AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1226600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1226600 MtrunA17_Chr3g0106291 96.764 309 9 1 1 308 1 309 0.0 617
Msa1226600 MtrunA17_Chr1g0154711 35.789 285 163 6 30 308 235 505 1.09e-44 159
Msa1226600 MtrunA17_Chr5g0403781 38.672 256 135 7 61 308 206 447 5.17e-44 155
Msa1226600 MtrunA17_Chr2g0278991 32.836 268 146 9 51 305 1041 1287 2.78e-26 109
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1226600 AT2G30170.1 63.668 289 100 3 23 308 12 298 4.70e-130 372
Msa1226600 AT2G30170.3 67.421 221 71 1 89 308 1 221 1.88e-109 317
Msa1226600 AT2G30170.5 62.882 229 80 3 23 248 12 238 1.97e-95 283
Msa1226600 AT2G30170.6 69.231 195 59 1 55 248 9 203 1.42e-94 280
Msa1226600 AT2G30170.4 63.684 190 65 2 23 210 12 199 1.27e-79 241
Msa1226600 AT2G30170.2 66.456 158 52 1 152 308 1 158 7.67e-76 229
Msa1226600 AT2G30170.7 67.702 161 51 1 89 248 1 161 1.27e-74 227
Msa1226600 AT4G16580.1 40.945 254 131 5 61 308 221 461 5.99e-51 175
Msa1226600 AT5G66720.2 33.013 312 176 6 4 308 126 411 2.74e-48 166
Msa1226600 AT5G66720.1 33.758 314 174 7 4 308 126 414 1.28e-47 165
Msa1226600 AT4G33500.1 34.000 250 142 9 61 303 484 717 4.16e-31 123

Find 84 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGATGTTGTACATAATATT+TGG 0.167472 8_2:-1103524 Msa1226600:three_prime_UTR
CAGAACTTAACCCTGTAATT+AGG 0.272580 8_2:-1106960 Msa1226600:intron
GCTGTTGCTGATGGTGTCTC+TGG 0.289126 8_2:-1106644 Msa1226600:CDS
ATTATTCCCACGTGAATTGA+TGG 0.323223 8_2:-1106207 Msa1226600:CDS
CCATGGTGGAAGAAAGTTCT+TGG 0.345245 8_2:-1103922 Msa1226600:CDS
GAGTTAACACACCTAATTAC+AGG 0.352628 8_2:+1106949 None:intergenic
TTCTTTGTGAGCAACTATAA+TGG 0.354294 8_2:-1106677 Msa1226600:CDS
ATGATCCTCAGATTCTTATA+AGG 0.360349 8_2:-1105931 Msa1226600:CDS
CCATTGCATCAAGGTATGTT+TGG 0.361695 8_2:+1105473 None:intergenic
CTATTGATGAAAATGCTAAA+AGG 0.368498 8_2:-1107014 Msa1226600:CDS
TTCAATATTGAGAGCTGTAA+TGG 0.381901 8_2:-1107085 Msa1226600:CDS
TATTACTGTAATTGTTGGTC+AGG 0.384653 8_2:-1103791 Msa1226600:CDS
CTCTCAGAGCTCAGTTGGTA+TGG 0.396619 8_2:+1105502 None:intergenic
GGTAAGTAATGTGGAGTTGA+TGG 0.402055 8_2:-1104551 Msa1226600:CDS
AACATGAGATATTACCATTA+CGG 0.404411 8_2:+1105665 None:intergenic
CAACGGTTAGAGCAATTTCA+TGG 0.406391 8_2:+1104476 None:intergenic
GATGATATTACTGTAATTGT+TGG 0.415329 8_2:-1103796 Msa1226600:CDS
AGCAAAGGCATTAGCTAACT+TGG 0.423045 8_2:-1104344 Msa1226600:CDS
CTCTGGTGATCTTAACAATC+AGG 0.429033 8_2:+1103708 None:intergenic
TCTTGAAGGTTGAGAAAGGT+GGG 0.444907 8_2:-1106709 Msa1226600:intron
AACAAAGATGTTTCTGAGGC+TGG 0.460161 8_2:-1104451 Msa1226600:intron
ATTGCCAATGTTGGTGATTG+TGG 0.466988 8_2:-1105700 Msa1226600:CDS
ACTTAAGGCAACTCCTTCTC+TGG 0.471321 8_2:+1103691 None:intergenic
GCCCTTGCCTCCAATGAATA+CGG 0.481855 8_2:+1104286 None:intergenic
GTGAAGCATCATTGCTATGC+TGG 0.481916 8_2:-1105743 Msa1226600:intron
TTGCTATGCTGGAAAAGAAT+GGG 0.485820 8_2:-1105732 Msa1226600:CDS
CATGGTGGAAGAAAGTTCTT+GGG 0.496365 8_2:-1103921 Msa1226600:CDS
ACAATTGTCATGGGATCTGA+TGG 0.498716 8_2:-1104520 Msa1226600:CDS
AGAGGGAGTTGAAGTTAAAG+TGG 0.503608 8_2:-1107122 Msa1226600:five_prime_UTR
TTAGTGCCACGGTATACTTA+AGG 0.503627 8_2:+1103676 None:intergenic
TTCTTGAAGGTTGAGAAAGG+TGG 0.504622 8_2:-1106710 Msa1226600:intron
GGAGTTATTGCTGTTGCTGA+TGG 0.506025 8_2:-1106653 Msa1226600:CDS
