AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0707780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0707780 MtrunA17_Chr8g0390401 96.154 104 4 0 57 160 586 689 5.13e-69 221
Msa0707780 MtrunA17_Chr8g0357041 43.448 145 70 4 26 162 370 510 3.02e-37 134
Msa0707780 MtrunA17_Chr2g0331251 39.735 151 79 3 12 152 410 558 2.58e-32 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0707780 AT4G21900.1 62.921 89 33 0 57 145 485 573 4.19e-35 128
Msa0707780 AT2G16650.2 50.442 113 54 1 38 148 306 418 4.34e-35 127
Msa0707780 AT2G16650.1 50.442 113 54 1 38 148 405 517 8.22e-35 127
Msa0707780 AT2G32230.2 58.696 92 37 1 57 147 479 570 8.88e-34 125
Msa0707780 AT2G32230.1 58.696 92 37 1 57 147 479 570 8.88e-34 125

Find 164 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATCATTTGTTTCAACTTC+TGG 0.179107 4_4:+81241682 Msa0707780:CDS
AGCTAAATTGCGGGTTTCTT+TGG 0.206390 4_4:+81239756 Msa0707780:five_prime_UTR
TCCTTGTTCTGTTGTTATTC+AGG 0.221050 4_4:+81241990 Msa0707780:CDS
GTCTCATCTAATAATTTAAA+TGG 0.232728 4_4:+81239961 Msa0707780:five_prime_UTR
TTCTAAAAGAGGGGATTTAA+AGG 0.242554 4_4:+81239786 Msa0707780:five_prime_UTR
TTCATCTCATACTGACAAAA+AGG 0.243237 4_4:+81239606 Msa0707780:five_prime_UTR
GTGTATCACACGTGCTAAAT+TGG 0.253319 4_4:+81242241 Msa0707780:CDS
GCTTCCAACTCAGGTTCTTC+AGG 0.277661 4_4:-81240408 None:intergenic
TGTTTGTGTTGCAGAGATTA+AGG 0.283516 4_4:-81239245 None:intergenic
GATGAGAAACCTCTGCAAAA+TGG 0.286182 4_4:+81242693 Msa0707780:intron
ACTCAATGCGCTGATTGATA+TGG 0.286592 4_4:-81243160 None:intergenic
TTATCTACTTACTGTAATAA+TGG 0.290091 4_4:+81240330 Msa0707780:five_prime_UTR
CTTTGTTCTTCTGCAGCTAT+TGG 0.296874 4_4:+81239886 Msa0707780:five_prime_UTR
TTTCTCAACAACCGTGTAAC+TGG 0.324431 4_4:-81239662 None:intergenic
GGATATTGCTGAATCAAATA+AGG 0.329065 4_4:-81239818 None:intergenic
GATCATTTGTTTCAACTTCT+GGG 0.330258 4_4:+81241683 Msa0707780:CDS
TCATTAAGTTCTGCTTCAAT+TGG 0.354266 4_4:-81242197 None:intergenic
ATGAGAAACCTCTGCAAAAT+GGG 0.361773 4_4:+81242694 Msa0707780:three_prime_UTR
TCAACCAATGCCTTGTTGAT+TGG 0.362207 4_4:-81241439 None:intergenic
AATCCTAGGTTAAGGTCTTA+TGG 0.368995 4_4:+81240300 Msa0707780:five_prime_UTR
GCAAAATTCTCAGTTTCAAC+AGG 0.370160 4_4:-81240750 None:intergenic
ACATGTAGATTAGATTAGAT+TGG 0.379029 4_4:+81239305 Msa0707780:five_prime_UTR
CTGATGCCTTTCTTTCCACT+TGG 0.380390 4_4:-81241720 None:intergenic
ATGGGATAAAGGATTGATAA+TGG 0.380414 4_4:+81240587 Msa0707780:five_prime_UTR
CTGCTGATTTGATTGTTGAT+TGG 0.381697 4_4:+81240526 Msa0707780:five_prime_UTR
CAGAAATGGATTGAATACTA+TGG 0.384397 4_4:+81241144 Msa0707780:intron
GGATAAGAGGAATGGGATAA+TGG 0.395428 4_4:+81240098 Msa0707780:five_prime_UTR
TAGGGATAAATCCTAGGTTA+AGG 0.401557 4_4:+81240292 Msa0707780:five_prime_UTR
ATGATCTCTCATCTCATCAT+TGG 0.401872 4_4:-81241666 None:intergenic
GATATGGAATCTTCATACTA+TGG 0.403467 4_4:+81242336 Msa0707780:three_prime_UTR
TCAACAAGGCATTGGTTGAT+AGG 0.403849 4_4:+81241443 Msa0707780:CDS
CCTGCGATATGAAACTAAAC+TGG 0.406689 4_4:-81242972 None:intergenic
ACCTCTGCAAAATGGGGAAC+AGG 0.408493 4_4:+81242701 Msa0707780:three_prime_UTR
GGACAGGTTGGTTGGGTAAA+GGG 0.416147 4_4:+81240643 Msa0707780:five_prime_UTR
CTGTCCTAGTTTAACACCTT+GGG 0.417066 4_4:-81239839 None:intergenic
ATAAGTGGAAACTTCTTTGA+AGG 0.417993 4_4:-81241373 None:intergenic
CGTGAAGAACATTGGATTGA+AGG 0.423729 4_4:-81239511 None:intergenic
GATACAAAAGAACAGTATAA+TGG 0.430667 4_4:-81239864 None:intergenic
CTTGGGTTGAAATTGATTGA+AGG 0.444987 4_4:-81239481 None:intergenic
GCTAAATTGGACATGGTTAG+TGG 0.446480 4_4:+81242254 Msa0707780:CDS
CATGTAGATTAGATTAGATT+GGG 0.448936 4_4:+81239306 Msa0707780:five_prime_UTR
TTGGTTGTTGTGTCAAGTGG+GGG 0.449906 4_4:-81239538 None:intergenic
TGGCATGGGACAGGTTGGTT+GGG 0.450920 4_4:+81240636 Msa0707780:five_prime_UTR
CAAACCAGTGTAGGAAATGA+TGG 0.453031 4_4:+81240681 Msa0707780:five_prime_UTR
TACATTTGCCTTATCGTATG+TGG 0.453458 4_4:-81239347 None:intergenic
AGTTTCTTACTTGAAATGTC+TGG 0.453497 4_4:-81240821 None:intergenic
TGATGCCTTTCTTTCCACTT+GGG 0.455973 4_4:-81241719 None:intergenic
GGGACAGGTTGGTTGGGTAA+AGG 0.459252 4_4:+81240642 Msa0707780:five_prime_UTR
GGCGTATCAAAGGAGACAAA+AGG 0.463022 4_4:+81241410 Msa0707780:CDS
TGAACTTCCCTTGGCTGTAA+AGG 0.473503 4_4:-81241203 None:intergenic
CCAGTTTAGTTTCATATCGC+AGG 0.475696 4_4:+81242972 Msa0707780:three_prime_UTR
TGTTCTTCTGCAGCTATTGG+CGG 0.477046 4_4:+81239889 Msa0707780:five_prime_UTR
