AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1367940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1367940 MtrunA17_Chr7g0236861 98.469 196 3 0 1 196 180 375 9.09e-137 387
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1367940 AT4G13150.1 81.443 194 36 0 1 194 150 343 4.56e-114 328
Msa1367940 AT4G13150.3 80.000 135 27 0 1 135 150 284 2.28e-75 228
Msa1367940 AT4G13150.2 83.333 126 21 0 1 126 150 275 1.10e-73 224
Msa1367940 AT4G13150.5 83.178 107 18 0 1 107 150 256 3.71e-61 191
Msa1367940 AT4G13150.4 83.178 107 18 0 1 107 150 256 3.71e-61 191

Find 49 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAAGAGGCTTTAAATATT+TGG 0.131301 tig0018573:-24932 Msa1367940:CDS
CAACCGTTCTATGGGTTTAT+TGG 0.170728 tig0018573:-24708 Msa1367940:intron
CAAAAGTATGGCAATCTTAT+TGG 0.194129 tig0018573:-23981 Msa1367940:CDS
TCATTACCTATAACAGAAAT+TGG 0.225358 tig0018573:+23126 None:intergenic
GAAAAGCTTCCCCAAGTAAA+AGG 0.226285 tig0018573:+24576 None:intergenic
GATCTACTTCTGGTTGCTTA+TGG 0.241388 tig0018573:-24979 None:intergenic
TATGGCAATCTTATTGGTTT+TGG 0.243971 tig0018573:-23975 Msa1367940:intron
CGACAACCAATTTCTGTTAT+AGG 0.251129 tig0018573:-23132 Msa1367940:three_prime_UTR
ACATCATATCAACCGTTCTA+TGG 0.263168 tig0018573:-24717 Msa1367940:CDS
TCTGTTCACACTTTCCATTC+AGG 0.270300 tig0018573:-23613 Msa1367940:intron
TGAAGAGGCTTTAAATATTT+GGG 0.312257 tig0018573:-24931 Msa1367940:CDS
CTTATTAACAATTCCCTTTG+TGG 0.336337 tig0018573:-23027 Msa1367940:three_prime_UTR
GTGACTGATAAGATCGAAAA+AGG 0.339069 tig0018573:+23154 None:intergenic
TGAACCCTAGCTCGTATATA+TGG 0.359915 tig0018573:+23082 None:intergenic
TCACATTATTATTACCATTA+CGG 0.360639 tig0018573:+23409 None:intergenic
TTCTGGTTGCTTATGGCTGC+AGG 0.373324 tig0018573:-24972 Msa1367940:exon
GTTGAAGCAGCCACAGCATA+TGG 0.393534 tig0018573:+23301 None:intergenic
ACAGACGTTGTACAAAAGTA+TGG 0.398457 tig0018573:-23993 Msa1367940:CDS
CTTCTGCTGATGTTACTTCA+AGG 0.413521 tig0018573:-24540 Msa1367940:CDS
GCAGTTGAACGATTCTCTCT+TGG 0.419870 tig0018573:-23827 Msa1367940:intron
ATATGTGATCAGCTGGGAAT+AGG 0.428888 tig0018573:-23479 Msa1367940:intron
ATACTCTTACATGGCATTCA+AGG 0.460024 tig0018573:+23237 None:intergenic
TTGCTTATGGCTGCAGGTTG+CGG 0.464815 tig0018573:-24966 Msa1367940:exon
ATATCGGCCGTTCCCTCAAA+AGG 0.477162 tig0018573:+23453 None:intergenic
TCAAGTGCAGGGTATTTCTC+CGG 0.480432 tig0018573:-23667 Msa1367940:intron
GTGCTTCAAATTCACCTGAA+TGG 0.488478 tig0018573:+23599 None:intergenic
CATCATATCAACCGTTCTAT+GGG 0.493913 tig0018573:-24716 Msa1367940:CDS
ATTAGCCATATATACGAGCT+AGG 0.497151 tig0018573:-23087 Msa1367940:three_prime_UTR
CTTATCTGCATATACAACTT+AGG 0.502539 tig0018573:+23200 None:intergenic
TGCTACTGTCGCAACCGTAA+TGG 0.508904 tig0018573:-23423 Msa1367940:intron
ATACATTCAAGTACCACAAA+GGG 0.512103 tig0018573:+23014 None:intergenic
TTCTGTCTCTCGACGGAACA+TGG 0.512776 tig0018573:-24777 Msa1367940:CDS
AAAAGCTTCCCCAAGTAAAA+GGG 0.514440 tig0018573:+24577 None:intergenic
ACAGTAGCAAGAGCAAATAT+CGG 0.537808 tig0018573:+23437 None:intergenic
CATTTGCTGAATCTTTCTCA+AGG 0.539846 tig0018573:-24750 Msa1367940:CDS
GCTCCTGCAAGAAAAGCTGT+AGG 0.567137 tig0018573:+23794 None:intergenic
ATATTCTGAATACTCTTACA+TGG 0.569842 tig0018573:+23228 None:intergenic
TTCTGCTGATGTTACTTCAA+GGG 0.570877 tig0018573:-24539 Msa1367940:intron
TGGTGTCAACAGTTAGGCAT+TGG 0.575572 tig0018573:-24038 Msa1367940:intron
AGCTTGTTTAATATTTCTCG+AGG 0.575968 tig0018573:-22978 Msa1367940:three_prime_UTR
CTCCTGCAAGAAAAGCTGTA+GGG 0.587434 tig0018573:+23795 None:intergenic
AGAACGGTTGATATGATGTA+CGG 0.594967 tig0018573:+24721 None:intergenic
GTTAGGCATTGGTAAAGAGA+AGG 0.598947 tig0018573:-24027 Msa1367940:CDS
AATACATTCAAGTACCACAA+AGG 0.598968 tig0018573:+23013 None:intergenic