ATTGCTATGCTGGAAAAGAA+TGG 0.507571 8_2:-1105733 Msa1226600:CDS
GGATTACGAGTTATCCGTAA+TGG 0.510558 8_2:-1105679 Msa1226600:intron
ATGAAGCTCTACATACTTCA+CGG 0.511085 8_2:+1103601 None:intergenic
CTGTTGCTGATGGTGTCTCT+GGG 0.512852 8_2:-1106643 Msa1226600:intron
TGATTCTCCGTATTCATTGG+AGG 0.517203 8_2:-1104293 Msa1226600:CDS
AATTCACGTGGGAATAATGA+AGG 0.517953 8_2:+1106212 None:intergenic
CTCCGTATTCATTGGAGGCA+AGG 0.518397 8_2:-1104288 Msa1226600:CDS
GCTTCACAGTTGGGCTGAAG+AGG 0.521493 8_2:-1106243 Msa1226600:intron
TCCGTATTCATTGGAGGCAA+GGG 0.535770 8_2:-1104287 Msa1226600:CDS
TATACCGTGGCACTAAACTT+TGG 0.536254 8_2:-1103669 Msa1226600:three_prime_UTR
TGTTTCTTGAAGGTTGAGAA+AGG 0.536545 8_2:-1106713 Msa1226600:intron
GTAATGTTCTTGTGGAGAAG+TGG 0.542397 8_2:+1105534 None:intergenic
CAACCCTCTCAGAGCTCAGT+TGG 0.543171 8_2:+1105497 None:intergenic
GAGTTGAAGTTAAAGTGGTA+AGG 0.543527 8_2:-1107117 Msa1226600:five_prime_UTR
GAAGTTAAAGTGGTAAGGAA+TGG 0.545965 8_2:-1107112 Msa1226600:exon
GTTCTTGGGATGAAGTTGAC+AGG 0.546334 8_2:-1103907 Msa1226600:intron
GGAAGGAGACACAATTGTCA+TGG 0.550201 8_2:-1104530 Msa1226600:CDS
TAAAGGCATTCAGCTTACAT+TGG 0.551771 8_2:+1103420 None:intergenic
AGAAACATCTTTGTTTGCAA+CGG 0.553090 8_2:+1104459 None:intergenic
CATGCTGCTACATTCTCTAC+AGG 0.556023 8_2:-1105902 Msa1226600:CDS
GTGTGAATGTGAAGAATAGA+GGG 0.560295 8_2:-1107139 Msa1226600:five_prime_UTR
CAGTCAAAGTAATGTTCTTG+TGG 0.563107 8_2:+1105526 None:intergenic
TCTCAGAGCTCAGTTGGTAT+GGG 0.569458 8_2:+1105503 None:intergenic
CTTGAAGGTTGAGAAAGGTG+GGG 0.569673 8_2:-1106708 Msa1226600:intron
GCAAAGCAAGAGAACTTCCA+TGG 0.570066 8_2:+1103623 None:intergenic
TGTGTGAATGTGAAGAATAG+AGG 0.570195 8_2:-1107140 Msa1226600:five_prime_UTR
TAAATGTTACCATTGCATCA+AGG 0.570236 8_2:+1105464 None:intergenic
AATCTAAAGATTGCCAATGT+TGG 0.572338 8_2:-1105709 Msa1226600:CDS
TACATAATATTTGGAACCAG+TGG 0.574189 8_2:-1103515 Msa1226600:three_prime_UTR
TTTGTGAGCAACTATAATGG+TGG 0.577961 8_2:-1106674 Msa1226600:CDS
AGTAATGTGGAGTTGATGGA+AGG 0.579559 8_2:-1104547 Msa1226600:CDS
CCAAACATACCTTGATGCAA+TGG 0.590788 8_2:-1105473 Msa1226600:intron
TTCATTGGAGGCAAGGGCCA+AGG 0.591316 8_2:-1104281 Msa1226600:intron
CTTGGCAAACAGTCATGCAA+TGG 0.591819 8_2:-1104326 Msa1226600:CDS
CCAAGAACTTTCTTCCACCA+TGG 0.595236 8_2:+1103922 None:intergenic
GAAGGAGACACAATTGTCAT+GGG 0.599986 8_2:-1104529 Msa1226600:CDS
ATTGTTAAGATCACCAGAGA+AGG 0.600071 8_2:-1103704 Msa1226600:three_prime_UTR
TAATCCACAATCACCAACAT+TGG 0.602187 8_2:+1105696 None:intergenic
CAACTGAGCTCTGAGAGGGT+TGG 0.619782 8_2:-1105496 Msa1226600:CDS
TGCAAACAAAGATGTTTCTG+AGG 0.619881 8_2:-1104455 Msa1226600:CDS
AGTTAACACACCTAATTACA+GGG 0.621910 8_2:+1106950 None:intergenic
ATACCAACTGAGCTCTGAGA+GGG 0.631786 8_2:-1105500 Msa1226600:CDS
TTGATGAAAATGCTAAAAGG+AGG 0.632849 8_2:-1107011 Msa1226600:CDS
GCTTTCCTTATAAGAATCTG+AGG 0.633109 8_2:+1105926 None:intergenic
ATGACCAAAGTTTAGTGCCA+CGG 0.636017 8_2:+1103665 None:intergenic
CAATTGTCATGGGATCTGAT+GGG 0.648322 8_2:-1104519 Msa1226600:CDS
GCATTAGCCATCAATTCACG+TGG 0.652412 8_2:+1106200 None:intergenic
ATTATGCTGTAAAGAAAACA+AGG 0.653479 8_2:-1103732 Msa1226600:three_prime_UTR
CATACCAACTGAGCTCTGAG+AGG 0.655681 8_2:-1105501 Msa1226600:CDS
GAAGATATGTTATGAATGTG+TGG 0.660697 8_2:+1107036 None:intergenic
CATTAGCCATCAATTCACGT+GGG 0.738708 8_2:+1106201 None:intergenic
