Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366010 | XP_013460371.3 | 86.475 | 451 | 49 | 2 | 1 | 451 | 1 | 439 | 0.0 | 782 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366010 | sp|Q8GYW8|SCT_ARATH | 37.632 | 473 | 266 | 13 | 1 | 464 | 1 | 453 | 3.26e-83 | 267 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366010 | A0A072UX90 | 86.475 | 451 | 49 | 2 | 1 | 451 | 1 | 439 | 0.0 | 782 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012440 | Msa0366010 | 0.812653 | 3.804469e-51 | -8.615850e-47 |
| Msa0057240 | Msa0366010 | 0.811726 | 6.060210e-51 | -8.615850e-47 |
| Msa0149560 | Msa0366010 | 0.815656 | 8.265814e-52 | -8.615850e-47 |
| Msa0161100 | Msa0366010 | 0.817854 | 2.657545e-52 | -8.615850e-47 |
| Msa0161200 | Msa0366010 | 0.812976 | 3.232250e-51 | -8.615850e-47 |
| Msa0161210 | Msa0366010 | 0.800066 | 1.715356e-48 | -8.615850e-47 |
| Msa0161220 | Msa0366010 | 0.802402 | 5.707310e-49 | -8.615850e-47 |
| Msa0184990 | Msa0366010 | 0.809826 | 1.561854e-50 | -8.615850e-47 |
| Msa0219190 | Msa0366010 | 0.833329 | 5.678554e-56 | -8.615850e-47 |
| Msa0366010 | Msa0413930 | 0.868348 | 6.981010e-66 | -8.615850e-47 |
| Msa0366010 | Msa0458950 | 0.855661 | 5.431356e-62 | -8.615850e-47 |
| Msa0366010 | Msa0619980 | 0.801557 | 8.512250e-49 | -8.615850e-47 |
| Msa0366010 | Msa0663090 | 0.816815 | 4.552251e-52 | -8.615850e-47 |
| Msa0366010 | Msa1073350 | 0.815902 | 7.287241e-52 | -8.615850e-47 |
| Msa0366010 | Msa1116930 | 0.805257 | 1.456599e-49 | -8.615850e-47 |
| Msa0366010 | Msa1213060 | 0.816225 | 6.169644e-52 | -8.615850e-47 |
| Msa0366010 | Msa1379990 | 0.823176 | 1.595120e-53 | -8.615850e-47 |
| Msa0366010 | Msa1420060 | 0.853058 | 3.070680e-61 | -8.615850e-47 |
| Msa0366010 | Msa1429420 | 0.812198 | 4.783898e-51 | -8.615850e-47 |
| Msa0298240 | Msa0366010 | 0.818992 | 1.467674e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366010 | MtrunA17_Chr3g0106721 | 86.475 | 451 | 49 | 2 | 1 | 451 | 1 | 439 | 0.0 | 782 |
| Msa0366010 | MtrunA17_Chr3g0106691 | 79.355 | 465 | 91 | 3 | 1 | 465 | 47 | 506 | 0.0 | 753 |
| Msa0366010 | MtrunA17_Chr3g0106661 | 70.127 | 472 | 128 | 7 | 1 | 465 | 1 | 466 | 0.0 | 664 |
| Msa0366010 | MtrunA17_Chr3g0106741 | 65.700 | 414 | 130 | 5 | 54 | 465 | 33 | 436 | 0.0 | 543 |
| Msa0366010 | MtrunA17_Chr3g0106761 | 63.923 | 413 | 137 | 4 | 54 | 465 | 4 | 405 | 0.0 | 536 |
| Msa0366010 | MtrunA17_Chr6g0470591 | 58.478 | 460 | 181 | 6 | 9 | 463 | 8 | 462 | 0.0 | 520 |
| Msa0366010 | MtrunA17_Chr4g0027071 | 48.408 | 471 | 216 | 12 | 3 | 464 | 4 | 456 | 3.64e-140 | 410 |
| Msa0366010 | MtrunA17_Chr3g0106711 | 75.641 | 234 | 53 | 3 | 1 | 233 | 1 | 231 | 2.53e-126 | 367 |
| Msa0366010 | MtrunA17_Chr3g0106701 | 80.000 | 175 | 35 | 0 | 296 | 470 | 1 | 175 | 1.30e-96 | 288 |
| Msa0366010 | MtrunA17_Chr3g0106631 | 85.235 | 149 | 22 | 0 | 155 | 303 | 1 | 149 | 2.67e-88 | 266 |
| Msa0366010 | MtrunA17_Chr3g0106621 | 83.582 | 134 | 12 | 1 | 337 | 470 | 1 | 124 | 3.76e-71 | 221 |
| Msa0366010 | MtrunA17_Chr2g0283361 | 30.416 | 457 | 288 | 17 | 12 | 461 | 2 | 435 | 2.06e-53 | 186 |
| Msa0366010 | MtrunA17_Chr3g0106641 | 90.000 | 90 | 9 | 0 | 1 | 90 | 44 | 133 | 5.89e-49 | 164 |
| Msa0366010 | MtrunA17_Chr1g0165661 | 30.946 | 349 | 219 | 11 | 8 | 350 | 5 | 337 | 1.74e-36 | 140 |
| Msa0366010 | MtrunA17_Chr7g0270771 | 33.451 | 284 | 154 | 9 | 19 | 297 | 12 | 265 | 5.66e-36 | 134 |
| Msa0366010 | MtrunA17_Chr3g0106771 | 73.034 | 89 | 22 | 1 | 1 | 89 | 1 | 87 | 1.39e-34 | 124 |
| Msa0366010 | MtrunA17_Chr3g0106751 | 71.910 | 89 | 23 | 1 | 1 | 89 | 1 | 87 | 3.45e-34 | 123 |
| Msa0366010 | MtrunA17_Chr2g0306321 | 28.423 | 482 | 280 | 23 | 7 | 460 | 13 | 457 | 1.28e-32 | 129 |
| Msa0366010 | MtrunA17_Chr1g0191081 | 27.434 | 452 | 293 | 12 | 21 | 463 | 22 | 447 | 1.39e-32 | 129 |
| Msa0366010 | MtrunA17_Chr7g0224391 | 30.295 | 373 | 227 | 13 | 8 | 370 | 13 | 362 | 1.61e-32 | 128 |
| Msa0366010 | MtrunA17_Chr8g0386141 | 28.763 | 372 | 231 | 13 | 10 | 370 | 5 | 353 | 2.56e-32 | 128 |