TTAGCCATATATACGAGCTA+GGG 0.605205 tig0018573:-23086 Msa1367940:three_prime_UTR
TAGGTAATGATCAACTACAA+TGG 0.650847 tig0018573:-23113 Msa1367940:three_prime_UTR
GCAAGGCTTCTGTCTCTCGA+CGG 0.653198 tig0018573:-24784 Msa1367940:CDS
AGGTTGGTACGTCAATAGCA+AGG 0.665184 tig0018573:-24801 Msa1367940:CDS
TTACCAATAAACCCATAGAA+CGG 0.665450 tig0018573:+24705 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATATCTTAAAAACAA+AGG + tig0018573:23106-23125 None:intergenic 10.0%
!!! TTGTTTTTAAGATATTTAAT+AGG - tig0018573:23106-23125 Msa1367940:three_prime_UTR 10.0%
!!! ATTTTATTCACAAATATTTT+TGG - tig0018573:23866-23885 Msa1367940:intron 10.0%
!! TAACTTTATCAAATATAAAA+GGG + tig0018573:24182-24201 None:intergenic 10.0%
!! ATTAAATATCTTAAAAACAA+AGG + tig0018573:23106-23125 None:intergenic 10.0%
!!! TTGTTTTTAAGATATTTAAT+AGG - tig0018573:23106-23125 Msa1367940:three_prime_UTR 10.0%
!!! ATTTTATTCACAAATATTTT+TGG - tig0018573:23866-23885 Msa1367940:intron 10.0%
!! TAACTTTATCAAATATAAAA+GGG + tig0018573:24182-24201 None:intergenic 10.0%
!!! TTTTAAGATATTTAATAGGT+TGG - tig0018573:23110-23129 Msa1367940:three_prime_UTR 15.0%
!! ATACTTATACATAAAGATAT+GGG + tig0018573:24015-24034 None:intergenic 15.0%
!! TATACTTATACATAAAGATA+TGG + tig0018573:24016-24035 None:intergenic 15.0%
!! CTAACTTTATCAAATATAAA+AGG + tig0018573:24183-24202 None:intergenic 15.0%
!!! CTTTTATATTTGATAAAGTT+AGG - tig0018573:24181-24200 Msa1367940:intron 15.0%
!!! TTACCTTTTTTATTTTATAC+AGG - tig0018573:24586-24605 Msa1367940:CDS 15.0%
!!! TACCTTTTTTATTTTATACA+GGG - tig0018573:24587-24606 Msa1367940:CDS 15.0%
!!! TTTTAAGATATTTAATAGGT+TGG - tig0018573:23110-23129 Msa1367940:three_prime_UTR 15.0%
!! ATACTTATACATAAAGATAT+GGG + tig0018573:24015-24034 None:intergenic 15.0%
!! TATACTTATACATAAAGATA+TGG + tig0018573:24016-24035 None:intergenic 15.0%
!! CTAACTTTATCAAATATAAA+AGG + tig0018573:24183-24202 None:intergenic 15.0%
!!! CTTTTATATTTGATAAAGTT+AGG - tig0018573:24181-24200 Msa1367940:intron 15.0%
!!! TTACCTTTTTTATTTTATAC+AGG - tig0018573:24586-24605 Msa1367940:CDS 15.0%
!!! TACCTTTTTTATTTTATACA+GGG - tig0018573:24587-24606 Msa1367940:CDS 15.0%
!!! TTTAGTTCAGATTTATACAT+TGG - tig0018573:23449-23468 Msa1367940:CDS 20.0%
!! TTTATCTAATGACATAAACA+AGG - tig0018573:23492-23511 Msa1367940:intron 20.0%
!! TTATCTAATGACATAAACAA+GGG - tig0018573:23493-23512 Msa1367940:intron 20.0%
!!! GTCATATTATTTTCATAACT+AGG + tig0018573:23703-23722 None:intergenic 20.0%
!!! TTATTCACAAATATTTTTGG+TGG - tig0018573:23869-23888 Msa1367940:intron 20.0%
!! TTATATTTGATAAAGTTAGG+TGG - tig0018573:24184-24203 Msa1367940:intron 20.0%
!! TAAAAGAAATCACATTAAGA+AGG - tig0018573:24217-24236 Msa1367940:intron 20.0%
!! ACTTGAAGAAAAACAATTAA+AGG + tig0018573:24246-24265 None:intergenic 20.0%
!! TCACATTATTATTACCATTA+CGG + tig0018573:24521-24540 None:intergenic 20.0%
!! TTCCCTGTATAAAATAAAAA+AGG + tig0018573:24592-24611 None:intergenic 20.0%
!!! TTTATTTTATACAGGGAATT+TGG - tig0018573:24594-24613 Msa1367940:CDS 20.0%
!!! TTTAGTTCAGATTTATACAT+TGG - tig0018573:23449-23468 Msa1367940:CDS 20.0%
!! TTTATCTAATGACATAAACA+AGG - tig0018573:23492-23511 Msa1367940:intron 20.0%
!! TTATCTAATGACATAAACAA+GGG - tig0018573:23493-23512 Msa1367940:intron 20.0%
!!! GTCATATTATTTTCATAACT+AGG + tig0018573:23703-23722 None:intergenic 20.0%
!!! TTATTCACAAATATTTTTGG+TGG - tig0018573:23869-23888 Msa1367940:intron 20.0%
!! TTATATTTGATAAAGTTAGG+TGG - tig0018573:24184-24203 Msa1367940:intron 20.0%
!! TAAAAGAAATCACATTAAGA+AGG - tig0018573:24217-24236 Msa1367940:intron 20.0%
!! ACTTGAAGAAAAACAATTAA+AGG + tig0018573:24246-24265 None:intergenic 20.0%
!! TCACATTATTATTACCATTA+CGG + tig0018573:24521-24540 None:intergenic 20.0%
!! TTCCCTGTATAAAATAAAAA+AGG + tig0018573:24592-24611 None:intergenic 20.0%