TGGATGGCATGAACTTCCCT+TGG 0.478230 4_4:-81241212 None:intergenic
TCTAAAAGAGGGGATTTAAA+GGG 0.478557 4_4:+81239787 Msa0707780:five_prime_UTR
GTTGGTTGGGTAAAGGGAAA+TGG 0.480815 4_4:+81240649 Msa0707780:five_prime_UTR
GTTGAAATTGATTGAAGGGA+AGG 0.480985 4_4:-81239476 None:intergenic
ATTGACATCTGTGGCTAGAA+TGG 0.481180 4_4:+81240212 Msa0707780:five_prime_UTR
GCTGTCCTAGTTTAACACCT+TGG 0.481887 4_4:-81239840 None:intergenic
CAACTCTGCAGCCTCAAGTT+CGG 0.482797 4_4:-81242848 None:intergenic
ATACTCTATGCAACACCTAC+AGG 0.482929 4_4:+81241481 Msa0707780:CDS
TTTAGCAGCCACATACGATA+AGG 0.482995 4_4:+81239339 Msa0707780:five_prime_UTR
TTTGGTTGTTGTGTCAAGTG+GGG 0.485263 4_4:-81239539 None:intergenic
ATGATAAGGATAAGAGGAAT+GGG 0.485314 4_4:+81240091 Msa0707780:five_prime_UTR
AATGATAAGGATAAGAGGAA+TGG 0.485631 4_4:+81240090 Msa0707780:five_prime_UTR
GCATCTATCACTGCTTCAAA+AGG 0.486413 4_4:-81241168 None:intergenic
CGATTCGGTTTCTCTGATGC+TGG 0.490885 4_4:+81241946 Msa0707780:CDS
AAACCCGCAATTTAGCTTGT+GGG 0.490965 4_4:-81239750 None:intergenic
CTACAGGATCAAATGATGAT+TGG 0.494498 4_4:+81241497 Msa0707780:CDS
CTATGATGCAAAACAATAAG+TGG 0.496606 4_4:-81241388 None:intergenic
GAGGCTGCAGAGTTGATTAG+TGG 0.497760 4_4:+81242856 Msa0707780:three_prime_UTR
CTTCCAACTCAGGTTCTTCA+GGG 0.498182 4_4:-81240407 None:intergenic
AGATGAAGAAGAAGGAGAAG+AGG 0.499099 4_4:-81239590 None:intergenic
GAGGATGGCATGGGACAGGT+TGG 0.499348 4_4:+81240631 Msa0707780:five_prime_UTR
CAGTTGCAGTTGCAGAGTGA+GGG 0.500105 4_4:-81239383 None:intergenic
GGTGGAGGATGGCATGGGAC+AGG 0.500466 4_4:+81240627 Msa0707780:five_prime_UTR
ACATGAATGATAAGGATAAG+AGG 0.501905 4_4:+81240085 Msa0707780:five_prime_UTR
CTCAAGAGTGCTTCCAACTC+AGG 0.503977 4_4:-81240417 None:intergenic
TGGATCAGTGTTCTAAAAGA+GGG 0.506420 4_4:+81239776 Msa0707780:five_prime_UTR
TTTCTCATTACTTATAGCAA+TGG 0.507951 4_4:-81240787 None:intergenic
ATGGCATGGGACAGGTTGGT+TGG 0.508670 4_4:+81240635 Msa0707780:five_prime_UTR
AGCAAAATCGCTTTAAGAGT+GGG 0.508909 4_4:+81240555 Msa0707780:five_prime_UTR
TAAATGTTGTGGAGTGCAAT+TGG 0.509532 4_4:+81240710 Msa0707780:five_prime_UTR
TTGGATCAGTGTTCTAAAAG+AGG 0.511467 4_4:+81239775 Msa0707780:five_prime_UTR
TTGGGTTGAAATTGATTGAA+GGG 0.515957 4_4:-81239480 None:intergenic
TCTTCCCCAAGTGGAAAGAA+AGG 0.516386 4_4:+81241714 Msa0707780:CDS
TGAGAATATGTGTATGAGTA+AGG 0.518766 4_4:+81240170 Msa0707780:five_prime_UTR
TCAGTATGAGATGAAGAAGA+AGG 0.520949 4_4:-81239598 None:intergenic
ATTCAGTAACTTGCCTTGGA+TGG 0.524428 4_4:-81241228 None:intergenic
ATACGATAAGGCAAATGTAA+TGG 0.525285 4_4:+81239351 Msa0707780:five_prime_UTR
GTGATAGATGCTGCAAATGT+AGG 0.526795 4_4:+81241180 Msa0707780:five_prime_UTR
CATTCCATCATTTCCTACAC+TGG 0.529681 4_4:-81240685 None:intergenic
TATGAGTTGGCTGTATATCA+TGG 0.534443 4_4:-81242359 None:intergenic
GCGTATCAAAGGAGACAAAA+GGG 0.537954 4_4:+81241411 Msa0707780:CDS
ATGATGAAGCAGAAAGAAGA+TGG 0.537993 4_4:+81242216 Msa0707780:CDS
AATAACGGTGGAGGATGGCA+TGG 0.538779 4_4:+81240621 Msa0707780:five_prime_UTR
GATGCCTTTCTTTCCACTTG+GGG 0.541694 4_4:-81241718 None:intergenic
GAAACCCGCAATTTAGCTTG+TGG 0.542236 4_4:-81239751 None:intergenic
TGGTTGTTGTGTCAAGTGGG+GGG 0.543510 4_4:-81239537 None:intergenic
TGCAAAATAACGGTGGAGGA+TGG 0.543752 4_4:+81240616 Msa0707780:five_prime_UTR
CAAGTGGAAAGAAAGGCATC+AGG 0.544258 4_4:+81241721 Msa0707780:CDS
AAGAAATATGCACTACAAAG+AGG 0.553943 4_4:+81240135 Msa0707780:five_prime_UTR
GAGCAAAATCGCTTTAAGAG+TGG 0.555862 4_4:+81240554 Msa0707780:five_prime_UTR
GTATCTAGTTCACATTTACA+AGG 0.556072 4_4:+81242300 Msa0707780:exon
TGATGTTGAAAAGCACATGT+TGG 0.556500 4_4:+81240371 Msa0707780:five_prime_UTR
ATGGAAGCAATGCAAAATAA+CGG 0.556927 4_4:+81240606 Msa0707780:five_prime_UTR
GAATGGGATAATGGTGAGCG+AGG 0.558576 4_4:+81240107 Msa0707780:five_prime_UTR
AACCCGCAATTTAGCTTGTG+GGG 0.559927 4_4:-81239749 None:intergenic
TTGCATCATAGGCGTATCAA+AGG 0.560624 4_4:+81241400 Msa0707780:CDS
TGTTCTTTGTTTGTGAATGT+CGG 0.561364 4_4:+81243278 Msa0707780:three_prime_UTR
CGACCTGCGAAAAGTGGAAG+TGG 0.563418 4_4:+81239916 Msa0707780:five_prime_UTR
TAAGTGGAAACTTCTTTGAA+GGG 0.565681 4_4:-81241372 None:intergenic
ATATCCCAAGGTGTTAAACT+AGG 0.565875 4_4:+81239835 Msa0707780:five_prime_UTR
AGTTGCAGTTGCAGAGTGAG+GGG 0.566363 4_4:-81239382 None:intergenic
GGTCTTCGACCTGCGAAAAG+TGG 0.570123 4_4:+81239910 Msa0707780:five_prime_UTR
TAAACCAATCAACAAGGCAT+TGG 0.570466 4_4:+81241435 Msa0707780:CDS
