCCAATCTATGTAACTT+TGG - chr3_1:60100597-60100616 None:intergenic 30.0%
! TCCGTTTTGTACATTTCATA+TGG + chr3_1:60100634-60100653 Msa0365840:CDS 30.0%
GCCATATGAAATGTACAAAA+CGG - chr3_1:60100638-60100657 None:intergenic 30.0%
TTCATATGGCAGTTATCTAT+CGG + chr3_1:60100648-60100667 Msa0365840:CDS 30.0%
CATAGATTGAAACATATGTG+TGG + chr3_1:60100754-60100773 Msa0365840:CDS 30.0%
AAACATATGTGTGGGAAAAT+GGG + chr3_1:60100763-60100782 Msa0365840:CDS 30.0%
GTATTGTTACATCCTTCTAT+AGG + chr3_1:60100817-60100836 Msa0365840:CDS 30.0%
!!! GTTATTGAAGGTGTTTTTTC+TGG + chr3_1:60100871-60100890 Msa0365840:CDS 30.0%
!!! TATTGAAGGTGTTTTTTCTG+GGG + chr3_1:60100873-60100892 Msa0365840:CDS 30.0%
GTAAGATTATAGTTGAGGAT+TGG + chr3_1:60100941-60100960 Msa0365840:CDS 30.0%
ATAGTTGAGGATTGGAAAAT+TGG + chr3_1:60100949-60100968 Msa0365840:CDS 30.0%
TAGTTGAGGATTGGAAAATT+GGG + chr3_1:60100950-60100969 Msa0365840:CDS 30.0%
GGATGATAAGTTTGATACTT+TGG + chr3_1:60100987-60101006 Msa0365840:CDS 30.0%
TGTCAACTAGCAATAAAGAA+AGG + chr3_1:60101111-60101130 Msa0365840:CDS 30.0%
! TTGAAGAATATAATGGAGAG+TGG + chr3_1:60101165-60101184 Msa0365840:CDS 30.0%
! TTTTGTCATGCTTAGTTGTT+TGG + chr3_1:60101269-60101288 Msa0365840:three_prime_UTR 30.0%
TTTGCAATCATCAAACTCTA+TGG + chr3_1:60101351-60101370 Msa0365840:three_prime_UTR 30.0%
TTCAACCTTTAGATGTTGAT+AGG + chr3_1:60101392-60101411 Msa0365840:three_prime_UTR 30.0%
ACTATCCTATCAACATCTAA+AGG - chr3_1:60101400-60101419 None:intergenic 30.0%
CTAAATTCTCTTGATGTGCT+TGG - chr3_1:60097013-60097032 None:intergenic 35.0%
TCAAGCTTTCAATGTTTCAG+TGG - chr3_1:60097091-60097110 None:intergenic 35.0%
ATAAAGGATCGTCAAACGAT+TGG + chr3_1:60097234-60097253 Msa0365840:intron 35.0%
TAAAGGATCGTCAAACGATT+GGG + chr3_1:60097235-60097254 Msa0365840:intron 35.0%
!! AAAAAAAAAGCACTAAGCCG+TGG + chr3_1:60097533-60097552 Msa0365840:intron 35.0%
ACACCCAAGTTTATAGCATA+CGG + chr3_1:60097737-60097756 Msa0365840:intron 35.0%
TTGCCGTATGCTATAAACTT+GGG - chr3_1:60097743-60097762 None:intergenic 35.0%
TTTGCCGTATGCTATAAACT+TGG - chr3_1:60097744-60097763 None:intergenic 35.0%
! TTTGATTTCGCGTCTTATTG+CGG - chr3_1:60097901-60097920 None:intergenic 35.0%
TAATTACAGCGTTGTGTTGT+TGG - chr3_1:60097939-60097958 None:intergenic 35.0%
AGTGAAAACTACGATATAGC+TGG - chr3_1:60098165-60098184 None:intergenic 35.0%
GGGTGTAAGAATAATCTCTT+AGG - chr3_1:60098465-60098484 None:intergenic 35.0%
GGAAATGGAAACATAAATGG+TGG + chr3_1:60098321-60098340 Msa0365840:intron 35.0%
AATGGAAACATAAATGGTGG+TGG + chr3_1:60098324-60098343 Msa0365840:intron 35.0%
ATGGAAACATAAATGGTGGT+GGG + chr3_1:60098325-60098344 Msa0365840:intron 35.0%