GAGTTGCCTTAAGTATACCG+TGG 0.746869 8_2:-1103682 Msa1226600:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATGCTTAATAATTTTTTT+TGG - chr8_2:1103674-1103693 Msa1226600:three_prime_UTR 10.0%
!!! ATAATTACTATTACCTTTTT+TGG + chr8_2:1103783-1103802 None:intergenic 15.0%
!!! TTTTCAGTTATAAATTTAGA+TGG - chr8_2:1104249-1104268 Msa1226600:intron 15.0%
!! CATACACAAATTTATATATA+AGG + chr8_2:1105236-1105255 None:intergenic 15.0%
!!! CTATTTTATCAAATTATTAC+CGG + chr8_2:1105632-1105651 None:intergenic 15.0%
!!! TCTAAAATTTATTTTTTCCA+TGG - chr8_2:1106940-1106959 Msa1226600:intron 15.0%
!! TTAAATTGTTTATCCAAACA+AGG - chr8_2:1104171-1104190 Msa1226600:intron 20.0%
!!! TTATAATTTTGTACAAGATG+AGG - chr8_2:1104403-1104422 Msa1226600:intron 20.0%
!!! AAGTTTATCCTCTTTTATTT+AGG - chr8_2:1104715-1104734 Msa1226600:intron 20.0%
!!! TTTTATTTAGGTTGCTAATT+TGG - chr8_2:1104727-1104746 Msa1226600:intron 20.0%
!! GTAATATCTCATGTTATAAA+AGG - chr8_2:1104923-1104942 Msa1226600:intron 20.0%
!! GAAAATAATAACAAAGAAAC+TGG + chr8_2:1105793-1105812 None:intergenic 20.0%
!!! TATTTTATGATTGTCAGTTT+TGG - chr8_2:1106390-1106409 Msa1226600:intron 20.0%
!!! TTACTTTTTCTATTGTTAAC+AGG - chr8_2:1106751-1106770 Msa1226600:intron 20.0%
! CTATTGATGAAAATGCTAAA+AGG - chr8_2:1103566-1103585 Msa1226600:three_prime_UTR 25.0%
!! TTTTGGTCTATGTTAAAAAC+TGG - chr8_2:1103691-1103710 Msa1226600:three_prime_UTR 25.0%
! TTTGGTCTATGTTAAAAACT+GGG - chr8_2:1103692-1103711 Msa1226600:three_prime_UTR 25.0%
! CTTACTCACTAATTCATTAT+TGG - chr8_2:1103967-1103986 Msa1226600:intron 25.0%
! ATATAAAAACTTACACCTTC+TGG + chr8_2:1104109-1104128 None:intergenic 25.0%
! TTCAAAAGAATGAATGTAAC+TGG + chr8_2:1104494-1104513 None:intergenic 25.0%
! ATTAGCAACCTAAATAAAAG+AGG + chr8_2:1104726-1104745 None:intergenic 25.0%
! AACATGAGATATTACCATTA+CGG + chr8_2:1104918-1104937 None:intergenic 25.0%
! GATGAGGAAAAAAACATATA+GGG + chr8_2:1104960-1104979 None:intergenic 25.0%
! CACAAATTTATATATAAGGC+AGG + chr8_2:1105232-1105251 None:intergenic 25.0%
! AAATAGTCAATGATGAGAAA+AGG - chr8_2:1105258-1105277 Msa1226600:intron 25.0%
! AATAGTCAATGATGAGAAAA+GGG - chr8_2:1105259-1105278 Msa1226600:intron 25.0%
!! ATTAGTTGTGGTGATTTTAA+TGG + chr8_2:1105481-1105500 None:intergenic 25.0%
!! CTTAAGAAAATGATTAGTTG+TGG + chr8_2:1105493-1105512 None:intergenic 25.0%
!! TTTTATCAAATTATTACCGG+TGG + chr8_2:1105629-1105648 None:intergenic 25.0%
!! TCGATTTTGCATAGAATTTT+TGG - chr8_2:1105726-1105745 Msa1226600:CDS 25.0%
!! CGATTTTGCATAGAATTTTT+GGG - chr8_2:1105727-1105746 Msa1226600:CDS 25.0%
! CTAATGTACAACAATAACTA+TGG + chr8_2:1105815-1105834 None:intergenic 25.0%
! AACAGAAATACAAGAGTTTA+GGG + chr8_2:1105842-1105861 None:intergenic 25.0%
! TAACAGAAATACAAGAGTTT+AGG + chr8_2:1105843-1105862 None:intergenic 25.0%
! AATAGCTTAGTTTCTTGATT+TGG - chr8_2:1105864-1105883 Msa1226600:intron 25.0%
! ATAGCTTAGTTTCTTGATTT+GGG - chr8_2:1105865-1105884 Msa1226600:intron 25.0%
! CAATATGATAACACATAACT+TGG + chr8_2:1105897-1105916 None:intergenic 25.0%
! AACAGAAATACATTTGTATC+AGG + chr8_2:1105976-1105995 None:intergenic 25.0%
!! ACAAACTTATTTCTTTACCT+TGG + chr8_2:1106319-1106338 None:intergenic 25.0%
! TTGGAAAATGACTTCTTAAT+AGG - chr8_2:1106409-1106428 Msa1226600:intron 25.0%
! TGGAAAATGACTTCTTAATA+GGG - chr8_2:1106410-1106429 Msa1226600:intron 25.0%
!!! ATTAGTTTGCGTAAAATAGA+TGG - chr8_2:1106552-1106571 Msa1226600:intron 25.0%