| Msa0366010 | MtrunA17_Chr1g0165681 | 28.529 | 340 | 217 | 9 | 19 | 350 | 16 | 337 | 8.96e-32 | 126 |
| Msa0366010 | MtrunA17_Chr3g0113821 | 27.143 | 420 | 248 | 13 | 12 | 403 | 5 | 394 | 1.61e-31 | 125 |
| Msa0366010 | MtrunA17_Chr3g0106651 | 70.370 | 81 | 23 | 1 | 10 | 89 | 38 | 118 | 5.07e-29 | 110 |
| Msa0366010 | MtrunA17_Chr1g0165671 | 26.211 | 454 | 294 | 13 | 19 | 463 | 34 | 455 | 1.03e-28 | 118 |
| Msa0366010 | MtrunA17_Chr7g0273761 | 29.545 | 352 | 227 | 10 | 6 | 350 | 376 | 713 | 7.47e-28 | 117 |
| Msa0366010 | MtrunA17_Chr3g0132001 | 27.248 | 367 | 242 | 12 | 10 | 370 | 12 | 359 | 7.23e-27 | 112 |
| Msa0366010 | MtrunA17_Chr7g0273781 | 27.679 | 336 | 226 | 7 | 19 | 350 | 50 | 372 | 9.52e-27 | 112 |
| Msa0366010 | MtrunA17_Chr5g0433641 | 26.496 | 351 | 240 | 7 | 6 | 351 | 4 | 341 | 2.70e-26 | 110 |
| Msa0366010 | MtrunA17_Chr7g0273791 | 26.203 | 374 | 249 | 11 | 6 | 371 | 4 | 358 | 2.47e-24 | 105 |
| Msa0366010 | MtrunA17_Chr7g0273731 | 25.266 | 376 | 250 | 10 | 6 | 371 | 87 | 441 | 3.55e-24 | 105 |
| Msa0366010 | MtrunA17_Chr8g0371821 | 27.147 | 361 | 247 | 10 | 12 | 371 | 3 | 348 | 4.70e-24 | 103 |
| Msa0366010 | MtrunA17_Chr3g0141851 | 24.819 | 415 | 250 | 13 | 15 | 406 | 15 | 390 | 5.39e-24 | 104 |
| Msa0366010 | MtrunA17_Chr7g0273721 | 26.346 | 353 | 237 | 11 | 6 | 350 | 5 | 342 | 8.02e-23 | 100 |
| Msa0366010 | MtrunA17_Chr3g0087401 | 25.183 | 409 | 254 | 17 | 20 | 409 | 10 | 385 | 8.20e-23 | 100 |
| Msa0366010 | MtrunA17_Chr2g0334001 | 26.301 | 365 | 238 | 13 | 12 | 367 | 3 | 345 | 1.63e-22 | 99.8 |
| Msa0366010 | MtrunA17_Chr1g0165711 | 27.974 | 311 | 194 | 9 | 19 | 321 | 16 | 304 | 2.75e-22 | 99.0 |
| Msa0366010 | MtrunA17_Chr4g0001861 | 26.738 | 374 | 226 | 14 | 12 | 367 | 3 | 346 | 1.32e-21 | 97.1 |
| Msa0366010 | MtrunA17_Chr4g0054081 | 27.119 | 354 | 222 | 12 | 12 | 349 | 9 | 342 | 1.21e-20 | 94.4 |
| Msa0366010 | MtrunA17_Chr4g0072041 | 27.966 | 354 | 220 | 13 | 11 | 349 | 13 | 346 | 1.36e-20 | 94.4 |
| Msa0366010 | MtrunA17_Chr7g0253541 | 26.301 | 365 | 231 | 13 | 20 | 361 | 12 | 361 | 2.43e-18 | 87.4 |
| Msa0366010 | MtrunA17_Chr7g0253501 | 26.667 | 375 | 235 | 18 | 19 | 371 | 9 | 365 | 3.63e-18 | 86.7 |
| Msa0366010 | MtrunA17_Chr7g0235531 | 23.858 | 394 | 250 | 15 | 11 | 376 | 3 | 374 | 3.88e-14 | 74.3 |
| Msa0366010 | MtrunA17_Chr2g0311401 | 24.201 | 219 | 149 | 5 | 156 | 367 | 7 | 215 | 1.60e-13 | 71.2 |
| Msa0366010 | MtrunA17_Chr6g0471971 | 28.042 | 189 | 116 | 7 | 170 | 350 | 1 | 177 | 1.88e-12 | 66.6 |
| Msa0366010 | MtrunA17_Chr7g0252731 | 25.740 | 338 | 206 | 13 | 9 | 327 | 14 | 325 | 3.20e-11 | 65.1 |
| Msa0366010 | MtrunA17_Chr3g0134091 | 25.887 | 282 | 176 | 9 | 70 | 336 | 68 | 331 | 6.08e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366010 | AT5G07080.1 | 37.953 | 469 | 252 | 13 | 6 | 463 | 8 | 448 | 1.64e-87 | 275 |
| Msa0366010 | AT2G25150.1 | 37.632 | 473 | 266 | 13 | 1 | 464 | 1 | 453 | 3.31e-84 | 267 |
| Msa0366010 | AT2G23510.1 | 37.694 | 451 | 255 | 12 | 19 | 463 | 20 | 450 | 2.99e-82 | 261 |
| Msa0366010 | AT3G47170.1 | 35.244 | 471 | 269 | 11 | 12 | 463 | 12 | 465 | 1.10e-76 | 248 |
| Msa0366010 | AT1G28680.1 | 33.974 | 468 | 277 | 15 | 12 | 470 | 4 | 448 | 7.59e-71 | 232 |
| Msa0366010 | AT1G28680.2 | 36.193 | 373 | 213 | 12 | 12 | 375 | 4 | 360 | 3.69e-61 | 205 |
| Msa0366010 | AT3G62160.1 | 30.499 | 341 | 204 | 10 | 18 | 351 | 11 | 325 | 1.19e-36 | 140 |
| Msa0366010 | AT5G41040.2 | 28.912 | 377 | 230 | 15 | 8 | 370 | 13 | 365 | 1.01e-34 | 135 |
| Msa0366010 | AT5G41040.1 | 28.912 | 377 | 230 | 15 | 8 | 370 | 29 | 381 | 1.55e-34 | 135 |
| Msa0366010 | AT3G03480.1 | 26.522 | 460 | 308 | 12 | 8 | 463 | 15 | 448 | 1.01e-29 | 121 |
| Msa0366010 | AT5G17540.1 | 28.375 | 363 | 229 | 12 | 8 | 359 | 5 | 347 | 1.12e-29 | 121 |
| Msa0366010 | AT2G40230.1 | 28.061 | 392 | 258 | 11 | 12 | 397 | 5 | 378 | 5.26e-28 | 115 |
| Msa0366010 | AT3G48720.1 | 27.397 | 365 | 235 | 14 | 15 | 370 | 12 | 355 | 2.37e-27 | 114 |