!!! TTTATTTTATACAGGGAATT+TGG - tig0018573:24594-24613 Msa1367940:CDS 20.0%
!!! TGAAGAGGCTTTAAATATTT+GGG - tig0018573:23004-23023 Msa1367940:three_prime_UTR 25.0%
!! AAAAACTACTGATTGTTTCA+GGG - tig0018573:23304-23323 Msa1367940:CDS 25.0%
! TATCTAATGACATAAACAAG+GGG - tig0018573:23494-23513 Msa1367940:intron 25.0%
! GCTTATTATATAAGTTCTCA+TGG + tig0018573:23760-23779 None:intergenic 25.0%
! ATATTCTGAATACTCTTACA+TGG + tig0018573:24702-24721 None:intergenic 25.0%
! TCATTACCTATAACAGAAAT+TGG + tig0018573:24804-24823 None:intergenic 25.0%
!!! TGAAGAGGCTTTAAATATTT+GGG - tig0018573:23004-23023 Msa1367940:three_prime_UTR 25.0%
!! AAAAACTACTGATTGTTTCA+GGG - tig0018573:23304-23323 Msa1367940:CDS 25.0%
! TATCTAATGACATAAACAAG+GGG - tig0018573:23494-23513 Msa1367940:intron 25.0%
! GCTTATTATATAAGTTCTCA+TGG + tig0018573:23760-23779 None:intergenic 25.0%
! ATATTCTGAATACTCTTACA+TGG + tig0018573:24702-24721 None:intergenic 25.0%
! TCATTACCTATAACAGAAAT+TGG + tig0018573:24804-24823 None:intergenic 25.0%
!! GTGAAGAGGCTTTAAATATT+TGG - tig0018573:23003-23022 Msa1367940:three_prime_UTR 30.0%
AAACAAGAAGCAAACACATA+AGG + tig0018573:23063-23082 None:intergenic 30.0%
!!! AAAGGTGTTTTCAATTCAAC+GGG + tig0018573:23088-23107 None:intergenic 30.0%
!!! CAAAGGTGTTTTCAATTCAA+CGG + tig0018573:23089-23108 None:intergenic 30.0%
TTACCAATAAACCCATAGAA+CGG + tig0018573:23225-23244 None:intergenic 30.0%
! CAAAAACTACTGATTGTTTC+AGG - tig0018573:23303-23322 Msa1367940:CDS 30.0%
! AAAACTACTGATTGTTTCAG+GGG - tig0018573:23305-23324 Msa1367940:CDS 30.0%
GTTGTACATAATACTTCCTT+CGG - tig0018573:23414-23433 Msa1367940:intron 30.0%
! AATCTGAACTAAACTGATTC+AGG + tig0018573:23442-23461 None:intergenic 30.0%
ATCTAATGACATAAACAAGG+GGG - tig0018573:23495-23514 Msa1367940:intron 30.0%
GAACTTATATAATAAGCGCT+TGG - tig0018573:23763-23782 Msa1367940:intron 30.0%
TTAAGCTGTTTATCCAAACA+CGG - tig0018573:23790-23809 Msa1367940:CDS 30.0%
! CAAAAGTATGGCAATCTTAT+TGG - tig0018573:23946-23965 Msa1367940:intron 30.0%
!!! TATGGCAATCTTATTGGTTT+TGG - tig0018573:23952-23971 Msa1367940:intron 30.0%
TTATACATAAAGATATGGGC+AGG + tig0018573:24011-24030 None:intergenic 30.0%
AATCTATCAATCACTAACCA+AGG + tig0018573:24158-24177 None:intergenic 30.0%
TTTGATAAAGTTAGGTGGAA+AGG - tig0018573:24189-24208 Msa1367940:intron 30.0%
!! AATTGTTTTTCTTCAAGTGC+AGG - tig0018573:24248-24267 Msa1367940:intron 30.0%
!! ATTGTTTTTCTTCAAGTGCA+GGG - tig0018573:24249-24268 Msa1367940:intron 30.0%
!! CTGCTTTATTCTTTTATGTC+AGG - tig0018573:24648-24667 Msa1367940:intron 30.0%
! CTTTATTCTTTTATGTCAGG+CGG - tig0018573:24651-24670 Msa1367940:intron 30.0%
CTTATCTGCATATACAACTT+AGG + tig0018573:24730-24749 None:intergenic 30.0%
GATCGAAAAAGGTCAATAAA+TGG + tig0018573:24765-24784 None:intergenic 30.0%
TAGGTAATGATCAACTACAA+TGG - tig0018573:24814-24833 Msa1367940:intron 30.0%
CTTATTAACAATTCCCTTTG+TGG - tig0018573:24900-24919 Msa1367940:intron 30.0%
ATACATTCAAGTACCACAAA+GGG + tig0018573:24916-24935 None:intergenic 30.0%
AATACATTCAAGTACCACAA+AGG + tig0018573:24917-24936 None:intergenic 30.0%
! AGCTTGTTTAATATTTCTCG+AGG - tig0018573:24949-24968 Msa1367940:CDS 30.0%
!! GTGAAGAGGCTTTAAATATT+TGG - tig0018573:23003-23022 Msa1367940:three_prime_UTR 30.0%
AAACAAGAAGCAAACACATA+AGG + tig0018573:23063-23082 None:intergenic 30.0%
!!! AAAGGTGTTTTCAATTCAAC+GGG + tig0018573:23088-23107 None:intergenic 30.0%
!!! CAAAGGTGTTTTCAATTCAA+CGG + tig0018573:23089-23108 None:intergenic 30.0%
TTACCAATAAACCCATAGAA+CGG + tig0018573:23225-23244 None:intergenic 30.0%
! CAAAAACTACTGATTGTTTC+AGG - tig0018573:23303-23322 Msa1367940:CDS 30.0%
! AAAACTACTGATTGTTTCAG+GGG - tig0018573:23305-23324 Msa1367940:CDS 30.0%
GTTGTACATAATACTTCCTT+CGG - tig0018573:23414-23433 Msa1367940:intron 30.0%
! AATCTGAACTAAACTGATTC+AGG + tig0018573:23442-23461 None:intergenic 30.0%