! GATGATATTACTGTAATTGT+TGG - chr8_2:1106784-1106803 Msa1226600:intron 25.0%
! ATTATGCTGTAAAGAAAACA+AGG - chr8_2:1106848-1106867 Msa1226600:CDS 25.0%
! GAGATGTTGTACATAATATT+TGG - chr8_2:1107056-1107075 Msa1226600:CDS 25.0%
TTCAATATTGAGAGCTGTAA+TGG - chr8_2:1103495-1103514 Msa1226600:three_prime_UTR 30.0%
GAAGATATGTTATGAATGTG+TGG + chr8_2:1103547-1103566 None:intergenic 30.0%
TTGATGAAAATGCTAAAAGG+AGG - chr8_2:1103569-1103588 Msa1226600:three_prime_UTR 30.0%
AGTTAACACACCTAATTACA+GGG + chr8_2:1103633-1103652 None:intergenic 30.0%
! CTATGTTAAAAACTGGGTTT+TGG - chr8_2:1103698-1103717 Msa1226600:three_prime_UTR 30.0%
!!! GGGTTTTGGTTTTGTTTTAT+AGG - chr8_2:1103712-1103731 Msa1226600:three_prime_UTR 30.0%
!!! TTTGTTTTATAGGTCATCAG+AGG - chr8_2:1103722-1103741 Msa1226600:three_prime_UTR 30.0%
!!! ACTATTACCTTTTTTGGATG+TGG + chr8_2:1103777-1103796 None:intergenic 30.0%
TTCTTTGTGAGCAACTATAA+TGG - chr8_2:1103903-1103922 Msa1226600:intron 30.0%
CAACGAATAAATGATGTATC+TGG + chr8_2:1104052-1104071 None:intergenic 30.0%
! AATGATAGTAATGCCTTGTT+TGG + chr8_2:1104187-1104206 None:intergenic 30.0%
!! ACAAAGCAAGATTTTAGTCA+GGG + chr8_2:1104229-1104248 None:intergenic 30.0%
!! AACAAAGCAAGATTTTAGTC+AGG + chr8_2:1104230-1104249 None:intergenic 30.0%
! TAATTTTGTACAAGATGAGG+AGG - chr8_2:1104406-1104425 Msa1226600:intron 30.0%
ATAATCAGTATCTGCGTTTA+GGG + chr8_2:1104439-1104458 None:intergenic 30.0%
GAGCTGTAATTCAATAAGAA+TGG - chr8_2:1104550-1104569 Msa1226600:CDS 30.0%
!! CATGTTGATTCGTTGAATAT+TGG - chr8_2:1104607-1104626 Msa1226600:intron 30.0%
!! TGAATATTGGTTGATTTTGC+AGG - chr8_2:1104620-1104639 Msa1226600:intron 30.0%
ATGATCCTCAGATTCTTATA+AGG - chr8_2:1104649-1104668 Msa1226600:intron 30.0%
AAATTGTTGAGGCTATATTG+TGG + chr8_2:1104802-1104821 None:intergenic 30.0%
AATCTAAAGATTGCCAATGT+TGG - chr8_2:1104871-1104890 Msa1226600:intron 30.0%
CGATGAGGAAAAAAACATAT+AGG + chr8_2:1104961-1104980 None:intergenic 30.0%
TGTTGAGAACTTGAATTTCT+CGG - chr8_2:1104994-1105013 Msa1226600:intron 30.0%
AAAAGATTACTTGACCTGAA+AGG + chr8_2:1105026-1105045 None:intergenic 30.0%
TAAATGTTACCATTGCATCA+AGG + chr8_2:1105119-1105138 None:intergenic 30.0%
AAGTGACACTTATTATGAGA+CGG + chr8_2:1105399-1105418 None:intergenic 30.0%
! TTAACCCAAAGCCAATATTT+TGG + chr8_2:1105765-1105784 None:intergenic 30.0%
!! AAAATATTGGCTTTGGGTTA+AGG - chr8_2:1105764-1105783 Msa1226600:intron 30.0%
!! AAATATTGGCTTTGGGTTAA+GGG - chr8_2:1105765-1105784 Msa1226600:intron 30.0%
ACAGAAATACAAGAGTTTAG+GGG + chr8_2:1105841-1105860 None:intergenic 30.0%
AATGAGATTATATCCCCTTT+GGG + chr8_2:1105948-1105967 None:intergenic 30.0%
AAATGAGATTATATCCCCTT+TGG + chr8_2:1105949-1105968 None:intergenic 30.0%
AGAAAAACAGGTAAGTAATG+TGG - chr8_2:1106020-1106039 Msa1226600:intron 30.0%
! AGAAACATCTTTGTTTGCAA+CGG + chr8_2:1106124-1106143 None:intergenic 30.0%
AAACAGATCAACAAAGAAGA+AGG + chr8_2:1106161-1106180 None:intergenic 30.0%
!! TTTTGATTCTCCGTATTCAT+TGG - chr8_2:1106284-1106303 Msa1226600:intron 30.0%
!!! CGACTCTTTTAAAACTTAGA+AGG + chr8_2:1106442-1106461 None:intergenic 30.0%
! TGCATTGTCAACAATTTTAC+AGG - chr8_2:1106624-1106643 Msa1226600:intron 30.0%
! GCATTGTCAACAATTTTACA+GGG - chr8_2:1106625-1106644 Msa1226600:intron 30.0%
! CTTTTTCTATTGTTAACAGG+TGG - chr8_2:1106754-1106773 Msa1226600:intron 30.0%
TATTACTGTAATTGTTGGTC+AGG - chr8_2:1106789-1106808 Msa1226600:intron 30.0%