| Msa0366010 | AT1G03390.1 | 26.291 | 426 | 253 | 16 | 8 | 409 | 13 | 401 | 3.49e-27 | 114 |
| Msa0366010 | AT5G48930.1 | 27.717 | 368 | 242 | 14 | 10 | 371 | 1 | 350 | 3.83e-26 | 110 |
| Msa0366010 | AT5G63560.1 | 27.419 | 372 | 236 | 14 | 8 | 370 | 5 | 351 | 1.44e-24 | 105 |
| Msa0366010 | AT1G24430.1 | 28.527 | 319 | 190 | 15 | 8 | 320 | 1 | 287 | 6.25e-21 | 95.5 |
| Msa0366010 | AT2G19070.1 | 27.049 | 366 | 237 | 14 | 20 | 372 | 12 | 360 | 1.31e-20 | 94.7 |
| Msa0366010 | AT5G57840.1 | 27.568 | 370 | 234 | 18 | 10 | 367 | 1 | 348 | 1.10e-18 | 88.6 |
| Msa0366010 | AT1G65450.1 | 27.083 | 384 | 239 | 16 | 2 | 364 | 4 | 367 | 1.53e-18 | 88.2 |
Find 95 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTTACCTAAAGGGTATTA+TGG | 0.159161 | 3_1:-60415493 | Msa0366010:CDS |
| ACAAATTATGATTCTGATTC+AGG | 0.171328 | 3_1:-60417306 | Msa0366010:CDS |
| TCATTTCTAGCTTTAGGTTT+AGG | 0.176003 | 3_1:+60417451 | None:intergenic |
| TATCTTTATTCTATTTAAAA+TGG | 0.181601 | 3_1:+60414915 | None:intergenic |
| CATTTCTAGCTTTAGGTTTA+GGG | 0.192317 | 3_1:+60417452 | None:intergenic |
| TTGCTCTGAAGATTTGTAAT+TGG | 0.242943 | 3_1:+60415890 | None:intergenic |
| CCTTTCTTCTCTTCATTACT+TGG | 0.251953 | 3_1:-60416067 | Msa0366010:CDS |
| TCATGATCATCAAGTTTATT+AGG | 0.262038 | 3_1:+60415145 | None:intergenic |
| CATCTTTCATTTCTAGCTTT+AGG | 0.271621 | 3_1:+60417445 | None:intergenic |
| GATTATTATTATCCTCTTGC+AGG | 0.285447 | 3_1:-60417237 | Msa0366010:intron |
| AAGTTACCCTTTGGTATTCA+TGG | 0.294628 | 3_1:-60415983 | Msa0366010:CDS |
| TCTAAATGAGTTGAGACATT+TGG | 0.312348 | 3_1:-60415269 | Msa0366010:CDS |
| CTTTGTGGCGGTTTCACAAT+TGG | 0.320034 | 3_1:-60415949 | Msa0366010:CDS |
| CACAAACTCAATAAACTCTT+TGG | 0.322202 | 3_1:-60415350 | Msa0366010:CDS |
| GGTGTTGGTGGTGCAGAATA+TGG | 0.338152 | 3_1:-60416123 | Msa0366010:CDS |
| CTAAATGAGTTGAGACATTT+GGG | 0.339324 | 3_1:-60415268 | Msa0366010:CDS |
| GAATTCCCATAATACCCTTT+AGG | 0.340816 | 3_1:+60415487 | None:intergenic |
| AGGACGAAATTGAAGCCTTA+AGG | 0.347234 | 3_1:-60415057 | Msa0366010:CDS |
| CTTTACCTAAAGGGTATTAT+GGG | 0.352647 | 3_1:-60415492 | Msa0366010:CDS |
| TGCAATTAGCATATGCTTCT+AGG | 0.353944 | 3_1:+60416091 | None:intergenic |
| GGCGGTTTCACAATTGGAAT+GGG | 0.359194 | 3_1:-60415943 | Msa0366010:CDS |
| CATGCTATTTGTGACGCATT+TGG | 0.383718 | 3_1:-60415913 | Msa0366010:CDS |
| TTCAGAGCAATTGTTGAACT+TGG | 0.384460 | 3_1:-60415877 | Msa0366010:CDS |
| AACTTAGGCATAGCAGCAAC+AGG | 0.385326 | 3_1:+60415082 | None:intergenic |
| AGAAGCGGTCTCAAAGGCTT+TGG | 0.391560 | 3_1:-60417259 | Msa0366010:CDS |
| ACAACATTTGAAGTGCTTGC+AGG | 0.408069 | 3_1:-60415619 | Msa0366010:CDS |
| ATTATGATACTTTACCTAAA+GGG | 0.409088 | 3_1:-60415501 | Msa0366010:CDS |
| TGCTGCTATGCCTAAGTTCA+AGG | 0.415385 | 3_1:-60415077 | Msa0366010:CDS |
| TGCTTTCTGATACGCCATAA+TGG | 0.415397 | 3_1:+60417476 | None:intergenic |
| GCTTGATATTCCTTCTCCTA+TGG | 0.424499 | 3_1:-60416010 | Msa0366010:CDS |
| GTTTCATCACTCGAAGTTGT+AGG | 0.426819 | 3_1:-60415035 | Msa0366010:exon |
| TATGGATAAAAGTTACCCTT+TGG | 0.431832 | 3_1:-60415992 | Msa0366010:CDS |
| TGTCAATGGAAGGAGGAGTT+AGG | 0.442569 | 3_1:-60415120 | Msa0366010:CDS |
| GTGAAAATGCAACAGATTCT+CGG | 0.449271 | 3_1:+60415758 | None:intergenic |
| GGAAGACTTAGAGTCGAGTT+TGG | 0.454551 | 3_1:-60416144 | Msa0366010:CDS |
| TCAATTTCGTCCTTGAACTT+AGG | 0.455514 | 3_1:+60415067 | None:intergenic |
| TGGCGGTTTCACAATTGGAA+TGG | 0.467227 | 3_1:-60415944 | Msa0366010:CDS |
| TCCCACACAGGTTTCACTGA+TGG | 0.471401 | 3_1:+60415838 | None:intergenic |
| TGCAACAGATTCTCGGTCAG+TGG | 0.476338 | 3_1:+60415765 | None:intergenic |
| CCAAGCATCTTGCATGGTGC+AGG | 0.480198 | 3_1:+60415196 | None:intergenic |
| AAGTTGCGTCTAATACCAAC+TGG | 0.480983 | 3_1:+60415529 | None:intergenic |
| CTTCGAGTGATGAAACCTTA+AGG | 0.484061 | 3_1:+60415042 | None:intergenic |
| GATTATGATACTTTACCTAA+AGG | 0.489847 | 3_1:-60415502 | Msa0366010:CDS |
| CCAAGTAATGAAGAGAAGAA+AGG | 0.491172 | 3_1:+60416067 | None:intergenic |