ATCTAATGACATAAACAAGG+GGG - tig0018573:23495-23514 Msa1367940:intron 30.0%
GAACTTATATAATAAGCGCT+TGG - tig0018573:23763-23782 Msa1367940:intron 30.0%
TTAAGCTGTTTATCCAAACA+CGG - tig0018573:23790-23809 Msa1367940:CDS 30.0%
! CAAAAGTATGGCAATCTTAT+TGG - tig0018573:23946-23965 Msa1367940:intron 30.0%
!!! TATGGCAATCTTATTGGTTT+TGG - tig0018573:23952-23971 Msa1367940:intron 30.0%
TTATACATAAAGATATGGGC+AGG + tig0018573:24011-24030 None:intergenic 30.0%
AATCTATCAATCACTAACCA+AGG + tig0018573:24158-24177 None:intergenic 30.0%
TTTGATAAAGTTAGGTGGAA+AGG - tig0018573:24189-24208 Msa1367940:intron 30.0%
!! AATTGTTTTTCTTCAAGTGC+AGG - tig0018573:24248-24267 Msa1367940:intron 30.0%
!! ATTGTTTTTCTTCAAGTGCA+GGG - tig0018573:24249-24268 Msa1367940:intron 30.0%
!! CTGCTTTATTCTTTTATGTC+AGG - tig0018573:24648-24667 Msa1367940:intron 30.0%
! CTTTATTCTTTTATGTCAGG+CGG - tig0018573:24651-24670 Msa1367940:intron 30.0%
CTTATCTGCATATACAACTT+AGG + tig0018573:24730-24749 None:intergenic 30.0%
GATCGAAAAAGGTCAATAAA+TGG + tig0018573:24765-24784 None:intergenic 30.0%
TAGGTAATGATCAACTACAA+TGG - tig0018573:24814-24833 Msa1367940:intron 30.0%
CTTATTAACAATTCCCTTTG+TGG - tig0018573:24900-24919 Msa1367940:intron 30.0%
ATACATTCAAGTACCACAAA+GGG + tig0018573:24916-24935 None:intergenic 30.0%
AATACATTCAAGTACCACAA+AGG + tig0018573:24917-24936 None:intergenic 30.0%
! AGCTTGTTTAATATTTCTCG+AGG - tig0018573:24949-24968 Msa1367940:CDS 30.0%
! CATTTGCTGAATCTTTCTCA+AGG - tig0018573:23177-23196 Msa1367940:three_prime_UTR 35.0%
! AGAACGGTTGATATGATGTA+CGG + tig0018573:23209-23228 None:intergenic 35.0%
ACATCATATCAACCGTTCTA+TGG - tig0018573:23210-23229 Msa1367940:three_prime_UTR 35.0%
CATCATATCAACCGTTCTAT+GGG - tig0018573:23211-23230 Msa1367940:three_prime_UTR 35.0%
! TGACATGATACCCTTTTACT+TGG - tig0018573:23340-23359 Msa1367940:intron 35.0%
! GACATGATACCCTTTTACTT+GGG - tig0018573:23341-23360 Msa1367940:intron 35.0%
! ACATGATACCCTTTTACTTG+GGG - tig0018573:23342-23361 Msa1367940:intron 35.0%
AAAAGCTTCCCCAAGTAAAA+GGG + tig0018573:23353-23372 None:intergenic 35.0%
! TTCTGCTGATGTTACTTCAA+GGG - tig0018573:23388-23407 Msa1367940:intron 35.0%
ATTGGAGATTGAATCCAACT+AGG - tig0018573:23467-23486 Msa1367940:CDS 35.0%
TTGGAGATTGAATCCAACTA+GGG - tig0018573:23468-23487 Msa1367940:CDS 35.0%
TCATTAGATAAACCCCTAGT+TGG + tig0018573:23484-23503 None:intergenic 35.0%
TCCATAAGCTCTCTCAAAAA+GGG + tig0018573:23675-23694 None:intergenic 35.0%
TTCCATAAGCTCTCTCAAAA+AGG + tig0018573:23676-23695 None:intergenic 35.0%
TTTAAGCATTAGACCGTGTT+TGG + tig0018573:23806-23825 None:intergenic 35.0%
ACAGACGTTGTACAAAAGTA+TGG - tig0018573:23934-23953 Msa1367940:intron 35.0%
! ATTCAGGTGAATTTGAAGCA+CGG - tig0018573:24330-24349 Msa1367940:intron 35.0%
ACAGTAGCAAGAGCAAATAT+CGG + tig0018573:24493-24512 None:intergenic 35.0%
! GACAATTTTTCCATATGCTG+TGG - tig0018573:24616-24635 Msa1367940:intron 35.0%
ATACTCTTACATGGCATTCA+AGG + tig0018573:24693-24712 None:intergenic 35.0%
GTGACTGATAAGATCGAAAA+AGG + tig0018573:24776-24795 None:intergenic 35.0%
CGACAACCAATTTCTGTTAT+AGG - tig0018573:24795-24814 Msa1367940:CDS 35.0%
ATTAGCCATATATACGAGCT+AGG - tig0018573:24840-24859 Msa1367940:intron 35.0%
TTAGCCATATATACGAGCTA+GGG - tig0018573:24841-24860 Msa1367940:intron 35.0%
AAACTGCTAACTGTTATGAG+CGG - tig0018573:24974-24993 Msa1367940:exon 35.0%
! CATTTGCTGAATCTTTCTCA+AGG - tig0018573:23177-23196 Msa1367940:three_prime_UTR 35.0%
! AGAACGGTTGATATGATGTA+CGG + tig0018573:23209-23228 None:intergenic 35.0%
ACATCATATCAACCGTTCTA+TGG - tig0018573:23210-23229 Msa1367940:three_prime_UTR 35.0%
CATCATATCAACCGTTCTAT+GGG - tig0018573:23211-23230 Msa1367940:three_prime_UTR 35.0%
! TGACATGATACCCTTTTACT+TGG - tig0018573:23340-23359 Msa1367940:intron 35.0%