! TACATAATATTTGGAACCAG+TGG - chr8_2:1107065-1107084 Msa1226600:CDS 30.0%
TGTGTGAATGTGAAGAATAG+AGG - chr8_2:1103440-1103459 Msa1226600:three_prime_UTR 35.0%
GTGTGAATGTGAAGAATAGA+GGG - chr8_2:1103441-1103460 Msa1226600:three_prime_UTR 35.0%
GAGTTGAAGTTAAAGTGGTA+AGG - chr8_2:1103463-1103482 Msa1226600:three_prime_UTR 35.0%
GAAGTTAAAGTGGTAAGGAA+TGG - chr8_2:1103468-1103487 Msa1226600:three_prime_UTR 35.0%
CAGAACTTAACCCTGTAATT+AGG - chr8_2:1103620-1103639 Msa1226600:three_prime_UTR 35.0%
GAGTTAACACACCTAATTAC+AGG + chr8_2:1103634-1103653 None:intergenic 35.0%
! TCAGAGGTTTCATTTTCTGT+TGG - chr8_2:1103738-1103757 Msa1226600:three_prime_UTR 35.0%
! CAGAGGTTTCATTTTCTGTT+GGG - chr8_2:1103739-1103758 Msa1226600:three_prime_UTR 35.0%
!!! CCTTTTTTGGATGTGGAATA+AGG + chr8_2:1103770-1103789 None:intergenic 35.0%
CCTTATTCCACATCCAAAAA+AGG - chr8_2:1103767-1103786 Msa1226600:exon 35.0%
TTGTTAGAGACTTAGAGTTG+TGG - chr8_2:1103844-1103863 Msa1226600:intron 35.0%
TGTTTCTTGAAGGTTGAGAA+AGG - chr8_2:1103867-1103886 Msa1226600:intron 35.0%
TTTGTGAGCAACTATAATGG+TGG - chr8_2:1103906-1103925 Msa1226600:intron 35.0%
TGCTTATAATAGTGACCAGA+AGG - chr8_2:1104091-1104110 Msa1226600:intron 35.0%
TTTGTGTTATGCTTCACAGT+TGG - chr8_2:1104327-1104346 Msa1226600:CDS 35.0%
TTGTGTTATGCTTCACAGTT+GGG - chr8_2:1104328-1104347 Msa1226600:CDS 35.0%
AATTCACGTGGGAATAATGA+AGG + chr8_2:1104371-1104390 None:intergenic 35.0%
ATTATTCCCACGTGAATTGA+TGG - chr8_2:1104373-1104392 Msa1226600:intron 35.0%
CATAATCAGTATCTGCGTTT+AGG + chr8_2:1104440-1104459 None:intergenic 35.0%
ATGGTTATATGCATGTTGTC+TGG - chr8_2:1104569-1104588 Msa1226600:intron 35.0%
GCTTTCCTTATAAGAATCTG+AGG + chr8_2:1104657-1104676 None:intergenic 35.0%
TCACAGACAAGAAATTGTTG+AGG + chr8_2:1104813-1104832 None:intergenic 35.0%
ATTGCTATGCTGGAAAAGAA+TGG - chr8_2:1104847-1104866 Msa1226600:intron 35.0%
TTGCTATGCTGGAAAAGAAT+GGG - chr8_2:1104848-1104867 Msa1226600:intron 35.0%
TAATCCACAATCACCAACAT+TGG + chr8_2:1104887-1104906 None:intergenic 35.0%
!! CATTCAAAGTGTTTTCGATG+AGG + chr8_2:1104976-1104995 None:intergenic 35.0%
CAGTCAAAGTAATGTTCTTG+TGG + chr8_2:1105057-1105076 None:intergenic 35.0%
ACAAATAGAGGAGTAGGAAA+AGG + chr8_2:1105178-1105197 None:intergenic 35.0%
AGTGAAGTGAAGACAAATAG+AGG + chr8_2:1105190-1105209 None:intergenic 35.0%
CAATCTGTGCAAGAAAGTTT+AGG + chr8_2:1105308-1105327 None:intergenic 35.0%
!!! TACCTGTGTCATTTTCATGT+CGG - chr8_2:1105669-1105688 Msa1226600:intron 35.0%
TTTCAGATTGAAGTTGTGTC+TGG + chr8_2:1105704-1105723 None:intergenic 35.0%
!! AATATTGGCTTTGGGTTAAG+GGG - chr8_2:1105766-1105785 Msa1226600:intron 35.0%
CAGAAATACAAGAGTTTAGG+GGG + chr8_2:1105840-1105859 None:intergenic 35.0%
!! TAGTTTCTTGATTTGGGTGA+AGG - chr8_2:1105871-1105890 Msa1226600:intron 35.0%
ACTAACCTTGACAGAAAAAC+AGG - chr8_2:1106008-1106027 Msa1226600:intron 35.0%
!! ACTTACCTGTTTTTCTGTCA+AGG + chr8_2:1106016-1106035 None:intergenic 35.0%
!!! TCTGATGGGCTTTTTGATAA+TGG - chr8_2:1106075-1106094 Msa1226600:intron 35.0%
! TGCAAACAAAGATGTTTCTG+AGG - chr8_2:1106125-1106144 Msa1226600:intron 35.0%
CTTCTTTGTTGATCTGTTTG+AGG - chr8_2:1106162-1106181 Msa1226600:intron 35.0%
! GTTCATTTTGTTGCTAGCAA+AGG - chr8_2:1106221-1106240 Msa1226600:CDS 35.0%
! GAACGTGTTTCAACTTCTTT+TGG + chr8_2:1106526-1106545 None:intergenic 35.0%
ATTGTTAAGATCACCAGAGA+AGG - chr8_2:1106876-1106895 Msa1226600:intron 35.0%