! TTTTTGTCCCAGATATCAAC+GGG + chr3_1:60098569-60098588 Msa0365840:intron 35.0%
ACAACACGATGATATATGCA+TGG + chr3_1:60099006-60099025 Msa0365840:intron 35.0%
!! TGAACATGTTTTAGACGTAC+TGG - chr3_1:60099032-60099051 None:intergenic 35.0%
GGGATGACTTACCTAAAATT+AGG + chr3_1:60099188-60099207 Msa0365840:intron 35.0%
TGACTTACCTAAAATTAGGC+AGG + chr3_1:60099192-60099211 Msa0365840:intron 35.0%
GACTTACCTAAAATTAGGCA+GGG + chr3_1:60099193-60099212 Msa0365840:intron 35.0%
!! GATCTTTTAAGGGTTTGGTT+TGG + chr3_1:60099241-60099260 Msa0365840:intron 35.0%
AAAGATAGCAACAAATGAGG+GGG - chr3_1:60099274-60099293 None:intergenic 35.0%
CCAAAAGATAGCAACAAATG+AGG - chr3_1:60099277-60099296 None:intergenic 35.0%
!! CCTCATTTGTTGCTATCTTT+TGG + chr3_1:60099274-60099293 Msa0365840:intron 35.0%
! TTTTGGCACATCCCAAATTT+AGG + chr3_1:60099291-60099310 Msa0365840:intron 35.0%
GGTTGACAAGTACCTAAATT+TGG - chr3_1:60099306-60099325 None:intergenic 35.0%
CTTAAGGTGTGTTTGTTTCA+AGG + chr3_1:60099795-60099814 Msa0365840:intron 35.0%
ATTTACAATCTCACATTCCC+AGG - chr3_1:60099835-60099854 None:intergenic 35.0%
TTATTCGCATGCTTAAAGGA+TGG + chr3_1:60099947-60099966 Msa0365840:intron 35.0%
TATTCGCATGCTTAAAGGAT+GGG + chr3_1:60099948-60099967 Msa0365840:intron 35.0%
! CATTCATACCCATGTGTTTT+TGG - chr3_1:60100101-60100120 None:intergenic 35.0%
TGGGTATGAATGTTATTCCT+TGG + chr3_1:60100109-60100128 Msa0365840:intron 35.0%
!!! TACCCTTATTTTGGCTAGAA+TGG + chr3_1:60100193-60100212 Msa0365840:intron 35.0%
AGCCATTCTAGCCAAAATAA+GGG - chr3_1:60100198-60100217 None:intergenic 35.0%
AAGCCATTCTAGCCAAAATA+AGG - chr3_1:60100199-60100218 None:intergenic 35.0%
TGGTTGTTCTTATCAAGAAG+AGG - chr3_1:60100364-60100383 None:intergenic 35.0%
GAGACCATTGCAAAATTTGT+TGG - chr3_1:60100384-60100403 None:intergenic 35.0%
GGTTCAAGCTCATAAATTGA+AGG - chr3_1:60100451-60100470 None:intergenic 35.0%
GTTTGGACCAATTGAGTAAA+TGG - chr3_1:60100512-60100531 None:intergenic 35.0%
AATGTACAAAACGGAACCAT+GGG - chr3_1:60100629-60100648 None:intergenic 35.0%
AAATGTACAAAACGGAACCA+TGG - chr3_1:60100630-60100649 None:intergenic 35.0%
! ATCGGTTTCAAGAACACAAA+TGG + chr3_1:60100666-60100685 Msa0365840:CDS 35.0%
GAAACATATGTGTGGGAAAA+TGG + chr3_1:60100762-60100781 Msa0365840:CDS 35.0%
AACATATGTGTGGGAAAATG+GGG + chr3_1:60100764-60100783 Msa0365840:CDS 35.0%
GATGTAACAATACCCTCAAT+TGG - chr3_1:60100810-60100829 None:intergenic 35.0%
TTGTTACATCCTTCTATAGG+TGG + chr3_1:60100820-60100839 Msa0365840:CDS 35.0%
ATCCTTCTATAGGTGGTTAT+TGG + chr3_1:60100827-60100846 Msa0365840:CDS 35.0%
GGATTTGAGAAAAAGAGCAA+AGG + chr3_1:60101074-60101093 Msa0365840:CDS 35.0%
CAACTAGCAATAAAGAAAGG+TGG + chr3_1:60101114-60101133 Msa0365840:CDS 35.0%