CAGTTTAGTTTCATATCGCA+GGG 0.570836 4_4:+81242973 Msa0707780:three_prime_UTR
AGGGAGAAATACAAAGGCTA+AGG 0.571612 4_4:+81242992 Msa0707780:three_prime_UTR
GATGGAATGTGTAAATGTTG+TGG 0.572152 4_4:+81240699 Msa0707780:five_prime_UTR
TACTAGAACTTTGAATGCAC+AGG 0.573536 4_4:+81239939 Msa0707780:five_prime_UTR
CAAGTTCTTCAAACCAGTGT+AGG 0.574735 4_4:+81240672 Msa0707780:five_prime_UTR
TACTAGAAAAGAGTCTGCAA+AGG 0.582764 4_4:+81242734 Msa0707780:three_prime_UTR
ACCCGCAATTTAGCTTGTGG+GGG 0.583550 4_4:-81239748 None:intergenic
TGATAGTGACATGAATGATA+AGG 0.583884 4_4:+81240077 Msa0707780:five_prime_UTR
TTTGATTCAGCAATATCCCA+AGG 0.585577 4_4:+81239823 Msa0707780:five_prime_UTR
TTACAGTAAGTAGATAAAGC+AGG 0.586608 4_4:-81240324 None:intergenic
ATGTAGGCCTTTACAGCCAA+GGG 0.587024 4_4:+81241196 Msa0707780:five_prime_UTR
AGGGAAGTTCATGCCATCCA+AGG 0.592248 4_4:+81241215 Msa0707780:five_prime_UTR
AATGTAGGCCTTTACAGCCA+AGG 0.593324 4_4:+81241195 Msa0707780:five_prime_UTR
CCCGCAATTTAGCTTGTGGG+GGG 0.593676 4_4:-81239747 None:intergenic
GTCACCATCACTCATTGCCA+TGG 0.598569 4_4:-81240235 None:intergenic
ATCTGTGGCTAGAATGGCCA+TGG 0.598920 4_4:+81240218 Msa0707780:five_prime_UTR
ATAACGGTGGAGGATGGCAT+GGG 0.600626 4_4:+81240622 Msa0707780:five_prime_UTR
CACACGTGCTAAATTGGACA+TGG 0.604143 4_4:+81242247 Msa0707780:CDS
AGGAATCAGAAGAAGGCCAC+TGG 0.604583 4_4:+81242168 Msa0707780:intron
TGGTTGCAGGAATCAGAAGA+AGG 0.604739 4_4:+81242161 Msa0707780:intron
GCAGTTGCAGTTGCAGAGTG+AGG 0.604826 4_4:-81239384 None:intergenic
CAATCATCATTTGATCCTGT+AGG 0.609726 4_4:-81241496 None:intergenic
GCAATGCAAAATAACGGTGG+AGG 0.613704 4_4:+81240612 Msa0707780:five_prime_UTR
GGCAATGAGTGATGGTGACA+AGG 0.615969 4_4:+81240239 Msa0707780:five_prime_UTR
GGATCAGTGTTCTAAAAGAG+GGG 0.616326 4_4:+81239777 Msa0707780:five_prime_UTR
TTGAGAGTAAGCATAAGAGC+TGG 0.616424 4_4:+81240435 Msa0707780:five_prime_UTR
GACTCTTCAACAACATACAA+AGG 0.616484 4_4:+81242278 Msa0707780:CDS
TGAGAAACCTCTGCAAAATG+GGG 0.619135 4_4:+81242695 Msa0707780:three_prime_UTR
AACAAAGAACATTTAAAACA+TGG 0.620277 4_4:-81243266 None:intergenic
ACCTGAATAACAACAGAACA+AGG 0.621468 4_4:-81241991 None:intergenic
ACAAGGCATTGGTTGATAGG+TGG 0.623654 4_4:+81241446 Msa0707780:CDS
GTACCCTGAAGAACCTGAGT+TGG 0.627372 4_4:+81240404 Msa0707780:five_prime_UTR
TAACAGCAGTACCAGTTACA+CGG 0.628393 4_4:+81239651 Msa0707780:five_prime_UTR
TTCTTAGTTTATGCAACACA+TGG 0.628656 4_4:-81240476 None:intergenic
GAAATGACTTCTTCCCCAAG+TGG 0.634783 4_4:+81241705 Msa0707780:CDS
CTCGTTATTATCCGAACTTG+AGG 0.634891 4_4:+81242837 Msa0707780:three_prime_UTR
GGACCATAAGACCTTAACCT+AGG 0.639415 4_4:-81240303 None:intergenic
GAAAAGCACATGTTGGAACA+TGG 0.648794 4_4:+81240378 Msa0707780:five_prime_UTR
TATCGCAGGGAGAAATACAA+AGG 0.650537 4_4:+81242986 Msa0707780:three_prime_UTR
ATGGCCATGGCAATGAGTGA+TGG 0.659856 4_4:+81240231 Msa0707780:five_prime_UTR
CTTCAATTGGAATATGCCAG+TGG 0.661796 4_4:-81242184 None:intergenic
CCGCAATTTAGCTTGTGGGG+GGG 0.667914 4_4:-81239746 None:intergenic
ATAACAACAGAACAAGGAGG+CGG 0.677532 4_4:-81241985 None:intergenic
ATAAACTAAGAAGCAGTGTG+AGG 0.692717 4_4:+81240487 Msa0707780:five_prime_UTR
GAAGCAATGCAAAATAACGG+TGG 0.696359 4_4:+81240609 Msa0707780:five_prime_UTR
TGAAGCAGCATTGACATCTG+TGG 0.699676 4_4:+81240203 Msa0707780:five_prime_UTR
AAGGGATAAACCAATCAACA+AGG 0.704437 4_4:+81241429 Msa0707780:CDS
ACTTGTGTAAGTTGTAACAA+CGG 0.744825 4_4:-81239269 None:intergenic
TGAATAACAACAGAACAAGG+AGG 0.769709 4_4:-81241988 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTTCTTATTATAATGT+AGG + chr4_4:81241766-81241785 Msa0707780:intron 10.0%
!! GAAGAAAAAAAATATATATA+GGG - chr4_4:81241913-81241932 None:intergenic 10.0%
!!! TTAAACAAATGAAGATTTTA+GGG + chr4_4:81240274-81240293 Msa0707780:five_prime_UTR 15.0%
!! TGTATATATTTGATGAAAAA+AGG + chr4_4:81241790-81241809 Msa0707780:intron 15.0%
!! GGAAGAAAAAAAATATATAT+AGG - chr4_4:81241914-81241933 None:intergenic 15.0%
!!! TTTTTTTTCTTCCAAATTTT+AGG + chr4_4:81241921-81241940 Msa0707780:intron 15.0%
!!! AATTTTTTTAAACAGTACTA+TGG - chr4_4:81242037-81242056 None:intergenic 15.0%
!! ATAGTACTGTTTAAAAAAAT+TGG + chr4_4:81242036-81242055 Msa0707780:intron 15.0%
!! TAGTACTGTTTAAAAAAATT+GGG + chr4_4:81242037-81242056 Msa0707780:intron 15.0%
!!! TATTTTTGAGATTTATCTTT+TGG - chr4_4:81242392-81242411 None:intergenic 15.0%