ATGAAGCTCTACATACTTCA+CGG + chr8_2:1106982-1107001 None:intergenic 35.0%
!! TACATGTTTTTGCTTACCAC+TGG + chr8_2:1107084-1107103 None:intergenic 35.0%
AGAGGGAGTTGAAGTTAAAG+TGG - chr8_2:1103458-1103477 Msa1226600:three_prime_UTR 40.0%
AGAGTTGTGGTGTTTCTTGA+AGG - chr8_2:1103857-1103876 Msa1226600:intron 40.0%
TTCTTGAAGGTTGAGAAAGG+TGG - chr8_2:1103870-1103889 Msa1226600:intron 40.0%
TCTTGAAGGTTGAGAAAGGT+GGG - chr8_2:1103871-1103890 Msa1226600:intron 40.0%
CATTAGCCATCAATTCACGT+GGG + chr8_2:1104382-1104401 None:intergenic 40.0%
!! ATTGCCAATGTTGGTGATTG+TGG - chr8_2:1104880-1104899 Msa1226600:intron 40.0%
GGATTACGAGTTATCCGTAA+TGG - chr8_2:1104901-1104920 Msa1226600:intron 40.0%
GTAATGTTCTTGTGGAGAAG+TGG + chr8_2:1105049-1105068 None:intergenic 40.0%
CCATTGCATCAAGGTATGTT+TGG + chr8_2:1105110-1105129 None:intergenic 40.0%
CCAAACATACCTTGATGCAA+TGG - chr8_2:1105107-1105126 Msa1226600:intron 40.0%
GTGAAGACAAATAGAGGAGT+AGG + chr8_2:1105184-1105203 None:intergenic 40.0%
TCTGTGCAAGAAAGTTTAGG+TGG + chr8_2:1105305-1105324 None:intergenic 40.0%
ACACTTATTATGAGACGGAG+GGG + chr8_2:1105394-1105413 None:intergenic 40.0%
GACACTTATTATGAGACGGA+GGG + chr8_2:1105395-1105414 None:intergenic 40.0%
TGACACTTATTATGAGACGG+AGG + chr8_2:1105396-1105415 None:intergenic 40.0%
CTCAGACAAGTGTAGCATTT+GGG + chr8_2:1105528-1105547 None:intergenic 40.0%
TCTCAGACAAGTGTAGCATT+TGG + chr8_2:1105529-1105548 None:intergenic 40.0%
AATGCTACACTTGTCTGAGA+CGG - chr8_2:1105529-1105548 Msa1226600:CDS 40.0%
TTATGTGTCAACGTCGTCTT+TGG + chr8_2:1105603-1105622 None:intergenic 40.0%
!! CCAGCCAAAATATTGGCTTT+GGG - chr8_2:1105758-1105777 Msa1226600:intron 40.0%
TACACAACACAACTTCCCAA+AGG - chr8_2:1105930-1105949 Msa1226600:CDS 40.0%
ACACAACACAACTTCCCAAA+GGG - chr8_2:1105931-1105950 Msa1226600:CDS 40.0%
GGTAAGTAATGTGGAGTTGA+TGG - chr8_2:1106029-1106048 Msa1226600:intron 40.0%
!! AGTAATGTGGAGTTGATGGA+AGG - chr8_2:1106033-1106052 Msa1226600:intron 40.0%
GAAGGAGACACAATTGTCAT+GGG - chr8_2:1106051-1106070 Msa1226600:intron 40.0%
ACAATTGTCATGGGATCTGA+TGG - chr8_2:1106060-1106079 Msa1226600:intron 40.0%
CAATTGTCATGGGATCTGAT+GGG - chr8_2:1106061-1106080 Msa1226600:intron 40.0%
CAACGGTTAGAGCAATTTCA+TGG + chr8_2:1106107-1106126 None:intergenic 40.0%
!! AACAAAGATGTTTCTGAGGC+TGG - chr8_2:1106129-1106148 Msa1226600:intron 40.0%
!! AGCAAAGGCATTAGCTAACT+TGG - chr8_2:1106236-1106255 Msa1226600:CDS 40.0%
TGATTCTCCGTATTCATTGG+AGG - chr8_2:1106287-1106306 Msa1226600:intron 40.0%
! CATGGTGGAAGAAAGTTCTT+GGG - chr8_2:1106659-1106678 Msa1226600:CDS 40.0%
CTCTGGTGATCTTAACAATC+AGG + chr8_2:1106875-1106894 None:intergenic 40.0%
TTAGTGCCACGGTATACTTA+AGG + chr8_2:1106907-1106926 None:intergenic 40.0%
TATACCGTGGCACTAAACTT+TGG - chr8_2:1106911-1106930 Msa1226600:intron 40.0%
ATGACCAAAGTTTAGTGCCA+CGG + chr8_2:1106918-1106937 None:intergenic 40.0%
CTTGAAGGTTGAGAAAGGTG+GGG - chr8_2:1103872-1103891 Msa1226600:intron 45.0%
! GGAGTTATTGCTGTTGCTGA+TGG - chr8_2:1103927-1103946 Msa1226600:CDS 45.0%
GCATTAGCCATCAATTCACG+TGG + chr8_2:1104383-1104402 None:intergenic 45.0%
! CAGTATCTGCGTTTAGGGTA+CGG + chr8_2:1104434-1104453 None:intergenic 45.0%
CATGCTGCTACATTCTCTAC+AGG - chr8_2:1104678-1104697 Msa1226600:intron 45.0%
! GTGAAGCATCATTGCTATGC+TGG - chr8_2:1104837-1104856 Msa1226600:intron 45.0%
!! TTTCTCGGTGTTCTCCTTTC+AGG - chr8_2:1105009-1105028 Msa1226600:intron 45.0%