| TGGTATTAGACGCAACTTGA+AGG | 0.491366 | 3_1:-60415524 | Msa0366010:CDS |
| AATCATAATTTGTTGATGAC+CGG | 0.501495 | 3_1:+60417316 | None:intergenic |
| TTGGAGACGAATCAAGAAGA+TGG | 0.503936 | 3_1:-60415331 | Msa0366010:CDS |
| CTCGGTCAGTGGGACATTGT+GGG | 0.504074 | 3_1:+60415776 | None:intergenic |
| AACATGGAATTGGAAGATAG+TGG | 0.504909 | 3_1:-60415304 | Msa0366010:CDS |
| GCAATTGTTGAACTTGGAAG+AGG | 0.508018 | 3_1:-60415871 | Msa0366010:CDS |
| CAAGTAATGAAGAGAAGAAA+GGG | 0.508480 | 3_1:+60416068 | None:intergenic |
| TTAGCATATGCTTCTAGGAA+TGG | 0.521867 | 3_1:+60416096 | None:intergenic |
| CTTAGAGTCGAGTTTGGTGT+TGG | 0.525295 | 3_1:-60416138 | Msa0366010:CDS |
| TCTCGGTCAGTGGGACATTG+TGG | 0.526038 | 3_1:+60415775 | None:intergenic |
| CCTGCACCATGCAAGATGCT+TGG | 0.531684 | 3_1:-60415196 | Msa0366010:CDS |
| AGCTTAACAATTTCATAGAG+TGG | 0.539783 | 3_1:+60415415 | None:intergenic |
| ATTTCTAGCTTTAGGTTTAG+GGG | 0.543168 | 3_1:+60417453 | None:intergenic |
| ATGGTGACAAAATTTCTTTG+TGG | 0.543302 | 3_1:-60415964 | Msa0366010:CDS |
| GGAAGATAGTGGTGCAGTAA+CGG | 0.543611 | 3_1:-60415293 | Msa0366010:CDS |
| CACAGAAATTGCAAAAGACT+TGG | 0.546007 | 3_1:-60416034 | Msa0366010:CDS |
| GACAGAGAAAGAATACAAGA+AGG | 0.550104 | 3_1:+60417393 | None:intergenic |
| AGAGTCGAGTTTGGTGTTGG+TGG | 0.551439 | 3_1:-60416135 | Msa0366010:CDS |
| TTGTCACCATGAATACCAAA+GGG | 0.551952 | 3_1:+60415977 | None:intergenic |
| GCGGTTTCACAATTGGAATG+GGG | 0.553602 | 3_1:-60415942 | Msa0366010:CDS |
| TGATGATCATGATCTGTCAA+TGG | 0.555180 | 3_1:-60415134 | Msa0366010:CDS |
| GCCTTAAAACTTAACAGCAA+TGG | 0.564131 | 3_1:-60415571 | Msa0366010:CDS |
| TTTGTCACCATGAATACCAA+AGG | 0.565547 | 3_1:+60415976 | None:intergenic |
| TCAGTGGGACATTGTGGGAA+AGG | 0.570113 | 3_1:+60415781 | None:intergenic |
| TTTACAAGTATACCTGCAAG+AGG | 0.571753 | 3_1:+60417225 | None:intergenic |
| AAGTGCTTGCAGGTTATGTG+TGG | 0.575180 | 3_1:-60415609 | Msa0366010:CDS |
| CTAGTGAAACATGCTGGTGA+TGG | 0.577908 | 3_1:-60416165 | Msa0366010:CDS |
| CAAGAAGGAATAGACTTGGA+TGG | 0.586286 | 3_1:+60417408 | None:intergenic |
| GCGTCTAATACCAACTGGAA+TGG | 0.590884 | 3_1:+60415534 | None:intergenic |
| GCAACAGATTCTCGGTCAGT+GGG | 0.591813 | 3_1:+60415766 | None:intergenic |
| ATTCAAAGAAGCGGTCTCAA+AGG | 0.594281 | 3_1:-60417265 | Msa0366010:CDS |
| AATACAAGAAGGAATAGACT+TGG | 0.595657 | 3_1:+60417404 | None:intergenic |
| GTGACAAAATTTCTTTGTGG+CGG | 0.608273 | 3_1:-60415961 | Msa0366010:CDS |
| ATGAGAAAATACACGTATCG+AGG | 0.609004 | 3_1:+60415170 | None:intergenic |
| CGGTTTCACAATTGGAATGG+GGG | 0.610007 | 3_1:-60415941 | Msa0366010:CDS |
| GGTAGACTAGTGAAACATGC+TGG | 0.615068 | 3_1:-60416171 | Msa0366010:CDS |
| TTGTCATGTATTCAAAGAAG+CGG | 0.616564 | 3_1:-60417274 | Msa0366010:CDS |
| GTTTGTGACATAATCAGCAG+TGG | 0.618396 | 3_1:+60415366 | None:intergenic |
| TGCTTGCAGGTTATGTGTGG+AGG | 0.634525 | 3_1:-60415606 | Msa0366010:CDS |
| TCATGCATGCACCTTGAGTG+TGG | 0.639514 | 3_1:+60415008 | None:intergenic |
| GCTTCTTTGAATACATGACA+AGG | 0.645628 | 3_1:+60417276 | None:intergenic |
| TGAGAAAATACACGTATCGA+GGG | 0.645992 | 3_1:+60415171 | None:intergenic |
| TTGTAGGAGATCCACACTCA+AGG | 0.647524 | 3_1:-60415019 | Msa0366010:exon |
| GATCATGATCTGTCAATGGA+AGG | 0.648767 | 3_1:-60415130 | Msa0366010:CDS |
| AGGGTGCCAAGCATCTTGCA+TGG | 0.649943 | 3_1:+60415190 | None:intergenic |
| CATGATCTGTCAATGGAAGG+AGG | 0.651977 | 3_1:-60415127 | Msa0366010:CDS |
| ACAGTGTTGACCATTCCAGT+TGG | 0.658221 | 3_1:-60415544 | Msa0366010:CDS |
| ACTTAGGCATAGCAGCAACA+GGG | 0.673752 | 3_1:+60415083 | None:intergenic |
| CTTCTTTGAATACATGACAA+GGG | 0.683868 | 3_1:+60417277 | None:intergenic |
| AGCCATCAGTGAAACCTGTG+TGG | 0.685980 | 3_1:-60415840 | Msa0366010:CDS |
| GCCATCAGTGAAACCTGTGT+GGG | 0.717270 | 3_1:-60415839 | Msa0366010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAATAAAAATGAAAATATA+AGG | - | chr3_1:60416732-60416751 | Msa0366010:intron | 10.0% |
| !! | TATCTTTATTCTATTTAAAA+TGG | + | chr3_1:60417465-60417484 | None:intergenic | 10.0% |