!! GATAAATCTCAAAAATAAAA+TGG + chr4_4:81242395-81242414 Msa0707780:three_prime_UTR 15.0%
!! TTAAAAGTTAAGAGAATAAA+TGG - chr4_4:81242489-81242508 None:intergenic 15.0%
!!! TTTTGTTAAAATTTTAACAG+TGG + chr4_4:81243134-81243153 Msa0707780:three_prime_UTR 15.0%
!! GTCTCATCTAATAATTTAAA+TGG + chr4_4:81239961-81239980 Msa0707780:five_prime_UTR 20.0%
!!! GTTAAACAAATGAAGATTTT+AGG + chr4_4:81240273-81240292 Msa0707780:five_prime_UTR 20.0%
!! TTATCTACTTACTGTAATAA+TGG + chr4_4:81240330-81240349 Msa0707780:five_prime_UTR 20.0%
!!! AAGGTTTAATTTTTGTTCTT+TGG + chr4_4:81241809-81241828 Msa0707780:intron 20.0%
!! TCTAAATTGTAATCAAAGAA+AGG - chr4_4:81241870-81241889 None:intergenic 20.0%
!! AAAATATAACATGACAATTG+TGG + chr4_4:81242141-81242160 Msa0707780:intron 20.0%
!! TCTTAAAATCTATACTTTAG+TGG - chr4_4:81242551-81242570 None:intergenic 20.0%
!! AGAAAGAGAAAAAAAAAACA+TGG - chr4_4:81243231-81243250 None:intergenic 20.0%
!!! AACAAAGAACATTTAAAACA+TGG - chr4_4:81243269-81243288 None:intergenic 20.0%
!!! GAGATTAAGGATTTTAATAG+AGG - chr4_4:81239235-81239254 None:intergenic 25.0%
! ACATGTAGATTAGATTAGAT+TGG + chr4_4:81239305-81239324 Msa0707780:five_prime_UTR 25.0%
! CATGTAGATTAGATTAGATT+GGG + chr4_4:81239306-81239325 Msa0707780:five_prime_UTR 25.0%
! GATACAAAAGAACAGTATAA+TGG - chr4_4:81239867-81239886 None:intergenic 25.0%
! TTTCTCATTACTTATAGCAA+TGG - chr4_4:81240790-81240809 None:intergenic 25.0%
! AGGTGATTAATAAGTATATC+AGG - chr4_4:81240995-81241014 None:intergenic 25.0%
! GAAATTATGAATTGCAGAAA+TGG + chr4_4:81241130-81241149 Msa0707780:intron 25.0%
! AATGCAAGGTAAAAAGAAAA+AGG - chr4_4:81241266-81241285 None:intergenic 25.0%
! AATATATATAGGGATTTCGA+TGG - chr4_4:81241903-81241922 None:intergenic 25.0%
!!! ACATTTACAAGGTTACTTTT+AGG + chr4_4:81242311-81242330 Msa0707780:three_prime_UTR 25.0%
!!! TTTTGGTTAGTAATATGAGT+TGG - chr4_4:81242375-81242394 None:intergenic 25.0%
! TTAGTGGCATATATTATGAA+CGG - chr4_4:81242535-81242554 None:intergenic 25.0%
!! TTTTATGTTGTCACAATTGA+TGG + chr4_4:81242610-81242629 Msa0707780:intron 25.0%
! TAATCAAAGGAAAAGAAAGT+GGG - chr4_4:81242673-81242692 None:intergenic 25.0%
! GTCAATCACAAAAAAATGAA+CGG + chr4_4:81242777-81242796 Msa0707780:three_prime_UTR 25.0%
ACTTGTGTAAGTTGTAACAA+CGG - chr4_4:81239272-81239291 None:intergenic 30.0%
ATACGATAAGGCAAATGTAA+TGG + chr4_4:81239351-81239370 Msa0707780:five_prime_UTR 30.0%
! CTTTTTGCACTCTCAAATTA+TGG + chr4_4:81239445-81239464 Msa0707780:five_prime_UTR 30.0%
!! TTGGGTTGAAATTGATTGAA+GGG - chr4_4:81239483-81239502 None:intergenic 30.0%
TTCATCTCATACTGACAAAA+AGG + chr4_4:81239606-81239625 Msa0707780:five_prime_UTR 30.0%
!!! GTTAACTGATTTTGATTCCA+AGG - chr4_4:81239635-81239654 None:intergenic 30.0%
! TTCTAAAAGAGGGGATTTAA+AGG + chr4_4:81239786-81239805 Msa0707780:five_prime_UTR 30.0%
TCTAAAAGAGGGGATTTAAA+GGG + chr4_4:81239787-81239806 Msa0707780:five_prime_UTR 30.0%
GGATATTGCTGAATCAAATA+AGG - chr4_4:81239821-81239840 None:intergenic 30.0%
! TGATAGTGACATGAATGATA+AGG + chr4_4:81240077-81240096 Msa0707780:five_prime_UTR 30.0%
ACATGAATGATAAGGATAAG+AGG + chr4_4:81240085-81240104 Msa0707780:five_prime_UTR 30.0%
AATGATAAGGATAAGAGGAA+TGG + chr4_4:81240090-81240109 Msa0707780:five_prime_UTR 30.0%
ATGATAAGGATAAGAGGAAT+GGG + chr4_4:81240091-81240110 Msa0707780:five_prime_UTR 30.0%
AAGAAATATGCACTACAAAG+AGG + chr4_4:81240135-81240154 Msa0707780:five_prime_UTR 30.0%
TGAGAATATGTGTATGAGTA+AGG + chr4_4:81240170-81240189 Msa0707780:five_prime_UTR 30.0%
!! AGATTTTAGGGATAAATCCT+AGG + chr4_4:81240286-81240305 Msa0707780:five_prime_UTR 30.0%
TTACAGTAAGTAGATAAAGC+AGG - chr4_4:81240327-81240346 None:intergenic 30.0%
TTCTTAGTTTATGCAACACA+TGG - chr4_4:81240479-81240498 None:intergenic 30.0%
TAAGAGTGGGAAAAAGAAAA+TGG + chr4_4:81240568-81240587 Msa0707780:five_prime_UTR 30.0%
AAGAGTGGGAAAAAGAAAAT+GGG + chr4_4:81240569-81240588 Msa0707780:five_prime_UTR 30.0%
GGAAAAAGAAAATGGGATAA+AGG + chr4_4:81240576-81240595 Msa0707780:five_prime_UTR 30.0%
ATGGGATAAAGGATTGATAA+TGG + chr4_4:81240587-81240606 Msa0707780:five_prime_UTR 30.0%
ATGGAAGCAATGCAAAATAA+CGG + chr4_4:81240606-81240625 Msa0707780:five_prime_UTR 30.0%
AGTTTCTTACTTGAAATGTC+TGG - chr4_4:81240824-81240843 None:intergenic 30.0%
GGTTATTTATGTTTAGTAGC+TGG + chr4_4:81240946-81240965 Msa0707780:intron 30.0%
! GTTATTTCGACAACAGAAAT+TGG - chr4_4:81241062-81241081 None:intergenic 30.0%
!! CAGAAATGGATTGAATACTA+TGG + chr4_4:81241144-81241163 Msa0707780:intron 30.0%