! TTGACACATGAAGCATCAAA+TGG + chr3_1:60101189-60101208 Msa0365840:CDS 35.0%
TCATCAAACTCTATGGTTGT+TGG + chr3_1:60101358-60101377 Msa0365840:three_prime_UTR 35.0%
TCGCAGATGATAAATGTTGG+CGG - chr3_1:60096234-60096253 Msa0365830:CDS 40.0%
GCTTGCGTTGTAGGAAAATA+TGG - chr3_1:60096356-60096375 None:intergenic 40.0%
TTCCTACAACGCAAGCATTT+AGG + chr3_1:60096360-60096379 Msa0365840:CDS 40.0%
TACCTAAATGCTTGCGTTGT+AGG - chr3_1:60096365-60096384 None:intergenic 40.0%
ACAACGCAAGCATTTAGGTA+TGG + chr3_1:60096365-60096384 Msa0365840:intron 40.0%
!! CTTTTGGGGGAAGATAAGTA+AGG - chr3_1:60097462-60097481 None:intergenic 40.0%
CACTGAAATACACATGCTTC+CGG + chr3_1:60097795-60097814 Msa0365840:intron 40.0%
TCTCCTTCATTCATCAAGGA+GGG - chr3_1:60098094-60098113 None:intergenic 40.0%
TTCTCCTTCATTCATCAAGG+AGG - chr3_1:60098095-60098114 None:intergenic 40.0%
!!! GCTGGCCTTGATTTTTTAGT+GGG - chr3_1:60098147-60098166 None:intergenic 40.0%
!!! AGCTGGCCTTGATTTTTTAG+TGG - chr3_1:60098148-60098167 None:intergenic 40.0%
! TTTTGTCCCAGATATCAACG+GGG + chr3_1:60098570-60098589 Msa0365840:intron 40.0%
! TTTGAAACGGATGGAGTATC+CGG - chr3_1:60098666-60098685 None:intergenic 40.0%
AAGATAGCAACAAATGAGGG+GGG - chr3_1:60099273-60099292 None:intergenic 40.0%
GGTCTCTCAAAAGTTGTCAA+TGG + chr3_1:60100398-60100417 Msa0365840:CDS 40.0%
CTGCCCAAAGTTACATAGAT+TGG + chr3_1:60100590-60100609 Msa0365840:CDS 40.0%
ATGTACAAAACGGAACCATG+GGG - chr3_1:60100628-60100647 None:intergenic 40.0%
!! AAATGGGGTTTGTTGTGACA+TGG + chr3_1:60100779-60100798 Msa0365840:CDS 40.0%
GTCCAATAACCACCTATAGA+AGG - chr3_1:60100832-60100851 None:intergenic 40.0%
GTTATTGGACACATTGTGGT+TGG + chr3_1:60100842-60100861 Msa0365840:CDS 40.0%
GGTTGGAATTCCGTTATTGA+AGG + chr3_1:60100859-60100878 Msa0365840:CDS 40.0%
AGTGGTTGATCCAAAACAAG+TGG - chr3_1:60100916-60100935 None:intergenic 40.0%
TTGAGGATTGGAAAATTGGG+TGG + chr3_1:60100953-60100972 Msa0365840:CDS 40.0%
AATTGGGTGGAGAGTGAAAA+AGG + chr3_1:60100966-60100985 Msa0365840:CDS 40.0%
AACTCTATGGTTGTTGGTGT+CGG + chr3_1:60101364-60101383 Msa0365840:three_prime_UTR 40.0%
ATGATAAATGTTGGCGGCCA+CGG - chr3_1:60096228-60096247 Msa0365830:CDS 45.0%
TGGAAACCGGAGGAATATTC+CGG + chr3_1:60096281-60096300 Msa0365840:CDS 45.0%
!! TTTCTGGCTCACTTCGTGTT+GGG - chr3_1:60096877-60096896 None:intergenic 45.0%
!! ATTTCTGGCTCACTTCGTGT+TGG - chr3_1:60096878-60096897 None:intergenic 45.0%
! GTGTTGTTGGTCGTCTTGTA+CGG - chr3_1:60097926-60097945 None:intergenic 45.0%
! CATCAAGGAGGGGTGATTTT+AGG - chr3_1:60098083-60098102 None:intergenic 45.0%
CTCCTTCATTCATCAAGGAG+GGG - chr3_1:60098093-60098112 None:intergenic 45.0%