| !!! | ATTTTAAATAGAATAAAGAT+AGG | - | chr3_1:60417464-60417483 | Msa0366010:CDS | 10.0% |
| !! | AATAAATATCATGGTTAATT+CGG | + | chr3_1:60415342-60415361 | None:intergenic | 15.0% |
| !!! | TTAATTTTTTGTTACATTGT+TGG | + | chr3_1:60415374-60415393 | None:intergenic | 15.0% |
| !! | AATTGATAAAGGAAAAAAAT+TGG | - | chr3_1:60415516-60415535 | Msa0366010:CDS | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | + | chr3_1:60415951-60415970 | None:intergenic | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | + | chr3_1:60415950-60415969 | None:intergenic | 15.0% |
| !!! | TTGAAACTTTTAAAACATAA+GGG | + | chr3_1:60415632-60415651 | None:intergenic | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | - | chr3_1:60415950-60415969 | Msa0366010:CDS | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | - | chr3_1:60415951-60415970 | Msa0366010:CDS | 15.0% |
| !!! | ATATTATTTTGATTCACAAA+GGG | + | chr3_1:60416644-60416663 | None:intergenic | 15.0% |
| !!! | AATATTATTTTGATTCACAA+AGG | + | chr3_1:60416645-60416664 | None:intergenic | 15.0% |
| !! | TATAATGATTAGCAAAAACA+CGG | - | chr3_1:60415185-60415204 | Msa0366010:CDS | 20.0% |
| !! | TGTCATTGAAATAAATATCA+TGG | + | chr3_1:60415351-60415370 | None:intergenic | 20.0% |
| !!! | ATTACAGAAAATGTTGTTTA+AGG | - | chr3_1:60415433-60415452 | Msa0366010:CDS | 20.0% |
| !!! | TTACAGAAAATGTTGTTTAA+GGG | - | chr3_1:60415434-60415453 | Msa0366010:CDS | 20.0% |
| !! | GTTACACTTTAAATTGATAA+AGG | - | chr3_1:60415505-60415524 | Msa0366010:CDS | 20.0% |
| !!! | TGTTTGTTACACTTTATTTT+AGG | - | chr3_1:60415557-60415576 | Msa0366010:CDS | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | - | chr3_1:60415605-60415624 | Msa0366010:CDS | 20.0% |
| !!! | CTTGAAACTTTTAAAACATA+AGG | + | chr3_1:60415633-60415652 | None:intergenic | 20.0% |
| !!! | ATGTTTTAAAAGTTTCAAGT+TGG | - | chr3_1:60415634-60415653 | Msa0366010:CDS | 20.0% |
| !!! | TTGAAACTTTTAAAACGTAA+GGG | + | chr3_1:60415661-60415680 | None:intergenic | 20.0% |
| !!! | TTTGAAACTTTTAAAACGTA+AGG | + | chr3_1:60415662-60415681 | None:intergenic | 20.0% |
| !!! | ACGTTTTAAAAGTTTCAAAT+TGG | - | chr3_1:60415663-60415682 | Msa0366010:CDS | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | + | chr3_1:60415605-60415624 | None:intergenic | 20.0% |
| !! | CAATTCAAATGCTAAAATAA+AGG | + | chr3_1:60415990-60416009 | None:intergenic | 20.0% |
| !! | TTATTTGTATTGAAAGTTGA+TGG | - | chr3_1:60416034-60416053 | Msa0366010:CDS | 20.0% |
| !!! | CAATATTGTTTTAAAGTAGA+GGG | - | chr3_1:60416677-60416696 | Msa0366010:intron | 20.0% |
| !! | ATTATGATACTTTACCTAAA+GGG | - | chr3_1:60416876-60416895 | Msa0366010:intron | 20.0% |
| !!! | CAGGAAAATATAATTTTTGA+AGG | - | chr3_1:60417136-60417155 | Msa0366010:intron | 20.0% |
| !! | TTTCTCATCATTTTCCATTA+TGG | - | chr3_1:60414887-60414906 | Msa0366010:three_prime_UTR | 25.0% |
| !!! | AATCATAATTTGTTGATGAC+CGG | + | chr3_1:60415064-60415083 | None:intergenic | 25.0% |
| ! | ACAAATTATGATTCTGATTC+AGG | - | chr3_1:60415071-60415090 | Msa0366010:CDS | 25.0% |
| ! | TCTGTAATAAAGATTGTTGT+TGG | + | chr3_1:60415421-60415440 | None:intergenic | 25.0% |
| ! | TTAAAATCAATATCATGTCG+CGG | + | chr3_1:60415727-60415746 | None:intergenic | 25.0% |
| ! | TCACTTAAATTTAAAGATCC+GGG | + | chr3_1:60415825-60415844 | None:intergenic | 25.0% |
| ! | GTCACTTAAATTTAAAGATC+CGG | + | chr3_1:60415826-60415845 | None:intergenic | 25.0% |
| ! | GGATCTTTAAATTTAAGTGA+CGG | - | chr3_1:60415825-60415844 | Msa0366010:CDS | 25.0% |
| ! | TTGAAACTTGTAAAACGTAA+GGG | - | chr3_1:60415891-60415910 | Msa0366010:CDS | 25.0% |
| !!! | ATGTTTTAAAAGTTCCAAGT+TGG | + | chr3_1:60415918-60415937 | None:intergenic | 25.0% |
| !!! | TTGGAACTTTTAAAACATGA+AGG | - | chr3_1:60415920-60415939 | Msa0366010:CDS | 25.0% |
| !!! | ATAACTGCTTTCAGTTTTTT+GGG | + | chr3_1:60416085-60416104 | None:intergenic | 25.0% |
| !!! | AATAACTGCTTTCAGTTTTT+TGG | + | chr3_1:60416086-60416105 | None:intergenic | 25.0% |