ATCAATGACTGCAATTAGAA+CGG - chr4_4:81241289-81241308 None:intergenic 30.0%
TCTAAAAGTTTCACATCAGA+TGG - chr4_4:81241318-81241337 None:intergenic 30.0%
TAAGTGGAAACTTCTTTGAA+GGG - chr4_4:81241375-81241394 None:intergenic 30.0%
ATAAGTGGAAACTTCTTTGA+AGG - chr4_4:81241376-81241395 None:intergenic 30.0%
CTATGATGCAAAACAATAAG+TGG - chr4_4:81241391-81241410 None:intergenic 30.0%
!! CACTTATTGTTTTGCATCAT+AGG + chr4_4:81241389-81241408 Msa0707780:CDS 30.0%
GATGATTGGTATGAACAAAA+TGG + chr4_4:81241511-81241530 Msa0707780:intron 30.0%
CATTTACAAACATGTGTTTC+AGG + chr4_4:81241600-81241619 Msa0707780:intron 30.0%
AGATCATTTGTTTCAACTTC+TGG + chr4_4:81241682-81241701 Msa0707780:CDS 30.0%
GATCATTTGTTTCAACTTCT+GGG + chr4_4:81241683-81241702 Msa0707780:CDS 30.0%
!! TCCAAATTTTAGGTACGATT+CGG + chr4_4:81241931-81241950 Msa0707780:intron 30.0%
TCATTAAGTTCTGCTTCAAT+TGG - chr4_4:81242200-81242219 None:intergenic 30.0%
! GTATCTAGTTCACATTTACA+AGG + chr4_4:81242300-81242319 Msa0707780:exon 30.0%
GATATGGAATCTTCATACTA+TGG + chr4_4:81242336-81242355 Msa0707780:three_prime_UTR 30.0%
CTAATCAAAGGAAAAGAAAG+TGG - chr4_4:81242674-81242693 None:intergenic 30.0%
! TGATTTTTGTACGATTCTTG+AGG - chr4_4:81242807-81242826 None:intergenic 30.0%
! TGTTCTTTGTTTGTGAATGT+CGG + chr4_4:81243278-81243297 Msa0707780:three_prime_UTR 30.0%
TGTTTGTGTTGCAGAGATTA+AGG - chr4_4:81239248-81239267 None:intergenic 35.0%
TACATTTGCCTTATCGTATG+TGG - chr4_4:81239350-81239369 None:intergenic 35.0%
! TTTGAGAGTGCAAAAAGCTT+GGG - chr4_4:81239442-81239461 None:intergenic 35.0%
! ATTTGAGAGTGCAAAAAGCT+TGG - chr4_4:81239443-81239462 None:intergenic 35.0%
GTTGAAATTGATTGAAGGGA+AGG - chr4_4:81239479-81239498 None:intergenic 35.0%
!! CTTGGGTTGAAATTGATTGA+AGG - chr4_4:81239484-81239503 None:intergenic 35.0%
!! GGATTGAAGGTTGTTTTCTT+GGG - chr4_4:81239501-81239520 None:intergenic 35.0%
!! TGGATTGAAGGTTGTTTTCT+TGG - chr4_4:81239502-81239521 None:intergenic 35.0%
!! TTTTGGTTGTTGTGTCAAGT+GGG - chr4_4:81239543-81239562 None:intergenic 35.0%
!!! TTTTTGGTTGTTGTGTCAAG+TGG - chr4_4:81239544-81239563 None:intergenic 35.0%
TGACACAACAACCAAAAACT+CGG + chr4_4:81239546-81239565 Msa0707780:five_prime_UTR 35.0%
! AAACCTTCTTACCGAGTTTT+TGG - chr4_4:81239560-81239579 None:intergenic 35.0%
TCAGTATGAGATGAAGAAGA+AGG - chr4_4:81239601-81239620 None:intergenic 35.0%
TACTGACAAAAAGGTTTCCT+TGG + chr4_4:81239615-81239634 Msa0707780:five_prime_UTR 35.0%
!!! TCTCGAAGGCATTTTTATTC+TGG - chr4_4:81239705-81239724 None:intergenic 35.0%
AATCTTCTTCTTCTTCTCGA+AGG - chr4_4:81239719-81239738 None:intergenic 35.0%
CGAGAAGAAGAAGAAGATTA+AGG + chr4_4:81239720-81239739 Msa0707780:five_prime_UTR 35.0%
!! TTGGATCAGTGTTCTAAAAG+AGG + chr4_4:81239775-81239794 Msa0707780:five_prime_UTR 35.0%
!! TGGATCAGTGTTCTAAAAGA+GGG + chr4_4:81239776-81239795 Msa0707780:five_prime_UTR 35.0%
TTTGATTCAGCAATATCCCA+AGG + chr4_4:81239823-81239842 Msa0707780:five_prime_UTR 35.0%
! ATATCCCAAGGTGTTAAACT+AGG + chr4_4:81239835-81239854 Msa0707780:five_prime_UTR 35.0%
TACTAGAACTTTGAATGCAC+AGG + chr4_4:81239939-81239958 Msa0707780:five_prime_UTR 35.0%
TAGGGATAAATCCTAGGTTA+AGG + chr4_4:81240292-81240311 Msa0707780:five_prime_UTR 35.0%
AATCCTAGGTTAAGGTCTTA+TGG + chr4_4:81240300-81240319 Msa0707780:five_prime_UTR 35.0%
! TGATGTTGAAAAGCACATGT+TGG + chr4_4:81240371-81240390 Msa0707780:five_prime_UTR 35.0%
ATAAACTAAGAAGCAGTGTG+AGG + chr4_4:81240487-81240506 Msa0707780:five_prime_UTR 35.0%
!! CTGCTGATTTGATTGTTGAT+TGG + chr4_4:81240526-81240545 Msa0707780:five_prime_UTR 35.0%
!! AGCAAAATCGCTTTAAGAGT+GGG + chr4_4:81240555-81240574 Msa0707780:five_prime_UTR 35.0%
GATGGAATGTGTAAATGTTG+TGG + chr4_4:81240699-81240718 Msa0707780:five_prime_UTR 35.0%
TAAATGTTGTGGAGTGCAAT+TGG + chr4_4:81240710-81240729 Msa0707780:five_prime_UTR 35.0%
GCAAAATTCTCAGTTTCAAC+AGG - chr4_4:81240753-81240772 None:intergenic 35.0%
!!! TTCGCGAGTCTTTTTTTAAG+TGG + chr4_4:81240903-81240922 Msa0707780:intron 35.0%
GTTAGCACAGTTCAAATAGA+TGG + chr4_4:81240925-81240944 Msa0707780:intron 35.0%
GTGATTAACGCTGTTGAAAT+AGG - chr4_4:81241015-81241034 None:intergenic 35.0%
!! ACTTCTTTGAAGGGAGTTTT+TGG - chr4_4:81241366-81241385 None:intergenic 35.0%
AAGGGATAAACCAATCAACA+AGG + chr4_4:81241429-81241448 Msa0707780:CDS 35.0%
TAAACCAATCAACAAGGCAT+TGG + chr4_4:81241435-81241454 Msa0707780:CDS 35.0%
CAATCATCATTTGATCCTGT+AGG - chr4_4:81241499-81241518 None:intergenic 35.0%