! GACATGATACCCTTTTACTT+GGG - tig0018573:23341-23360 Msa1367940:intron 35.0%
! ACATGATACCCTTTTACTTG+GGG - tig0018573:23342-23361 Msa1367940:intron 35.0%
AAAAGCTTCCCCAAGTAAAA+GGG + tig0018573:23353-23372 None:intergenic 35.0%
! TTCTGCTGATGTTACTTCAA+GGG - tig0018573:23388-23407 Msa1367940:intron 35.0%
ATTGGAGATTGAATCCAACT+AGG - tig0018573:23467-23486 Msa1367940:CDS 35.0%
TTGGAGATTGAATCCAACTA+GGG - tig0018573:23468-23487 Msa1367940:CDS 35.0%
TCATTAGATAAACCCCTAGT+TGG + tig0018573:23484-23503 None:intergenic 35.0%
TCCATAAGCTCTCTCAAAAA+GGG + tig0018573:23675-23694 None:intergenic 35.0%
TTCCATAAGCTCTCTCAAAA+AGG + tig0018573:23676-23695 None:intergenic 35.0%
TTTAAGCATTAGACCGTGTT+TGG + tig0018573:23806-23825 None:intergenic 35.0%
ACAGACGTTGTACAAAAGTA+TGG - tig0018573:23934-23953 Msa1367940:intron 35.0%
! ATTCAGGTGAATTTGAAGCA+CGG - tig0018573:24330-24349 Msa1367940:intron 35.0%
ACAGTAGCAAGAGCAAATAT+CGG + tig0018573:24493-24512 None:intergenic 35.0%
! GACAATTTTTCCATATGCTG+TGG - tig0018573:24616-24635 Msa1367940:intron 35.0%
ATACTCTTACATGGCATTCA+AGG + tig0018573:24693-24712 None:intergenic 35.0%
GTGACTGATAAGATCGAAAA+AGG + tig0018573:24776-24795 None:intergenic 35.0%
CGACAACCAATTTCTGTTAT+AGG - tig0018573:24795-24814 Msa1367940:CDS 35.0%
ATTAGCCATATATACGAGCT+AGG - tig0018573:24840-24859 Msa1367940:intron 35.0%
TTAGCCATATATACGAGCTA+GGG - tig0018573:24841-24860 Msa1367940:intron 35.0%
! GATCTACTTCTGGTTGCTTA+TGG - tig0018573:22956-22975 Msa1367940:three_prime_UTR 40.0%
CAACCGTTCTATGGGTTTAT+TGG - tig0018573:23219-23238 Msa1367940:three_prime_UTR 40.0%
GAAAAGCTTCCCCAAGTAAA+AGG + tig0018573:23354-23373 None:intergenic 40.0%
! CTTCTGCTGATGTTACTTCA+AGG - tig0018573:23387-23406 Msa1367940:intron 40.0%
! TAAACTGATTCAGGTTCCGA+AGG + tig0018573:23433-23452 None:intergenic 40.0%
TGGAGATTGAATCCAACTAG+GGG - tig0018573:23469-23488 Msa1367940:CDS 40.0%
CTTTCAGTCACATGACAACA+AGG + tig0018573:23523-23542 None:intergenic 40.0%
! CTTGTTGTCATGTGACTGAA+AGG - tig0018573:23521-23540 Msa1367940:intron 40.0%
TGTCATGTGACTGAAAGGTT+TGG - tig0018573:23526-23545 Msa1367940:intron 40.0%
GTCATGTGACTGAAAGGTTT+GGG - tig0018573:23527-23546 Msa1367940:intron 40.0%
! AAAGGTTTGGGTTCAATTCC+TGG - tig0018573:23539-23558 Msa1367940:intron 40.0%
AGCCTCTTGCGTAAAAAACA+GGG - tig0018573:23566-23585 Msa1367940:intron 40.0%
CGTACTATACACCAAATGGT+TGG - tig0018573:23597-23616 Msa1367940:intron 40.0%
!!! TTTTGGTGGTGTCAACAGTT+AGG - tig0018573:23883-23902 Msa1367940:intron 40.0%
!! GTTAGGCATTGGTAAAGAGA+AGG - tig0018573:23900-23919 Msa1367940:intron 40.0%
!!! TTTTTTGCAGGGGTCTGTTT+TGG - tig0018573:24288-24307 Msa1367940:intron 40.0%
! TTTTTGCAGGGGTCTGTTTT+GGG - tig0018573:24289-24308 Msa1367940:intron 40.0%
TCTGTTCACACTTTCCATTC+AGG - tig0018573:24314-24333 Msa1367940:intron 40.0%
GTGCTTCAAATTCACCTGAA+TGG + tig0018573:24331-24350 None:intergenic 40.0%
TCCTTACATATGTGATCAGC+TGG - tig0018573:24441-24460 Msa1367940:intron 40.0%
CCTTACATATGTGATCAGCT+GGG - tig0018573:24442-24461 Msa1367940:intron 40.0%
ATATGTGATCAGCTGGGAAT+AGG - tig0018573:24448-24467 Msa1367940:intron 40.0%
! TGGGAATAGGATTCCTTTTG+AGG - tig0018573:24461-24480 Msa1367940:intron 40.0%
! GGGAATAGGATTCCTTTTGA+GGG - tig0018573:24462-24481 Msa1367940:intron 40.0%
!! TAGGATTCCTTTTGAGGGAA+CGG - tig0018573:24467-24486 Msa1367940:intron 40.0%
TGAACCCTAGCTCGTATATA+TGG + tig0018573:24848-24867 None:intergenic 40.0%
! GATCTACTTCTGGTTGCTTA+TGG - tig0018573:22956-22975 Msa1367940:three_prime_UTR 40.0%
CAACCGTTCTATGGGTTTAT+TGG - tig0018573:23219-23238 Msa1367940:three_prime_UTR 40.0%
GAAAAGCTTCCCCAAGTAAA+AGG + tig0018573:23354-23373 None:intergenic 40.0%
! CTTCTGCTGATGTTACTTCA+AGG - tig0018573:23387-23406 Msa1367940:intron 40.0%