!! GAAACATAAATGGTGGTGGG+TGG + chr3_1:60098328-60098347 Msa0365840:intron 45.0%
TTTGTCCCAGATATCAACGG+GGG + chr3_1:60098571-60098590 Msa0365840:intron 45.0%
AATCTCCCCCGTTGATATCT+GGG - chr3_1:60098579-60098598 None:intergenic 45.0%
TAATCTCCCCCGTTGATATC+TGG - chr3_1:60098580-60098599 None:intergenic 45.0%
! GGAAGACCCTGCCTAATTTT+AGG - chr3_1:60099202-60099221 None:intergenic 45.0%
TGACATGGTGTGACCAATTG+AGG + chr3_1:60100794-60100813 Msa0365840:CDS 45.0%
GACATGGTGTGACCAATTGA+GGG + chr3_1:60100795-60100814 Msa0365840:CDS 45.0%
GGTGGTTATTGGACACATTG+TGG + chr3_1:60100838-60100857 Msa0365840:CDS 45.0%
TAGGGATCGTCTAATAGACC+CGG + chr3_1:60101434-60101453 Msa0365840:three_prime_UTR 45.0%
!!! TTTAAAATCTTATAAATATT+TGG - chr3_1:60097215-60097234 None:intergenic 5.0%
!!! ATTTATAAGATTTTAAATAA+AGG + chr3_1:60097218-60097237 Msa0365840:intron 5.0%
!! TATTTATTAGTTAAAAAATA+TGG - chr3_1:60098738-60098757 None:intergenic 5.0%
!! ATTAATGATTTATTAAAAAA+AGG + chr3_1:60099667-60099686 Msa0365840:intron 5.0%
!!! TTTTTCTTTTTTTTTTTTTA+AGG - chr3_1:60099764-60099783 None:intergenic 5.0%
!! CTTAATTAAAAAAATAAAAA+AGG - chr3_1:60100041-60100060 None:intergenic 5.0%
! CTCTTTTGGGCAGTTCGTGT+TGG + chr3_1:60096261-60096280 Msa0365840:CDS 50.0%
AAACCGGAGGAATATTCCGG+TGG + chr3_1:60096284-60096303 Msa0365840:CDS 50.0%
CACCCCTCCTTGATGAATGA+AGG + chr3_1:60098088-60098107 Msa0365840:intron 50.0%
!!! TGGTGGTGGGTGGTTTTTGT+TGG + chr3_1:60098338-60098357 Msa0365840:intron 50.0%
TAGCAACAAATGAGGGGGGA+GGG - chr3_1:60099269-60099288 None:intergenic 50.0%
ATAGCAACAAATGAGGGGGG+AGG - chr3_1:60099270-60099289 None:intergenic 50.0%
TGGCTAAATCTCCAACCCCA+TGG + chr3_1:60100610-60100629 Msa0365840:CDS 50.0%
ACAAAACGGAACCATGGGGT+TGG - chr3_1:60100624-60100643 None:intergenic 50.0%
GCATCTGCATTGCACGATAG+CGG + chr3_1:60100697-60100716 Msa0365840:CDS 50.0%
! CATTGCACGATAGCGGTGTT+CGG + chr3_1:60100704-60100723 Msa0365840:CDS 50.0%
ATAGCGGTGTTCGGTTCTTG+TGG + chr3_1:60100713-60100732 Msa0365840:CDS 50.0%
TAGCGGTGTTCGGTTCTTGT+GGG + chr3_1:60100714-60100733 Msa0365840:CDS 50.0%
GTCTAATAGACCCGGTCCAA+CGG + chr3_1:60101442-60101461 Msa0365840:three_prime_UTR 50.0%
GGGCAGTTCGTGTTGGAAAC+CGG + chr3_1:60096268-60096287 Msa0365840:CDS 55.0%
CAGTTCGTGTTGGAAACCGG+AGG + chr3_1:60096271-60096290 Msa0365840:CDS 55.0%
CAGCCACCGGAATATTCCTC+CGG - chr3_1:60096290-60096309 Msa0365830:CDS 55.0%
ATATTCCGGTGGCTGCGTTC+TGG + chr3_1:60096295-60096314 Msa0365840:CDS 55.0%
ATCGTCCACGTCGAAGCTGT+GGG + chr3_1:60096320-60096339 Msa0365840:CDS 55.0%
CACTTCGTGTTGGGAAGCCT+TGG - chr3_1:60096868-60096887 None:intergenic 55.0%
AGCAACAAATGAGGGGGGAG+GGG - chr3_1:60099268-60099287 None:intergenic 55.0%