CTACAGGATCAAATGATGAT+TGG + chr4_4:81241497-81241516 Msa0707780:CDS 35.0%
ATGATCTCTCATCTCATCAT+TGG - chr4_4:81241669-81241688 None:intergenic 35.0%
ACCGAATCGTACCTAAAATT+TGG - chr4_4:81241935-81241954 None:intergenic 35.0%
TGAATAACAACAGAACAAGG+AGG - chr4_4:81241991-81242010 None:intergenic 35.0%
! TCCTTGTTCTGTTGTTATTC+AGG + chr4_4:81241990-81242009 Msa0707780:CDS 35.0%
ACCTGAATAACAACAGAACA+AGG - chr4_4:81241994-81242013 None:intergenic 35.0%
TTCAGGTAAGAAACATACAC+TGG + chr4_4:81242007-81242026 Msa0707780:intron 35.0%
ATGATGAAGCAGAAAGAAGA+TGG + chr4_4:81242216-81242235 Msa0707780:CDS 35.0%
GACTCTTCAACAACATACAA+AGG + chr4_4:81242278-81242297 Msa0707780:CDS 35.0%
!!! AGGTTACTTTTAGGACGATA+TGG + chr4_4:81242320-81242339 Msa0707780:three_prime_UTR 35.0%
! TATGAGTTGGCTGTATATCA+TGG - chr4_4:81242362-81242381 None:intergenic 35.0%
!! TCACAATTGATGGATTAGCT+TGG + chr4_4:81242620-81242639 Msa0707780:intron 35.0%
GAGGTTTCTCATCTAATCAA+AGG - chr4_4:81242686-81242705 None:intergenic 35.0%
ATGAGAAACCTCTGCAAAAT+GGG + chr4_4:81242694-81242713 Msa0707780:three_prime_UTR 35.0%
TACTAGAAAAGAGTCTGCAA+AGG + chr4_4:81242734-81242753 Msa0707780:three_prime_UTR 35.0%
! CAGTTTAGTTTCATATCGCA+GGG + chr4_4:81242973-81242992 Msa0707780:three_prime_UTR 35.0%
!! TTTTAATTGCTGCTTGCACA+TGG + chr4_4:81243047-81243066 Msa0707780:three_prime_UTR 35.0%
TTTAGCAGCCACATACGATA+AGG + chr4_4:81239339-81239358 Msa0707780:five_prime_UTR 40.0%
CGTGAAGAACATTGGATTGA+AGG - chr4_4:81239514-81239533 None:intergenic 40.0%
TTTGGTTGTTGTGTCAAGTG+GGG - chr4_4:81239542-81239561 None:intergenic 40.0%
CAACCAAAAACTCGGTAAGA+AGG + chr4_4:81239554-81239573 Msa0707780:five_prime_UTR 40.0%
! AGAAGGAGAAGAGGTTTTCT+TGG - chr4_4:81239584-81239603 None:intergenic 40.0%
AGATGAAGAAGAAGGAGAAG+AGG - chr4_4:81239593-81239612 None:intergenic 40.0%
TAACAGCAGTACCAGTTACA+CGG + chr4_4:81239651-81239670 Msa0707780:five_prime_UTR 40.0%
TTTCTCAACAACCGTGTAAC+TGG - chr4_4:81239665-81239684 None:intergenic 40.0%
!! AAACCCGCAATTTAGCTTGT+GGG - chr4_4:81239753-81239772 None:intergenic 40.0%
AGCTAAATTGCGGGTTTCTT+TGG + chr4_4:81239756-81239775 Msa0707780:five_prime_UTR 40.0%
!! GGATCAGTGTTCTAAAAGAG+GGG + chr4_4:81239777-81239796 Msa0707780:five_prime_UTR 40.0%
CTGTCCTAGTTTAACACCTT+GGG - chr4_4:81239842-81239861 None:intergenic 40.0%
CTTTGTTCTTCTGCAGCTAT+TGG + chr4_4:81239886-81239905 Msa0707780:five_prime_UTR 40.0%
GGATAAGAGGAATGGGATAA+TGG + chr4_4:81240098-81240117 Msa0707780:five_prime_UTR 40.0%
ATTGACATCTGTGGCTAGAA+TGG + chr4_4:81240212-81240231 Msa0707780:five_prime_UTR 40.0%
! GAAAAGCACATGTTGGAACA+TGG + chr4_4:81240378-81240397 Msa0707780:five_prime_UTR 40.0%
TTGAGAGTAAGCATAAGAGC+TGG + chr4_4:81240435-81240454 Msa0707780:five_prime_UTR 40.0%
!! GAGCAAAATCGCTTTAAGAG+TGG + chr4_4:81240554-81240573 Msa0707780:five_prime_UTR 40.0%
GAAGCAATGCAAAATAACGG+TGG + chr4_4:81240609-81240628 Msa0707780:five_prime_UTR 40.0%
CAAGTTCTTCAAACCAGTGT+AGG + chr4_4:81240672-81240691 Msa0707780:five_prime_UTR 40.0%
CAAACCAGTGTAGGAAATGA+TGG + chr4_4:81240681-81240700 Msa0707780:five_prime_UTR 40.0%
CATTCCATCATTTCCTACAC+TGG - chr4_4:81240688-81240707 None:intergenic 40.0%
GCATCTATCACTGCTTCAAA+AGG - chr4_4:81241171-81241190 None:intergenic 40.0%
GTGATAGATGCTGCAAATGT+AGG + chr4_4:81241180-81241199 Msa0707780:five_prime_UTR 40.0%
! ATTCAGTAACTTGCCTTGGA+TGG - chr4_4:81241231-81241250 None:intergenic 40.0%
TGCAATTAGAACGGAATGCA+AGG - chr4_4:81241280-81241299 None:intergenic 40.0%
TTGCATCATAGGCGTATCAA+AGG + chr4_4:81241400-81241419 Msa0707780:CDS 40.0%
GCGTATCAAAGGAGACAAAA+GGG + chr4_4:81241411-81241430 Msa0707780:CDS 40.0%
! TCAACCAATGCCTTGTTGAT+TGG - chr4_4:81241442-81241461 None:intergenic 40.0%
!! TCAACAAGGCATTGGTTGAT+AGG + chr4_4:81241443-81241462 Msa0707780:CDS 40.0%
ATACTCTATGCAACACCTAC+AGG + chr4_4:81241481-81241500 Msa0707780:CDS 40.0%
! CAAACATGTGTTTCAGGTAC+TGG + chr4_4:81241606-81241625 Msa0707780:intron 40.0%
TGATGCCTTTCTTTCCACTT+GGG - chr4_4:81241722-81241741 None:intergenic 40.0%
ATAACAACAGAACAAGGAGG+CGG - chr4_4:81241988-81242007 None:intergenic 40.0%
AACATGACAATTGTGGTTGC+AGG + chr4_4:81242148-81242167 Msa0707780:intron 40.0%
CTTCAATTGGAATATGCCAG+TGG - chr4_4:81242187-81242206 None:intergenic 40.0%
GTGTATCACACGTGCTAAAT+TGG + chr4_4:81242241-81242260 Msa0707780:CDS 40.0%