| !!! | GCAATATTGTTTTAAAGTAG+AGG | - | chr3_1:60416676-60416695 | Msa0366010:intron | 25.0% |
| ! | GATTATGATACTTTACCTAA+AGG | - | chr3_1:60416875-60416894 | Msa0366010:intron | 25.0% |
| ! | TCATGATCATCAAGTTTATT+AGG | + | chr3_1:60417235-60417254 | None:intergenic | 25.0% |
| !! | ATTTCTAGCTTTAGGTTTAG+GGG | + | chr3_1:60414927-60414946 | None:intergenic | 30.0% |
| !! | CATTTCTAGCTTTAGGTTTA+GGG | + | chr3_1:60414928-60414947 | None:intergenic | 30.0% |
| !! | TCATTTCTAGCTTTAGGTTT+AGG | + | chr3_1:60414929-60414948 | None:intergenic | 30.0% |
| !! | CATCTTTCATTTCTAGCTTT+AGG | + | chr3_1:60414935-60414954 | None:intergenic | 30.0% |
| AATACAAGAAGGAATAGACT+TGG | + | chr3_1:60414976-60414995 | None:intergenic | 30.0% | |
| !! | GTCATTTTGTTCATGTATAC+CGG | - | chr3_1:60415042-60415061 | Msa0366010:CDS | 30.0% |
| CTTCTTTGAATACATGACAA+GGG | + | chr3_1:60415103-60415122 | None:intergenic | 30.0% | |
| TTGTCATGTATTCAAAGAAG+CGG | - | chr3_1:60415103-60415122 | Msa0366010:CDS | 30.0% | |
| GATTATTATTATCCTCTTGC+AGG | - | chr3_1:60415140-60415159 | Msa0366010:CDS | 30.0% | |
| TTCTAACATGAGTAACGTTT+AGG | - | chr3_1:60415862-60415881 | Msa0366010:CDS | 30.0% | |
| !! | ACGTTTTACAAGTTTCAAGT+TGG | + | chr3_1:60415889-60415908 | None:intergenic | 30.0% |
| CTTGAAACTTGTAAAACGTA+AGG | - | chr3_1:60415890-60415909 | Msa0366010:CDS | 30.0% | |
| CAAGTAATGAAGAGAAGAAA+GGG | + | chr3_1:60416312-60416331 | None:intergenic | 30.0% | |
| ! | TAACTTTTATCCATAGGAGA+AGG | + | chr3_1:60416380-60416399 | None:intergenic | 30.0% |
| ! | AAAGGGTAACTTTTATCCAT+AGG | + | chr3_1:60416386-60416405 | None:intergenic | 30.0% |
| TATGGATAAAAGTTACCCTT+TGG | - | chr3_1:60416385-60416404 | Msa0366010:intron | 30.0% | |
| ATGGTGACAAAATTTCTTTG+TGG | - | chr3_1:60416413-60416432 | Msa0366010:intron | 30.0% | |
| !! | TTGCTCTGAAGATTTGTAAT+TGG | + | chr3_1:60416490-60416509 | None:intergenic | 30.0% |
| !! | ACCATTGCTGTTAAGTTTTA+AGG | + | chr3_1:60416810-60416829 | None:intergenic | 30.0% |
| !! | ACTTTACCTAAAGGGTATTA+TGG | - | chr3_1:60416884-60416903 | Msa0366010:intron | 30.0% |
| !! | CTTTACCTAAAGGGTATTAT+GGG | - | chr3_1:60416885-60416904 | Msa0366010:intron | 30.0% |
| AGCTTAACAATTTCATAGAG+TGG | + | chr3_1:60416965-60416984 | None:intergenic | 30.0% | |
| CACAAACTCAATAAACTCTT+TGG | - | chr3_1:60417027-60417046 | Msa0366010:intron | 30.0% | |
| !!! | TCAAGAAGATGGTTTTAACA+TGG | - | chr3_1:60417057-60417076 | Msa0366010:intron | 30.0% |
| !!! | AGATGGTTTTAACATGGAAT+TGG | - | chr3_1:60417063-60417082 | Msa0366010:intron | 30.0% |
| ! | TCTAAATGAGTTGAGACATT+TGG | - | chr3_1:60417108-60417127 | Msa0366010:intron | 30.0% |
| ! | CTAAATGAGTTGAGACATTT+GGG | - | chr3_1:60417109-60417128 | Msa0366010:intron | 30.0% |
| GACAGAGAAAGAATACAAGA+AGG | + | chr3_1:60414987-60415006 | None:intergenic | 35.0% | |
| GCTTCTTTGAATACATGACA+AGG | + | chr3_1:60415104-60415123 | None:intergenic | 35.0% | |
| TTTACAAGTATACCTGCAAG+AGG | + | chr3_1:60415155-60415174 | None:intergenic | 35.0% | |
| AATAAAAAGAGCGGAAAGAC+GGG | + | chr3_1:60415222-60415241 | None:intergenic | 35.0% | |
| CAATAAAAAGAGCGGAAAGA+CGG | + | chr3_1:60415223-60415242 | None:intergenic | 35.0% | |
| CGTTGTCACAATAAAAAGAG+CGG | + | chr3_1:60415231-60415250 | None:intergenic | 35.0% | |
| ! | TTAGCATATGCTTCTAGGAA+TGG | + | chr3_1:60416284-60416303 | None:intergenic | 35.0% |
| TGCAATTAGCATATGCTTCT+AGG | + | chr3_1:60416289-60416308 | None:intergenic | 35.0% | |
| CCAAGTAATGAAGAGAAGAA+AGG | + | chr3_1:60416313-60416332 | None:intergenic | 35.0% | |
| CCTTTCTTCTCTTCATTACT+TGG | - | chr3_1:60416310-60416329 | Msa0366010:intron | 35.0% | |
| CACAGAAATTGCAAAAGACT+TGG | - | chr3_1:60416343-60416362 | Msa0366010:intron | 35.0% | |
| AAGTTACCCTTTGGTATTCA+TGG | - | chr3_1:60416394-60416413 | Msa0366010:intron | 35.0% | |
| TTGTCACCATGAATACCAAA+GGG | + | chr3_1:60416403-60416422 | None:intergenic | 35.0% | |
| TTTGTCACCATGAATACCAA+AGG | + | chr3_1:60416404-60416423 | None:intergenic | 35.0% | |