GATGTCCAGAACGCAGCCAC+CGG - chr3_1:60096303-60096322 Msa0365830:CDS 60.0%
CATCGTCCACGTCGAAGCTG+TGG + chr3_1:60096319-60096338 Msa0365840:CDS 60.0%
TTGCACCCACAGCTTCGACG+TGG - chr3_1:60096328-60096347 Msa0365830:CDS 60.0%
GGGCGTCAACGTTGCAGATC+CGG - chr3_1:60097817-60097836 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 60096222 60101467 60096222 ID=Msa0365840;Name=Msa0365840
chr3_1 mRNA 60096222 60101467 60096222 ID=Msa0365840-mRNA-1;Parent=Msa0365840;Name=Msa0365840-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.5|1|1|1|2|216|370
chr3_1 exon 60096222 60096381 60096222 ID=Msa0365840-mRNA-1:exon:11545;Parent=Msa0365840-mRNA-1
chr3_1 exon 60100299 60101467 60100299 ID=Msa0365840-mRNA-1:exon:11546;Parent=Msa0365840-mRNA-1
chr3_1 CDS 60096222 60096381 60096222 ID=Msa0365840-mRNA-1:cds;Parent=Msa0365840-mRNA-1
chr3_1 CDS 60100299 60101251 60100299 ID=Msa0365840-mRNA-1:cds;Parent=Msa0365840-mRNA-1
chr3_1 three_prime_UTR 60101252 60101467 60101252 ID=Msa0365840-mRNA-1:three_prime_utr;Parent=Msa0365840-mRNA-1
Gene Sequence

>Msa0365840

CAGCCGTGGCCGCCAACATTTATCATCTGCGATAATTTTCTCTTTTGGGCAGTTCGTGTTGGAAACCGGAGGAATATTCCGGTGGCTGCGTTCTGGACATCGTCCACGTCGAAGCTGTGGGTGCAATTTTTCCATATTTTCCTACAACGCAAGCATTTAGAAGATGGTGAAAATTTTATAGATTATATTCCATCAAATTCTTGGATTCATCTAGCAGATATTCCTCTTCTTGATAAGAACAACCAACAAATTTTGCAATGGTCTCTCAAAAGTTGTCAATGGATTCTCAAAGCACAATATCTATTACTACCTTCAATTTATGAGCTTGAACCTCAAGTAATTGATGCCTTAAAATCAAAGCTCACAATTCCCATTTACTCAATTGGTCCAAACATACCTTACTTTAATCTTGGACACAACTCAAATTCTCTAAATGCTACTAATAATGGTGCTGCCCAAAGTTACATAGATTGGCTAAATCTCCAACCCCATGGTTCCGTTTTGTACATTTCATATGGCAGTTATCTATCGGTTTCAAGAACACAAATGGATGAAATTGCATCTGCATTGCACGATAGCGGTGTTCGGTTCTTGTGGGTAGCGCGCGACGAGACTCATAGATTGAAACATATGTGTGGGAAAATGGGGTTTGTTGTGACATGGTGTGACCAATTGAGGGTATTGTTACATCCTTCTATAGGTGGTTATTGGACACATTGTGGTTGGAATTCCGTTATTGAAGGTGTTTTTTCTGGGGTTCCTTTTTTAACATTTCCACTTGTTTTGGATCAACCACTAATTAGTAAGATTATAGTTGAGGATTGGAAAATTGGGTGGAGAGTGAAAAAGGATGATAAGTTTGATACTTTGGTTAGAAGAGAGAACATTGTTGTGTTGATAAAGAAATTCATGGATTTGGATTTTGATTTAGGAAGGGATTTGAGAAAAAGAGCAAAGGAGCTTCAGCTTATATGTCAACTAGCAATAAAGAAAGGTGGATCATCAGAAATCAATGTCAAAGCATTTTTGAAGAATATAATGGAGAGTGGTTTGACACATGAAGCATCAAATGGACTACATGAAGTTCAAGTTGCTATTGAGAATTTCAATTAA

Protein sequence

>Msa0365840

QPWPPTFIICDNFLFWAVRVGNRRNIPVAAFWTSSTSKLWVQFFHIFLQRKHLEDGENFIDYIPSNSWIHLADIPLLDKNNQQILQWSLKSCQWILKAQYLLLPSIYELEPQVIDALKSKLTIPIYSIGPNIPYFNLGHNSNSLNATNNGAAQSYIDWLNLQPHGSVLYISYGSYLSVSRTQMDEIASALHDSGVRFLWVARDETHRLKHMCGKMGFVVTWCDQLRVLLHPSIGGYWTHCGWNSVIEGVFSGVPFLTFPLVLDQPLISKIIVEDWKIGWRVKKDDKFDTLVRRENIVVLIKKFMDLDFDLGRDLRKRAKELQLICQLAIKKGGSSEINVKAFLKNIMESGLTHEASNGLHEVQVAIENFN*