GCTAAATTGGACATGGTTAG+TGG + chr4_4:81242254-81242273 Msa0707780:CDS 40.0%
AAAAGAAAGTGGGAAGTGAG+GGG - chr4_4:81242663-81242682 None:intergenic 40.0%
GAAAAGAAAGTGGGAAGTGA+GGG - chr4_4:81242664-81242683 None:intergenic 40.0%
GATGAGAAACCTCTGCAAAA+TGG + chr4_4:81242693-81242712 Msa0707780:intron 40.0%
TGAGAAACCTCTGCAAAATG+GGG + chr4_4:81242695-81242714 Msa0707780:three_prime_UTR 40.0%
CTCGTTATTATCCGAACTTG+AGG + chr4_4:81242837-81242856 Msa0707780:three_prime_UTR 40.0%
CCTGCGATATGAAACTAAAC+TGG - chr4_4:81242975-81242994 None:intergenic 40.0%
! CCAGTTTAGTTTCATATCGC+AGG + chr4_4:81242972-81242991 Msa0707780:three_prime_UTR 40.0%
TATCGCAGGGAGAAATACAA+AGG + chr4_4:81242986-81243005 Msa0707780:three_prime_UTR 40.0%
AGGGAGAAATACAAAGGCTA+AGG + chr4_4:81242992-81243011 Msa0707780:three_prime_UTR 40.0%
!! ACTCAATGCGCTGATTGATA+TGG - chr4_4:81243163-81243182 None:intergenic 40.0%
TTGGTTGTTGTGTCAAGTGG+GGG - chr4_4:81239541-81239560 None:intergenic 45.0%
!! AACCCGCAATTTAGCTTGTG+GGG - chr4_4:81239752-81239771 None:intergenic 45.0%
!! GAAACCCGCAATTTAGCTTG+TGG - chr4_4:81239754-81239773 None:intergenic 45.0%
GCTGTCCTAGTTTAACACCT+TGG - chr4_4:81239843-81239862 None:intergenic 45.0%
TGTTCTTCTGCAGCTATTGG+CGG + chr4_4:81239889-81239908 Msa0707780:five_prime_UTR 45.0%
!! TGAAGCAGCATTGACATCTG+TGG + chr4_4:81240203-81240222 Msa0707780:five_prime_UTR 45.0%
!! TGGTGACAAGGCTTTTGAGA+TGG + chr4_4:81240251-81240270 Msa0707780:five_prime_UTR 45.0%
GGACCATAAGACCTTAACCT+AGG - chr4_4:81240306-81240325 None:intergenic 45.0%
CTTCCAACTCAGGTTCTTCA+GGG - chr4_4:81240410-81240429 None:intergenic 45.0%
GCAATGCAAAATAACGGTGG+AGG + chr4_4:81240612-81240631 Msa0707780:five_prime_UTR 45.0%
TGCAAAATAACGGTGGAGGA+TGG + chr4_4:81240616-81240635 Msa0707780:five_prime_UTR 45.0%
GTTGGTTGGGTAAAGGGAAA+TGG + chr4_4:81240649-81240668 Msa0707780:five_prime_UTR 45.0%
AATGTAGGCCTTTACAGCCA+AGG + chr4_4:81241195-81241214 Msa0707780:five_prime_UTR 45.0%
ATGTAGGCCTTTACAGCCAA+GGG + chr4_4:81241196-81241215 Msa0707780:five_prime_UTR 45.0%
TGAACTTCCCTTGGCTGTAA+AGG - chr4_4:81241206-81241225 None:intergenic 45.0%
! CCACATTCAGTAACTTGCCT+TGG - chr4_4:81241235-81241254 None:intergenic 45.0%
CCAAGGCAAGTTACTGAATG+TGG + chr4_4:81241232-81241251 Msa0707780:intron 45.0%
GGCGTATCAAAGGAGACAAA+AGG + chr4_4:81241410-81241429 Msa0707780:CDS 45.0%
!! ACAAGGCATTGGTTGATAGG+TGG + chr4_4:81241446-81241465 Msa0707780:CDS 45.0%
GAAATGACTTCTTCCCCAAG+TGG + chr4_4:81241705-81241724 Msa0707780:CDS 45.0%
TCTTCCCCAAGTGGAAAGAA+AGG + chr4_4:81241714-81241733 Msa0707780:CDS 45.0%
GATGCCTTTCTTTCCACTTG+GGG - chr4_4:81241721-81241740 None:intergenic 45.0%
CTGATGCCTTTCTTTCCACT+TGG - chr4_4:81241723-81241742 None:intergenic 45.0%
!! CAAGTGGAAAGAAAGGCATC+AGG + chr4_4:81241721-81241740 Msa0707780:CDS 45.0%
!! GGAAAGAAAGGCATCAGGTA+TGG + chr4_4:81241726-81241745 Msa0707780:intron 45.0%
TGGTTGCAGGAATCAGAAGA+AGG + chr4_4:81242161-81242180 Msa0707780:intron 45.0%
CACACGTGCTAAATTGGACA+TGG + chr4_4:81242247-81242266 Msa0707780:CDS 45.0%
AAAGAAAGTGGGAAGTGAGG+GGG - chr4_4:81242662-81242681 None:intergenic 45.0%
GGAAAAGAAAGTGGGAAGTG+AGG - chr4_4:81242665-81242684 None:intergenic 45.0%
AGTTGCAGTTGCAGAGTGAG+GGG - chr4_4:81239385-81239404 None:intergenic 50.0%
CAGTTGCAGTTGCAGAGTGA+GGG - chr4_4:81239386-81239405 None:intergenic 50.0%
TGGTTGTTGTGTCAAGTGGG+GGG - chr4_4:81239540-81239559 None:intergenic 50.0%
!! ACCCGCAATTTAGCTTGTGG+GGG - chr4_4:81239751-81239770 None:intergenic 50.0%
!! GTACCACTTCCACTTTTCGC+AGG - chr4_4:81239922-81239941 None:intergenic 50.0%
! GAATGGGATAATGGTGAGCG+AGG + chr4_4:81240107-81240126 Msa0707780:five_prime_UTR 50.0%
ATCTGTGGCTAGAATGGCCA+TGG + chr4_4:81240218-81240237 Msa0707780:five_prime_UTR 50.0%
ATGGCCATGGCAATGAGTGA+TGG + chr4_4:81240231-81240250 Msa0707780:five_prime_UTR 50.0%
GTCACCATCACTCATTGCCA+TGG - chr4_4:81240238-81240257 None:intergenic 50.0%
! GGCAATGAGTGATGGTGACA+AGG + chr4_4:81240239-81240258 Msa0707780:five_prime_UTR 50.0%
GTACCCTGAAGAACCTGAGT+TGG + chr4_4:81240404-81240423 Msa0707780:five_prime_UTR 50.0%
GCTTCCAACTCAGGTTCTTC+AGG - chr4_4:81240411-81240430 None:intergenic 50.0%
!! CTCAAGAGTGCTTCCAACTC+AGG - chr4_4:81240420-81240439 None:intergenic 50.0%
AATAACGGTGGAGGATGGCA+TGG + chr4_4:81240621-81240640 Msa0707780:five_prime_UTR 50.0%
ATAACGGTGGAGGATGGCAT+GGG + chr4_4:81240622-81240641 Msa0707780:five_prime_UTR 50.0%