| GTGACAAAATTTCTTTGTGG+CGG | - | chr3_1:60416416-60416435 | Msa0366010:intron | 35.0% | |
| TTCAGAGCAATTGTTGAACT+TGG | - | chr3_1:60416500-60416519 | Msa0366010:intron | 35.0% | |
| TGGGAAAGAGAAAAACAAGT+TGG | - | chr3_1:60416557-60416576 | Msa0366010:intron | 35.0% | |
| GTGAAAATGCAACAGATTCT+CGG | + | chr3_1:60416622-60416641 | None:intergenic | 35.0% | |
| GCCTTAAAACTTAACAGCAA+TGG | - | chr3_1:60416806-60416825 | Msa0366010:intron | 35.0% | |
| GAATTCCCATAATACCCTTT+AGG | + | chr3_1:60416893-60416912 | None:intergenic | 35.0% | |
| AACATGGAATTGGAAGATAG+TGG | - | chr3_1:60417073-60417092 | Msa0366010:intron | 35.0% | |
| TGAGAAAATACACGTATCGA+GGG | + | chr3_1:60417209-60417228 | None:intergenic | 35.0% | |
| ATGAGAAAATACACGTATCG+AGG | + | chr3_1:60417210-60417229 | None:intergenic | 35.0% | |
| TGATGATCATGATCTGTCAA+TGG | - | chr3_1:60417243-60417262 | Msa0366010:CDS | 35.0% | |
| TCAATTTCGTCCTTGAACTT+AGG | + | chr3_1:60417313-60417332 | None:intergenic | 35.0% | |
| TGCTTTCTGATACGCCATAA+TGG | + | chr3_1:60414904-60414923 | None:intergenic | 40.0% | |
| CAAGAAGGAATAGACTTGGA+TGG | + | chr3_1:60414972-60414991 | None:intergenic | 40.0% | |
| ATTCAAAGAAGCGGTCTCAA+AGG | - | chr3_1:60415112-60415131 | Msa0366010:CDS | 40.0% | |
| ! | TTCCAACGTGAGTAACGTTT+TGG | + | chr3_1:60415690-60415709 | None:intergenic | 40.0% |
| ATCAATATCATGTCGCGGAA+GGG | + | chr3_1:60415722-60415741 | None:intergenic | 40.0% | |
| AATCAATATCATGTCGCGGA+AGG | + | chr3_1:60415723-60415742 | None:intergenic | 40.0% | |
| ! | AAGATCCGGGTTGACAATAT+GGG | + | chr3_1:60415812-60415831 | None:intergenic | 40.0% |
| ! | AAAGATCCGGGTTGACAATA+TGG | + | chr3_1:60415813-60415832 | None:intergenic | 40.0% |
| TAAAACGTAAGGGACCAACT+TGG | - | chr3_1:60415901-60415920 | Msa0366010:CDS | 40.0% | |
| !!! | CTGCTTTCAGTTTTTTGGGT+TGG | + | chr3_1:60416081-60416100 | None:intergenic | 40.0% |
| !! | GAAGTGAGATGTTGGTTTAG+TGG | + | chr3_1:60416178-60416197 | None:intergenic | 40.0% |
| ! | CATGTTTCACTAGTCTACCT+GGG | + | chr3_1:60416205-60416224 | None:intergenic | 40.0% |
| GCTTGATATTCCTTCTCCTA+TGG | - | chr3_1:60416367-60416386 | Msa0366010:intron | 40.0% | |
| ! | CATGCTATTTGTGACGCATT+TGG | - | chr3_1:60416464-60416483 | Msa0366010:intron | 40.0% |
| GCAATTGTTGAACTTGGAAG+AGG | - | chr3_1:60416506-60416525 | Msa0366010:intron | 40.0% | |
| ! | TGTTTTTCTCTTTCCCACAC+AGG | + | chr3_1:60416554-60416573 | None:intergenic | 40.0% |
| ! | ACAACATTTGAAGTGCTTGC+AGG | - | chr3_1:60416758-60416777 | Msa0366010:intron | 40.0% |
| AAGTTGCGTCTAATACCAAC+TGG | + | chr3_1:60416851-60416870 | None:intergenic | 40.0% | |
| TGGTATTAGACGCAACTTGA+AGG | - | chr3_1:60416853-60416872 | Msa0366010:intron | 40.0% | |
| GTTTGTGACATAATCAGCAG+TGG | + | chr3_1:60417014-60417033 | None:intergenic | 40.0% | |
| TTGGAGACGAATCAAGAAGA+TGG | - | chr3_1:60417046-60417065 | Msa0366010:intron | 40.0% | |
| !! | GTTGAGACATTTGGGTTTTC+AGG | - | chr3_1:60417117-60417136 | Msa0366010:intron | 40.0% |
| GATCATGATCTGTCAATGGA+AGG | - | chr3_1:60417247-60417266 | Msa0366010:CDS | 40.0% | |
| AGGACGAAATTGAAGCCTTA+AGG | - | chr3_1:60417320-60417339 | Msa0366010:CDS | 40.0% | |
| CTTCGAGTGATGAAACCTTA+AGG | + | chr3_1:60417338-60417357 | None:intergenic | 40.0% | |
| GTTTCATCACTCGAAGTTGT+AGG | - | chr3_1:60417342-60417361 | Msa0366010:CDS | 40.0% | |
| GTCCAAAACGTTACTCACGT+TGG | - | chr3_1:60415685-60415704 | Msa0366010:CDS | 45.0% | |
| CATCACCCATATTGTCAACC+CGG | - | chr3_1:60415804-60415823 | Msa0366010:CDS | 45.0% | |
| TGGGAAACGAAGTGAGATGT+TGG | + | chr3_1:60416186-60416205 | None:intergenic | 45.0% | |
| AACATCTCACTTCGTTTCCC+AGG | - | chr3_1:60416185-60416204 | Msa0366010:intron | 45.0% | |
| ! | GCATGTTTCACTAGTCTACC+TGG | + | chr3_1:60416206-60416225 | None:intergenic | 45.0% |
| GGTAGACTAGTGAAACATGC+TGG | - | chr3_1:60416206-60416225 | Msa0366010:intron | 45.0% | |
| CTAGTGAAACATGCTGGTGA+TGG | - | chr3_1:60416212-60416231 | Msa0366010:intron | 45.0% | |
| GGAAGACTTAGAGTCGAGTT+TGG | - | chr3_1:60416233-60416252 | Msa0366010:intron | 45.0% | |