! TCTCAGAGCTCAGTTGGTAT+GGG + chr8_2:1105080-1105099 None:intergenic 45.0%
!! ATACCAACTGAGCTCTGAGA+GGG - chr8_2:1105080-1105099 Msa1226600:intron 45.0%
! GTGTAGCATCGGATTATGCT+GGG + chr8_2:1105363-1105382 None:intergenic 45.0%
! TGTGTAGCATCGGATTATGC+TGG + chr8_2:1105364-1105383 None:intergenic 45.0%
!! GGGGTATTGTTGTGTAGCAT+CGG + chr8_2:1105374-1105393 None:intergenic 45.0%
CACTTATTATGAGACGGAGG+GGG + chr8_2:1105393-1105412 None:intergenic 45.0%
CGTTGACACATAAACACCAC+CGG - chr8_2:1105610-1105629 Msa1226600:intron 45.0%
CACCGACATGAAAATGACAC+AGG + chr8_2:1105674-1105693 None:intergenic 45.0%
!!! CTGTGTCATTTTCATGTCGG+TGG - chr8_2:1105672-1105691 Msa1226600:intron 45.0%
!!! TGTCATTTTCATGTCGGTGG+CGG - chr8_2:1105675-1105694 Msa1226600:intron 45.0%
TCACGTGCCAGCCAAAATAT+TGG - chr8_2:1105751-1105770 Msa1226600:intron 45.0%
!! GCCAGCCAAAATATTGGCTT+TGG - chr8_2:1105757-1105776 Msa1226600:intron 45.0%
!!! CCCAAAGCCAATATTTTGGC+TGG + chr8_2:1105761-1105780 None:intergenic 45.0%
CACAACACAACTTCCCAAAG+GGG - chr8_2:1105932-1105951 Msa1226600:CDS 45.0%
GGAAGGAGACACAATTGTCA+TGG - chr8_2:1106050-1106069 Msa1226600:intron 45.0%
!! AGATGTTTCTGAGGCTGGTA+TGG - chr8_2:1106134-1106153 Msa1226600:intron 45.0%
GAGGAATTGCGATCAACTGT+AGG - chr8_2:1106181-1106200 Msa1226600:CDS 45.0%
CTTGGCAAACAGTCATGCAA+TGG - chr8_2:1106254-1106273 Msa1226600:intron 45.0%
TCCGTATTCATTGGAGGCAA+GGG - chr8_2:1106293-1106312 Msa1226600:intron 45.0%
!!! TACAGGGTTTTGAAGCTCCA+TGG - chr8_2:1106641-1106660 Msa1226600:intron 45.0%
CCAAGAACTTTCTTCCACCA+TGG + chr8_2:1106661-1106680 None:intergenic 45.0%
! CCATGGTGGAAGAAAGTTCT+TGG - chr8_2:1106658-1106677 Msa1226600:CDS 45.0%
GTTCTTGGGATGAAGTTGAC+AGG - chr8_2:1106673-1106692 Msa1226600:CDS 45.0%
TGGGATGAAGTTGACAGGTA+TGG - chr8_2:1106678-1106697 Msa1226600:CDS 45.0%
ACTTAAGGCAACTCCTTCTC+TGG + chr8_2:1106892-1106911 None:intergenic 45.0%
GAGTTGCCTTAAGTATACCG+TGG - chr8_2:1106898-1106917 Msa1226600:intron 45.0%
GCAAAGCAAGAGAACTTCCA+TGG + chr8_2:1106960-1106979 None:intergenic 45.0%
! CTGTTGCTGATGGTGTCTCT+GGG - chr8_2:1103937-1103956 Msa1226600:CDS 50.0%
! CTCTCAGAGCTCAGTTGGTA+TGG + chr8_2:1105081-1105100 None:intergenic 50.0%
!! CATACCAACTGAGCTCTGAG+AGG - chr8_2:1105079-1105098 Msa1226600:intron 50.0%
! CTACACTTGTCTGAGACGGA+AGG - chr8_2:1105533-1105552 Msa1226600:CDS 50.0%
CTCCGTATTCATTGGAGGCA+AGG - chr8_2:1106292-1106311 Msa1226600:intron 50.0%
GCCCTTGCCTCCAATGAATA+CGG + chr8_2:1106297-1106316 None:intergenic 50.0%
!!! AGGGTTTTGAAGCTCCATGG+TGG - chr8_2:1106644-1106663 Msa1226600:CDS 50.0%
! GCTGTTGCTGATGGTGTCTC+TGG - chr8_2:1103936-1103955 Msa1226600:CDS 55.0%
GCTTCACAGTTGGGCTGAAG+AGG - chr8_2:1104337-1104356 Msa1226600:CDS 55.0%
CAACCCTCTCAGAGCTCAGT+TGG + chr8_2:1105086-1105105 None:intergenic 55.0%
!! CAACTGAGCTCTGAGAGGGT+TGG - chr8_2:1105084-1105103 Msa1226600:intron 55.0%
TTCATTGGAGGCAAGGGCCA+AGG - chr8_2:1106299-1106318 Msa1226600:intron 55.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 1103422 1107180 1103422 ID=Msa1226600;Name=Msa1226600
chr8_2 mRNA 1103422 1107180 1103422 ID=Msa1226600-mRNA-1;Parent=Msa1226600;Name=Msa1226600-mRNA-1;_AED=0.21;_eAED=0.21;_QI=65|1|1|1|1|1|11|355|308
chr8_2 exon 1103422 1103829 1103422 ID=Msa1226600-mRNA-1:exon:275;Parent=Msa1226600-mRNA-1
chr8_2 exon 1103908 1103956 1103908 ID=Msa1226600-mRNA-1:exon:274;Parent=Msa1226600-mRNA-1