!! GGACAGGTTGGTTGGGTAAA+GGG + chr4_4:81240643-81240662 Msa0707780:five_prime_UTR 50.0%
TGGATGGCATGAACTTCCCT+TGG - chr4_4:81241215-81241234 None:intergenic 50.0%
AGGGAAGTTCATGCCATCCA+AGG + chr4_4:81241215-81241234 Msa0707780:five_prime_UTR 50.0%
!! CGATTCGGTTTCTCTGATGC+TGG + chr4_4:81241946-81241965 Msa0707780:CDS 50.0%
AGGAATCAGAAGAAGGCCAC+TGG + chr4_4:81242168-81242187 Msa0707780:intron 50.0%
ACCTCTGCAAAATGGGGAAC+AGG + chr4_4:81242701-81242720 Msa0707780:three_prime_UTR 50.0%
CAACTCTGCAGCCTCAAGTT+CGG - chr4_4:81242851-81242870 None:intergenic 50.0%
! GAGGCTGCAGAGTTGATTAG+TGG + chr4_4:81242856-81242875 Msa0707780:three_prime_UTR 50.0%
GCAGTTGCAGTTGCAGAGTG+AGG - chr4_4:81239387-81239406 None:intergenic 55.0%
GGGGGTTGCGTGAAGAACAT+TGG - chr4_4:81239522-81239541 None:intergenic 55.0%
!! CCGCAATTTAGCTTGTGGGG+GGG - chr4_4:81239749-81239768 None:intergenic 55.0%
CCCCCCCACAAGCTAAATTG+CGG + chr4_4:81239746-81239765 Msa0707780:five_prime_UTR 55.0%
!! CCCGCAATTTAGCTTGTGGG+GGG - chr4_4:81239750-81239769 None:intergenic 55.0%
CCCCCCACAAGCTAAATTGC+GGG + chr4_4:81239747-81239766 Msa0707780:five_prime_UTR 55.0%
GGTCTTCGACCTGCGAAAAG+TGG + chr4_4:81239910-81239929 Msa0707780:five_prime_UTR 55.0%
CGACCTGCGAAAAGTGGAAG+TGG + chr4_4:81239916-81239935 Msa0707780:five_prime_UTR 55.0%
!! ATGGCATGGGACAGGTTGGT+TGG + chr4_4:81240635-81240654 Msa0707780:five_prime_UTR 55.0%
!! TGGCATGGGACAGGTTGGTT+GGG + chr4_4:81240636-81240655 Msa0707780:five_prime_UTR 55.0%
!! GGGACAGGTTGGTTGGGTAA+AGG + chr4_4:81240642-81240661 Msa0707780:five_prime_UTR 55.0%
! GCCTGTTCCCCATTTTGCAG+AGG - chr4_4:81242705-81242724 None:intergenic 55.0%
GAGGATGGCATGGGACAGGT+TGG + chr4_4:81240631-81240650 Msa0707780:five_prime_UTR 60.0%
GGTGGAGGATGGCATGGGAC+AGG + chr4_4:81240627-81240646 Msa0707780:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 81239227 81243304 81239227 ID=Msa0707780;Name=Msa0707780
chr4_4 mRNA 81239227 81243304 81239227 ID=Msa0707780-mRNA-1;Parent=Msa0707780;Name=Msa0707780-mRNA-1;_AED=0.13;_eAED=0.13;_QI=1701|0.83|0.85|1|0.83|0.85|7|720|162
chr4_4 exon 81239227 81240833 81239227 ID=Msa0707780-mRNA-1:exon:26531;Parent=Msa0707780-mRNA-1
chr4_4 exon 81241147 81241236 81241147 ID=Msa0707780-mRNA-1:exon:26532;Parent=Msa0707780-mRNA-1
chr4_4 exon 81241337 81241518 81241337 ID=Msa0707780-mRNA-1:exon:26533;Parent=Msa0707780-mRNA-1
chr4_4 exon 81241639 81241742 81241639 ID=Msa0707780-mRNA-1:exon:26534;Parent=Msa0707780-mRNA-1
chr4_4 exon 81241943 81242011 81241943 ID=Msa0707780-mRNA-1:exon:26535;Parent=Msa0707780-mRNA-1
chr4_4 exon 81242170 81242416 81242170 ID=Msa0707780-mRNA-1:exon:26536;Parent=Msa0707780-mRNA-1
chr4_4 exon 81242694 81243304 81242694 ID=Msa0707780-mRNA-1:exon:26537;Parent=Msa0707780-mRNA-1
chr4_4 five_prime_UTR 81239227 81240833 81239227 ID=Msa0707780-mRNA-1:five_prime_utr;Parent=Msa0707780-mRNA-1
chr4_4 five_prime_UTR 81241147 81241236 81241147 ID=Msa0707780-mRNA-1:five_prime_utr;Parent=Msa0707780-mRNA-1
chr4_4 five_prime_UTR 81241337 81241340 81241337 ID=Msa0707780-mRNA-1:five_prime_utr;Parent=Msa0707780-mRNA-1
chr4_4 CDS 81241341 81241518 81241341 ID=Msa0707780-mRNA-1:cds;Parent=Msa0707780-mRNA-1
chr4_4 CDS 81241639 81241742 81241639 ID=Msa0707780-mRNA-1:cds;Parent=Msa0707780-mRNA-1
chr4_4 CDS 81241943 81242011 81241943 ID=Msa0707780-mRNA-1:cds;Parent=Msa0707780-mRNA-1
chr4_4 CDS 81242170 81242307 81242170 ID=Msa0707780-mRNA-1:cds;Parent=Msa0707780-mRNA-1
chr4_4 three_prime_UTR 81242308 81242416 81242308 ID=Msa0707780-mRNA-1:three_prime_utr;Parent=Msa0707780-mRNA-1
chr4_4 three_prime_UTR 81242694 81243304 81242694 ID=Msa0707780-mRNA-1:three_prime_utr;Parent=Msa0707780-mRNA-1
Gene Sequence

>Msa0707780

ATGCTGTTGTCAATGAATTGCGCCAAAAACTCCCTTCAAAGAAGTTTCCACTTATTGTTTTGCATCATAGGCGTATCAAAGGAGACAAAAGGGATAAACCAATCAACAAGGCATTGGTTGATAGGTGGAATAATGCTAATATACTCTATGCAACACCTACAGGATCAAATGATGATTGCTATAAAATTCAAATGCTTACTTGTTTCCAATGATGAGATGAGAGATCATTTGTTTCAACTTCTGGGAAATGACTTCTTCCCCAAGTGGAAAGAAAGGCATCAGGTACGATTCGGTTTCTCTGATGCTGGTCTTGAGTTTTACATGCCGCCTCCTTGTTCTGTTGTTATTCAGGAATCAGAAGAAGGCCACTGGCATATTCCAATTGAAGCAGAACTTAATGATGAAGCAGAAAGAAGATGGCTGTGTATCACACGTGCTAAATTGGACATGGTTAGTGGAGACTCTTCAACAACATACAAAGGTATCTAG

Protein sequence

>Msa0707780

MLLSMNCAKNSLQRSFHLLFCIIGVSKETKGINQSTRHWLIGGIMLIYSMQHLQDQMMIAIKFKCLLVSNDEMRDHLFQLLGNDFFPKWKERHQVRFGFSDAGLEFYMPPPCSVVIQESEEGHWHIPIEAELNDEAERRWLCITRAKLDMVSGDSSTTYKGI*