! TAAACTGATTCAGGTTCCGA+AGG + tig0018573:23433-23452 None:intergenic 40.0%
TGGAGATTGAATCCAACTAG+GGG - tig0018573:23469-23488 Msa1367940:CDS 40.0%
CTTTCAGTCACATGACAACA+AGG + tig0018573:23523-23542 None:intergenic 40.0%
! CTTGTTGTCATGTGACTGAA+AGG - tig0018573:23521-23540 Msa1367940:intron 40.0%
TGTCATGTGACTGAAAGGTT+TGG - tig0018573:23526-23545 Msa1367940:intron 40.0%
GTCATGTGACTGAAAGGTTT+GGG - tig0018573:23527-23546 Msa1367940:intron 40.0%
! AAAGGTTTGGGTTCAATTCC+TGG - tig0018573:23539-23558 Msa1367940:intron 40.0%
AGCCTCTTGCGTAAAAAACA+GGG - tig0018573:23566-23585 Msa1367940:intron 40.0%
CGTACTATACACCAAATGGT+TGG - tig0018573:23597-23616 Msa1367940:intron 40.0%
!!! TTTTGGTGGTGTCAACAGTT+AGG - tig0018573:23883-23902 Msa1367940:intron 40.0%
!! GTTAGGCATTGGTAAAGAGA+AGG - tig0018573:23900-23919 Msa1367940:intron 40.0%
!!! TTTTTTGCAGGGGTCTGTTT+TGG - tig0018573:24288-24307 Msa1367940:intron 40.0%
! TTTTTGCAGGGGTCTGTTTT+GGG - tig0018573:24289-24308 Msa1367940:intron 40.0%
TCTGTTCACACTTTCCATTC+AGG - tig0018573:24314-24333 Msa1367940:intron 40.0%
GTGCTTCAAATTCACCTGAA+TGG + tig0018573:24331-24350 None:intergenic 40.0%
TCCTTACATATGTGATCAGC+TGG - tig0018573:24441-24460 Msa1367940:intron 40.0%
CCTTACATATGTGATCAGCT+GGG - tig0018573:24442-24461 Msa1367940:intron 40.0%
ATATGTGATCAGCTGGGAAT+AGG - tig0018573:24448-24467 Msa1367940:intron 40.0%
! TGGGAATAGGATTCCTTTTG+AGG - tig0018573:24461-24480 Msa1367940:intron 40.0%
! GGGAATAGGATTCCTTTTGA+GGG - tig0018573:24462-24481 Msa1367940:intron 40.0%
!! TAGGATTCCTTTTGAGGGAA+CGG - tig0018573:24467-24486 Msa1367940:intron 40.0%
TGAACCCTAGCTCGTATATA+TGG + tig0018573:24848-24867 None:intergenic 40.0%
! CGGTCTTTTCATCAGTGAAG+AGG - tig0018573:22989-23008 Msa1367940:three_prime_UTR 45.0%
! TTTGGGTCTGTGCTTTTCAC+TGG - tig0018573:23021-23040 Msa1367940:three_prime_UTR 45.0%
!! AGGTTGGTACGTCAATAGCA+AGG - tig0018573:23126-23145 Msa1367940:three_prime_UTR 45.0%
! GGGAAGCTTTTCAGAAAGTC+TGG - tig0018573:23362-23381 Msa1367940:intron 45.0%
CAGCCTCTTGCGTAAAAAAC+AGG - tig0018573:23565-23584 Msa1367940:intron 45.0%
!!! TGCCCTGTTTTTTACGCAAG+AGG + tig0018573:23571-23590 None:intergenic 45.0%
CTTGCGTAAAAAACAGGGCA+AGG - tig0018573:23571-23590 Msa1367940:intron 45.0%
GCTGCGTACTATACACCAAA+TGG - tig0018573:23593-23612 Msa1367940:intron 45.0%
AAGCTCTCTCAAAAAGGGCA+GGG + tig0018573:23670-23689 None:intergenic 45.0%
TAAGCTCTCTCAAAAAGGGC+AGG + tig0018573:23671-23690 None:intergenic 45.0%
!! GCCCTTTTTGAGAGAGCTTA+TGG - tig0018573:23671-23690 Msa1367940:intron 45.0%
! TGGTGTCAACAGTTAGGCAT+TGG - tig0018573:23889-23908 Msa1367940:intron 45.0%
GCAGTTGAACGATTCTCTCT+TGG - tig0018573:24100-24119 Msa1367940:intron 45.0%
! AACCCTACAGCTTTTCTTGC+AGG - tig0018573:24130-24149 Msa1367940:intron 45.0%
CTCCTGCAAGAAAAGCTGTA+GGG + tig0018573:24135-24154 None:intergenic 45.0%
! TCAAGTGCAGGGTATTTCTC+CGG - tig0018573:24260-24279 Msa1367940:intron 45.0%
!!! TCTCCGGAGTTGTTTTTTGC+AGG - tig0018573:24276-24295 Msa1367940:intron 45.0%
!!! CTCCGGAGTTGTTTTTTGCA+GGG - tig0018573:24277-24296 Msa1367940:intron 45.0%
!!! TCCGGAGTTGTTTTTTGCAG+GGG - tig0018573:24278-24297 Msa1367940:intron 45.0%
ACCCCTGCAAAAAACAACTC+CGG + tig0018573:24282-24301 None:intergenic 45.0%
! TTTTGCAGGGGTCTGTTTTG+GGG - tig0018573:24290-24309 Msa1367940:intron 45.0%
CCCAGCTGATCACATATGTA+AGG + tig0018573:24445-24464 None:intergenic 45.0%
! CGGTCTTTTCATCAGTGAAG+AGG - tig0018573:22989-23008 Msa1367940:three_prime_UTR 45.0%
! TTTGGGTCTGTGCTTTTCAC+TGG - tig0018573:23021-23040 Msa1367940:three_prime_UTR 45.0%
!! AGGTTGGTACGTCAATAGCA+AGG - tig0018573:23126-23145 Msa1367940:three_prime_UTR 45.0%
! GGGAAGCTTTTCAGAAAGTC+TGG - tig0018573:23362-23381 Msa1367940:intron 45.0%
CAGCCTCTTGCGTAAAAAAC+AGG - tig0018573:23565-23584 Msa1367940:intron 45.0%