chr8_2 exon 1104282 1104364 1104282 ID=Msa1226600-mRNA-1:exon:273;Parent=Msa1226600-mRNA-1
chr8_2 exon 1104452 1104572 1104452 ID=Msa1226600-mRNA-1:exon:272;Parent=Msa1226600-mRNA-1
chr8_2 exon 1105474 1105571 1105474 ID=Msa1226600-mRNA-1:exon:271;Parent=Msa1226600-mRNA-1
chr8_2 exon 1105680 1105759 1105680 ID=Msa1226600-mRNA-1:exon:270;Parent=Msa1226600-mRNA-1
chr8_2 exon 1105890 1105960 1105890 ID=Msa1226600-mRNA-1:exon:269;Parent=Msa1226600-mRNA-1
chr8_2 exon 1106175 1106256 1106175 ID=Msa1226600-mRNA-1:exon:268;Parent=Msa1226600-mRNA-1
chr8_2 exon 1106644 1106723 1106644 ID=Msa1226600-mRNA-1:exon:267;Parent=Msa1226600-mRNA-1
chr8_2 exon 1106814 1106868 1106814 ID=Msa1226600-mRNA-1:exon:266;Parent=Msa1226600-mRNA-1
chr8_2 exon 1106961 1107180 1106961 ID=Msa1226600-mRNA-1:exon:265;Parent=Msa1226600-mRNA-1
chr8_2 five_prime_UTR 1107116 1107180 1107116 ID=Msa1226600-mRNA-1:five_prime_utr;Parent=Msa1226600-mRNA-1
chr8_2 CDS 1106961 1107115 1106961 ID=Msa1226600-mRNA-1:cds;Parent=Msa1226600-mRNA-1
chr8_2 CDS 1106814 1106868 1106814 ID=Msa1226600-mRNA-1:cds;Parent=Msa1226600-mRNA-1
chr8_2 CDS 1106644 1106723 1106644 ID=Msa1226600-mRNA-1:cds;Parent=Msa1226600-mRNA-1
chr8_2 CDS 1106175 1106256 1106175 ID=Msa1226600-mRNA-1:cds;Parent=Msa1226600-mRNA-1
chr8_2 CDS 1105890 1105960 1105890 ID=Msa1226600-mRNA-1:cds;Parent=Msa1226600-mRNA-1
chr8_2 CDS 1105680 1105759 1105680 ID=Msa1226600-mRNA-1:cds;Parent=Msa1226600-mRNA-1
chr8_2 CDS 1105474 1105571 1105474 ID=Msa1226600-mRNA-1:cds;Parent=Msa1226600-mRNA-1
chr8_2 CDS 1104452 1104572 1104452 ID=Msa1226600-mRNA-1:cds;Parent=Msa1226600-mRNA-1
chr8_2 CDS 1104282 1104364 1104282 ID=Msa1226600-mRNA-1:cds;Parent=Msa1226600-mRNA-1
chr8_2 CDS 1103908 1103956 1103908 ID=Msa1226600-mRNA-1:cds;Parent=Msa1226600-mRNA-1
chr8_2 CDS 1103777 1103829 1103777 ID=Msa1226600-mRNA-1:cds;Parent=Msa1226600-mRNA-1
chr8_2 three_prime_UTR 1103422 1103776 1103422 ID=Msa1226600-mRNA-1:three_prime_utr;Parent=Msa1226600-mRNA-1
Gene Sequence

>Msa1226600

ATGGCTATTTCAATATTGAGAGCTGTAATGGTGTCTAATTCTCATTGTCAATCTCAACCACACATTCATAACATATCTTCTATTGATGAAAATGCTAAAAGGAGGAAAAGAGTAGTTTTCTCTTCTCATTCTTCAGAACTTAACCCTGTAATTAGGTCATCAGAGGTTTCATTTTCTGTTGGGACTTGCCTTATTCCACATCCAAAAAAGGTTGAGAAAGGTGGGGAAGATGCTTTCTTTGTGAGCAACTATAATGGTGGAGTTATTGCTGTTGCTGATGGTGTCTCTGGTTGGGCTGAAGAGGATGTAGATCCTTCATTATTCCCACGTGAATTGATGGCTAATGCTTATAATTTTGTACAAGATGAGGAGGTGAATAATGATCCTCAGATTCTTATAAGGAAAGCACATGCTGCTACATTCTCTACAGGCTCAGCAACTGTCATCATTGCTATGCTGGAAAAGAATGGGAATCTAAAGATTGCCAATGTTGGTGATTGTGGATTACGAGTTATCCGTAATGGTCAAGTAATCTTTTCCACTTCTCCACAAGAACATTACTTTGACTGCCCATACCAACTGAGCTCTGAGAGGGTTGGCCAAACATACCTTGATGCAATGGTAAGTAATGTGGAGTTGATGGAAGGAGACACAATTGTCATGGGATCTGATGGGCTTTTTGATAATGGTTTTGACCATGAAATTGCTCTAACCGTTGCAAACAAAGATGTTTCTGAGGCTGCAAAGGCATTAGCTAACTTGGCAAACAGTCATGCAATGGATTCAAATTTTGATTCTCCGTATTCATTGGAGGCAAGGGCCAAGGGTTTTGAAGCTCCATGGTGGAAGAAAGTTCTTGGGATGAAGTTGACAGGTGGAAAGCTTGATGATATTACTGTAATTGTTGGTCAGGTTATAAATTCATGA

Protein sequence

>Msa1226600

MAISILRAVMVSNSHCQSQPHIHNISSIDENAKRRKRVVFSSHSSELNPVIRSSEVSFSVGTCLIPHPKKVEKGGEDAFFVSNYNGGVIAVADGVSGWAEEDVDPSLFPRELMANAYNFVQDEEVNNDPQILIRKAHAATFSTGSATVIIAMLEKNGNLKIANVGDCGLRVIRNGQVIFSTSPQEHYFDCPYQLSSERVGQTYLDAMVSNVELMEGDTIVMGSDGLFDNGFDHEIALTVANKDVSEAAKALANLANSHAMDSNFDSPYSLEARAKGFEAPWWKKVLGMKLTGGKLDDITVIVGQVINS*