| !! | CTTAGAGTCGAGTTTGGTGT+TGG | - | chr3_1:60416239-60416258 | Msa0366010:intron | 45.0% |
| CTTTGTGGCGGTTTCACAAT+TGG | - | chr3_1:60416428-60416447 | Msa0366010:intron | 45.0% | |
| TGGCGGTTTCACAATTGGAA+TGG | - | chr3_1:60416433-60416452 | Msa0366010:intron | 45.0% | |
| GGCGGTTTCACAATTGGAAT+GGG | - | chr3_1:60416434-60416453 | Msa0366010:intron | 45.0% | |
| GCGGTTTCACAATTGGAATG+GGG | - | chr3_1:60416435-60416454 | Msa0366010:intron | 45.0% | |
| CGGTTTCACAATTGGAATGG+GGG | - | chr3_1:60416436-60416455 | Msa0366010:intron | 45.0% | |
| AAGTGCTTGCAGGTTATGTG+TGG | - | chr3_1:60416768-60416787 | Msa0366010:intron | 45.0% | |
| !! | ACAGTGTTGACCATTCCAGT+TGG | - | chr3_1:60416833-60416852 | Msa0366010:intron | 45.0% |
| GCGTCTAATACCAACTGGAA+TGG | + | chr3_1:60416846-60416865 | None:intergenic | 45.0% | |
| ! | GGAAGATAGTGGTGCAGTAA+CGG | - | chr3_1:60417084-60417103 | Msa0366010:intron | 45.0% |
| CATGATCTGTCAATGGAAGG+AGG | - | chr3_1:60417250-60417269 | Msa0366010:CDS | 45.0% | |
| TGTCAATGGAAGGAGGAGTT+AGG | - | chr3_1:60417257-60417276 | Msa0366010:CDS | 45.0% | |
| ACTTAGGCATAGCAGCAACA+GGG | + | chr3_1:60417297-60417316 | None:intergenic | 45.0% | |
| AACTTAGGCATAGCAGCAAC+AGG | + | chr3_1:60417298-60417317 | None:intergenic | 45.0% | |
| TGCTGCTATGCCTAAGTTCA+AGG | - | chr3_1:60417300-60417319 | Msa0366010:CDS | 45.0% | |
| TTGTAGGAGATCCACACTCA+AGG | - | chr3_1:60417358-60417377 | Msa0366010:CDS | 45.0% | |
| AGAAGCGGTCTCAAAGGCTT+TGG | - | chr3_1:60415118-60415137 | Msa0366010:CDS | 50.0% | |
| ! | CGGGTTGACAATATGGGTGA+TGG | + | chr3_1:60415806-60415825 | None:intergenic | 50.0% |
| !! | AGAGTCGAGTTTGGTGTTGG+TGG | - | chr3_1:60416242-60416261 | Msa0366010:intron | 50.0% |
| !! | GGTGTTGGTGGTGCAGAATA+TGG | - | chr3_1:60416254-60416273 | Msa0366010:intron | 50.0% |
| AGCCATCAGTGAAACCTGTG+TGG | - | chr3_1:60416537-60416556 | Msa0366010:intron | 50.0% | |
| GCCATCAGTGAAACCTGTGT+GGG | - | chr3_1:60416538-60416557 | Msa0366010:intron | 50.0% | |
| TCCCACACAGGTTTCACTGA+TGG | + | chr3_1:60416542-60416561 | None:intergenic | 50.0% | |
| TCAGTGGGACATTGTGGGAA+AGG | + | chr3_1:60416599-60416618 | None:intergenic | 50.0% | |
| GCAACAGATTCTCGGTCAGT+GGG | + | chr3_1:60416614-60416633 | None:intergenic | 50.0% | |
| TGCAACAGATTCTCGGTCAG+TGG | + | chr3_1:60416615-60416634 | None:intergenic | 50.0% | |
| TGCTTGCAGGTTATGTGTGG+AGG | - | chr3_1:60416771-60416790 | Msa0366010:intron | 50.0% | |
| TCATGCATGCACCTTGAGTG+TGG | + | chr3_1:60417372-60417391 | None:intergenic | 50.0% | |
| CTCGGTCAGTGGGACATTGT+GGG | + | chr3_1:60416604-60416623 | None:intergenic | 55.0% | |
| TCTCGGTCAGTGGGACATTG+TGG | + | chr3_1:60416605-60416624 | None:intergenic | 55.0% | |
| CCAAGCATCTTGCATGGTGC+AGG | + | chr3_1:60417184-60417203 | None:intergenic | 55.0% | |
| CCTGCACCATGCAAGATGCT+TGG | - | chr3_1:60417181-60417200 | Msa0366010:intron | 55.0% | |
| ! | AGGGTGCCAAGCATCTTGCA+TGG | + | chr3_1:60417190-60417209 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 60414882 | 60417517 | 60414882 | ID=Msa0366010;Name=Msa0366010 |
| chr3_1 | mRNA | 60414882 | 60417517 | 60414882 | ID=Msa0366010-mRNA-1;Parent=Msa0366010;Name=Msa0366010-mRNA-1;_AED=0.01;_eAED=0.01;_QI=24|1|1|1|1|1|2|154|470 |
| chr3_1 | exon | 60414882 | 60416192 | 60414882 | ID=Msa0366010-mRNA-1:exon:11671;Parent=Msa0366010-mRNA-1 |
| chr3_1 | exon | 60417238 | 60417517 | 60417238 | ID=Msa0366010-mRNA-1:exon:11670;Parent=Msa0366010-mRNA-1 |
| chr3_1 | five_prime_UTR | 60417494 | 60417517 | 60417494 | ID=Msa0366010-mRNA-1:five_prime_utr;Parent=Msa0366010-mRNA-1 |
| chr3_1 | CDS | 60417238 | 60417493 | 60417238 | ID=Msa0366010-mRNA-1:cds;Parent=Msa0366010-mRNA-1 |
| chr3_1 | CDS | 60415036 | 60416192 | 60415036 | ID=Msa0366010-mRNA-1:cds;Parent=Msa0366010-mRNA-1 |
| chr3_1 | three_prime_UTR | 60414882 | 60415035 | 60414882 | ID=Msa0366010-mRNA-1:three_prime_utr;Parent=Msa0366010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