!!! TGCCCTGTTTTTTACGCAAG+AGG + tig0018573:23571-23590 None:intergenic 45.0%
CTTGCGTAAAAAACAGGGCA+AGG - tig0018573:23571-23590 Msa1367940:intron 45.0%
GCTGCGTACTATACACCAAA+TGG - tig0018573:23593-23612 Msa1367940:intron 45.0%
AAGCTCTCTCAAAAAGGGCA+GGG + tig0018573:23670-23689 None:intergenic 45.0%
TAAGCTCTCTCAAAAAGGGC+AGG + tig0018573:23671-23690 None:intergenic 45.0%
!! GCCCTTTTTGAGAGAGCTTA+TGG - tig0018573:23671-23690 Msa1367940:intron 45.0%
! TGGTGTCAACAGTTAGGCAT+TGG - tig0018573:23889-23908 Msa1367940:intron 45.0%
GCAGTTGAACGATTCTCTCT+TGG - tig0018573:24100-24119 Msa1367940:intron 45.0%
! AACCCTACAGCTTTTCTTGC+AGG - tig0018573:24130-24149 Msa1367940:intron 45.0%
CTCCTGCAAGAAAAGCTGTA+GGG + tig0018573:24135-24154 None:intergenic 45.0%
! TCAAGTGCAGGGTATTTCTC+CGG - tig0018573:24260-24279 Msa1367940:intron 45.0%
!!! TCTCCGGAGTTGTTTTTTGC+AGG - tig0018573:24276-24295 Msa1367940:intron 45.0%
!!! CTCCGGAGTTGTTTTTTGCA+GGG - tig0018573:24277-24296 Msa1367940:intron 45.0%
!!! TCCGGAGTTGTTTTTTGCAG+GGG - tig0018573:24278-24297 Msa1367940:intron 45.0%
ACCCCTGCAAAAAACAACTC+CGG + tig0018573:24282-24301 None:intergenic 45.0%
! TTTTGCAGGGGTCTGTTTTG+GGG - tig0018573:24290-24309 Msa1367940:intron 45.0%
CCCAGCTGATCACATATGTA+AGG + tig0018573:24445-24464 None:intergenic 45.0%
! TTCTGGTTGCTTATGGCTGC+AGG - tig0018573:22963-22982 Msa1367940:three_prime_UTR 50.0%
TTGCTTATGGCTGCAGGTTG+CGG - tig0018573:22969-22988 Msa1367940:three_prime_UTR 50.0%
TTCTGTCTCTCGACGGAACA+TGG - tig0018573:23150-23169 Msa1367940:three_prime_UTR 50.0%
! TTACGCAAGAGGCTGTTTCC+AGG + tig0018573:23560-23579 None:intergenic 50.0%
GCTCCTGCAAGAAAAGCTGT+AGG + tig0018573:24136-24155 None:intergenic 50.0%
! AGCTTTTCTTGCAGGAGCCT+TGG - tig0018573:24138-24157 Msa1367940:intron 50.0%
!! TTTGCAGGGGTCTGTTTTGG+GGG - tig0018573:24291-24310 Msa1367940:intron 50.0%
ATATCGGCCGTTCCCTCAAA+AGG + tig0018573:24477-24496 None:intergenic 50.0%
TGCTACTGTCGCAACCGTAA+TGG - tig0018573:24504-24523 Msa1367940:intron 50.0%
GTTGAAGCAGCCACAGCATA+TGG + tig0018573:24629-24648 None:intergenic 50.0%
! TTCTGGTTGCTTATGGCTGC+AGG - tig0018573:22963-22982 Msa1367940:three_prime_UTR 50.0%
TTGCTTATGGCTGCAGGTTG+CGG - tig0018573:22969-22988 Msa1367940:three_prime_UTR 50.0%
TTCTGTCTCTCGACGGAACA+TGG - tig0018573:23150-23169 Msa1367940:three_prime_UTR 50.0%
! TTACGCAAGAGGCTGTTTCC+AGG + tig0018573:23560-23579 None:intergenic 50.0%
GCTCCTGCAAGAAAAGCTGT+AGG + tig0018573:24136-24155 None:intergenic 50.0%
! AGCTTTTCTTGCAGGAGCCT+TGG - tig0018573:24138-24157 Msa1367940:intron 50.0%
!! TTTGCAGGGGTCTGTTTTGG+GGG - tig0018573:24291-24310 Msa1367940:intron 50.0%
ATATCGGCCGTTCCCTCAAA+AGG + tig0018573:24477-24496 None:intergenic 50.0%
TGCTACTGTCGCAACCGTAA+TGG - tig0018573:24504-24523 Msa1367940:intron 50.0%
GTTGAAGCAGCCACAGCATA+TGG + tig0018573:24629-24648 None:intergenic 50.0%
GCAAGGCTTCTGTCTCTCGA+CGG - tig0018573:23143-23162 Msa1367940:three_prime_UTR 55.0%
CAAATGGTTGGACGCCTTCC+CGG - tig0018573:23609-23628 Msa1367940:intron 55.0%
ACAGAGCTACCGCATACGCA+GGG + tig0018573:23636-23655 None:intergenic 55.0%
! TATGCGGTAGCTCTGTGGAC+CGG - tig0018573:23640-23659 Msa1367940:CDS 55.0%
GCAAGGCTTCTGTCTCTCGA+CGG - tig0018573:23143-23162 Msa1367940:three_prime_UTR 55.0%
CAAATGGTTGGACGCCTTCC+CGG - tig0018573:23609-23628 Msa1367940:intron 55.0%
ACAGAGCTACCGCATACGCA+GGG + tig0018573:23636-23655 None:intergenic 55.0%
! TATGCGGTAGCTCTGTGGAC+CGG - tig0018573:23640-23659 Msa1367940:CDS 55.0%
!! CGGGAAGGCGTCCAACCATT+TGG + tig0018573:23611-23630 None:intergenic 60.0%
CACAGAGCTACCGCATACGC+AGG + tig0018573:23637-23656 None:intergenic 60.0%
! CTGCGTATGCGGTAGCTCTG+TGG - tig0018573:23635-23654 Msa1367940:CDS 60.0%
! ATGCGGTAGCTCTGTGGACC+GGG - tig0018573:23641-23660 Msa1367940:CDS 60.0%
TCAAAAAGGGCAGGGCAGCC+CGG + tig0018573:23662-23681 None:intergenic 60.0%
!! CGGGAAGGCGTCCAACCATT+TGG + tig0018573:23611-23630 None:intergenic 60.0%
CACAGAGCTACCGCATACGC+AGG + tig0018573:23637-23656 None:intergenic 60.0%
! CTGCGTATGCGGTAGCTCTG+TGG - tig0018573:23635-23654 Msa1367940:CDS 60.0%
! ATGCGGTAGCTCTGTGGACC+GGG - tig0018573:23641-23660 Msa1367940:CDS 60.0%
TCAAAAAGGGCAGGGCAGCC+CGG + tig0018573:23662-23681 None:intergenic 60.0%
CTTCCCGGACCCTGCGTATG+CGG - tig0018573:23624-23643 Msa1367940:CDS 65.0%
CTACCGCATACGCAGGGTCC+GGG + tig0018573:23630-23649 None:intergenic 65.0%
GCTACCGCATACGCAGGGTC+CGG + tig0018573:23631-23650 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG - tig0018573:23624-23643 Msa1367940:CDS 65.0%
CTACCGCATACGCAGGGTCC+GGG + tig0018573:23630-23649 None:intergenic 65.0%
GCTACCGCATACGCAGGGTC+CGG + tig0018573:23631-23650 None:intergenic 65.0%
CGCATACGCAGGGTCCGGGA+AGG + tig0018573:23626-23645 None:intergenic 70.0%
CGCATACGCAGGGTCCGGGA+AGG + tig0018573:23626-23645 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0018573 gene 22955 24994 22955 ID=Msa1367940;Name=Msa1367940
tig0018573 mRNA 22955 24994 22955 ID=Msa1367940-mRNA-1;Parent=Msa1367940;Name=Msa1367940-mRNA-1;_AED=0.13;_eAED=0.13;_QI=20|1|1|1|1|1|8|306|196
tig0018573 exon 22955 23341 22955 ID=Msa1367940-mRNA-1:exon:217;Parent=Msa1367940-mRNA-1
tig0018573 exon 23424 23489 23424 ID=Msa1367940-mRNA-1:exon:216;Parent=Msa1367940-mRNA-1
tig0018573 exon 23614 23679 23614 ID=Msa1367940-mRNA-1:exon:215;Parent=Msa1367940-mRNA-1
tig0018573 exon 23790 23845 23790 ID=Msa1367940-mRNA-1:exon:214;Parent=Msa1367940-mRNA-1
tig0018573 exon 23976 24048 23976 ID=Msa1367940-mRNA-1:exon:213;Parent=Msa1367940-mRNA-1
tig0018573 exon 24540 24624 24540 ID=Msa1367940-mRNA-1:exon:212;Parent=Msa1367940-mRNA-1
tig0018573 exon 24709 24821 24709 ID=Msa1367940-mRNA-1:exon:211;Parent=Msa1367940-mRNA-1
tig0018573 exon 24924 24994 24924 ID=Msa1367940-mRNA-1:exon:210;Parent=Msa1367940-mRNA-1
tig0018573 five_prime_UTR 24975 24994 24975 ID=Msa1367940-mRNA-1:five_prime_utr;Parent=Msa1367940-mRNA-1
tig0018573 CDS 24924 24974 24924 ID=Msa1367940-mRNA-1:cds;Parent=Msa1367940-mRNA-1
tig0018573 CDS 24709 24821 24709 ID=Msa1367940-mRNA-1:cds;Parent=Msa1367940-mRNA-1
tig0018573 CDS 24540 24624 24540 ID=Msa1367940-mRNA-1:cds;Parent=Msa1367940-mRNA-1
tig0018573 CDS 23976 24048 23976 ID=Msa1367940-mRNA-1:cds;Parent=Msa1367940-mRNA-1
tig0018573 CDS 23790 23845 23790 ID=Msa1367940-mRNA-1:cds;Parent=Msa1367940-mRNA-1
tig0018573 CDS 23614 23679 23614 ID=Msa1367940-mRNA-1:cds;Parent=Msa1367940-mRNA-1
tig0018573 CDS 23424 23489 23424 ID=Msa1367940-mRNA-1:cds;Parent=Msa1367940-mRNA-1
tig0018573 CDS 23261 23341 23261 ID=Msa1367940-mRNA-1:cds;Parent=Msa1367940-mRNA-1
tig0018573 three_prime_UTR 22955 23260 22955 ID=Msa1367940-mRNA-1:three_prime_utr;Parent=Msa1367940-mRNA-1
Gene Sequence

>Msa1367940

ATGGCTGCAGGTTGCGGTCTTTTCATCAGTGAAGAGGCTTTAAATATTTGGGTTGGTACGTCAATAGCAAGGCTTCTGTCTCTCGACGGAACATGGCAGTCATTTGCTGAATCTTTCTCAAGGAATGCTCCGTACATCATATCAACCGTTCTATGGGTTTATTGGGGAGTTTGCATTAGTGACATGATACCCTTTTACTTGGGGAAGCTTTTCAGAAAGTCTGGTGCTTCTGCTGATGTTACTTCAAGGTTAGGCATTGGTAAAGAGAAGGCTACAGAAATCACAGACGTTGTACAAAAGTATGGCAATCTTATTGGTTTTGTTGAACGATTCTCTCTTGGAGTGAGAAACCCTACAGCTTTTCTTGCAGGAGCCTTGGGTATTTCTCCGGAGTTGTTTTTTGCAGGGGTCTGTTTTGGGGGTCTGTTCACACTTTCCATTCAGCTGGGAATAGGATTCCTTTTGAGGGAACGGCCGATATTTGCTCTTGCTACTGTCGCAACCGTAATGGGAATTTGGACAATTTTTCCATATGCTGTGGCTGCTTCAACTGCTTTATTCTTTTATGTCAGGCGGAAGTACTTATCTTAG

Protein sequence

>Msa1367940

MAAGCGLFISEEALNIWVGTSIARLLSLDGTWQSFAESFSRNAPYIISTVLWVYWGVCISDMIPFYLGKLFRKSGASADVTSRLGIGKEKATEITDVVQKYGNLIGFVERFSLGVRNPTAFLAGALGISPELFFAGVCFGGLFTLSIQLGIGFLLRERPIFALATVATVMGIWTIFPYAVAASTALFFYVRRKYLS*